Query 043707
Match_columns 347
No_of_seqs 530 out of 3156
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-35 3.4E-40 253.7 15.5 196 114-347 208-411 (459)
2 KOG0271 Notchless-like WD40 re 100.0 1E-34 2.3E-39 245.9 20.0 270 70-346 128-473 (480)
3 KOG0271 Notchless-like WD40 re 100.0 9.4E-34 2E-38 240.1 20.1 201 115-346 107-389 (480)
4 KOG0263 Transcription initiati 100.0 2.5E-32 5.3E-37 250.5 20.8 196 113-346 441-641 (707)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-33 1.6E-37 237.4 14.6 196 114-347 252-453 (459)
6 KOG0273 Beta-transducin family 100.0 1.1E-31 2.4E-36 233.0 21.5 217 124-346 236-474 (524)
7 KOG0302 Ribosome Assembly prot 100.0 2.6E-31 5.6E-36 225.0 15.7 229 89-347 177-432 (440)
8 KOG0279 G protein beta subunit 100.0 3.2E-30 7E-35 210.5 21.5 194 115-347 7-215 (315)
9 KOG0284 Polyadenylation factor 100.0 7E-32 1.5E-36 230.4 11.6 216 93-346 95-329 (464)
10 KOG0315 G-protein beta subunit 100.0 1.3E-29 2.9E-34 203.9 22.1 233 79-347 20-281 (311)
11 KOG0285 Pleiotropic regulator 100.0 3.1E-30 6.8E-35 217.2 17.4 208 95-347 130-342 (460)
12 KOG0645 WD40 repeat protein [G 100.0 5.9E-29 1.3E-33 202.4 24.1 200 115-347 6-218 (312)
13 KOG0279 G protein beta subunit 100.0 1.9E-29 4.2E-34 206.0 19.6 195 112-344 52-253 (315)
14 KOG0286 G-protein beta subunit 100.0 9.2E-29 2E-33 203.3 21.7 200 115-347 47-252 (343)
15 KOG0286 G-protein beta subunit 100.0 2E-28 4.4E-33 201.3 19.9 217 92-347 94-338 (343)
16 KOG0263 Transcription initiati 100.0 7.4E-29 1.6E-33 227.8 18.3 216 95-342 452-703 (707)
17 KOG0295 WD40 repeat-containing 100.0 6.8E-28 1.5E-32 203.5 20.2 227 114-347 141-399 (406)
18 KOG0284 Polyadenylation factor 100.0 2.5E-29 5.4E-34 214.9 11.4 243 68-347 106-373 (464)
19 KOG0273 Beta-transducin family 100.0 1.3E-27 2.8E-32 207.8 20.8 207 101-346 242-515 (524)
20 KOG0265 U5 snRNP-specific prot 100.0 7.1E-27 1.5E-31 192.9 22.0 233 115-347 39-331 (338)
21 KOG0315 G-protein beta subunit 100.0 1.4E-26 2.9E-31 186.6 21.3 201 113-347 30-238 (311)
22 KOG0266 WD40 repeat-containing 100.0 1.7E-26 3.8E-31 215.2 24.9 197 116-347 151-357 (456)
23 KOG0319 WD40-repeat-containing 100.0 1.8E-27 3.9E-32 216.9 17.7 194 115-346 403-611 (775)
24 KOG0281 Beta-TrCP (transducin 100.0 3E-28 6.5E-33 204.6 11.6 191 115-347 229-421 (499)
25 KOG0296 Angio-associated migra 100.0 3.2E-26 7E-31 193.5 23.6 229 113-347 54-391 (399)
26 KOG0643 Translation initiation 100.0 5.5E-27 1.2E-31 190.6 17.5 230 118-347 5-310 (327)
27 KOG0277 Peroxisomal targeting 100.0 2.3E-27 5E-32 191.5 14.9 198 113-347 94-302 (311)
28 KOG0282 mRNA splicing factor [ 100.0 7.6E-28 1.6E-32 209.9 12.2 203 112-347 203-455 (503)
29 KOG0276 Vesicle coat complex C 99.9 1.2E-26 2.7E-31 208.0 18.8 197 114-347 46-250 (794)
30 KOG0291 WD40-repeat-containing 99.9 3E-26 6.4E-31 209.5 21.5 197 113-346 340-542 (893)
31 KOG0266 WD40 repeat-containing 99.9 3.9E-26 8.4E-31 212.9 22.2 209 101-347 166-402 (456)
32 KOG0316 Conserved WD40 repeat- 99.9 2.9E-26 6.4E-31 183.3 18.2 194 113-347 7-206 (307)
33 KOG0645 WD40 repeat protein [G 99.9 1.1E-25 2.3E-30 183.5 21.7 198 121-347 59-304 (312)
34 PTZ00421 coronin; Provisional 99.9 1.6E-25 3.5E-30 208.4 25.5 192 118-346 70-282 (493)
35 KOG0318 WD40 repeat stress pro 99.9 5.4E-25 1.2E-29 194.0 26.2 151 115-266 182-351 (603)
36 KOG0319 WD40-repeat-containing 99.9 3.8E-26 8.1E-31 208.4 19.2 202 117-347 359-570 (775)
37 KOG0264 Nucleosome remodeling 99.9 8.1E-26 1.7E-30 196.1 17.2 201 116-346 170-396 (422)
38 KOG0276 Vesicle coat complex C 99.9 1.2E-25 2.6E-30 201.7 18.5 196 114-347 88-292 (794)
39 PTZ00420 coronin; Provisional 99.9 1.7E-24 3.7E-29 202.8 26.8 195 115-347 66-286 (568)
40 KOG0313 Microtubule binding pr 99.9 3.5E-25 7.7E-30 188.1 18.6 191 117-347 187-411 (423)
41 KOG0277 Peroxisomal targeting 99.9 2.8E-25 6.1E-30 179.5 15.6 187 123-346 60-257 (311)
42 KOG0318 WD40 repeat stress pro 99.9 5.8E-24 1.3E-28 187.5 25.1 230 118-347 54-343 (603)
43 KOG1407 WD40 repeat protein [F 99.9 7.5E-25 1.6E-29 177.7 17.5 224 117-346 14-253 (313)
44 KOG0310 Conserved WD40 repeat- 99.9 5.2E-25 1.1E-29 192.5 17.8 193 115-346 60-260 (487)
45 KOG0293 WD40 repeat-containing 99.9 6.8E-25 1.5E-29 188.2 17.5 241 101-347 231-506 (519)
46 KOG0313 Microtubule binding pr 99.9 8.8E-25 1.9E-29 185.7 17.9 235 101-347 122-369 (423)
47 KOG0306 WD40-repeat-containing 99.9 3.6E-25 7.7E-30 202.3 16.5 234 75-346 390-656 (888)
48 KOG0295 WD40 repeat-containing 99.9 8.9E-25 1.9E-29 184.7 17.7 226 115-347 100-357 (406)
49 KOG0291 WD40-repeat-containing 99.9 4.5E-24 9.7E-29 195.3 22.0 195 115-347 299-501 (893)
50 PLN00181 protein SPA1-RELATED; 99.9 6E-24 1.3E-28 211.9 24.7 192 123-347 532-731 (793)
51 cd00200 WD40 WD40 domain, foun 99.9 2.2E-23 4.8E-28 181.6 24.8 194 116-347 2-200 (289)
52 KOG0316 Conserved WD40 repeat- 99.9 6.6E-24 1.4E-28 169.9 18.9 225 113-343 49-289 (307)
53 KOG0292 Vesicle coat complex C 99.9 1.8E-24 3.8E-29 200.9 17.1 191 124-346 10-228 (1202)
54 KOG0289 mRNA splicing factor [ 99.9 6.8E-24 1.5E-28 183.1 18.8 198 112-345 250-453 (506)
55 KOG0292 Vesicle coat complex C 99.9 3E-24 6.4E-29 199.4 17.5 198 114-347 42-273 (1202)
56 KOG0283 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 193.8 22.0 195 112-346 358-568 (712)
57 cd00200 WD40 WD40 domain, foun 99.9 8.3E-23 1.8E-27 177.9 24.6 195 115-347 85-284 (289)
58 KOG0281 Beta-TrCP (transducin 99.9 7.4E-25 1.6E-29 184.3 10.8 195 113-346 267-469 (499)
59 KOG0275 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 181.8 11.4 157 121-308 211-380 (508)
60 KOG0285 Pleiotropic regulator 99.9 1.1E-23 2.4E-28 177.8 17.4 194 113-346 183-381 (460)
61 KOG0274 Cdc4 and related F-box 99.9 1.5E-23 3.3E-28 195.8 20.1 190 115-347 240-434 (537)
62 KOG0283 WD40 repeat-containing 99.9 1.4E-23 3E-28 194.7 18.9 195 116-345 259-523 (712)
63 PLN00181 protein SPA1-RELATED; 99.9 2E-22 4.4E-27 200.9 27.3 201 114-347 566-786 (793)
64 KOG1332 Vesicle coat complex C 99.9 5.1E-24 1.1E-28 171.4 12.6 193 121-347 9-234 (299)
65 KOG0269 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 195.3 14.0 198 113-347 123-333 (839)
66 PTZ00421 coronin; Provisional 99.9 1.3E-22 2.9E-27 189.0 23.0 158 156-344 70-231 (493)
67 KOG0308 Conserved WD40 repeat- 99.9 1.4E-23 3.1E-28 189.2 15.5 206 115-347 65-278 (735)
68 PTZ00420 coronin; Provisional 99.9 3E-22 6.5E-27 187.8 25.0 177 139-346 50-236 (568)
69 KOG0278 Serine/threonine kinas 99.9 7.5E-24 1.6E-28 171.0 12.2 201 114-347 50-290 (334)
70 KOG0264 Nucleosome remodeling 99.9 4.4E-23 9.5E-28 179.1 17.4 202 116-347 117-340 (422)
71 KOG0305 Anaphase promoting com 99.9 9.4E-23 2E-27 184.4 19.5 210 99-347 222-454 (484)
72 KOG0772 Uncharacterized conser 99.9 2.7E-23 5.9E-28 182.9 14.9 198 116-344 160-429 (641)
73 KOG0268 Sof1-like rRNA process 99.9 1.5E-23 3.2E-28 177.3 12.5 226 113-347 56-295 (433)
74 KOG0310 Conserved WD40 repeat- 99.9 1.3E-22 2.8E-27 177.6 18.6 209 99-347 73-302 (487)
75 KOG0282 mRNA splicing factor [ 99.9 2.9E-23 6.2E-28 181.5 14.5 229 113-347 248-498 (503)
76 KOG1332 Vesicle coat complex C 99.9 1.1E-22 2.3E-27 163.8 16.5 201 114-346 47-278 (299)
77 KOG0973 Histone transcription 99.9 2.1E-22 4.5E-27 191.4 21.3 198 113-347 59-348 (942)
78 KOG0640 mRNA cleavage stimulat 99.9 6.9E-23 1.5E-27 170.1 15.8 202 115-346 164-418 (430)
79 KOG0267 Microtubule severing p 99.9 4.9E-24 1.1E-28 194.3 9.4 192 116-345 63-259 (825)
80 KOG4283 Transcription-coupled 99.9 1.4E-22 3E-27 167.3 16.0 196 118-346 38-268 (397)
81 KOG0973 Histone transcription 99.9 1.8E-22 3.8E-27 191.9 18.5 200 124-343 14-238 (942)
82 KOG0275 Conserved WD40 repeat- 99.9 3E-23 6.6E-28 173.2 11.7 216 94-347 213-502 (508)
83 KOG0641 WD40 repeat protein [G 99.9 1.8E-21 3.9E-26 155.2 21.1 201 119-347 132-342 (350)
84 KOG0640 mRNA cleavage stimulat 99.9 2.7E-22 5.9E-27 166.6 17.0 196 116-347 105-328 (430)
85 KOG0301 Phospholipase A2-activ 99.9 1.6E-22 3.5E-27 183.6 17.0 189 113-347 91-281 (745)
86 KOG0647 mRNA export protein (c 99.9 7.6E-22 1.7E-26 163.4 19.0 186 125-347 29-274 (347)
87 KOG0294 WD40 repeat-containing 99.9 9.1E-22 2E-26 163.8 18.4 194 116-347 36-274 (362)
88 KOG0306 WD40-repeat-containing 99.9 1.4E-21 3.1E-26 179.0 20.5 205 115-347 406-615 (888)
89 KOG0288 WD40 repeat protein Ti 99.9 4.2E-22 9.2E-27 171.1 15.8 226 115-346 211-453 (459)
90 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-20 3.1E-25 156.9 23.7 207 132-344 67-295 (311)
91 KOG0289 mRNA splicing factor [ 99.9 3.2E-21 6.9E-26 166.7 18.9 184 125-346 221-411 (506)
92 KOG0300 WD40 repeat-containing 99.9 5.2E-22 1.1E-26 165.5 13.3 228 112-347 137-379 (481)
93 KOG0274 Cdc4 and related F-box 99.9 3.8E-21 8.1E-26 179.8 20.1 184 122-347 207-393 (537)
94 KOG0294 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 159.8 18.0 197 113-310 73-285 (362)
95 KOG2096 WD40 repeat protein [G 99.9 1.1E-20 2.5E-25 157.6 20.4 224 115-344 78-393 (420)
96 KOG0302 Ribosome Assembly prot 99.9 3E-21 6.5E-26 164.2 16.6 194 120-346 148-370 (440)
97 KOG0299 U3 snoRNP-associated p 99.9 2.4E-20 5.2E-25 162.4 22.1 218 121-342 200-443 (479)
98 KOG0639 Transducin-like enhanc 99.9 1E-20 2.2E-25 166.4 19.5 200 115-346 412-655 (705)
99 KOG0269 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 181.5 12.8 175 132-343 99-283 (839)
100 KOG0772 Uncharacterized conser 99.9 2.1E-21 4.5E-26 171.1 14.9 195 118-347 263-480 (641)
101 KOG0278 Serine/threonine kinas 99.9 4.4E-21 9.5E-26 155.1 14.2 192 116-308 94-299 (334)
102 KOG0647 mRNA export protein (c 99.9 4.5E-20 9.7E-25 153.0 20.2 220 117-342 66-311 (347)
103 KOG0308 Conserved WD40 repeat- 99.9 1.2E-21 2.6E-26 176.9 11.7 181 131-347 35-236 (735)
104 KOG0265 U5 snRNP-specific prot 99.9 8.6E-21 1.9E-25 157.0 15.6 157 152-346 38-196 (338)
105 KOG1036 Mitotic spindle checkp 99.9 1.2E-19 2.6E-24 150.9 22.3 218 116-344 47-294 (323)
106 KOG0643 Translation initiation 99.9 1.6E-20 3.5E-25 153.1 16.3 163 113-306 42-317 (327)
107 KOG0646 WD40 repeat protein [G 99.9 4.2E-20 9.1E-25 161.2 19.9 202 122-347 80-300 (476)
108 KOG0267 Microtubule severing p 99.9 3.8E-22 8.2E-27 182.0 7.3 191 119-347 24-219 (825)
109 KOG0300 WD40 repeat-containing 99.9 4.9E-21 1.1E-25 159.7 13.0 202 113-346 180-468 (481)
110 KOG0305 Anaphase promoting com 99.9 4.1E-20 8.9E-25 167.3 19.3 189 115-343 208-406 (484)
111 KOG2445 Nuclear pore complex c 99.9 4.6E-19 1E-23 147.4 23.5 226 121-347 11-311 (361)
112 KOG1407 WD40 repeat protein [F 99.9 1.2E-19 2.6E-24 147.6 19.5 220 119-346 60-294 (313)
113 KOG0301 Phospholipase A2-activ 99.8 5.3E-20 1.1E-24 167.5 17.9 225 113-347 4-242 (745)
114 KOG1273 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 149.3 19.8 230 115-344 17-269 (405)
115 KOG0268 Sof1-like rRNA process 99.8 4.3E-20 9.4E-25 156.5 14.7 196 113-346 99-337 (433)
116 KOG0641 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 137.8 23.4 216 124-346 33-295 (350)
117 KOG0293 WD40 repeat-containing 99.8 9.4E-20 2E-24 156.8 16.8 190 115-343 216-414 (519)
118 KOG1408 WD40 repeat protein [F 99.8 1.6E-19 3.4E-24 164.9 17.9 198 116-346 494-705 (1080)
119 KOG0270 WD40 repeat-containing 99.8 5.9E-20 1.3E-24 159.4 13.8 178 133-347 192-397 (463)
120 KOG0646 WD40 repeat protein [G 99.8 3E-19 6.5E-24 155.9 17.2 198 100-336 87-331 (476)
121 KOG0270 WD40 repeat-containing 99.8 2.7E-19 5.9E-24 155.2 16.1 189 121-345 241-440 (463)
122 KOG1007 WD repeat protein TSSC 99.8 5.3E-19 1.1E-23 145.8 15.5 197 117-346 57-281 (370)
123 KOG0296 Angio-associated migra 99.8 8.7E-19 1.9E-23 148.7 16.8 159 151-347 54-213 (399)
124 KOG2048 WD40 repeat protein [G 99.8 3.9E-18 8.5E-23 155.1 22.1 194 118-347 63-268 (691)
125 KOG2096 WD40 repeat protein [G 99.8 1.4E-18 2.9E-23 145.3 17.0 193 154-347 79-301 (420)
126 KOG0299 U3 snoRNP-associated p 99.8 5.2E-19 1.1E-23 154.2 14.5 192 116-347 135-349 (479)
127 KOG0307 Vesicle coat complex C 99.8 7.8E-20 1.7E-24 174.9 10.1 197 114-346 107-319 (1049)
128 KOG1036 Mitotic spindle checkp 99.8 5.5E-18 1.2E-22 141.0 19.7 182 124-346 14-199 (323)
129 KOG4328 WD40 protein [Function 99.8 1.1E-18 2.3E-23 152.1 15.4 199 116-346 179-391 (498)
130 KOG0288 WD40 repeat protein Ti 99.8 1E-19 2.3E-24 156.5 8.6 226 116-346 168-409 (459)
131 KOG2055 WD40 repeat protein [G 99.8 5.1E-18 1.1E-22 148.1 19.1 221 123-344 213-455 (514)
132 KOG1274 WD40 repeat protein [G 99.8 5.3E-18 1.1E-22 159.0 20.3 187 122-346 55-254 (933)
133 KOG0303 Actin-binding protein 99.8 2.3E-18 5E-23 147.6 16.2 190 118-344 76-283 (472)
134 KOG0307 Vesicle coat complex C 99.8 2.1E-19 4.6E-24 172.0 10.6 178 135-347 82-277 (1049)
135 KOG2106 Uncharacterized conser 99.8 2.1E-17 4.6E-22 145.7 21.7 206 99-345 251-512 (626)
136 KOG2106 Uncharacterized conser 99.8 2.1E-17 4.5E-22 145.8 21.5 216 118-346 240-469 (626)
137 KOG1063 RNA polymerase II elon 99.8 1.4E-17 3E-22 151.9 20.1 231 115-347 46-384 (764)
138 KOG0639 Transducin-like enhanc 99.8 1.5E-18 3.3E-23 152.8 12.9 178 128-346 516-696 (705)
139 KOG1408 WD40 repeat protein [F 99.8 3.7E-18 8.1E-23 156.0 15.3 212 128-346 329-571 (1080)
140 KOG1446 Histone H3 (Lys4) meth 99.8 7.4E-17 1.6E-21 134.9 21.4 190 154-346 7-209 (311)
141 KOG1009 Chromatin assembly com 99.8 1.2E-17 2.6E-22 143.7 15.3 172 119-306 8-195 (434)
142 KOG1539 WD repeat protein [Gen 99.8 8.5E-18 1.9E-22 156.1 15.3 183 124-346 449-639 (910)
143 KOG1274 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 151.3 21.3 181 127-341 102-287 (933)
144 KOG1034 Transcriptional repres 99.8 6.1E-18 1.3E-22 141.9 10.8 214 114-347 126-376 (385)
145 KOG1007 WD repeat protein TSSC 99.8 5.1E-17 1.1E-21 134.2 15.9 198 116-346 115-353 (370)
146 KOG0642 Cell-cycle nuclear pro 99.8 3E-17 6.6E-22 146.6 15.4 194 113-306 334-561 (577)
147 KOG0321 WD40 repeat-containing 99.8 2.3E-17 4.9E-22 149.2 14.7 224 116-345 93-382 (720)
148 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-17 5.7E-22 147.0 14.8 200 118-346 289-553 (577)
149 KOG1445 Tumor-specific antigen 99.7 2.2E-17 4.8E-22 149.3 13.8 185 132-346 590-786 (1012)
150 KOG4378 Nuclear protein COP1 [ 99.7 1.5E-16 3.3E-21 140.1 17.6 185 115-336 113-305 (673)
151 KOG0650 WD40 repeat nucleolar 99.7 6.2E-17 1.3E-21 145.5 14.9 226 115-347 392-673 (733)
152 KOG0303 Actin-binding protein 99.7 1.4E-16 3E-21 136.8 16.0 160 152-344 72-235 (472)
153 KOG1063 RNA polymerase II elon 99.7 8.2E-17 1.8E-21 146.9 15.1 203 116-346 518-755 (764)
154 KOG0321 WD40 repeat-containing 99.7 8.4E-17 1.8E-21 145.6 14.8 184 133-346 64-293 (720)
155 KOG1539 WD repeat protein [Gen 99.7 4.6E-15 9.9E-20 138.2 26.2 236 112-347 191-599 (910)
156 KOG0290 Conserved WD40 repeat- 99.7 2.7E-16 5.9E-21 130.1 15.9 193 122-344 149-356 (364)
157 KOG1538 Uncharacterized conser 99.7 9.2E-16 2E-20 139.7 20.4 238 101-347 19-286 (1081)
158 KOG1188 WD40 repeat protein [G 99.7 5.6E-16 1.2E-20 130.8 16.5 179 134-345 41-233 (376)
159 KOG2048 WD40 repeat protein [G 99.7 1.2E-15 2.7E-20 139.0 19.5 199 120-347 107-312 (691)
160 KOG0771 Prolactin regulatory e 99.7 2.4E-16 5.2E-21 136.5 13.8 186 125-346 148-346 (398)
161 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 123.2 16.9 190 128-344 17-226 (325)
162 KOG4378 Nuclear protein COP1 [ 99.7 4.3E-16 9.3E-21 137.3 14.6 176 133-346 91-272 (673)
163 KOG2445 Nuclear pore complex c 99.7 2.8E-15 6E-20 125.0 18.6 161 158-346 10-249 (361)
164 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.7E-14 5.8E-19 126.3 25.7 224 115-346 23-271 (300)
165 KOG1523 Actin-related protein 99.7 2.6E-15 5.7E-20 125.8 17.3 200 119-347 6-229 (361)
166 KOG4283 Transcription-coupled 99.7 1.6E-15 3.5E-20 125.8 15.4 170 154-347 36-212 (397)
167 KOG1188 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 130.4 12.5 165 113-307 60-243 (376)
168 KOG1587 Cytoplasmic dynein int 99.7 8.3E-15 1.8E-19 136.6 20.8 221 123-347 242-509 (555)
169 KOG1524 WD40 repeat-containing 99.7 2.2E-15 4.7E-20 134.1 15.4 194 134-346 76-278 (737)
170 KOG2919 Guanine nucleotide-bin 99.7 3.2E-15 6.8E-20 125.5 14.5 180 127-344 164-360 (406)
171 KOG0322 G-protein beta subunit 99.7 5E-15 1.1E-19 121.1 14.9 225 116-347 7-316 (323)
172 KOG0322 G-protein beta subunit 99.7 1.3E-15 2.8E-20 124.5 11.4 156 122-305 149-322 (323)
173 KOG2394 WD40 protein DMR-N9 [G 99.6 5.5E-15 1.2E-19 131.6 15.1 190 135-334 187-384 (636)
174 KOG1009 Chromatin assembly com 99.6 2E-15 4.3E-20 130.1 11.4 156 161-346 13-187 (434)
175 KOG2055 WD40 repeat protein [G 99.6 1.3E-14 2.9E-19 127.0 16.5 218 92-346 255-504 (514)
176 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.1E-13 2.3E-18 122.5 21.7 172 133-346 1-179 (300)
177 KOG0290 Conserved WD40 repeat- 99.6 1.3E-14 2.7E-19 120.3 14.4 190 121-346 94-310 (364)
178 KOG1273 WD40 repeat protein [G 99.6 1.4E-14 3E-19 121.3 14.7 145 164-347 26-219 (405)
179 KOG2919 Guanine nucleotide-bin 99.6 2.5E-14 5.5E-19 120.2 15.9 185 132-347 122-320 (406)
180 KOG4328 WD40 protein [Function 99.6 9.5E-15 2.1E-19 127.7 13.8 194 116-343 227-439 (498)
181 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.6E-19 129.5 14.3 131 124-286 220-383 (636)
182 KOG1310 WD40 repeat protein [G 99.6 4.9E-15 1.1E-19 132.3 11.6 171 114-306 41-231 (758)
183 KOG0649 WD40 repeat protein [G 99.6 1.4E-13 3E-18 111.5 18.9 177 116-334 55-256 (325)
184 KOG0650 WD40 repeat nucleolar 99.6 1.7E-14 3.7E-19 130.0 13.8 199 116-347 514-728 (733)
185 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 109.8 23.6 201 143-347 75-315 (346)
186 KOG0644 Uncharacterized conser 99.6 1E-15 2.2E-20 142.5 5.6 218 113-342 180-456 (1113)
187 KOG4227 WD40 repeat protein [G 99.6 5.8E-14 1.2E-18 120.8 14.5 191 116-341 49-261 (609)
188 COG2319 FOG: WD40 repeat [Gene 99.6 1E-12 2.2E-17 120.4 23.9 194 115-346 100-306 (466)
189 KOG1538 Uncharacterized conser 99.6 1.6E-13 3.5E-18 125.3 16.1 209 128-346 19-244 (1081)
190 KOG2110 Uncharacterized conser 99.6 2.1E-12 4.5E-17 110.6 21.6 153 123-308 87-250 (391)
191 COG2319 FOG: WD40 repeat [Gene 99.5 5.5E-12 1.2E-16 115.6 26.0 197 114-346 146-351 (466)
192 KOG1310 WD40 repeat protein [G 99.5 6E-14 1.3E-18 125.4 11.4 162 154-346 43-223 (758)
193 KOG1034 Transcriptional repres 99.5 5.3E-13 1.1E-17 112.5 16.4 154 121-307 36-212 (385)
194 KOG2110 Uncharacterized conser 99.5 7.8E-12 1.7E-16 107.1 21.8 185 125-347 48-241 (391)
195 KOG1523 Actin-related protein 99.5 6.7E-13 1.5E-17 111.6 14.9 156 160-347 9-169 (361)
196 KOG1517 Guanine nucleotide bin 99.5 4.8E-13 1E-17 127.9 15.6 241 67-347 1121-1374(1387)
197 KOG1240 Protein kinase contain 99.5 3.5E-12 7.6E-17 123.8 19.9 204 112-344 1037-1261(1431)
198 KOG1963 WD40 repeat protein [G 99.5 6.3E-12 1.4E-16 118.4 19.6 210 129-346 24-314 (792)
199 KOG1963 WD40 repeat protein [G 99.5 2.2E-11 4.9E-16 114.7 23.1 218 127-345 211-530 (792)
200 KOG0644 Uncharacterized conser 99.5 3.1E-14 6.6E-19 132.8 4.0 157 152-346 181-338 (1113)
201 KOG1445 Tumor-specific antigen 99.5 7E-13 1.5E-17 120.6 12.4 162 153-345 71-235 (1012)
202 KOG2139 WD40 repeat protein [G 99.4 2.9E-11 6.3E-16 103.4 20.5 184 124-343 141-364 (445)
203 PF08662 eIF2A: Eukaryotic tra 99.4 1.7E-11 3.6E-16 101.2 18.8 109 161-306 59-179 (194)
204 KOG0771 Prolactin regulatory e 99.4 1.5E-12 3.1E-17 113.3 12.4 148 165-346 148-303 (398)
205 KOG1517 Guanine nucleotide bin 99.4 4.1E-12 9E-17 121.6 16.2 176 134-344 1124-1324(1387)
206 PF08662 eIF2A: Eukaryotic tra 99.4 1.7E-11 3.7E-16 101.2 17.4 101 234-345 58-164 (194)
207 KOG3881 Uncharacterized conser 99.4 1.1E-11 2.4E-16 106.9 16.4 201 117-346 99-312 (412)
208 PRK11028 6-phosphogluconolacto 99.4 5.9E-11 1.3E-15 106.9 22.0 187 128-344 86-293 (330)
209 PRK01742 tolB translocation pr 99.4 5.6E-12 1.2E-16 117.4 15.6 162 142-345 183-353 (429)
210 KOG2139 WD40 repeat protein [G 99.4 2.4E-11 5.3E-16 103.9 17.3 190 126-342 101-298 (445)
211 KOG3881 Uncharacterized conser 99.4 1.6E-11 3.5E-16 105.9 16.0 145 133-308 161-322 (412)
212 PRK01742 tolB translocation pr 99.4 2.5E-11 5.4E-16 113.1 18.3 185 117-346 197-393 (429)
213 KOG4227 WD40 repeat protein [G 99.4 9.8E-12 2.1E-16 107.3 14.2 161 155-344 50-215 (609)
214 KOG1524 WD40 repeat-containing 99.4 5.3E-12 1.2E-16 112.9 12.8 104 233-344 102-246 (737)
215 KOG1272 WD40-repeat-containing 99.4 4E-12 8.8E-17 111.8 10.9 176 134-346 222-401 (545)
216 KOG1354 Serine/threonine prote 99.4 3.9E-11 8.4E-16 102.0 15.2 220 123-343 25-291 (433)
217 KOG0974 WD-repeat protein WDR6 99.3 1.7E-11 3.7E-16 117.4 13.9 142 133-308 145-290 (967)
218 PRK11028 6-phosphogluconolacto 99.3 3.2E-10 6.9E-15 102.1 20.8 175 136-344 5-194 (330)
219 KOG1272 WD40-repeat-containing 99.3 3.8E-12 8.2E-17 111.9 7.7 158 141-338 189-348 (545)
220 KOG0974 WD-repeat protein WDR6 99.3 8.1E-11 1.7E-15 112.9 17.2 176 132-347 98-281 (967)
221 KOG1587 Cytoplasmic dynein int 99.3 2.2E-10 4.8E-15 107.2 18.4 199 143-347 222-465 (555)
222 PRK05137 tolB translocation pr 99.3 3.4E-10 7.5E-15 105.7 19.8 161 144-345 183-354 (435)
223 KOG4547 WD40 repeat-containing 99.3 1.9E-10 4.1E-15 104.3 17.1 172 133-342 5-207 (541)
224 KOG2111 Uncharacterized conser 99.3 1.1E-09 2.4E-14 92.4 19.6 82 155-266 175-257 (346)
225 PRK04922 tolB translocation pr 99.3 8.7E-10 1.9E-14 102.9 20.9 188 116-345 196-399 (433)
226 PRK02889 tolB translocation pr 99.3 8E-10 1.7E-14 102.9 20.1 190 117-346 189-392 (427)
227 KOG1334 WD40 repeat protein [G 99.3 3.4E-11 7.4E-16 106.6 10.0 200 114-343 133-356 (559)
228 PRK05137 tolB translocation pr 99.2 1.8E-09 3.9E-14 100.9 21.8 188 116-345 194-397 (435)
229 PRK03629 tolB translocation pr 99.2 1.3E-09 2.9E-14 101.4 20.0 163 144-345 180-351 (429)
230 PRK02889 tolB translocation pr 99.2 5.9E-10 1.3E-14 103.8 17.5 174 133-345 164-348 (427)
231 KOG0280 Uncharacterized conser 99.2 4.9E-10 1.1E-14 93.5 14.9 168 133-336 84-265 (339)
232 TIGR02800 propeller_TolB tol-p 99.2 2.8E-09 6E-14 99.2 21.3 188 117-346 183-386 (417)
233 KOG2321 WD40 repeat protein [G 99.2 4.1E-10 8.9E-15 101.8 14.8 186 132-346 145-335 (703)
234 KOG0280 Uncharacterized conser 99.2 3.1E-10 6.8E-15 94.7 12.3 181 131-343 131-320 (339)
235 KOG1064 RAVE (regulator of V-A 99.2 1.9E-10 4.1E-15 115.7 12.9 211 119-347 2204-2439(2439)
236 PRK03629 tolB translocation pr 99.2 4.2E-09 9E-14 98.1 21.3 186 119-346 194-395 (429)
237 PRK04922 tolB translocation pr 99.2 1.1E-09 2.3E-14 102.3 16.9 162 143-345 184-356 (433)
238 KOG4497 Uncharacterized conser 99.2 2.2E-10 4.8E-15 97.0 10.4 199 100-347 14-233 (447)
239 PF02239 Cytochrom_D1: Cytochr 99.2 9E-09 2E-13 93.4 21.2 170 136-343 9-190 (369)
240 COG5170 CDC55 Serine/threonine 99.1 8.7E-10 1.9E-14 92.8 12.9 221 122-343 25-299 (460)
241 TIGR02800 propeller_TolB tol-p 99.1 1.4E-08 3E-13 94.5 18.6 163 143-346 170-343 (417)
242 KOG2321 WD40 repeat protein [G 99.1 2.6E-08 5.6E-13 90.4 18.7 222 115-342 44-291 (703)
243 PF02239 Cytochrom_D1: Cytochr 99.0 2E-07 4.3E-12 84.7 24.7 224 114-345 27-336 (369)
244 PRK00178 tolB translocation pr 99.0 5.8E-08 1.3E-12 90.8 21.4 188 116-345 191-394 (430)
245 KOG2695 WD40 repeat protein [G 99.0 8.9E-10 1.9E-14 94.0 8.1 167 133-334 225-402 (425)
246 PRK04792 tolB translocation pr 99.0 5.2E-08 1.1E-12 91.2 18.7 161 144-345 199-370 (448)
247 PRK00178 tolB translocation pr 99.0 6.6E-08 1.4E-12 90.4 19.4 160 144-344 180-350 (430)
248 KOG4547 WD40 repeat-containing 99.0 3.7E-08 8E-13 89.7 16.7 142 134-309 71-223 (541)
249 KOG4714 Nucleoporin [Nuclear s 98.9 6.8E-09 1.5E-13 85.4 9.8 194 118-347 30-247 (319)
250 PRK04792 tolB translocation pr 98.9 1.6E-07 3.4E-12 88.0 20.3 176 128-345 224-413 (448)
251 PF10282 Lactonase: Lactonase, 98.9 1.7E-06 3.7E-11 78.4 26.4 216 128-345 43-312 (345)
252 KOG1334 WD40 repeat protein [G 98.9 7E-09 1.5E-13 92.2 10.4 202 116-345 225-457 (559)
253 KOG1240 Protein kinase contain 98.9 3.5E-08 7.6E-13 96.7 15.6 165 152-347 1039-1218(1431)
254 KOG4532 WD40-like repeat conta 98.9 1.5E-07 3.3E-12 78.0 16.5 181 135-345 130-323 (344)
255 PRK01029 tolB translocation pr 98.9 2.7E-07 5.8E-12 85.8 20.3 171 138-344 204-390 (428)
256 KOG3914 WD repeat protein WDR4 98.9 2.5E-08 5.4E-13 86.8 12.2 79 232-310 148-227 (390)
257 KOG1409 Uncharacterized conser 98.9 3.1E-07 6.8E-12 78.7 17.8 183 125-307 70-271 (404)
258 PRK01029 tolB translocation pr 98.8 6.7E-07 1.5E-11 83.2 20.1 170 128-336 237-426 (428)
259 KOG0882 Cyclophilin-related pe 98.8 4.2E-08 9E-13 86.7 11.1 224 121-344 7-296 (558)
260 KOG1409 Uncharacterized conser 98.8 1.3E-07 2.9E-12 80.8 13.2 224 115-347 16-263 (404)
261 KOG4714 Nucleoporin [Nuclear s 98.8 5.2E-08 1.1E-12 80.3 10.3 144 131-306 99-254 (319)
262 COG2706 3-carboxymuconate cycl 98.8 4.2E-06 9E-11 72.5 21.4 188 128-346 95-312 (346)
263 KOG4497 Uncharacterized conser 98.8 7.5E-08 1.6E-12 81.9 10.6 138 166-344 13-153 (447)
264 KOG1354 Serine/threonine prote 98.8 3E-08 6.4E-13 84.8 8.0 165 121-307 162-360 (433)
265 KOG2041 WD40 repeat protein [G 98.8 1.4E-07 2.9E-12 88.0 12.7 112 124-265 15-145 (1189)
266 PF00400 WD40: WD domain, G-be 98.7 3.1E-08 6.8E-13 58.8 5.7 37 153-189 3-39 (39)
267 KOG3914 WD repeat protein WDR4 98.7 6.5E-08 1.4E-12 84.3 9.7 103 140-274 129-232 (390)
268 KOG4190 Uncharacterized conser 98.7 4.6E-08 9.9E-13 88.6 8.5 165 115-309 727-909 (1034)
269 PF04762 IKI3: IKI3 family; I 98.7 2.6E-06 5.5E-11 86.0 21.3 217 123-345 75-325 (928)
270 TIGR02658 TTQ_MADH_Hv methylam 98.7 3.5E-05 7.6E-10 68.9 26.0 219 114-343 38-318 (352)
271 PF00400 WD40: WD domain, G-be 98.7 7.2E-08 1.6E-12 57.2 6.1 38 267-304 1-39 (39)
272 COG4946 Uncharacterized protei 98.7 3.1E-06 6.7E-11 75.7 18.5 171 132-343 331-507 (668)
273 KOG1064 RAVE (regulator of V-A 98.7 1.4E-07 3E-12 95.8 10.6 152 157-346 2204-2358(2439)
274 KOG4532 WD40-like repeat conta 98.6 3E-06 6.4E-11 70.5 16.1 169 133-336 84-262 (344)
275 KOG2066 Vacuolar assembly/sort 98.5 1.5E-06 3.3E-11 82.2 13.4 174 124-340 40-221 (846)
276 KOG2315 Predicted translation 98.5 6.4E-06 1.4E-10 75.0 16.7 126 144-306 252-390 (566)
277 KOG4190 Uncharacterized conser 98.5 1.3E-07 2.9E-12 85.6 6.0 165 154-346 728-898 (1034)
278 KOG2114 Vacuolar assembly/sort 98.5 9.9E-06 2.1E-10 77.4 18.2 195 125-345 27-235 (933)
279 COG2706 3-carboxymuconate cycl 98.5 0.0001 2.2E-09 64.1 22.3 202 142-343 15-262 (346)
280 KOG1912 WD40 repeat protein [G 98.5 6.8E-05 1.5E-09 71.1 21.9 209 99-307 20-305 (1062)
281 KOG0309 Conserved WD40 repeat- 98.5 8E-07 1.7E-11 83.3 9.2 143 135-308 83-234 (1081)
282 KOG0309 Conserved WD40 repeat- 98.4 6.8E-07 1.5E-11 83.7 8.2 193 115-307 106-340 (1081)
283 PF11768 DUF3312: Protein of u 98.4 4.8E-05 1.1E-09 70.3 19.9 102 232-335 256-368 (545)
284 PRK04043 tolB translocation pr 98.4 7.7E-05 1.7E-09 69.2 20.7 174 129-346 195-389 (419)
285 KOG2695 WD40 repeat protein [G 98.4 8.5E-07 1.8E-11 76.1 6.5 126 123-277 252-388 (425)
286 KOG2066 Vacuolar assembly/sort 98.4 4.5E-05 9.7E-10 72.6 18.4 139 132-306 82-233 (846)
287 PLN02919 haloacid dehalogenase 98.4 4.1E-05 8.8E-10 78.8 19.6 170 128-308 689-890 (1057)
288 PF10282 Lactonase: Lactonase, 98.3 0.00027 5.8E-09 64.1 22.8 158 125-306 145-322 (345)
289 PLN02919 haloacid dehalogenase 98.3 0.00015 3.3E-09 74.7 23.0 199 128-346 630-880 (1057)
290 COG5170 CDC55 Serine/threonine 98.3 3.1E-06 6.6E-11 71.9 8.9 162 159-345 170-358 (460)
291 KOG1275 PAB-dependent poly(A) 98.3 7.9E-06 1.7E-10 78.5 12.5 175 133-346 147-334 (1118)
292 KOG1275 PAB-dependent poly(A) 98.3 1.4E-05 2.9E-10 77.0 13.9 147 125-306 179-342 (1118)
293 PF15492 Nbas_N: Neuroblastoma 98.3 0.00053 1.1E-08 58.0 21.3 192 128-347 4-252 (282)
294 PRK04043 tolB translocation pr 98.2 0.00027 5.8E-09 65.6 20.4 140 162-344 188-338 (419)
295 COG4946 Uncharacterized protei 98.2 0.0019 4.2E-08 58.3 24.1 170 169-346 274-465 (668)
296 KOG2315 Predicted translation 98.2 2.6E-05 5.5E-10 71.2 12.5 128 123-287 270-410 (566)
297 PF08450 SGL: SMP-30/Gluconola 98.2 0.0017 3.8E-08 55.7 23.3 179 132-342 11-201 (246)
298 PF15492 Nbas_N: Neuroblastoma 98.2 0.00039 8.5E-09 58.8 18.1 157 128-308 50-261 (282)
299 KOG2041 WD40 repeat protein [G 98.2 8.2E-06 1.8E-10 76.5 8.8 128 161-305 14-144 (1189)
300 KOG2314 Translation initiation 98.2 2.6E-05 5.6E-10 71.2 11.7 137 164-341 213-363 (698)
301 KOG3621 WD40 repeat-containing 98.1 3.3E-05 7.2E-10 72.5 11.1 116 125-266 37-155 (726)
302 KOG2314 Translation initiation 98.1 0.00036 7.8E-09 64.0 17.1 104 234-345 444-558 (698)
303 KOG1008 Uncharacterized conser 98.1 1.4E-06 3E-11 80.6 1.9 177 134-345 71-265 (783)
304 TIGR03300 assembly_YfgL outer 98.1 0.00017 3.7E-09 66.2 15.4 136 133-303 241-376 (377)
305 TIGR03300 assembly_YfgL outer 98.1 0.00056 1.2E-08 62.8 18.7 202 133-347 145-372 (377)
306 PF11768 DUF3312: Protein of u 98.1 2E-05 4.3E-10 72.8 8.8 73 159-265 257-329 (545)
307 PF08450 SGL: SMP-30/Gluconola 98.0 0.0062 1.3E-07 52.3 23.5 169 133-343 51-244 (246)
308 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0026 5.6E-08 57.1 20.6 108 143-277 27-148 (352)
309 PF04762 IKI3: IKI3 family; I 98.0 0.00076 1.6E-08 68.5 18.9 192 125-346 211-448 (928)
310 KOG1832 HIV-1 Vpr-binding prot 97.9 2.1E-05 4.6E-10 75.5 5.4 156 114-308 1092-1257(1516)
311 KOG3621 WD40 repeat-containing 97.9 8.9E-05 1.9E-09 69.7 9.3 114 234-347 32-147 (726)
312 KOG1920 IkappaB kinase complex 97.9 0.0017 3.7E-08 64.9 18.4 213 124-341 69-306 (1265)
313 COG5354 Uncharacterized protei 97.8 0.0011 2.5E-08 60.2 15.7 208 128-343 39-293 (561)
314 KOG1645 RING-finger-containing 97.8 8.4E-05 1.8E-09 65.4 7.9 78 231-309 189-269 (463)
315 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0018 3.9E-08 47.3 13.5 97 238-346 2-106 (111)
316 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 67.3 9.1 94 235-334 20-115 (665)
317 PF13360 PQQ_2: PQQ-like domai 97.7 0.0061 1.3E-07 51.8 18.1 147 131-309 34-194 (238)
318 KOG3617 WD40 and TPR repeat-co 97.7 0.0019 4.2E-08 62.3 15.0 67 126-192 62-132 (1416)
319 COG5354 Uncharacterized protei 97.6 0.0027 5.8E-08 57.8 15.0 152 144-346 256-421 (561)
320 PF07433 DUF1513: Protein of u 97.6 0.018 4E-07 50.2 19.1 184 128-344 57-276 (305)
321 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.012 2.5E-07 43.1 15.1 100 164-302 2-110 (111)
322 smart00320 WD40 WD40 repeats. 97.6 0.00014 3.1E-09 41.5 4.5 36 154-189 5-40 (40)
323 PF07433 DUF1513: Protein of u 97.6 0.042 9.1E-07 48.0 21.3 167 140-344 35-236 (305)
324 PRK11138 outer membrane biogen 97.6 0.0041 8.8E-08 57.5 16.1 137 133-305 256-393 (394)
325 smart00320 WD40 WD40 repeats. 97.6 0.00031 6.7E-09 40.0 5.8 38 267-304 2-40 (40)
326 KOG1912 WD40 repeat protein [G 97.6 0.0028 6E-08 60.7 14.3 145 128-305 20-185 (1062)
327 KOG4640 Anaphase-promoting com 97.5 0.00038 8.3E-09 64.8 8.4 93 162-287 21-115 (665)
328 KOG1645 RING-finger-containing 97.5 0.00073 1.6E-08 59.7 9.5 154 145-336 175-342 (463)
329 PF08553 VID27: VID27 cytoplas 97.5 0.003 6.6E-08 62.2 14.3 91 248-344 543-638 (794)
330 PF08596 Lgl_C: Lethal giant l 97.5 0.01 2.2E-07 54.4 16.9 168 163-331 3-199 (395)
331 PF13360 PQQ_2: PQQ-like domai 97.5 0.022 4.8E-07 48.4 18.0 151 133-309 76-233 (238)
332 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00019 4E-09 69.3 4.5 149 150-340 1090-1246(1516)
333 PF04841 Vps16_N: Vps16, N-ter 97.3 0.12 2.6E-06 48.0 22.4 49 144-193 62-111 (410)
334 PRK11138 outer membrane biogen 97.3 0.061 1.3E-06 49.7 20.1 63 246-309 293-356 (394)
335 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.4E-06 48.2 21.0 175 112-289 69-271 (410)
336 KOG3617 WD40 and TPR repeat-co 97.2 0.0016 3.4E-08 62.9 8.5 73 237-309 61-134 (1416)
337 KOG2395 Protein involved in va 97.2 0.0093 2E-07 54.9 12.5 102 237-344 377-491 (644)
338 KOG1920 IkappaB kinase complex 97.2 0.016 3.4E-07 58.4 15.0 143 162-344 69-261 (1265)
339 PRK13616 lipoprotein LpqB; Pro 97.1 0.07 1.5E-06 51.8 19.3 186 128-346 356-560 (591)
340 KOG2114 Vacuolar assembly/sort 97.1 0.059 1.3E-06 52.6 17.9 163 115-307 56-244 (933)
341 COG0823 TolB Periplasmic compo 97.1 0.016 3.5E-07 53.7 13.9 150 156-344 187-345 (425)
342 PF04053 Coatomer_WDAD: Coatom 97.1 0.02 4.4E-07 53.4 14.3 167 128-342 39-213 (443)
343 KOG1008 Uncharacterized conser 97.0 0.00019 4.2E-09 66.8 0.8 157 118-308 97-277 (783)
344 PF03178 CPSF_A: CPSF A subuni 97.0 0.082 1.8E-06 47.4 17.2 177 134-346 43-257 (321)
345 KOG2079 Vacuolar assembly/sort 97.0 0.0084 1.8E-07 59.6 11.1 78 125-202 91-171 (1206)
346 PF10647 Gmad1: Lipoprotein Lp 96.9 0.18 3.8E-06 43.6 17.9 149 163-346 25-187 (253)
347 KOG2444 WD40 repeat protein [G 96.9 0.0036 7.8E-08 51.5 6.8 140 136-307 33-178 (238)
348 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.095 2.1E-06 44.2 14.9 134 133-300 23-159 (354)
349 KOG2079 Vacuolar assembly/sort 96.8 0.0067 1.4E-07 60.3 9.2 101 173-306 99-203 (1206)
350 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0054 1.2E-07 37.5 5.1 35 234-269 10-44 (47)
351 KOG0882 Cyclophilin-related pe 96.7 0.0073 1.6E-07 54.3 7.8 153 159-346 7-166 (558)
352 PRK02888 nitrous-oxide reducta 96.7 0.072 1.6E-06 51.0 14.6 113 229-343 314-450 (635)
353 PF04053 Coatomer_WDAD: Coatom 96.7 0.015 3.2E-07 54.2 10.0 135 160-346 31-166 (443)
354 PRK13616 lipoprotein LpqB; Pro 96.6 0.097 2.1E-06 50.8 15.3 142 162-340 350-512 (591)
355 PF06977 SdiA-regulated: SdiA- 96.6 0.41 9E-06 41.0 22.3 201 118-342 16-239 (248)
356 PF00780 CNH: CNH domain; Int 96.5 0.24 5.2E-06 43.2 16.4 158 128-308 2-167 (275)
357 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.14 3E-06 43.3 13.5 103 173-309 23-126 (354)
358 KOG2444 WD40 repeat protein [G 96.5 0.012 2.6E-07 48.5 7.2 63 132-194 69-135 (238)
359 PF03178 CPSF_A: CPSF A subuni 96.5 0.29 6.2E-06 43.9 16.9 151 121-304 86-263 (321)
360 KOG4499 Ca2+-binding protein R 96.4 0.15 3.3E-06 42.4 13.1 123 143-288 139-264 (310)
361 PF08596 Lgl_C: Lethal giant l 96.4 0.059 1.3E-06 49.6 12.2 110 237-346 3-165 (395)
362 PF06977 SdiA-regulated: SdiA- 96.4 0.54 1.2E-05 40.2 19.3 153 126-303 67-247 (248)
363 PF00780 CNH: CNH domain; Int 96.3 0.19 4E-06 43.8 14.1 137 171-346 5-158 (275)
364 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.4E-07 35.0 5.2 31 161-191 11-41 (47)
365 PF08553 VID27: VID27 cytoplas 96.1 0.24 5.3E-06 49.2 15.2 139 140-306 501-647 (794)
366 KOG3630 Nuclear pore complex, 96.0 0.12 2.5E-06 52.3 12.2 162 156-342 94-261 (1405)
367 COG3391 Uncharacterized conser 95.8 0.94 2E-05 41.7 17.0 144 164-343 76-225 (381)
368 PF06433 Me-amine-dh_H: Methyl 95.8 1.2 2.5E-05 39.7 16.4 140 143-310 17-169 (342)
369 COG0823 TolB Periplasmic compo 95.7 0.29 6.4E-06 45.5 13.2 111 162-306 238-358 (425)
370 PF14870 PSII_BNR: Photosynthe 95.6 1.5 3.3E-05 38.8 21.1 170 139-346 120-296 (302)
371 PF15390 DUF4613: Domain of un 95.4 0.34 7.4E-06 45.7 12.3 105 233-342 54-173 (671)
372 COG3386 Gluconolactonase [Carb 95.2 1.2 2.6E-05 39.5 14.9 126 145-296 145-276 (307)
373 PF02897 Peptidase_S9_N: Proly 95.1 0.74 1.6E-05 42.8 14.1 105 238-346 126-248 (414)
374 cd00216 PQQ_DH Dehydrogenases 95.0 1.9 4.1E-05 41.2 16.6 55 255-310 364-428 (488)
375 PF12234 Rav1p_C: RAVE protein 95.0 0.97 2.1E-05 43.9 14.3 106 239-344 33-148 (631)
376 PF14870 PSII_BNR: Photosynthe 95.0 2.5 5.3E-05 37.4 20.4 107 235-345 144-253 (302)
377 COG3391 Uncharacterized conser 95.0 3 6.5E-05 38.4 19.6 172 131-342 83-270 (381)
378 COG3386 Gluconolactonase [Carb 94.9 2.5 5.4E-05 37.5 18.0 141 135-306 39-193 (307)
379 PF12234 Rav1p_C: RAVE protein 94.9 0.9 2E-05 44.1 14.0 74 234-308 71-158 (631)
380 PRK02888 nitrous-oxide reducta 94.9 1.1 2.3E-05 43.3 14.3 112 132-266 287-405 (635)
381 KOG2247 WD40 repeat-containing 94.8 0.0034 7.4E-08 57.2 -2.3 142 130-303 43-185 (615)
382 TIGR02604 Piru_Ver_Nterm putat 94.7 1.4 2.9E-05 40.4 14.4 55 236-292 72-138 (367)
383 PF02897 Peptidase_S9_N: Proly 94.6 1.8 3.9E-05 40.2 15.2 112 163-307 125-261 (414)
384 KOG2395 Protein involved in va 94.4 1.2 2.6E-05 41.6 12.9 144 136-307 349-501 (644)
385 KOG1916 Nuclear protein, conta 94.3 0.014 3.1E-07 57.1 0.4 59 133-191 195-265 (1283)
386 COG3204 Uncharacterized protei 94.3 2.8 6.2E-05 36.4 14.0 152 158-343 82-252 (316)
387 PF08728 CRT10: CRT10; InterP 94.1 1.5 3.4E-05 43.0 13.5 170 122-306 39-246 (717)
388 PF07569 Hira: TUP1-like enhan 94.0 0.41 8.9E-06 40.3 8.6 65 243-307 18-96 (219)
389 KOG3630 Nuclear pore complex, 93.9 0.34 7.5E-06 49.1 8.9 107 235-347 100-221 (1405)
390 PF05096 Glu_cyclase_2: Glutam 93.9 3.9 8.4E-05 35.2 18.1 105 236-343 130-249 (264)
391 PF10313 DUF2415: Uncharacteri 93.8 0.36 7.7E-06 28.7 5.6 31 236-266 1-34 (43)
392 KOG1916 Nuclear protein, conta 93.6 0.12 2.6E-06 51.0 5.1 153 119-306 128-323 (1283)
393 PF07569 Hira: TUP1-like enhan 93.5 0.85 1.8E-05 38.4 9.6 68 125-193 14-97 (219)
394 KOG2280 Vacuolar assembly/sort 93.4 4 8.6E-05 40.0 14.8 161 112-274 72-255 (829)
395 PF06433 Me-amine-dh_H: Methyl 93.4 5.7 0.00012 35.5 18.9 71 238-309 240-323 (342)
396 KOG4441 Proteins containing BT 93.1 5.9 0.00013 38.6 16.0 95 246-347 427-534 (571)
397 PF00930 DPPIV_N: Dipeptidyl p 93.0 0.47 1E-05 43.1 8.1 70 235-305 42-130 (353)
398 PF10313 DUF2415: Uncharacteri 93.0 0.4 8.6E-06 28.5 4.8 32 162-193 1-35 (43)
399 PHA02713 hypothetical protein; 93.0 6.6 0.00014 38.2 16.2 83 258-346 433-523 (557)
400 PF15390 DUF4613: Domain of un 93.0 7.8 0.00017 37.1 15.5 111 124-265 57-186 (671)
401 KOG2377 Uncharacterized conser 93.0 4.7 0.0001 37.3 13.7 104 234-343 65-172 (657)
402 PF10168 Nup88: Nuclear pore c 93.0 2.8 6.1E-05 41.8 13.7 92 162-267 85-181 (717)
403 COG3490 Uncharacterized protei 92.8 6 0.00013 34.3 16.9 173 131-344 45-245 (366)
404 PF07995 GSDH: Glucose / Sorbo 92.6 3 6.4E-05 37.6 12.4 107 237-345 3-134 (331)
405 COG3204 Uncharacterized protei 92.1 5.8 0.00013 34.5 12.6 110 234-343 84-199 (316)
406 PF14761 HPS3_N: Hermansky-Pud 92.1 6.1 0.00013 32.8 14.7 129 128-267 22-165 (215)
407 PRK13684 Ycf48-like protein; P 92.1 8.9 0.00019 34.6 18.5 104 235-343 214-321 (334)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 91.8 2.7 5.9E-05 38.9 11.3 75 235-309 307-401 (415)
409 PF10647 Gmad1: Lipoprotein Lp 91.7 7.9 0.00017 33.3 20.3 145 128-302 30-192 (253)
410 TIGR03606 non_repeat_PQQ dehyd 91.7 12 0.00025 35.3 17.0 32 162-193 30-61 (454)
411 cd00216 PQQ_DH Dehydrogenases 91.4 13 0.00029 35.4 19.2 66 133-199 61-136 (488)
412 PF08728 CRT10: CRT10; InterP 90.8 1.5 3.2E-05 43.2 8.8 104 132-264 113-245 (717)
413 COG5167 VID27 Protein involved 90.8 4.4 9.6E-05 38.0 11.3 60 279-344 564-623 (776)
414 PF11715 Nup160: Nucleoporin N 90.8 1.1 2.4E-05 43.4 8.2 38 237-274 216-257 (547)
415 PHA03098 kelch-like protein; P 90.8 15 0.00032 35.5 15.9 64 128-193 290-368 (534)
416 TIGR02604 Piru_Ver_Nterm putat 90.5 4.4 9.6E-05 37.0 11.5 107 236-343 14-142 (367)
417 PF10168 Nup88: Nuclear pore c 90.3 5.5 0.00012 39.8 12.5 72 236-308 85-181 (717)
418 COG3490 Uncharacterized protei 90.1 8.3 0.00018 33.5 11.6 101 238-343 70-180 (366)
419 PF12657 TFIIIC_delta: Transcr 90.0 2.4 5.2E-05 34.2 8.2 29 279-307 87-122 (173)
420 PHA02713 hypothetical protein; 89.8 4.7 0.0001 39.2 11.5 61 246-307 463-534 (557)
421 PLN00033 photosystem II stabil 89.7 17 0.00037 33.7 15.7 105 235-346 280-391 (398)
422 PF14781 BBS2_N: Ciliary BBSom 89.2 8.2 0.00018 29.4 11.5 113 167-306 4-125 (136)
423 TIGR02276 beta_rpt_yvtn 40-res 88.7 3.2 6.9E-05 24.0 6.3 32 245-276 1-33 (42)
424 PF07995 GSDH: Glucose / Sorbo 88.4 14 0.0003 33.3 12.8 26 163-189 3-28 (331)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.2 26 0.00056 33.9 16.7 54 257-310 441-494 (527)
426 PF05694 SBP56: 56kDa selenium 87.5 24 0.00053 32.8 16.7 88 256-343 221-330 (461)
427 KOG4499 Ca2+-binding protein R 86.9 18 0.00039 30.6 15.3 98 238-341 160-271 (310)
428 PF11715 Nup160: Nucleoporin N 86.5 4 8.7E-05 39.5 8.8 38 162-199 215-256 (547)
429 PF00930 DPPIV_N: Dipeptidyl p 86.4 25 0.00055 31.9 14.9 98 240-343 239-346 (353)
430 PF12657 TFIIIC_delta: Transcr 85.9 8.3 0.00018 31.0 9.0 31 236-266 86-122 (173)
431 TIGR03606 non_repeat_PQQ dehyd 85.8 32 0.00069 32.4 15.3 110 234-345 28-166 (454)
432 KOG4441 Proteins containing BT 85.2 39 0.00086 33.0 15.4 93 246-346 380-486 (571)
433 KOG4460 Nuclear pore complex, 85.2 16 0.00035 34.5 11.2 91 163-268 105-201 (741)
434 PF14761 HPS3_N: Hermansky-Pud 84.5 22 0.00048 29.6 16.0 64 278-344 135-205 (215)
435 KOG2247 WD40 repeat-containing 84.4 0.16 3.5E-06 46.7 -1.7 135 164-340 37-175 (615)
436 PF08801 Nucleoporin_N: Nup133 84.2 19 0.0004 33.7 11.8 30 278-307 190-220 (422)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 83.4 19 0.00041 33.5 11.1 37 159-195 305-341 (415)
438 KOG2377 Uncharacterized conser 83.1 33 0.00071 32.0 12.0 117 160-306 65-185 (657)
439 KOG4460 Nuclear pore complex, 82.5 17 0.00036 34.5 10.1 72 236-307 104-199 (741)
440 KOG3522 Predicted guanine nucl 81.9 9.8 0.00021 37.9 8.9 142 135-308 549-699 (925)
441 KOG1897 Damage-specific DNA bi 81.3 70 0.0015 32.9 20.8 211 123-334 115-363 (1096)
442 PF05694 SBP56: 56kDa selenium 80.5 31 0.00067 32.1 11.1 65 279-343 313-392 (461)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.4 25 0.00054 34.0 11.3 115 173-310 69-193 (527)
444 KOG1900 Nuclear pore complex, 78.8 28 0.00061 36.7 11.3 143 140-309 96-275 (1311)
445 TIGR03074 PQQ_membr_DH membran 78.3 58 0.0013 33.1 13.3 63 247-310 260-348 (764)
446 PF14583 Pectate_lyase22: Olig 76.7 50 0.0011 30.3 11.2 45 241-285 86-130 (386)
447 PF14727 PHTB1_N: PTHB1 N-term 76.4 67 0.0014 30.0 15.4 49 290-345 147-195 (418)
448 smart00564 PQQ beta-propeller 76.4 7.6 0.00016 21.0 4.1 25 248-272 7-31 (33)
449 PRK10115 protease 2; Provision 76.3 89 0.0019 31.4 17.7 111 162-306 127-255 (686)
450 PF12341 DUF3639: Protein of u 75.2 8.9 0.00019 20.3 3.7 24 125-148 3-26 (27)
451 KOG1983 Tomosyn and related SN 75.0 1E+02 0.0023 32.4 14.5 28 122-149 36-63 (993)
452 PF10214 Rrn6: RNA polymerase 74.3 70 0.0015 32.6 12.9 127 162-307 146-277 (765)
453 PRK13613 lipoprotein LpqB; Pro 73.8 96 0.0021 30.6 17.1 65 279-343 456-525 (599)
454 COG1520 FOG: WD40-like repeat 73.7 49 0.0011 30.2 11.0 62 246-308 111-173 (370)
455 PF14779 BBS1: Ciliary BBSome 72.3 50 0.0011 28.5 9.6 71 233-303 174-255 (257)
456 PF13449 Phytase-like: Esteras 71.4 77 0.0017 28.4 17.6 103 237-341 86-231 (326)
457 PF01011 PQQ: PQQ enzyme repea 71.1 12 0.00027 21.3 4.2 27 249-275 2-28 (38)
458 PHA02790 Kelch-like protein; P 71.1 98 0.0021 29.5 15.3 90 246-345 362-456 (480)
459 PF10214 Rrn6: RNA polymerase 70.7 1.3E+02 0.0028 30.7 19.6 95 236-335 146-257 (765)
460 COG5167 VID27 Protein involved 70.5 19 0.00041 34.0 7.1 61 133-194 573-635 (776)
461 KOG1897 Damage-specific DNA bi 70.2 1.4E+02 0.003 30.9 23.6 217 124-346 354-605 (1096)
462 TIGR03074 PQQ_membr_DH membran 69.9 1.3E+02 0.0029 30.6 17.0 55 256-310 413-481 (764)
463 PF14583 Pectate_lyase22: Olig 69.8 92 0.002 28.6 15.5 205 132-344 46-302 (386)
464 COG3823 Glutamine cyclotransfe 69.5 65 0.0014 26.9 13.9 21 322-342 226-247 (262)
465 PHA03098 kelch-like protein; P 69.0 1.1E+02 0.0025 29.4 14.3 61 246-307 437-512 (534)
466 PF10433 MMS1_N: Mono-function 68.6 1.1E+02 0.0024 29.2 17.8 76 257-334 427-503 (504)
467 COG4590 ABC-type uncharacteriz 68.4 18 0.00039 33.6 6.5 150 157-342 216-375 (733)
468 PF11635 Med16: Mediator compl 67.2 1.5E+02 0.0033 30.2 17.9 69 278-346 260-342 (753)
469 PRK13615 lipoprotein LpqB; Pro 66.1 1.4E+02 0.0029 29.2 14.9 143 165-343 337-488 (557)
470 PRK13684 Ycf48-like protein; P 65.5 1E+02 0.0023 27.7 19.4 104 235-343 172-278 (334)
471 KOG3616 Selective LIM binding 64.8 20 0.00044 35.5 6.3 34 162-195 15-48 (1636)
472 PRK10115 protease 2; Provision 63.4 1.7E+02 0.0037 29.4 22.3 66 128-193 133-209 (686)
473 PF02333 Phytase: Phytase; In 62.8 1.3E+02 0.0028 27.8 13.9 141 170-345 65-228 (381)
474 PF07676 PD40: WD40-like Beta 62.2 27 0.00058 19.7 5.6 29 275-303 6-38 (39)
475 KOG1896 mRNA cleavage and poly 61.5 2.3E+02 0.0049 30.3 13.0 125 143-303 1065-1210(1366)
476 PF07250 Glyoxal_oxid_N: Glyox 61.4 38 0.00083 28.9 6.9 86 259-345 48-138 (243)
477 PF14727 PHTB1_N: PTHB1 N-term 61.1 1.4E+02 0.0031 27.8 19.3 172 134-308 146-362 (418)
478 PF14781 BBS2_N: Ciliary BBSom 60.5 75 0.0016 24.4 13.1 65 135-200 12-90 (136)
479 KOG1900 Nuclear pore complex, 60.4 1.2E+02 0.0027 32.3 11.2 70 275-346 176-264 (1311)
480 PRK13614 lipoprotein LpqB; Pro 59.4 1.8E+02 0.004 28.5 17.6 64 279-343 435-504 (573)
481 COG5276 Uncharacterized conser 58.9 1.3E+02 0.0028 26.6 17.0 141 161-343 86-232 (370)
482 PF13570 PQQ_3: PQQ-like domai 57.1 35 0.00076 19.5 5.0 19 288-306 21-39 (40)
483 COG4590 ABC-type uncharacteriz 56.8 91 0.002 29.3 8.7 107 133-273 280-394 (733)
484 PF11635 Med16: Mediator compl 56.7 2.3E+02 0.0051 28.9 13.2 68 234-301 258-345 (753)
485 TIGR03118 PEPCTERM_chp_1 conse 54.6 1.6E+02 0.0034 26.2 13.1 28 164-191 25-52 (336)
486 PHA02790 Kelch-like protein; P 52.9 2.1E+02 0.0046 27.2 12.9 57 246-306 407-470 (480)
487 PF01731 Arylesterase: Arylest 51.8 80 0.0017 22.1 6.1 50 143-193 36-86 (86)
488 COG5290 IkappaB kinase complex 50.9 98 0.0021 31.3 8.4 94 165-289 250-348 (1243)
489 KOG2280 Vacuolar assembly/sort 50.9 2.8E+02 0.006 28.0 17.2 51 143-194 64-115 (829)
490 PF05935 Arylsulfotrans: Aryls 50.5 2.3E+02 0.005 27.0 12.4 40 237-276 272-312 (477)
491 KOG2109 WD40 repeat protein [G 50.2 11 0.00024 36.5 2.0 88 259-347 297-391 (788)
492 PF12768 Rax2: Cortical protei 49.8 1.8E+02 0.0039 25.5 11.9 71 234-305 35-122 (281)
493 PF08801 Nucleoporin_N: Nup133 47.6 2.4E+02 0.0052 26.3 11.9 32 236-267 190-221 (422)
494 PF01436 NHL: NHL repeat; Int 46.5 44 0.00095 17.5 4.0 25 238-262 4-28 (28)
495 PF12768 Rax2: Cortical protei 45.7 2.1E+02 0.0046 25.1 10.8 52 143-194 16-75 (281)
496 COG5276 Uncharacterized conser 44.9 2.2E+02 0.0049 25.2 18.3 133 123-289 86-225 (370)
497 PF13449 Phytase-like: Esteras 44.2 2.4E+02 0.0051 25.3 22.5 166 163-346 86-310 (326)
498 PF05096 Glu_cyclase_2: Glutam 43.9 2.2E+02 0.0047 24.8 14.9 129 135-294 102-249 (264)
499 PF10395 Utp8: Utp8 family; I 43.9 3.4E+02 0.0075 27.1 16.0 32 161-192 129-160 (670)
500 KOG0260 RNA polymerase II, lar 41.8 1.3E+02 0.0028 31.9 7.9 70 29-105 1484-1553(1605)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=253.74 Aligned_cols=196 Identities=18% Similarity=0.298 Sum_probs=180.0
Q ss_pred ceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
.++.++.+|.+.|.++.|. +..++||+.||+|++|+.. ..+..+.+|...|..++|+|+|++|+|++.|.+-|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 4688999999999999975 4489999999999999855 568899999999999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
||++++....... +|...|.+++|++||.++++|+.|..-+|||++++
T Consensus 288 WD~~tk~ElL~QE--------------------------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 288 WDLETKSELLLQE--------------------------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG 335 (459)
T ss_pred cccccchhhHhhc--------------------------------ccccccceeEecCCCceeeccCccchhheeecccC
Confidence 9999987554433 69999999999999999999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSSD 345 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~D 345 (347)
+++..+.+|...|..|.|+|+| .||||+.|++++|||++... .+.++.+|..-|+.|+|.| .|.+|+++|.|
T Consensus 336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------cceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999 89999999999999998433 5888999999999999998 67999999999
Q ss_pred CC
Q 043707 346 GL 347 (347)
Q Consensus 346 G~ 347 (347)
++
T Consensus 410 ~t 411 (459)
T KOG0272|consen 410 NT 411 (459)
T ss_pred cc
Confidence 75
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-34 Score=245.90 Aligned_cols=270 Identities=20% Similarity=0.314 Sum_probs=209.6
Q ss_pred CCCCCCCCCccccCCCCCCCCC----CCCCCCC-CCCCCCCCcccccc--------------cceeEeeeeccccEEEEe
Q 043707 70 TPTSGEASPYLMSPWNNQPVSP----YTKSPWL-MPPYSPNENLLSSC--------------NGLIGSIVRKEGHIYSLA 130 (347)
Q Consensus 70 ~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~-~~~~~p~~~~~~~~--------------~~~i~~l~~h~~~V~~l~ 130 (347)
.++...+-+.++..|.....-| .....|. ...|+|+|+.+++. ......|.+|...|++++
T Consensus 128 ~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~La 207 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALA 207 (480)
T ss_pred ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEe
Confidence 3555666678888887622222 1123343 34799999887653 235678999999999999
Q ss_pred ec-------CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee-
Q 043707 131 AS-------GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR- 200 (347)
Q Consensus 131 ~~-------~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~- 200 (347)
|. .++|++++.||.|+|||+. +++..+.+|+.+|+|++|-.+| +|++|+.|++|++|+...+.......
T Consensus 208 wep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 208 WEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred ecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence 75 4589999999999999955 5788999999999999998877 99999999999999998865321110
Q ss_pred -----------------eccc-c------------------------cccceEEeccCCCeEEEEeecc----eeeeeec
Q 043707 201 -----------------VGSL-P------------------------TFKDYVKSSVNPKNYVEVRRNR----NVLKIRH 234 (347)
Q Consensus 201 -----------------~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h 234 (347)
.+.+ + ...+.+.+..+...++-..... .....+|
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 0000 0 0011233333333333222111 1245689
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~ 313 (347)
...|+.+.|+||+.++++++.|..|++||.++|+.+.+|++|-++|..++|+.|. +|++|+.|.+++||++++.+
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---- 442 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---- 442 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee----
Confidence 9999999999999999999999999999999999999999999999999999997 88999999999999998443
Q ss_pred eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+.+.+.+|...|.++.|+|||..+++|+.|.
T Consensus 443 --l~~DLpGh~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 443 --LKQDLPGHADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred --ecccCCCCCceEEEEEecCCCceeecCCCce
Confidence 7889999999999999999999999999985
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-34 Score=240.14 Aligned_cols=201 Identities=22% Similarity=0.337 Sum_probs=172.7
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
.-.++.+|.+.|.|+.|+ |..|++|+.|.++|+||. .....+.++|...|.|++|+|||+.|++|+.||+|++||-
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 456788999999999875 679999999999999995 4668889999999999999999999999999999999999
Q ss_pred CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-----CCCEEEEEeCCCcEEEEeCC
Q 043707 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-----EQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~vwdl~ 265 (347)
+++++..... .+|...|++++|.| ..++|++++.||.++|||+.
T Consensus 187 ktg~~~g~~l-------------------------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 187 KTGQQIGRAL-------------------------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CCCCcccccc-------------------------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 9887543322 25999999999987 46799999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc-----------------------------------
Q 043707 266 DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK----------------------------------- 310 (347)
Q Consensus 266 ~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~----------------------------------- 310 (347)
.++++..+.+|..+|+|+.|.-+++|++|+.|++|++|+...+.-
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence 999999999999999999999999999999999999999864210
Q ss_pred --------------------------------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 311 --------------------------------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 311 --------------------------------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.....++..+.+|+.-|+.+.|+||+++||++|.|.
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 001123445678888999999999999999999875
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-32 Score=250.54 Aligned_cols=196 Identities=19% Similarity=0.381 Sum_probs=178.0
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+...++.+|.++|+...+ +.++|+++++|++||+|.+. ..+..+++|..+|++++|+|.|-+||||+.|++-++|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 4567779999999998876 56799999999999999854 5677889999999999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
..+...+... +.+|...|.|+.|+|+..++++|+.|.++++||+.+|.
T Consensus 521 s~d~~~PlRi--------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 521 STDHNKPLRI--------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred ecccCCchhh--------------------------------hcccccccceEEECCcccccccCCCCceEEEEEcCCCc
Confidence 9887553222 22699999999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++.|.+|.++|.+++|+|+| +|++|+.||.|++||+..+. ++..+.+|.+.|.+|.|+.+|..||+||.|.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------LVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------chhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 999999999999999999999 99999999999999998543 7889999999999999999999999999986
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-33 Score=237.42 Aligned_cols=196 Identities=23% Similarity=0.271 Sum_probs=178.4
Q ss_pred ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
.++..|.+|...|..++| +|++|+|++.|.+-++||+. .++....+|...|.+++|.|||..++||+.|..-||||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 578899999999988775 69999999999999999965 44666789999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
+++++.+.. +.+|..+|..|+|+|+|..|++|+.|++++|||++..++
T Consensus 332 lRtgr~im~--------------------------------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 332 LRTGRCIMF--------------------------------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred cccCcEEEE--------------------------------ecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 999974322 236999999999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCC-C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 270 LESINAHDDAINSVVAGFD-S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~-~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+.++.+|.+-|+.|.|.|+ | +|++++.|++++||..+. ..+++.+.+|++.|.++..++++.++++++.|.+
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC------cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 9999999999999999995 4 999999999999998874 3489999999999999999999999999999975
No 6
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-31 Score=232.97 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=184.6
Q ss_pred ccEEEEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
..|++++|+ |.+||+|..||.+++|+.. .....+..|+++|.++.|+..|++|++++.||++.+||..++.......
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 359999997 8899999999999999954 6678889999999999999999999999999999999999887665555
Q ss_pred ecccccc-------cceEEeccCCCeEE-EEe-ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 201 VGSLPTF-------KDYVKSSVNPKNYV-EVR-RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 201 ~~~~~~~-------~~~~~~~~~~~~~~-~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
....+.. ..|+.+..++...+ .+. ......+.+|.+.|.+|.|+|.+.+|++++.|++++||......+..
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 5544422 23344444433333 222 33445677899999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEeCCCC----------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 272 SINAHDDAINSVVAGFDS----------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~----------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
.+.+|...|..+.|+|.+ .+++++.|++|++||+..+ .++..+..|+.+|.+|+|+|+|++||+
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCCceEEEEecCCCcEEEe
Confidence 999999999999999964 7899999999999999844 378889999999999999999999999
Q ss_pred ecCCC
Q 043707 342 GSSDG 346 (347)
Q Consensus 342 gs~DG 346 (347)
|+.||
T Consensus 470 Gs~dg 474 (524)
T KOG0273|consen 470 GSLDG 474 (524)
T ss_pred cCCCC
Confidence 99998
No 7
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=225.02 Aligned_cols=229 Identities=19% Similarity=0.321 Sum_probs=182.9
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccceeEeeeeccccEEEEeecC---CEEEEecCCCcEEEEeCC-----CcceeeecC
Q 043707 89 VSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNL-----KEFSGFKSN 160 (347)
Q Consensus 89 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~~---~~l~tg~~dg~I~vwd~~-----~~~~~~~~h 160 (347)
+..+...+.+...-.|....-.....++.++.+|++.-++|+|++ ..|++|..-+.|++|... .....|.+|
T Consensus 177 V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH 256 (440)
T KOG0302|consen 177 VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH 256 (440)
T ss_pred EEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccccc
Confidence 444444444444444444333356678999999999999999985 368899999999999743 234567789
Q ss_pred CCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 161 SGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 161 ~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
+..|..|+|+| +...|++|+.||+|+|||++.+........ ..|...|+
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~------------------------------kAh~sDVN 306 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST------------------------------KAHNSDVN 306 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe------------------------------eccCCcee
Confidence 99999999999 567999999999999999998854332222 25999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC---CEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc----
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISD---CKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK---- 310 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~---~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~---- 310 (347)
.|+|+....+|++|+.||+++|||+|+ ++++..|+.|..+|++|.|+|.. .|++++.|.+|.+||+.....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999986 46889999999999999999864 999999999999999986543
Q ss_pred ------cceeeehhhhhccC--CcEEEEEEccCC-CEEEEecCCCC
Q 043707 311 ------GTKHFLAQVLLKQE--NAITALAVNQES-AVVYCGSSDGL 347 (347)
Q Consensus 311 ------~~~~~~~~~~~~h~--~~V~~l~~~p~~-~~l~sgs~DG~ 347 (347)
.....+.+.++.|. ..|..|+|+++. .+|++.+.||+
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 11234566777884 469999999976 89999999985
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-30 Score=210.55 Aligned_cols=194 Identities=23% Similarity=0.422 Sum_probs=170.0
Q ss_pred eeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCC-------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707 115 LIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNL-------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 184 (347)
+..++++|.+.|.+++- +.+.|++++.|.+|.+|++. ...+.+.+|...|..++.+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 56789999999999984 36799999999999999742 447789999999999999999999999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
+|+||+.+++.. ..+.+|...|.+++|++|.+.+++|+.|++|++|+.
T Consensus 87 lrlWDl~~g~~t--------------------------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 87 LRLWDLATGEST--------------------------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred EEEEEecCCcEE--------------------------------EEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 999999988522 223369999999999999999999999999999998
Q ss_pred CCCEEEEEEecC--CCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 265 SDCKCLESINAH--DDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 265 ~~~~~~~~~~~h--~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
. +.+..++..+ .+.|+|+.|+|.. +|++++.|++|++||++..+ +.+.+.+|.+-|+.++++|||..+
T Consensus 135 ~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~------l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 135 L-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ------LRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred c-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc------hhhccccccccEEEEEECCCCCEE
Confidence 6 4555555444 7899999999974 99999999999999998443 678889999999999999999999
Q ss_pred EEecCCCC
Q 043707 340 YCGSSDGL 347 (347)
Q Consensus 340 ~sgs~DG~ 347 (347)
++|+.||.
T Consensus 208 asGgkdg~ 215 (315)
T KOG0279|consen 208 ASGGKDGE 215 (315)
T ss_pred ecCCCCce
Confidence 99999983
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=7e-32 Score=230.45 Aligned_cols=216 Identities=19% Similarity=0.346 Sum_probs=185.0
Q ss_pred CCCCCCCCCCCCCCcccccc--cc-----------eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-Cccee
Q 043707 93 TKSPWLMPPYSPNENLLSSC--NG-----------LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-KEFSG 156 (347)
Q Consensus 93 ~~~~~~~~~~~p~~~~~~~~--~~-----------~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-~~~~~ 156 (347)
.+.|.....|.|+|+-+... .| .-..+.+|+..|.++.| ++.++++|+.+|.|++|+.. +.++.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 45666777899998754332 22 12235679999999997 58899999999999999954 55677
Q ss_pred eecCC-CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707 157 FKSNS-GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY 235 (347)
Q Consensus 157 ~~~h~-~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 235 (347)
++.|. ..|.+++|+|+..+|++|+.||+|+|||....+..... .+|.
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--------------------------------~GHg 222 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--------------------------------RGHG 222 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--------------------------------ccCC
Confidence 77766 89999999999999999999999999999876533222 2699
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH 314 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~ 314 (347)
-.|.|+.|+|...++++|+.|..|++||.+++.|+.++..|+..|..+.|.+++ +|++++.|..++++|+++..
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----- 297 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----- 297 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----
Confidence 999999999999999999999999999999999999999999999999999997 99999999999999999544
Q ss_pred eehhhhhccCCcEEEEEEccC-CCEEEEecCCC
Q 043707 315 FLAQVLLKQENAITALAVNQE-SAVVYCGSSDG 346 (347)
Q Consensus 315 ~~~~~~~~h~~~V~~l~~~p~-~~~l~sgs~DG 346 (347)
.++.+.+|...|+++.|+|- ..+|.+|+.||
T Consensus 298 -El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 298 -ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred -HHHHhhcchhhheeeccccccccceeeccCCC
Confidence 47889999999999999995 48899999998
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=203.85 Aligned_cols=233 Identities=17% Similarity=0.284 Sum_probs=186.2
Q ss_pred ccccCCCCCCC-----CCCCCCCCCCCCCCCCCcccccc--------------cceeEeeeeccccEEEEee--cCCEEE
Q 043707 79 YLMSPWNNQPV-----SPYTKSPWLMPPYSPNENLLSSC--------------NGLIGSIVRKEGHIYSLAA--SGDLLY 137 (347)
Q Consensus 79 ~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~--------------~~~i~~l~~h~~~V~~l~~--~~~~l~ 137 (347)
.+...|....- .++..+......-.|++..++.. ..++.++.+|+..|+++.| +|++++
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY 99 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE
Confidence 45566654222 22333333344566777666543 1278999999999998886 699999
Q ss_pred EecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccC
Q 043707 138 TGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN 216 (347)
Q Consensus 138 tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
||++||+++|||+... .+....|..+|+++..+|+...|++|.++|.|+|||+...........
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--------------- 164 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--------------- 164 (311)
T ss_pred ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---------------
Confidence 9999999999997643 333445779999999999999999999999999999987643222211
Q ss_pred CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CEEEEEEecCCCcEEEEEeCCCC-
Q 043707 217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD------CKCLESINAHDDAINSVVAGFDS- 289 (347)
Q Consensus 217 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~------~~~~~~~~~h~~~v~~i~~~~~~- 289 (347)
.....|.++...|||.+|+.+...|++++|++-. .+++.++++|...+..+.++||+
T Consensus 165 ----------------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 165 ----------------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred ----------------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence 2456799999999999999999999999999854 35788899999999999999998
Q ss_pred EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 290 ~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+|++++.|.+++||+.+..- .+...+.+|+.++++.+|+.|+++|++|+.|++
T Consensus 229 ~lat~ssdktv~iwn~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred EEEeecCCceEEEEecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 99999999999999998542 256778899999999999999999999999974
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=217.15 Aligned_cols=208 Identities=22% Similarity=0.409 Sum_probs=182.0
Q ss_pred CCCCCCCCCCCCcccccccceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEe
Q 043707 95 SPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIIT 170 (347)
Q Consensus 95 ~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~s 170 (347)
+.+..|.|...-++ -+.+.+|.+.|.|++.+ ..+|++|+.|++|+|||+. +...++.+|...|..++++
T Consensus 130 ~~~~rPeWHapwKl-------~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 130 SRMPRPEWHAPWKL-------YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred ccCCCccccCccee-------hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec
Confidence 34556666665554 56788999999998865 5699999999999999965 5567888999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL 250 (347)
Q Consensus 171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 250 (347)
+-..|+++++.|+.|+.||++..+.+.... +|-..|.|++.+|.-..|
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh--------------------------------GHlS~V~~L~lhPTldvl 250 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYH--------------------------------GHLSGVYCLDLHPTLDVL 250 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHHHhc--------------------------------cccceeEEEeccccceeE
Confidence 988899999999999999999887544332 699999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707 251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA 329 (347)
Q Consensus 251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~ 329 (347)
++|+.|.+++|||+++...+..+.+|..+|..+.+.| ++.+++|+.|++|++||++.+. ....+..|...|.+
T Consensus 251 ~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk------t~~tlt~hkksvra 324 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK------TMITLTHHKKSVRA 324 (460)
T ss_pred EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc------eeEeeecccceeeE
Confidence 9999999999999999999999999999999999987 5699999999999999998554 46677889999999
Q ss_pred EEEccCCCEEEEecCCCC
Q 043707 330 LAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 330 l~~~p~~~~l~sgs~DG~ 347 (347)
++.+|....+|+++.|.+
T Consensus 325 l~lhP~e~~fASas~dni 342 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDNI 342 (460)
T ss_pred EecCCchhhhhccCCccc
Confidence 999999999999998863
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=202.43 Aligned_cols=200 Identities=22% Similarity=0.329 Sum_probs=172.5
Q ss_pred eeEeeeeccccEEEEeecCC---EEEEecCCCcEEEEeCCC-----ccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 115 LIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNLK-----EFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~~---~l~tg~~dg~I~vwd~~~-----~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
+++.+.+|++.+..+++++. +||+|+.|+.|++|+... +... -.+|+..|..++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 47889999999999998644 899999999999999663 1111 23699999999999999999999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
.||.-..++.... ..+.+|...|.|++|+++|++|+++++|+.+-||.+.
T Consensus 86 ~Iw~k~~~efecv------------------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 86 VIWKKEDGEFECV------------------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred EEeecCCCceeEE------------------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 9998776543221 1233799999999999999999999999999999986
Q ss_pred C---CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 266 D---CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 266 ~---~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
. .+++..++.|...|..+.|+|.. +|++++.|++|++|+-.. .....+.+++.+|...|.+++|++.|..|++
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 3 46888999999999999999964 999999999999998864 2367789999999999999999999999999
Q ss_pred ecCCCC
Q 043707 342 GSSDGL 347 (347)
Q Consensus 342 gs~DG~ 347 (347)
++.|++
T Consensus 213 ~sdD~t 218 (312)
T KOG0645|consen 213 CSDDGT 218 (312)
T ss_pred ecCCcc
Confidence 999985
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-29 Score=206.03 Aligned_cols=195 Identities=19% Similarity=0.388 Sum_probs=165.6
Q ss_pred ccceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 112 CNGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
.+..++.+.+|.-.|..+. ++|++.++++.|+++++||+. +..+.|.+|...|.+++|++|.++|++|+.|.+|++
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl 131 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL 131 (315)
T ss_pred cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence 3446888999999887765 679999999999999999965 567889999999999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~ 265 (347)
|++........... .+.+.|+|+.|+|+ ..+|+++++|+++++||++
T Consensus 132 wnt~g~ck~t~~~~-------------------------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 132 WNTLGVCKYTIHED-------------------------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred eeecccEEEEEecC-------------------------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 99976532111110 14789999999997 7899999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+.+....+.+|.+.++.++++||| ++++|+.||.+.+||++..+. .+ ...|...|.+++|+|+.-.|+.+..
T Consensus 181 ~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~------ly-sl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 181 NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN------LY-SLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce------eE-eccCCCeEeeEEecCCceeEeeccC
Confidence 999999999999999999999999 889999999999999984432 22 2457789999999999877766543
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=9.2e-29 Score=203.27 Aligned_cols=200 Identities=19% Similarity=0.280 Sum_probs=172.9
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
.-++|++|.+.|+++.|. .++|++++.||.+.|||.. .....+.-....|..++|+|.|+.+++|+.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 458899999999999985 6799999999999999944 445566667789999999999999999999999999999
Q ss_pred CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~ 270 (347)
.+.+......+ ...+.+|.+.+.|+.|-.| ..|++++.|.++.+||+++++.+
T Consensus 127 s~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 127 STRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred cccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 86532111111 1112369999999999885 57889999999999999999999
Q ss_pred EEEecCCCcEEEEEeCC-CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 271 ESINAHDDAINSVVAGF-DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 271 ~~~~~h~~~v~~i~~~~-~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..|.+|.+.|.++.++| ++ .+++|+.|+..++||++.+. ..+.+.+|+..|++|+|.|+|.-+++|++|++
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCCCce
Confidence 99999999999999999 55 99999999999999999553 78999999999999999999999999999985
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2e-28 Score=201.27 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=185.9
Q ss_pred CCCCCCCCC-CCCCCCcccccccc--------------------eeEeeeeccccEEEEee-cCCEEEEecCCCcEEEEe
Q 043707 92 YTKSPWLMP-PYSPNENLLSSCNG--------------------LIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWK 149 (347)
Q Consensus 92 ~~~~~~~~~-~~~p~~~~~~~~~~--------------------~i~~l~~h~~~V~~l~~-~~~~l~tg~~dg~I~vwd 149 (347)
...+.|.+. .|+|.|++++ ++| ..+.+.+|++.+.|..+ +...|+|++.|.+.-+||
T Consensus 94 pl~s~WVMtCA~sPSg~~VA-cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVA-CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred ecCceeEEEEEECCCCCeEE-ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 446667655 7999998875 322 45668899999999987 566899999999999999
Q ss_pred CC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeec
Q 043707 150 NL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226 (347)
Q Consensus 150 ~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (347)
++ +....|.+|.+.|.++.++| +++.|++|+-|+..+|||++.+.....
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---------------------------- 224 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---------------------------- 224 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe----------------------------
Confidence 76 45778999999999999999 999999999999999999998853322
Q ss_pred ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC--CCcEEEEEeCCCC-EEEEEeCCCcEEEE
Q 043707 227 RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--DDAINSVVAGFDS-LVFTGSADGTVKVW 303 (347)
Q Consensus 227 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--~~~v~~i~~~~~~-~l~s~~~dg~I~vw 303 (347)
+.+|...|+.++|.|+|.-+++|++|+++++||+|..+.+..+... ..+|++++|+-.| +|++|..|..+.||
T Consensus 225 ----F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 225 ----FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred ----ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 2369999999999999999999999999999999999998888622 3579999999988 88889999999999
Q ss_pred EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 304 RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|.-.++ ....|.+|+..|++|..+|||..|++||.|.+
T Consensus 301 Dtlk~e------~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 301 DTLKGE------RVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred eccccc------eEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 996443 56778899999999999999999999998853
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=7.4e-29 Score=227.78 Aligned_cols=216 Identities=21% Similarity=0.362 Sum_probs=179.8
Q ss_pred CCCCCCCCCCCCcccccccc-------------eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceee
Q 043707 95 SPWLMPPYSPNENLLSSCNG-------------LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGF 157 (347)
Q Consensus 95 ~~~~~~~~~p~~~~~~~~~~-------------~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~ 157 (347)
.|.....|+|+.+++.++.+ .+-..++|..+|+++.++ |-++|||+.|++.++|. .....+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 34555578888888776654 345567999999998876 66999999999999996 45778999
Q ss_pred ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707 158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237 (347)
Q Consensus 158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 237 (347)
.+|-+.|.|+.|+|+..++++|+.|.+||+||+.++..... +.+|..+
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------------------------------F~GH~~~ 579 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------------------------------FTGHKGP 579 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------------------------------ecCCCCc
Confidence 99999999999999999999999999999999999864222 2379999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc-----
Q 043707 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG----- 311 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~----- 311 (347)
|.+|+|+|+|.+|++|+.||.|++||+..++.+..+.+|.+.|.+|.|+.+| .||+|+.|++|++||+......
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~ 659 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGH 659 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999743221
Q ss_pred -------------ceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 312 -------------TKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 312 -------------~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
....++..+.....+|..|.|.-..-.|+.|
T Consensus 660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 1122334455566789999998765555554
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.8e-28 Score=203.45 Aligned_cols=227 Identities=20% Similarity=0.305 Sum_probs=183.2
Q ss_pred ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCC---cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+...+++|+..|..+.++ |++|++++.|-.+++||..+ +++...+|...|.+++|-|.|.+|++++.|.+|+.|
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW 220 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE
Confidence 4678899999999999875 88999999999999999664 566778899999999999999999999999999999
Q ss_pred ecCCCCCceeeeec-------ccccccceEEeccCCCeEEEEe--ecc--eeeeeecCCCeeEEEEcCC----------C
Q 043707 189 KVSRKNPSVHKRVG-------SLPTFKDYVKSSVNPKNYVEVR--RNR--NVLKIRHYDAVSCLSLNAE----------Q 247 (347)
Q Consensus 189 d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~h~~~V~~l~~~~~----------~ 247 (347)
++.++......... .......++.++.+... +.++ ... ......|..+|.|++|.|. +
T Consensus 221 e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt-l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 221 ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT-LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce-EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 99998643322111 01111122233333222 2222 111 3455679999999999763 2
Q ss_pred -----CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh
Q 043707 248 -----GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL 321 (347)
Q Consensus 248 -----~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~ 321 (347)
.++.++++|++|++||+.++.|+.++.+|...|..++|+|.| +|+++..|+++++||++.. .+...+.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~------~cmk~~~ 373 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL------QCMKTLE 373 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc------eeeeccC
Confidence 489999999999999999999999999999999999999998 9999999999999999844 3677888
Q ss_pred ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 322 KQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 322 ~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.|..-|+++.|+.+..++++|+-|.+
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccce
Confidence 99999999999999999999998853
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.5e-29 Score=214.91 Aligned_cols=243 Identities=23% Similarity=0.277 Sum_probs=194.9
Q ss_pred CC-CCCCCCCCCccccCCCCCCC-CC----CCCCCCCCCCCCCCCccccccc--c----------eeEeeeecc-ccEEE
Q 043707 68 TR-TPTSGEASPYLMSPWNNQPV-SP----YTKSPWLMPPYSPNENLLSSCN--G----------LIGSIVRKE-GHIYS 128 (347)
Q Consensus 68 ~~-~~~~~~~s~~~~~~~~~~~~-~~----~~~~~~~~~~~~p~~~~~~~~~--~----------~i~~l~~h~-~~V~~ 128 (347)
|+ -++...++..-..+|+.+.- .. .-.+|.-...|++++..+.+.. + .++.+.+|. ..|.+
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRD 185 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhe
Confidence 44 33445566667788886111 00 1123333446788877654432 2 344555666 78999
Q ss_pred Eeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707 129 LAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 129 l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
++++ ...++++++||+|+|||.. ++...+.+|.-.|.+++|+|....|++|+.|..|++||.+++.++....
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh---- 261 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---- 261 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh----
Confidence 9876 4489999999999999955 4556779999999999999998899999999999999999997544332
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~ 284 (347)
+|...|..+.|++++++|++++.|..++++|+++.+.+.++++|+..|+++.
T Consensus 262 ----------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 262 ----------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT 313 (464)
T ss_pred ----------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec
Confidence 4999999999999999999999999999999999999999999999999999
Q ss_pred eCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 285 AGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 285 ~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|+|- ++|.+|+.||.|..|.+..+.. +...-.+|...|++++|+|-|..|++|+.|.+
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p-----~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEP-----LGEIPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred cccccccceeeccCCCceEEEecccccc-----ccCCCcccccceeeeeccccceeEeecCCCcc
Confidence 9996 4999999999999999974332 44556789999999999999999999999864
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=207.83 Aligned_cols=207 Identities=21% Similarity=0.391 Sum_probs=174.1
Q ss_pred CCCCCCcccccc------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC----------------
Q 043707 101 PYSPNENLLSSC------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN---------------- 150 (347)
Q Consensus 101 ~~~p~~~~~~~~------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~---------------- 150 (347)
.|..+|.+++.. +.++.++..|+++|+++.|+ |++|++++.||++.+||.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 677778776542 34777888899999999997 669999999999999983
Q ss_pred ---------------------------CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707 151 ---------------------------LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS 203 (347)
Q Consensus 151 ---------------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~ 203 (347)
.++..++.+|.+.|.+|.|.|.+.+|++|+.|++++||.+..........
T Consensus 322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~--- 398 (524)
T KOG0273|consen 322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ--- 398 (524)
T ss_pred cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh---
Confidence 12244577899999999999999999999999999999987654322211
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---------GLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---------~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
.|...|..+.|+|++ ..|++++.|+++++||+..+.++..|.
T Consensus 399 -----------------------------~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 399 -----------------------------AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred -----------------------------hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 488899999998864 478999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.|+.+|.+++|+|++ ++|+|+.||.|.+|+.++.+ +.+.+.+ .+.|..|+|+.+|.+|..+-+||
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~------l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK------LVKSYQG-TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh------eeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence 999999999999998 99999999999999998543 3444433 45699999999999999988887
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=7.1e-27 Score=192.85 Aligned_cols=233 Identities=19% Similarity=0.312 Sum_probs=184.4
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
++..+.+|+++|+.+.| +|.+|++|+.|..|.+|+.. +....+++|.++|..+.|.++++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 46677899999999886 57899999999999999844 44667889999999999999999999999999999999
Q ss_pred cCCCCCceeeeec-----ccc---cccceEEeccCCC--eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707 190 VSRKNPSVHKRVG-----SLP---TFKDYVKSSVNPK--NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (347)
Q Consensus 190 ~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 259 (347)
+++++........ .++ ....++.+..+.. .+++.+............+++++.|..++..+.+|+-|+.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 9999764433211 111 1112233322222 23344444455555567889999999999999999999999
Q ss_pred EEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc----------------------------
Q 043707 260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK---------------------------- 310 (347)
Q Consensus 260 ~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~---------------------------- 310 (347)
++||++..+.+..+.+|.+.|+.+..+++| ++.+-+.|.+|++||++.-..
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 999999999999999999999999999998 888999999999999873211
Q ss_pred ----------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 311 ----------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 311 ----------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
......+..+.+|.+.|.+++|+|....|.+++.|.+
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 0111234567899999999999999999999999864
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=186.60 Aligned_cols=201 Identities=18% Similarity=0.307 Sum_probs=172.4
Q ss_pred cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR 186 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~ 186 (347)
+...+++...++.|.++. ++++.||+++. -.||+||+. ..+..|.+|+.-|.++.|..+|+.++||++||++|
T Consensus 30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 446788877778898877 56778888876 579999954 46889999999999999999999999999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
|||++....... +.|..+|+++..+|+...|++|..+|.|+|||+.+
T Consensus 109 IWdlR~~~~qR~---------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 109 IWDLRSLSCQRN---------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EEeccCcccchh---------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 999998432211 13889999999999999999999999999999998
Q ss_pred CEEEEEEe-cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 267 CKCLESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 267 ~~~~~~~~-~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
..+...+- .....|.++...||| +++++...|..++|++-.........++..+..|..-++.+-++|++++||++|+
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 87766653 345689999999998 8888889999999999876666677788999999999999999999999999999
Q ss_pred CCC
Q 043707 345 DGL 347 (347)
Q Consensus 345 DG~ 347 (347)
|.+
T Consensus 236 dkt 238 (311)
T KOG0315|consen 236 DKT 238 (311)
T ss_pred Cce
Confidence 974
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=215.23 Aligned_cols=197 Identities=23% Similarity=0.407 Sum_probs=164.7
Q ss_pred eEeeeec-cccEEEEee--cCCEEEEecCCCcEEEEeCC--C--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 116 IGSIVRK-EGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--K--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 116 i~~l~~h-~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
...+..| ...|.++.+ +|++|++++.|+.|++|+.. + ....+.+|...|.+++|+|+++++++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4444444 556777664 68899999999999999852 3 455668899999999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
|+........ .+.+|...|++++|+|+++++++|+.|++|+|||+++++
T Consensus 231 d~~~~~~~~~-------------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 231 DLKDDGRNLK-------------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred eccCCCeEEE-------------------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 9944321111 122599999999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC--cEEEEEEccCCCEEEEecCC
Q 043707 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN--AITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~p~~~~l~sgs~D 345 (347)
++..+.+|.+.|++++|++++ +|++++.|+.|+|||+..+... +...+..+.. +++.++|+|++.+|+++..|
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 999999999999999999998 8889999999999999865431 3455555544 59999999999999999998
Q ss_pred CC
Q 043707 346 GL 347 (347)
Q Consensus 346 G~ 347 (347)
++
T Consensus 356 ~~ 357 (456)
T KOG0266|consen 356 RT 357 (456)
T ss_pred Ce
Confidence 64
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-27 Score=216.90 Aligned_cols=194 Identities=22% Similarity=0.357 Sum_probs=170.8
Q ss_pred eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC-------cce----eeecCCCCeeEEEEeCCCCEEEEEe
Q 043707 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK-------EFS----GFKSNSGLVKAIIITGDSNKIFTGH 180 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~-------~~~----~~~~h~~~V~~l~~sp~~~~l~s~~ 180 (347)
+++...+|++.|.+++.+ ..+|++++.|++|++|++.+ ... ....|...|+|++++|+...|+||+
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 456667899999999875 45999999999999998665 111 3457999999999999999999999
Q ss_pred CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
+|++.+||+++...... .+.+|...|.|+.|++..++++++|.|++|+
T Consensus 483 qDktaKiW~le~~~l~~--------------------------------vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLG--------------------------------VLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred cccceeeecccCceEEE--------------------------------EeeCCccceEEEEeccccceeEeccCCceEE
Confidence 99999999998443211 1236999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 261 VWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
||.+.++.|+++|.+|...|..+.|-.++ .|++++.||.|++|++.+.. +...+.+|...|++++.++...++
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e------C~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE------CEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh------hhhhhhhccceeEEEeecCcccee
Confidence 99999999999999999999999997776 99999999999999998543 799999999999999999999999
Q ss_pred EEecCCC
Q 043707 340 YCGSSDG 346 (347)
Q Consensus 340 ~sgs~DG 346 (347)
++|+.||
T Consensus 605 ~tgg~Dg 611 (775)
T KOG0319|consen 605 VTGGGDG 611 (775)
T ss_pred EecCCCe
Confidence 9999998
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3e-28 Score=204.62 Aligned_cols=191 Identities=23% Similarity=0.440 Sum_probs=156.7
Q ss_pred eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707 115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~ 192 (347)
.+..+.+|+|.|.|+.++.+.+++|+.|.+|+|||. .+.+.++.+|...|..+.|+.. ++++++.|.+++|||+..
T Consensus 229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccC
Confidence 455677888888888888888888888888888874 3567777788888888888654 888888888888888876
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~ 272 (347)
........ .+.+|...|+.+.|+. +++++++.|.+|++|++.+++++.+
T Consensus 307 ps~it~rr-----------------------------VLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRt 355 (499)
T KOG0281|consen 307 PTDITLRR-----------------------------VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRT 355 (499)
T ss_pred chHHHHHH-----------------------------HHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehh
Confidence 54221111 2336999999999964 5999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 273 INAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 273 ~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+.+|+..|.|+.+. +.++++|+.|.+|++||+..+. ++..+.+|+.-|.++.|. .+.|++|+.||+
T Consensus 356 l~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~------cLRvLeGHEeLvRciRFd--~krIVSGaYDGk 421 (499)
T KOG0281|consen 356 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 421 (499)
T ss_pred hhcccccceehhcc-CeEEEecCCCceEEEEeccccH------HHHHHhchHHhhhheeec--Cceeeeccccce
Confidence 99999999998874 5599999999999999998543 799999999999999995 688999999985
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=193.46 Aligned_cols=229 Identities=16% Similarity=0.240 Sum_probs=184.3
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
..-+.++..|++.|++++. +.++++||+.|..-.||+.. .....+.+|+..|.++.|+-+|.+|+||..+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3446788999999999884 56799999999999999954 4466788999999999999999999999999999999
Q ss_pred ecCCCCCceeee--------ecccccccceEEeccCCCeEEE-Eee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 189 KVSRKNPSVHKR--------VGSLPTFKDYVKSSVNPKNYVE-VRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 189 d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
++.++....... +...|....++....++..... +.. ....++.+|..+++|=.|.|+|+.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 999886543321 2233433333444444443332 222 345677789999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEec---------------------------------------------------------------
Q 043707 259 LKVWRISDCKCLESINA--------------------------------------------------------------- 275 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~--------------------------------------------------------------- 275 (347)
|++|++.+++++..+..
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999988766554431
Q ss_pred --------------------------------CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhcc
Q 043707 276 --------------------------------HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ 323 (347)
Q Consensus 276 --------------------------------h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h 323 (347)
|...|..+.|-+..+|++++.||.|+.||.+++. +...+.+|
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~------l~~~y~GH 367 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ------LKFTYTGH 367 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccc------eEEEEecC
Confidence 5667888888876689999999999999998664 68889999
Q ss_pred CCcEEEEEEccCCCEEEEecCCCC
Q 043707 324 ENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 324 ~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
...|.+++++|+.++++++|.|++
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCe
Confidence 999999999999999999999975
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-27 Score=190.62 Aligned_cols=230 Identities=17% Similarity=0.235 Sum_probs=178.1
Q ss_pred eeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 118 SIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
.+.+|+.+++.+.++ |++|.+++.|.++.||- ..+.+-++.+|+++|+|+...-+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 467899999999975 88999999999999995 55778899999999999999999999999999999999999999
Q ss_pred CCceeeeecccccc------cceEEeccCC-------CeEEEEee-------cc-eeeeeecCCCeeEEEEcCCCCEEEE
Q 043707 194 NPSVHKRVGSLPTF------KDYVKSSVNP-------KNYVEVRR-------NR-NVLKIRHYDAVSCLSLNAEQGLLYS 252 (347)
Q Consensus 194 ~~~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~-------~~-~~~~~~h~~~V~~l~~~~~~~~l~s 252 (347)
++......+..-.. ..++....+. ..++++.. .. ......+...++.+-|.|-+..|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 87554433321111 1111111111 12223331 11 1223346788999999999999999
Q ss_pred EeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc--------------------
Q 043707 253 GSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK-------------------- 310 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~-------------------- 310 (347)
|..||.|.+||++++ +.+.+.+.|...|+.|.+++|. ++++++.|.+-++||.++...
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD 244 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence 999999999999998 4566678899999999999997 999999999999999874321
Q ss_pred -------------------cce----------eeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 311 -------------------GTK----------HFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 311 -------------------~~~----------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+ ...+....+|-++|++|+|+|+|+..++|++||+
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 000 0112235689999999999999999999999995
No 27
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=191.53 Aligned_cols=198 Identities=19% Similarity=0.310 Sum_probs=171.1
Q ss_pred cceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 043707 113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIR 186 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~ 186 (347)
.++|+.++.|+.+|+++.++ +..+++++-|++|++|+. .+.+++|.+|...|+..+|+| .++.+++++.|++++
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLR 173 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEE
Confidence 45788999999999999986 568888999999999984 456889999999999999999 778999999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~ 265 (347)
+||++....... ...|...|.|+.|+. +...|++|+.|+.|++||++
T Consensus 174 lwdvr~~gk~~~--------------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 174 LWDVRSPGKFMS--------------------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred EEEecCCCceeE--------------------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 999986532111 124889999999998 67899999999999999999
Q ss_pred CCE-EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEE
Q 043707 266 DCK-CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYC 341 (347)
Q Consensus 266 ~~~-~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~s 341 (347)
..+ ++..+.+|.-+|..++|+|.. +|++++.|-+++|||...+.. +..+...|..-|..+.|++ +..++|+
T Consensus 222 ~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-----~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 222 NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-----AIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-----hhhhhhccceEEeccccccccCceeee
Confidence 764 788899999999999999975 999999999999999985443 6777778999999999998 5689999
Q ss_pred ecCCCC
Q 043707 342 GSSDGL 347 (347)
Q Consensus 342 gs~DG~ 347 (347)
++-|++
T Consensus 297 ~gWDe~ 302 (311)
T KOG0277|consen 297 TGWDEL 302 (311)
T ss_pred cccccc
Confidence 998864
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.6e-28 Score=209.90 Aligned_cols=203 Identities=14% Similarity=0.271 Sum_probs=173.3
Q ss_pred ccceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeC---CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 112 CNGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKN---LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
...++.++.+|+..|.++.|. +.+|++|+.|+.|+||+. .+++++|.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 567899999999999999964 679999999999999983 57799999999999999999999999999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl 264 (347)
++||+++++...... -...++|+.|+|++ +.+++|..|+.|+.||+
T Consensus 283 KlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 999999997554433 34567899999987 89999999999999999
Q ss_pred CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc---------------------------------
Q 043707 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK--------------------------------- 310 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~--------------------------------- 310 (347)
|+++.++.+..|-++|..|.|-+++ .+++.+.|+.++||+.+..-.
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 9999999999999999999999988 999999999999999874321
Q ss_pred -------cceeeehhhhhccC--CcEEEEEEccCCCEEEEecCCCC
Q 043707 311 -------GTKHFLAQVLLKQE--NAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 311 -------~~~~~~~~~~~~h~--~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+......+.+|. +--..+.|+|||++|++|..||.
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 00111223455663 34678999999999999999983
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-26 Score=207.95 Aligned_cols=197 Identities=22% Similarity=0.333 Sum_probs=173.4
Q ss_pred ceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
.+++++.--+-+|.+-.+ ..+++++|++|..|+||+. .+.+..|..|..-|.+|+.+|...+++|++.|-+|++||
T Consensus 46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence 356666666666766554 4569999999999999984 467889999999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
.+.+-.. ...+.+|...|.+++|+| |.+.+++++-|++|+||.+.+..
T Consensus 126 we~~wa~-------------------------------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 126 WENEWAC-------------------------------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred ccCceee-------------------------------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC
Confidence 9876321 122336999999999999 67899999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 269 CLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
+..++++|+..|+|+.+-+.+ +|++|+.|.+|+|||.++. .+++++.+|...|..+.|+|.-..+++||+|
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence 999999999999999998876 9999999999999999843 3899999999999999999999999999999
Q ss_pred CC
Q 043707 346 GL 347 (347)
Q Consensus 346 G~ 347 (347)
||
T Consensus 249 GT 250 (794)
T KOG0276|consen 249 GT 250 (794)
T ss_pred cc
Confidence 96
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=209.45 Aligned_cols=197 Identities=21% Similarity=0.385 Sum_probs=166.2
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
...|....+|-..+.++++ +|.+++||++||+|+|||... ++.+|..|+..|+.++|+..++.+++.+.||+||.|
T Consensus 340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 3456677789999999885 577999999999999999776 788999999999999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCC
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDC 267 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~ 267 (347)
|+...+.-..... ...-...|++..|.|.++..|+.|. .|.||++.+|
T Consensus 420 DlkRYrNfRTft~-------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 420 DLKRYRNFRTFTS-------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred eecccceeeeecC-------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9976642211111 1334567999999999999999875 4999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+.+..+.+|+++|.++.|+|++ .|++++.|.+|++||+-.... ...-..+...|++++|.|+|+.|+++..||
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~------~vEtl~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG------TVETLEIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc------eeeeEeeccceeEEEEcCCCCeEEEEEecc
Confidence 9999999999999999999998 999999999999999974322 111223566899999999999999999987
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=212.90 Aligned_cols=209 Identities=25% Similarity=0.490 Sum_probs=173.8
Q ss_pred CCCCCCccccccc-------------c--eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeC---CCcceeeecC
Q 043707 101 PYSPNENLLSSCN-------------G--LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKN---LKEFSGFKSN 160 (347)
Q Consensus 101 ~~~p~~~~~~~~~-------------~--~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~---~~~~~~~~~h 160 (347)
.|+++|..++... . +...+.+|...|.++.| +++++++|+.|++|+|||. ...++.+.+|
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH 245 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH 245 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC
Confidence 5677777654431 1 45666789999988886 5789999999999999997 2457889999
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC 240 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 240 (347)
...|++++|+|+++.+++|+.|++|||||+++++..... .+|.+.|++
T Consensus 246 ~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l--------------------------------~~hs~~is~ 293 (456)
T KOG0266|consen 246 STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL--------------------------------KGHSDGISG 293 (456)
T ss_pred CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee--------------------------------eccCCceEE
Confidence 999999999999999999999999999999986533222 259999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEecCCCc--EEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDA--INSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF 315 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~~h~~~--v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~ 315 (347)
++|++++++|++++.|+.|+|||+.+++ ++..+..+... ++++.|+|++ +++++..|+.+++||+....
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~------ 367 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK------ 367 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc------
Confidence 9999999999999999999999999999 67788777665 9999999998 99999999999999998443
Q ss_pred ehhhhhccCC---cEEEEEEccCCCEEEEecCCCC
Q 043707 316 LAQVLLKQEN---AITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 316 ~~~~~~~h~~---~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.......|.. .+.+...++.+.++++|+.|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence 4555566654 4555566789999999999973
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=183.30 Aligned_cols=194 Identities=18% Similarity=0.373 Sum_probs=168.7
Q ss_pred cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+....|..|+++|.++.++ |+|.++++.|.+|++|+.. ..++++.+|...|.+++.+.|...|++|+.|..|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 33467888999999999985 8899999999999999955 5588999999999999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-- 266 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-- 266 (347)
|+.+++.....+ +|...|+.+.|+.+...+++|+.|.++++||.+.
T Consensus 87 DV~TGkv~Rr~r--------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 87 DVNTGKVDRRFR--------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred EcccCeeeeecc--------------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 999997544333 6999999999999999999999999999999975
Q ss_pred CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 267 CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 267 ~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++++.+....+.|.+|... +..|++|+.||+++.||++.+. +..... ..+|++++|+++++++++++-|+
T Consensus 135 ~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~------l~sDy~--g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGT------LSSDYF--GHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred CCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecce------eehhhc--CCcceeEEecCCCCEEEEeeccc
Confidence 47888888888899999875 5689999999999999999553 233333 44999999999999999999887
Q ss_pred C
Q 043707 347 L 347 (347)
Q Consensus 347 ~ 347 (347)
+
T Consensus 206 t 206 (307)
T KOG0316|consen 206 T 206 (307)
T ss_pred e
Confidence 4
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=183.52 Aligned_cols=198 Identities=22% Similarity=0.366 Sum_probs=162.8
Q ss_pred eccccEEEEee--cCCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707 121 RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 121 ~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
+|+..|..+++ .|++|++|+-|.++.||... +++..+.+|...|.|++|+++|++||+|+.|+.|-||.+....
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 58888988887 68999999999999999744 6688899999999999999999999999999999999998554
Q ss_pred CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---CCEEEE
Q 043707 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLE 271 (347)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~---~~~~~~ 271 (347)
..... ..+..|...|..+.|+|...+|++++.|.+|++|+-. +..+++
T Consensus 139 Efec~-----------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~ 189 (312)
T KOG0645|consen 139 EFECI-----------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ 189 (312)
T ss_pred cEEEE-----------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence 21111 1122599999999999999999999999999999865 457999
Q ss_pred EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc-----------------------------c-------ce-
Q 043707 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK-----------------------------G-------TK- 313 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~-----------------------------~-------~~- 313 (347)
++.+|...|.+++|++.| .|++++.|++|+||.....-. . ..
T Consensus 190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~ 269 (312)
T KOG0645|consen 190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSW 269 (312)
T ss_pred EecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchH
Confidence 999999999999999988 999999999999998431100 0 00
Q ss_pred eeehhhhhccCCcEEEEEEccC-CCEEEEecCCCC
Q 043707 314 HFLAQVLLKQENAITALAVNQE-SAVVYCGSSDGL 347 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p~-~~~l~sgs~DG~ 347 (347)
..+...-..|...|++|+|+|. ..+|++|+.||+
T Consensus 270 ~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 270 NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred HHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 0011233468889999999995 689999999995
No 34
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=208.44 Aligned_cols=192 Identities=20% Similarity=0.296 Sum_probs=153.7
Q ss_pred eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC---------cceeeecCCCCeeEEEEeCCC-CEEEEEeCCCc
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK---------EFSGFKSNSGLVKAIIITGDS-NKIFTGHQDGK 184 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~---------~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~ 184 (347)
.+.+|.+.|++++|+ +++|++|+.|++|++||+.. .+..+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 467899999999975 56999999999999999642 355788999999999999975 69999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
|+|||+++++.... ...|...|.+++|+|++.+|++++.|++|+|||+
T Consensus 150 VrIWDl~tg~~~~~--------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 150 VNVWDVERGKAVEV--------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred EEEEECCCCeEEEE--------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence 99999987642211 1148899999999999999999999999999999
Q ss_pred CCCEEEEEEecCCCc-EEEEEeCCCC-EEEEEe----CCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCC
Q 043707 265 SDCKCLESINAHDDA-INSVVAGFDS-LVFTGS----ADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESA 337 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~-v~~i~~~~~~-~l~s~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~ 337 (347)
++++.+..+.+|.+. +..+.|.+++ .+++++ .|+.|++||++.... +......+ ...+....|++++.
T Consensus 198 rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----p~~~~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 198 RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----PYSTVDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----ceeEeccCCCCceEEEEEcCCCC
Confidence 999999999999765 3466788775 665543 489999999985443 22222222 34566778999999
Q ss_pred EEEEecC-CC
Q 043707 338 VVYCGSS-DG 346 (347)
Q Consensus 338 ~l~sgs~-DG 346 (347)
+|++|+. ||
T Consensus 273 ~L~lggkgDg 282 (493)
T PTZ00421 273 LLYIGSKGEG 282 (493)
T ss_pred EEEEEEeCCC
Confidence 9998874 76
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=5.4e-25 Score=193.96 Aligned_cols=151 Identities=18% Similarity=0.298 Sum_probs=112.4
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEe--CCCcceeee---cCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWK--NLKEFSGFK---SNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd--~~~~~~~~~---~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
.-.+++.|..-|.|+.+ +|+++++.+.||+|.+|| ..+.+..+. +|++.|.+|.|+||+++|+|++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 44566778889999885 688999999999999999 444455555 89999999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEE-----------eecc-eeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEV-----------RRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 255 (347)
||+.+.+.......... .....+.+.+....++.+ .... .....+|...|+++..++++.+|++|+.
T Consensus 262 WdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 99999876544433322 111222222222222222 2222 2334589999999999999999999999
Q ss_pred CCcEEEEeCCC
Q 043707 256 DKTLKVWRISD 266 (347)
Q Consensus 256 dg~i~vwdl~~ 266 (347)
||.|.-||..+
T Consensus 341 DG~I~~W~~~~ 351 (603)
T KOG0318|consen 341 DGHINSWDSGS 351 (603)
T ss_pred CceEEEEecCC
Confidence 99999998754
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.8e-26 Score=208.38 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=170.4
Q ss_pred EeeeeccccEEEEe-e-cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEE
Q 043707 117 GSIVRKEGHIYSLA-A-SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRI 187 (347)
Q Consensus 117 ~~l~~h~~~V~~l~-~-~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~v 187 (347)
..+.+|+..|.+++ + +|.+|+||+.|.++++|...+ ++....+|...|.+++++.. ...|++++.|++|++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 36789999999999 3 577999999999999997532 24566789999999999763 458999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|++...+........ ..+.....|...|+|++.+|+..++++|+.|++.+||++++.
T Consensus 439 W~l~~s~~~~~~~~~-----------------------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVL-----------------------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred ecCCCccccccccee-----------------------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 999873221110000 001112249999999999999999999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+.+..+.+|...|.++.|++.. .++|++.|++|+||.+.+. .+.+++.+|...|..+.|-.++..|++|++||
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------SClkT~eGH~~aVlra~F~~~~~qliS~~adG 569 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------SCLKTFEGHTSAVLRASFIRNGKQLISAGADG 569 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc------eeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence 9999999999999999999965 9999999999999999843 48999999999999999999999999999999
Q ss_pred C
Q 043707 347 L 347 (347)
Q Consensus 347 ~ 347 (347)
.
T Consensus 570 l 570 (775)
T KOG0319|consen 570 L 570 (775)
T ss_pred c
Confidence 4
No 37
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=8.1e-26 Score=196.06 Aligned_cols=201 Identities=20% Similarity=0.311 Sum_probs=162.4
Q ss_pred eEeeeeccccEEEEeecC---CEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCC
Q 043707 116 IGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQD 182 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~~---~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~D 182 (347)
-..|.+|+++-+.+.|+. ..|++|+.|++|++||+. .....+.+|...|..++|++ +...|++++.|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 447789999888899873 489999999999999943 22456889999999999999 67789999999
Q ss_pred CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 043707 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKV 261 (347)
Q Consensus 183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~v 261 (347)
+.+.|||+++........+ .+|...|.|++|+| ++.+||+|+.|++|.+
T Consensus 250 ~~L~iwD~R~~~~~~~~~~------------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L 299 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV------------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVAL 299 (422)
T ss_pred CeEEEEEcCCCCCCCcccc------------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence 9999999996321111111 15999999999999 5778999999999999
Q ss_pred EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcc--------ceeeehhhhhccCCcEEEE
Q 043707 262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKG--------TKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~h~~~V~~l 330 (347)
||+|+. +++.++.+|...|.+|.|+|.. .||+++.|+.+.|||+..-+.. ....++..-.+|...|.++
T Consensus 300 wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 300 WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred eechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 999986 4789999999999999999975 9999999999999999754331 1122334556788899999
Q ss_pred EEccCCC-EEEEecCCC
Q 043707 331 AVNQESA-VVYCGSSDG 346 (347)
Q Consensus 331 ~~~p~~~-~l~sgs~DG 346 (347)
.|+|+.. .|++.+.|+
T Consensus 380 sWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDN 396 (422)
T ss_pred cCCCCCCeEEEEecCCc
Confidence 9999884 566677665
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=201.70 Aligned_cols=196 Identities=21% Similarity=0.396 Sum_probs=171.5
Q ss_pred ceeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCCC---cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707 114 GLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNLK---EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI 187 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~~---~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v 187 (347)
..++.+.+|.+.|.|+...+. +++|+++|-+|++||..+ +.+.|.+|..-|.+++|.| |.+.|++|+.|++|+|
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 478999999999999986654 999999999999999764 4678999999999999999 7889999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA--EQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~vwdl~ 265 (347)
|.+....+.... .+|...|+|+.+-+ |..+|++|++|.+|+|||..
T Consensus 168 Wslgs~~~nfTl--------------------------------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 168 WSLGSPHPNFTL--------------------------------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred EEcCCCCCceee--------------------------------eccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 999876543332 26999999999987 45699999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+..|++++.+|...|..+.|+|.- ++++|++||+|+||+..+- .+..++.-....|++|+-.+.++.++.|.+
T Consensus 216 tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty------~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 216 TKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY------KLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred hHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce------ehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 999999999999999999999985 9999999999999998632 256666667789999999998898999887
Q ss_pred CCC
Q 043707 345 DGL 347 (347)
Q Consensus 345 DG~ 347 (347)
.|.
T Consensus 290 eg~ 292 (794)
T KOG0276|consen 290 EGS 292 (794)
T ss_pred CCc
Confidence 763
No 39
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.7e-24 Score=202.85 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=151.3
Q ss_pred eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC----------cceeeecCCCCeeEEEEeCCCCE-EEEEe
Q 043707 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK----------EFSGFKSNSGLVKAIIITGDSNK-IFTGH 180 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~----------~~~~~~~h~~~V~~l~~sp~~~~-l~s~~ 180 (347)
.+..+.+|.+.|.+++|+ +++|++|+.||+|+|||+.. ....+.+|...|.+++|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 567889999999999986 46999999999999999643 12357789999999999998765 57999
Q ss_pred CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
.|++|+|||+++++..... .|...|.+++|+++|.+|++++.|+.|+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i---------------------------------~~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQI---------------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred CCCeEEEEECCCCcEEEEE---------------------------------ecCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 9999999999877532111 2557899999999999999999999999
Q ss_pred EEeCCCCEEEEEEecCCCcEEEE-----EeCCCC-EEEEEeCCC----cEEEEEcccCCccceeeehhh--hhccCCcEE
Q 043707 261 VWRISDCKCLESINAHDDAINSV-----VAGFDS-LVFTGSADG----TVKVWRRELQGKGTKHFLAQV--LLKQENAIT 328 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h~~~v~~i-----~~~~~~-~l~s~~~dg----~I~vwd~~~~~~~~~~~~~~~--~~~h~~~V~ 328 (347)
|||+++++.+.++.+|.+.+.+. .|++++ +|++++.|+ +|+|||++.... ++.. +..+.+.+.
T Consensus 193 IwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-----pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 193 IIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-----ALVTMSIDNASAPLI 267 (568)
T ss_pred EEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-----ceEEEEecCCccceE
Confidence 99999999999999998765433 234664 888877664 799999985443 2222 222333444
Q ss_pred EEEEccCCCEEEEecCCCC
Q 043707 329 ALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 329 ~l~~~p~~~~l~sgs~DG~ 347 (347)
.....+++.++++|+.|++
T Consensus 268 p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred EeeeCCCCCEEEEEECCCe
Confidence 4444556889999988874
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=3.5e-25 Score=188.05 Aligned_cols=191 Identities=18% Similarity=0.330 Sum_probs=163.7
Q ss_pred EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---------------------------CcceeeecCCCCeeEE
Q 043707 117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---------------------------KEFSGFKSNSGLVKAI 167 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---------------------------~~~~~~~~h~~~V~~l 167 (347)
..-.+|++.|-+++. +|..+++|+.|..|.||+.. ..+..+.+|+++|.++
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 334489999999884 68899999999999999710 1244578999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC
Q 043707 168 IITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247 (347)
Q Consensus 168 ~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 247 (347)
.|++ ...+++++.|.+|+.||+.++....... ....+.|++.+|..
T Consensus 267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---------------------------------~~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---------------------------------TNKSLNCISYSPLS 312 (423)
T ss_pred EEcC-CCceEeecccceEEEEEeecccceeeee---------------------------------cCcceeEeeccccc
Confidence 9998 5599999999999999999986543332 55778999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCE---EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707 248 GLLYSGSWDKTLKVWRISDCK---CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK 322 (347)
Q Consensus 248 ~~l~s~s~dg~i~vwdl~~~~---~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 322 (347)
++|++|+.|..|++||.|++. ...+|.+|.+.|.++.|+|.. +|++|+.|+++++||++.... ++..+.+
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----plydI~~ 387 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----PLYDIAG 387 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-----cceeecc
Confidence 999999999999999998763 467889999999999999986 899999999999999996543 7888999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCC
Q 043707 323 QENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|...|.++.|. ++..|++||.|.+
T Consensus 388 h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 388 HNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred CCceEEEEecc-CCceEEeccCcce
Confidence 99999999998 5689999999863
No 41
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=179.52 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=158.2
Q ss_pred cccEEEEeec---CCEEEEecCCCcEEEEeCC---CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCC
Q 043707 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 123 ~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
++.++.++|+ .+.+++++.||+++|||.. .++..++.|...|.++.|++ ..+.+++++-|++|++|+..-++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 3457777775 4589999999999999954 56888999999999999999 677899999999999999876653
Q ss_pred ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
... ..+|...|....|+| ..+++++++.|+++++||++.......+.
T Consensus 140 v~T--------------------------------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 140 VQT--------------------------------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred eEe--------------------------------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 222 226999999999999 48899999999999999998765545599
Q ss_pred cCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707 275 AHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDG 346 (347)
Q Consensus 275 ~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG 346 (347)
+|...|.++.|+.- .+|+||+.|+.|++||++... .++..+.+|.-+|..|+|+|.. ..|++++.|=
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 99999999999864 399999999999999999654 3788889999999999999975 7888888873
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=5.8e-24 Score=187.49 Aligned_cols=230 Identities=19% Similarity=0.279 Sum_probs=168.9
Q ss_pred eeeeccccE--EEEeecCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCC----CcEEE
Q 043707 118 SIVRKEGHI--YSLAASGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQD----GKIRI 187 (347)
Q Consensus 118 ~l~~h~~~V--~~l~~~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~D----g~I~v 187 (347)
...+|...+ -.++|+|.++|+|...|+|||||..+. ...++.-.++|.+|+|++++++|+..++. |.+.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 344554443 445578899999999999999996542 33566778999999999999998887743 45677
Q ss_pred EecCCCCCc-----eeeeecccccccceEEeccCCCeEEEEeeccee----eeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 188 WKVSRKNPS-----VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV----LKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 188 wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
||--+..-. ....-..+...+-+-.......+.+.+..+... ....|..-|.|+.|+|||.++++.+.||+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 876543110 111111111222222222233333444333322 22358889999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEe---cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc------------------------
Q 043707 259 LKVWRISDCKCLESIN---AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK------------------------ 310 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~---~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~------------------------ 310 (347)
+.+||=.+++.+..+. +|++.|.+|.|+||+ .|++++.|.+++|||+.+...
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 9999999999999997 999999999999998 999999999999999975422
Q ss_pred -------------cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 311 -------------GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 311 -------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.....+++.+.+|...|+++..+|++.+|++|+.||.
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 0111245677899999999999999999999999984
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.5e-25 Score=177.69 Aligned_cols=224 Identities=17% Similarity=0.237 Sum_probs=180.1
Q ss_pred EeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEe
Q 043707 117 GSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd 189 (347)
+.+.+|.++|.+++| +|..|++|+.|+++++|++... -....+|.+.|..++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456678889999987 4889999999999999986543 234678999999999998 677999999999999999
Q ss_pred cCCCCCceeeeec-------ccccccceEEecc-CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707 190 VSRKNPSVHKRVG-------SLPTFKDYVKSSV-NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (347)
Q Consensus 190 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v 261 (347)
++.+++....... ..|....+..... +...+++.+..+..........+..++|+.++.+++....-|+|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 9998865443221 2233333332222 2223445555555555566777889999988888887777899999
Q ss_pred EeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707 262 WRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 262 wdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~ 340 (347)
......+++.++++|.....||.|+|+| +||+|+.|-.+.+||++ ...+++.+..+.-+|..|.|+.+|++||
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~------ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD------ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh------HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999 99999999999999997 2346778888999999999999999999
Q ss_pred EecCCC
Q 043707 341 CGSSDG 346 (347)
Q Consensus 341 sgs~DG 346 (347)
+||+|-
T Consensus 248 SaSEDh 253 (313)
T KOG1407|consen 248 SASEDH 253 (313)
T ss_pred ccCccc
Confidence 999984
No 44
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=192.54 Aligned_cols=193 Identities=21% Similarity=0.403 Sum_probs=161.2
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEe
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd 189 (347)
.++++...+..|+++++ +|++|++|+..|.|+|+|... .++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 34455566777888776 599999999999999999544 4778999999999999999 566788999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC- 267 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~- 267 (347)
+.+... ... ..+|.+.|.|.+|+|. ++++++|+.||+|++||++..
T Consensus 140 ~s~a~v--~~~------------------------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 140 LSTAYV--QAE------------------------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred cCCcEE--EEE------------------------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 988752 111 1259999999999995 568999999999999999987
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..+.++. |..+|..+.+-|.| .|+++ ....|+|||+-.+++ .+.....|...|||+++..++..|++||-||
T Consensus 188 ~~v~eln-hg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 188 SRVVELN-HGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ceeEEec-CCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 6667775 99999999999987 55554 567999999986665 5666666999999999999999999999997
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.8e-25 Score=188.17 Aligned_cols=241 Identities=18% Similarity=0.219 Sum_probs=179.3
Q ss_pred CCCCCCcccccccc----------------eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeee-c
Q 043707 101 PYSPNENLLSSCNG----------------LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFK-S 159 (347)
Q Consensus 101 ~~~p~~~~~~~~~~----------------~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~-~ 159 (347)
.|+++|+.+++..+ +.+++.+|..+|..+.|+ .++|++|+.|..+++||.... ...+. +
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence 68899999877542 688999999999888875 569999999999999995532 33322 2
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec--------ccccccceEEeccCCCeEEEEe-ecceee
Q 043707 160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTFKDYVKSSVNPKNYVEVR-RNRNVL 230 (347)
Q Consensus 160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (347)
|...+.+++|.|||..+++|+.|++|..||++.........+. -.+....++....+....+.-. .....-
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG 390 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence 4578999999999999999999999999999876432222111 1112222222222222211111 111111
Q ss_pred eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE--EeC--CCCEEEEEeCCCcEEEEEcc
Q 043707 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV--VAG--FDSLVFTGSADGTVKVWRRE 306 (347)
Q Consensus 231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i--~~~--~~~~l~s~~~dg~I~vwd~~ 306 (347)
.+.-..+|++++.+.+++++++.-.+..+++||+++.+.+..+.+|...-.-| +|. .+.++++|++|+.|+||+..
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 34466789999999999999999999999999999999999999997653333 332 23499999999999999998
Q ss_pred cCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCCC
Q 043707 307 LQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDGL 347 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG~ 347 (347)
.+. ++..+.+|...|++|+|+|.. .++|+||.|||
T Consensus 471 sgk------ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 471 SGK------LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred CCc------eeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 543 789999999999999999966 88999999996
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=8.8e-25 Score=185.67 Aligned_cols=235 Identities=20% Similarity=0.324 Sum_probs=179.5
Q ss_pred CCCCCCcccccccceeEeeeeccccEEEEeec-----CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEE
Q 043707 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIII 169 (347)
Q Consensus 101 ~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~ 169 (347)
.|.-...++...++.+..+.+|.++|.++.+- ...|++++.|.++++|... +....-++|...|.++..
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv 201 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV 201 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe
Confidence 45555666666777899999999999987752 3379999999999999743 224445599999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE
Q 043707 170 TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL 249 (347)
Q Consensus 170 sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 249 (347)
.+++.++++|+.|..|+||+...............+. ...........+.......+|.++|..+.|++ ...
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 9999999999999999999943332111111000000 00000001112223445668999999999998 778
Q ss_pred EEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707 250 LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT 328 (347)
Q Consensus 250 l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~ 328 (347)
++++++|.+|++||+.+++++.++.+. ..++++..+|.. +|++|+.|..|++||.+.+. .....+.+.+|...|.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GSVVSQSLIGHKNWVS 349 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCC---CceeEEeeecchhhhh
Confidence 999999999999999999999888754 568999999976 99999999999999999764 3456788999999999
Q ss_pred EEEEccCC-CEEEEecCCCC
Q 043707 329 ALAVNQES-AVVYCGSSDGL 347 (347)
Q Consensus 329 ~l~~~p~~-~~l~sgs~DG~ 347 (347)
++.|+|.. .+|++|+.||+
T Consensus 350 svkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred heecCCCCceEEEEEecCCe
Confidence 99999966 77999999985
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.6e-25 Score=202.35 Aligned_cols=234 Identities=22% Similarity=0.322 Sum_probs=187.1
Q ss_pred CCCCccccCCCCCCCCCCCCCC---CCCCCCCCCCccccc--c-----------cceeEeeeeccccEEEEe--ecCCEE
Q 043707 75 EASPYLMSPWNNQPVSPYTKSP---WLMPPYSPNENLLSS--C-----------NGLIGSIVRKEGHIYSLA--ASGDLL 136 (347)
Q Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~--~-----------~~~i~~l~~h~~~V~~l~--~~~~~l 136 (347)
++...+.+.|+.........-+ .+...|-|.+..+.. . ..++.++++|++.|+.++ ++++.+
T Consensus 390 Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 390 SGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred ecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 3334677888874343322222 122245565554322 1 236778889999999988 678899
Q ss_pred EEecCCCcEEEEeCC-------Ccce-------eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707 137 YTGSDSKNIRVWKNL-------KEFS-------GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG 202 (347)
Q Consensus 137 ~tg~~dg~I~vwd~~-------~~~~-------~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~ 202 (347)
+||+.|.+|++||.. ...+ ..-.-...|.|+.++|||++|+.+-.|.+|+||-+++-+.-
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf------ 543 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF------ 543 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee------
Confidence 999999999999832 1111 11123467999999999999999999999999998876421
Q ss_pred ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (347)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~ 282 (347)
..+.+|.-+|.||..+||++++++|+.|+.|+||-+.-|.|-++|.+|++.|.+
T Consensus 544 --------------------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 544 --------------------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred --------------------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 223479999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 283 i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+.|.|+. +++++|.|+.|+-||-. +...++.+.+|...|++++..|+|.+++++|.|.
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred EEEcccceeEEEecCcceEEeechh------hhhhheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence 9999987 88999999999999987 4447899999999999999999999999999985
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.9e-25 Score=184.70 Aligned_cols=226 Identities=17% Similarity=0.232 Sum_probs=183.2
Q ss_pred eeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
+...+.+|...|+.+-+.+. +++++++|++|++||.. +....+++|...|.+|.|+..|+++++|+.|=.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 45666778888988876554 78888899999999954 557889999999999999999999999999999999999
Q ss_pred CCCC---------CceeeeecccccccceEEeccCCCeE--EEEeecc-eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 191 SRKN---------PSVHKRVGSLPTFKDYVKSSVNPKNY--VEVRRNR-NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 191 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
.+.. ......+...|.. +++.++.....+ ++..... ...+.+|...|..++.+.||.++++++.|.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 7631 1112223334443 444444443333 2333333 2345679999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEecCCCcEEEEEeCCC----------C------EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707 259 LKVWRISDCKCLESINAHDDAINSVVAGFD----------S------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK 322 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~----------~------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 322 (347)
+++|-+.+++|...++.|+.+|.+++|.|. + ++++++.|++|++||+.++. ++.++.+
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~------cL~tL~g 332 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM------CLFTLVG 332 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe------EEEEEec
Confidence 999999999999999999999999999762 1 78899999999999998653 7889999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCC
Q 043707 323 QENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|..+|..++|+|.|++|+++.+|++
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCc
Confidence 9999999999999999999999985
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.5e-24 Score=195.31 Aligned_cols=195 Identities=22% Similarity=0.395 Sum_probs=164.6
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCC-CcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDS-KNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~d-g~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
+|+.+.--+..|..+.++ |++|+.|+.. |.+.||++..+ +...++|...+.+++++|||++|+||+.||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 566666566678888887 9999998764 79999996644 556788999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
...+-+.... ..|...|+.+.|+..++.|++.+.||+++.||+...++
T Consensus 379 ~~SgfC~vTF--------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 379 TQSGFCFVTF--------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccCceEEEEe--------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 9887432221 25999999999999999999999999999999999999
Q ss_pred EEEEecCC-CcEEEEEeCCCC-EEEEEeCCC-cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 270 LESINAHD-DAINSVVAGFDS-LVFTGSADG-TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 270 ~~~~~~h~-~~v~~i~~~~~~-~l~s~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++|.... -...|++..|.| ++.+|+.|. .|.||++++++ ++..+.+|+++|.+++|+|.+..|+++|.|.
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ------LLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe------eeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 99997543 356788888888 555566554 79999998664 7899999999999999999999999999997
Q ss_pred C
Q 043707 347 L 347 (347)
Q Consensus 347 ~ 347 (347)
|
T Consensus 501 T 501 (893)
T KOG0291|consen 501 T 501 (893)
T ss_pred e
Confidence 5
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=6e-24 Score=211.89 Aligned_cols=192 Identities=15% Similarity=0.251 Sum_probs=158.4
Q ss_pred cccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCc
Q 043707 123 EGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPS 196 (347)
Q Consensus 123 ~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~ 196 (347)
...|.++.|+ +.+|++++.||+|+|||.. +.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||++++...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 3456777764 5799999999999999965 45677889999999999997 7889999999999999999876432
Q ss_pred eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCE-EEEEEe
Q 043707 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN-AEQGLLYSGSWDKTLKVWRISDCK-CLESIN 274 (347)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~dg~i~vwdl~~~~-~~~~~~ 274 (347)
... .+...|.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.
T Consensus 612 ~~~---------------------------------~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 612 GTI---------------------------------KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred EEE---------------------------------ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 111 134578999995 468999999999999999998865 577888
Q ss_pred cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 275 ~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+|...|.++.|.+..+|++++.|++|++||++.........++..+.+|...+..++|+|++.+|++|+.||.
T Consensus 659 ~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 9999999999986669999999999999999743221122356677889999999999999999999999984
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.2e-23 Score=181.55 Aligned_cols=194 Identities=28% Similarity=0.473 Sum_probs=164.5
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
+.++.+|.+.|.++.++ +++|++++.||.|++|+.. +....+..|...+..+.|+|++++|++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45677899999999975 5799999999999999965 3456777898999999999999999999999999999998
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
.++..... ..|...|.++.|++++.++++++.|+.+++||+++++.+.
T Consensus 82 ~~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGECVRTL--------------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred cccceEEE--------------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 75322211 1377789999999998899988889999999999999999
Q ss_pred EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+..|...+.++.|+|++ ++++++.|+.|++||++... ....+..|...|.+++|+|+++.|++++.||.
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 999999999999999977 66666669999999997433 45555678889999999999999999988763
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.6e-24 Score=169.90 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=171.6
Q ss_pred cceeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
+.++++..+|..+|..++ ++...+++|+.|+.|.+||. .+..+.|.+|.+.|+.++|+.+...+++|+.|.++|+|
T Consensus 49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~w 128 (307)
T KOG0316|consen 49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLW 128 (307)
T ss_pred cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEE
Confidence 346899999999999877 46779999999999999995 46688999999999999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccc--------cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 189 KVSRKNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
|.++....+...+...... ..++..+.++..-...-+......--...+|+|++|+++++..+.++.|++++
T Consensus 129 DCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 129 DCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred EcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceee
Confidence 9998876544433322111 12233333333222222222222223567899999999999999999999999
Q ss_pred EEeCCCCEEEEEEecCCCcEEEEEeC--C-CCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCc-EEEEEEccCC
Q 043707 261 VWRISDCKCLESINAHDDAINSVVAG--F-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENA-ITALAVNQES 336 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h~~~v~~i~~~--~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~p~~ 336 (347)
+.|-.+|+.+..+++|...-..+.+. . +..+++|++||.|.+||+.... .+..+..+... |++++++|.-
T Consensus 209 LlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~------~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET------QISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred ecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce------eeeeeccCCceeEEeeecccCc
Confidence 99999999999999998765555433 2 3489999999999999997443 45566667766 8999999987
Q ss_pred CEEEEec
Q 043707 337 AVVYCGS 343 (347)
Q Consensus 337 ~~l~sgs 343 (347)
..++++.
T Consensus 283 ~~f~~A~ 289 (307)
T KOG0316|consen 283 DDFITAT 289 (307)
T ss_pred cceeEec
Confidence 5555554
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.8e-24 Score=200.93 Aligned_cols=191 Identities=20% Similarity=0.342 Sum_probs=165.8
Q ss_pred ccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707 124 GHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~ 199 (347)
..|-.++|. .-+++++-.+|.|++|| ....+..|..|.++|..++|+|.+..|++|+.|-+|+||+.++.++....
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 345555554 55999999999999999 55778899999999999999999999999999999999999887654332
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA 279 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~ 279 (347)
.+|.+.|+.+.|++.-.+++++|+|-+|+||+..+.+|+..+.+|...
T Consensus 90 --------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY 137 (1202)
T KOG0292|consen 90 --------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY 137 (1202)
T ss_pred --------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE
Confidence 269999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEcccCCcc-----------------------ceeeehhhhhccCCcEEEEEEccC
Q 043707 280 INSVVAGF-DSLVFTGSADGTVKVWRRELQGKG-----------------------TKHFLAQVLLKQENAITALAVNQE 335 (347)
Q Consensus 280 v~~i~~~~-~~~l~s~~~dg~I~vwd~~~~~~~-----------------------~~~~~~~~~~~h~~~V~~l~~~p~ 335 (347)
|.|..|+| +.++++++-|-+|+|||+....++ ......+.+.+|...|+-++|+|.
T Consensus 138 VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 138 VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 99999999 459999999999999999632220 122334567899999999999999
Q ss_pred CCEEEEecCCC
Q 043707 336 SAVVYCGSSDG 346 (347)
Q Consensus 336 ~~~l~sgs~DG 346 (347)
-.+|++|++|.
T Consensus 218 lpliVSG~DDR 228 (1202)
T KOG0292|consen 218 LPLIVSGADDR 228 (1202)
T ss_pred cceEEecCCcc
Confidence 99999999985
No 54
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=6.8e-24 Score=183.07 Aligned_cols=198 Identities=15% Similarity=0.246 Sum_probs=166.9
Q ss_pred ccceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
++..+.++++|...|+.+.+++ ..+++++.|..|+||... ........|.++|+.+..+|.|.||++++.||+...
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 4567889999999999998764 588999999999999843 456677889999999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
.|++++......... ...-.+++.+|||||.+|.+|..|+.++|||+..+
T Consensus 330 sd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred EEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 999988654332211 02234899999999999999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~D 345 (347)
..+..|.+|.++|..|.|+.+| +|++++.|+.|++||++... ..+++.-. ...|.++.|.+.|.+|+.+|.|
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999999999999999 89999999999999998443 23333222 2379999999999999999875
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3e-24 Score=199.43 Aligned_cols=198 Identities=22% Similarity=0.381 Sum_probs=172.4
Q ss_pred ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
-++..+..|+|+|..+.|. +.++++|++|-+|+||+ ..+++.++.+|-.-|..+.|++.-.+|++++.|.+||||+
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 3677888999999999875 55999999999999998 4567888999999999999999999999999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-- 267 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-- 267 (347)
..+++.+... .+|...|.|..|+|...+++++|-|-+|+|||+...
T Consensus 122 wqsr~~iavl--------------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 122 WQSRKCIAVL--------------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred ccCCceEEEE--------------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 9988754332 379999999999999999999999999999998421
Q ss_pred -------------------------E--EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707 268 -------------------------K--CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQV 319 (347)
Q Consensus 268 -------------------------~--~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~ 319 (347)
. ....+.+|+..|+-++|+|.- +|++|+.|+.|++|.... ++.+.+.+
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne----tKaWEvDt 245 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKAWEVDT 245 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc----ccceeehh
Confidence 0 123467899999999999975 999999999999999862 24566788
Q ss_pred hhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 320 LLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 320 ~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+|...|.++-|+|...+|++.|+|++
T Consensus 246 crgH~nnVssvlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred hhcccCCcceEEecCccceeEecCCCcc
Confidence 9999999999999999999999999984
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=193.84 Aligned_cols=195 Identities=16% Similarity=0.270 Sum_probs=160.6
Q ss_pred ccceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707 112 CNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI 187 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v 187 (347)
...++..+++|.+.|+.+.|+ .++|++++.|++||||+.. +++..| .|..-|+||+|+| |.++|++|+.||+|||
T Consensus 358 ~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 358 SEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred cccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEE
Confidence 566788999999999999998 5599999999999999965 445555 5899999999999 8899999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|++...+...... -.+-|++++|.|+|+..+.|+.+|.+++|+....
T Consensus 437 WsI~d~~Vv~W~D---------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 437 WSISDKKVVDWND---------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred eecCcCeeEeehh---------------------------------hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 9998775433222 3478999999999999999999999999999888
Q ss_pred EEEEEEecC--------CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC--cEEEEEEccC
Q 043707 268 KCLESINAH--------DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN--AITALAVNQE 335 (347)
Q Consensus 268 ~~~~~~~~h--------~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~p~ 335 (347)
+....+.-+ ...|+.+.|.|.. .|++.+.|..|+|+|.+... ++..+.++.. .=....|+.|
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~------lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD------LVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh------hhhhhcccccCCcceeeeEccC
Confidence 766554321 2279999998865 68888999999999996332 6677776532 3457789999
Q ss_pred CCEEEEecCCC
Q 043707 336 SAVVYCGSSDG 346 (347)
Q Consensus 336 ~~~l~sgs~DG 346 (347)
|++|+++++|.
T Consensus 558 gk~IVs~seDs 568 (712)
T KOG0283|consen 558 GKHIVSASEDS 568 (712)
T ss_pred CCEEEEeecCc
Confidence 99999999874
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=8.3e-23 Score=177.94 Aligned_cols=195 Identities=27% Similarity=0.475 Sum_probs=164.3
Q ss_pred eeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
.+..+..|...|.++.+.. +++++++.||.|++||.. +....+..|...|.+++|+|++.++++++.||.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 5666778888999998764 688888889999999965 446667788899999999999888888888999999999
Q ss_pred CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~ 270 (347)
+.++...... .|...|.++.|++++..+++++.|+.|++||++.++.+
T Consensus 165 ~~~~~~~~~~--------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 165 RTGKCVATLT--------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred cccccceeEe--------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 8654322211 37778999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+..|...+.++.|++++ ++++++.||.|++||+.... ....+..|...|.+++|+|++.+|++++.||.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce------eEEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence 9998899999999999987 66666669999999997432 44555688889999999999999999999974
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.4e-25 Score=184.29 Aligned_cols=195 Identities=19% Similarity=0.364 Sum_probs=165.2
Q ss_pred cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
+.++.++.+|...|.-+.++..++++++.|.+|.|||+.. ..+.+.+|..+|+.+.|+. ++|++++.|.+|++
T Consensus 267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 4578889999999999999999999999999999999653 3556889999999999964 49999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|++.+.+...... +|...|.|+.+. ++++++|+.|.+|++||+..|
T Consensus 345 W~~st~efvRtl~--------------------------------gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 345 WSTSTCEFVRTLN--------------------------------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred Eeccceeeehhhh--------------------------------cccccceehhcc--CeEEEecCCCceEEEEecccc
Confidence 9999886433221 588999998774 789999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc---ceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 268 KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG---TKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
.++..+++|+.-|.||.|. +..+++|+.||+|+|||+...... ....++..+..|.+.|..+.|. ...|++++.
T Consensus 391 ~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccC
Confidence 9999999999999999995 558999999999999999865431 1223466778899999999995 567777777
Q ss_pred CC
Q 043707 345 DG 346 (347)
Q Consensus 345 DG 346 (347)
|.
T Consensus 468 dd 469 (499)
T KOG0281|consen 468 DD 469 (499)
T ss_pred CC
Confidence 64
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=181.81 Aligned_cols=157 Identities=28% Similarity=0.503 Sum_probs=136.0
Q ss_pred eccccEEE--EeecCCEEEEecCCCcEEEEeCC--Cc--------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 121 RKEGHIYS--LAASGDLLYTGSDSKNIRVWKNL--KE--------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 121 ~h~~~V~~--l~~~~~~l~tg~~dg~I~vwd~~--~~--------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
+.+.++.| ++++|.+|++|+.||-|.+|+.. +. ...|.-+..+|.|+.|+.|...+++|+.||+|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34455655 45678999999999999999832 11 22345578899999999999999999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
.++++.+...... .|...|+|+.|+.|+..+++++.|.+++|.-++.|+
T Consensus 291 ri~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 291 RIETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred EEecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 9999976544332 399999999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
+++.|++|...|+...|.+|| .+++++.||+|+||+..+.
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 999999999999999999998 9999999999999998753
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=177.83 Aligned_cols=194 Identities=19% Similarity=0.365 Sum_probs=167.4
Q ss_pred cceeEeeeeccccEEEEeecCC--EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAASGD--LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~~~--~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
+.+..++.+|...|..++.+.. ||++++.|+.|+-||+. +.++.+.+|-..|.|++.+|.-..|++|+.|.++|||
T Consensus 183 g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 183 GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEe
Confidence 4577888899999999988754 99999999999999966 4578889999999999999988899999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
|++++..... +.+|...|..+.+.|....+++|+.|++|++||++.++
T Consensus 263 DiRtr~~V~~--------------------------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 263 DIRTRASVHV--------------------------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred eecccceEEE--------------------------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 9998864332 22699999999999988899999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
...++..|...|.+++.+|.. .||+++.| .|+-|++..+. ..+.+.+|..-|++++.+.| .++++|++.|
T Consensus 311 t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~------f~~nlsgh~~iintl~~nsD-~v~~~G~dng 381 (460)
T KOG0285|consen 311 TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE------FLQNLSGHNAIINTLSVNSD-GVLVSGGDNG 381 (460)
T ss_pred eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc------hhhccccccceeeeeeeccC-ceEEEcCCce
Confidence 999999999999999999997 55555555 68999997433 56668999999999999876 5677888766
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=195.76 Aligned_cols=190 Identities=28% Similarity=0.488 Sum_probs=166.6
Q ss_pred eeEe-eeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 115 LIGS-IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~-l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
.+.. +.+|.+.|.++.+. +++|++|+.|.++++||. ..+...+.+|.+.|.++...+. ++++|+.|.+|++|+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEe
Confidence 4555 89999999999987 889999999999999994 4678899999999999988665 889999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
+.++...... .+|.++|.++..+ +.++++|+.|++|+|||+.++++
T Consensus 318 v~n~~~l~l~--------------------------------~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 318 VTNGACLNLL--------------------------------RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ccCcceEEEe--------------------------------ccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 9977533222 1499999999998 78999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
++++.+|...|.++.+.....+++|+.|++|++||++... .+...+.+|..-|..+.+ .+++|++++.||+
T Consensus 364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 9999999999999988766799999999999999998552 378999999999977766 4789999999984
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=194.72 Aligned_cols=195 Identities=24% Similarity=0.382 Sum_probs=151.4
Q ss_pred eEeee-eccccEEEEee--cCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 043707 116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK---------------------------------------- 152 (347)
Q Consensus 116 i~~l~-~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~---------------------------------------- 152 (347)
...+. +|++.|+++.| +|+|||+|+.|+.|+||.+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44555 89999999987 599999999999999996322
Q ss_pred ----------------------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707 153 ----------------------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 153 ----------------------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
++..|.+|.+.|.+|.|+.++ +|++++.|.+||+|++...+++...
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------- 406 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------- 406 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------
Confidence 123367899999999999876 9999999999999999877644333
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~ 289 (347)
.|.+-|+|++|+| |.+++++|+-||.|+||++.+.+.+.-...+ .-|++++|.|||
T Consensus 407 ----------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdG 463 (712)
T KOG0283|consen 407 ----------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDG 463 (712)
T ss_pred ----------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCC
Confidence 4999999999999 7899999999999999999887776655544 679999999999
Q ss_pred -EEEEEeCCCcEEEEEcccCCccceee-ehhh-hhccCCcEEEEEEccCC-CEEEEecCC
Q 043707 290 -LVFTGSADGTVKVWRRELQGKGTKHF-LAQV-LLKQENAITALAVNQES-AVVYCGSSD 345 (347)
Q Consensus 290 -~l~s~~~dg~I~vwd~~~~~~~~~~~-~~~~-~~~h~~~V~~l~~~p~~-~~l~sgs~D 345 (347)
..++|+.+|.+++|+........... ..+. -......||.+.|.|.. ..|++.+.|
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD 523 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND 523 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCC
Confidence 88899999999999997443211111 0110 01112279999999855 345555555
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=2e-22 Score=200.95 Aligned_cols=201 Identities=20% Similarity=0.284 Sum_probs=159.5
Q ss_pred ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRI 187 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~v 187 (347)
..+..+.+|.+.|++++++ +.+|++|+.||+|++||... .+..+..+ ..|.++.|.+ ++.+|++|+.||.|++
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 4677788999999999985 56999999999999999653 34455543 6799999965 7899999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD- 266 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~- 266 (347)
||++..+..... ..+|...|.++.|. ++.+|++++.|++|++||++.
T Consensus 645 wD~~~~~~~~~~-------------------------------~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 645 YDLRNPKLPLCT-------------------------------MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EECCCCCccceE-------------------------------ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 999865421111 12488999999997 678999999999999999974
Q ss_pred -----CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee-------eehhhhhccCCcEEEEEEc
Q 043707 267 -----CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH-------FLAQVLLKQENAITALAVN 333 (347)
Q Consensus 267 -----~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~-------~~~~~~~~h~~~V~~l~~~ 333 (347)
.+++..+.+|...+.++.|++++ +|++|+.|+.|++|+.......... ........|...|.+++|+
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 36788999999999999999987 9999999999999997643210000 0011123456689999999
Q ss_pred cCCCEEEEecCCCC
Q 043707 334 QESAVVYCGSSDGL 347 (347)
Q Consensus 334 p~~~~l~sgs~DG~ 347 (347)
|++..|++|+.||.
T Consensus 773 ~~~~~lva~~~dG~ 786 (793)
T PLN00181 773 GQSSTLVAANSTGN 786 (793)
T ss_pred CCCCeEEEecCCCc
Confidence 99999999999984
No 64
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.1e-24 Score=171.35 Aligned_cols=193 Identities=20% Similarity=0.236 Sum_probs=158.3
Q ss_pred eccccEEEEe--ecCCEEEEecCCCcEEEEeCC-----CcceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEecC
Q 043707 121 RKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 121 ~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~-----~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~~ 191 (347)
.|++.|.... +.|++|+|++.|++|+|+... +.+..+.+|.++|+.++|.. .|..|++|+.||+|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 5777776644 679999999999999999843 44678999999999999954 89999999999999999988
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDC-- 267 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~-- 267 (347)
.++-..... ...|...|++++|.|. |-.|++++.||.|.|.+.+..
T Consensus 89 ~g~w~k~~e------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 89 NGRWTKAYE------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred CCchhhhhh------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 774221111 1148999999999996 668999999999999998754
Q ss_pred -EEEEEEecCCCcEEEEEeCCC---C------------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707 268 -KCLESINAHDDAINSVVAGFD---S------------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA 331 (347)
Q Consensus 268 -~~~~~~~~h~~~v~~i~~~~~---~------------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 331 (347)
...+...+|.-.|+++.|.|. | .|++|+.|+.|+||+.... ...+...|.+|...|.+++
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhhh
Confidence 233445789999999999885 2 5999999999999998743 3446677999999999999
Q ss_pred EccCC----CEEEEecCCCC
Q 043707 332 VNQES----AVVYCGSSDGL 347 (347)
Q Consensus 332 ~~p~~----~~l~sgs~DG~ 347 (347)
|.|.- .+||+||.||+
T Consensus 215 waP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred hccccCCCceeeEEecCCCc
Confidence 99964 68999999985
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-24 Score=195.27 Aligned_cols=198 Identities=23% Similarity=0.391 Sum_probs=165.9
Q ss_pred cceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 043707 113 NGLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIR 186 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~ 186 (347)
++++..+..|+..|.+++|+ ..+|++|+.||+|++||+. +....+.+....|.+++|+| .+.+|+++...|.++
T Consensus 123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq 202 (839)
T KOG0269|consen 123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ 202 (839)
T ss_pred chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence 44667888999999999986 6799999999999999965 45677888889999999999 778999999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
+||++.......+.. .|.++|.|+.|+|++.+||+|+.|+.|+|||+.+
T Consensus 203 lWDlRqp~r~~~k~~-------------------------------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 203 LWDLRQPDRCEKKLT-------------------------------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred EeeccCchhHHHHhh-------------------------------cccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 999997654333322 4999999999999999999999999999999976
Q ss_pred CEE--EEEEecCCCcEEEEEeCCCC--EEEEEe--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEE
Q 043707 267 CKC--LESINAHDDAINSVVAGFDS--LVFTGS--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVV 339 (347)
Q Consensus 267 ~~~--~~~~~~h~~~v~~i~~~~~~--~l~s~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l 339 (347)
.+. +.++. -..+|.+|.|-|+. .|++++ .|-.|+|||++- ...+..++..|...++.++|.. |...|
T Consensus 252 ~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 252 SRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred CCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc-----ccccceeeeccCccccceeccCCCceee
Confidence 543 34443 34689999999986 777776 588999999983 3457888999999999999976 45789
Q ss_pred EEecCCCC
Q 043707 340 YCGSSDGL 347 (347)
Q Consensus 340 ~sgs~DG~ 347 (347)
.+++.||+
T Consensus 326 ~s~sKD~t 333 (839)
T KOG0269|consen 326 WSCSKDGT 333 (839)
T ss_pred EeecCccH
Confidence 99999985
No 66
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1.3e-22 Score=189.03 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=129.1
Q ss_pred eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeec
Q 043707 156 GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH 234 (347)
Q Consensus 156 ~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 234 (347)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+......... ......+.+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH 124 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH 124 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence 4778999999999999 8889999999999999999765321000 0011123369
Q ss_pred CCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccc
Q 043707 235 YDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (347)
Q Consensus 235 ~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~ 312 (347)
...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+|++ +|++++.|++|+|||++.+.
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--- 201 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--- 201 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---
Confidence 9999999999975 799999999999999999999999999999999999999998 89999999999999998543
Q ss_pred eeeehhhhhccCCc-EEEEEEccCCCEEEEecC
Q 043707 313 KHFLAQVLLKQENA-ITALAVNQESAVVYCGSS 344 (347)
Q Consensus 313 ~~~~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~ 344 (347)
....+.+|... +..+.|.+++..|++++.
T Consensus 202 ---~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 202 ---IVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred ---EEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 34556677654 457889998888877653
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=189.22 Aligned_cols=206 Identities=21% Similarity=0.421 Sum_probs=173.1
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEE-eCCCCEEEEEeCCCcEEE
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIII-TGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~-sp~~~~l~s~~~Dg~I~v 187 (347)
.+.++..|.+.|..+.. +++.|++++.|-+|++|+... +..++..|...|.|+++ .++...+++|+.|+.|.+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 36678889999988774 577999999999999998543 46678899999999999 778889999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
||++++...........+. ..+..++...|.+++.++.+..+++|+..+.|++||.++.
T Consensus 145 WDin~~~~~l~~s~n~~t~---------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTV---------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred EEccCcchhhhhhcccccc---------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 9999874311111000000 0001158889999999999999999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+.+..+++|...|.++..++|| .+++++.||+|++||+..+ .++.++..|...|+++..+|+-.++++|+.||
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------RCLATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc------ceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence 9999999999999999999998 9999999999999999733 37788999999999999999999999999998
Q ss_pred C
Q 043707 347 L 347 (347)
Q Consensus 347 ~ 347 (347)
.
T Consensus 278 ~ 278 (735)
T KOG0308|consen 278 N 278 (735)
T ss_pred c
Confidence 3
No 68
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=3e-22 Score=187.78 Aligned_cols=177 Identities=15% Similarity=0.230 Sum_probs=138.6
Q ss_pred ecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEecc
Q 043707 139 GSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215 (347)
Q Consensus 139 g~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
|+.++.|++|+..+ .+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+........ .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-~------------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-K------------- 115 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc-c-------------
Confidence 67789999998654 45678899999999999996 7899999999999999998653211000 0
Q ss_pred CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE
Q 043707 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL-LYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT 293 (347)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s 293 (347)
.......+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+++| +|++
T Consensus 116 ----------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 116 ----------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ----------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 001122358999999999998765 5789999999999999998887776 56789999999998 8888
Q ss_pred EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE-----EEEccCCCEEEEecCCC
Q 043707 294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA-----LAVNQESAVVYCGSSDG 346 (347)
Q Consensus 294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~-----l~~~p~~~~l~sgs~DG 346 (347)
++.|+.|+|||++.+. .+..+.+|.+.+.. ..|++++.+|+++|.|+
T Consensus 185 ~s~D~~IrIwD~Rsg~------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQE------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred EecCCEEEEEECCCCc------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 8899999999998543 44567788765433 34568899999988774
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=7.5e-24 Score=170.97 Aligned_cols=201 Identities=19% Similarity=0.300 Sum_probs=158.2
Q ss_pred ceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 114 GLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
.-|+++.+|++.|+.-..+. .+-++++.|-+-+|||. ...+..| .|..-|.+++|+.|.++|++|+.+..+||+|
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 36899999999999877654 47888999999999994 3455555 4778899999999999999999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
++..+......- +|.+.|..+.|....+.+++++.|++|++||.++++.
T Consensus 129 ln~p~App~E~~-------------------------------ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 129 LNRPKAPPKEIS-------------------------------GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred ccCCCCCchhhc-------------------------------CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 987654333221 5999999999999889999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc-------------------------c----------ee
Q 043707 270 LESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG-------------------------T----------KH 314 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~-------------------------~----------~~ 314 (347)
++++.. ...|+++..+++|.+++-...+.|++||...-+.- . ..
T Consensus 178 v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 178 VQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred EEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC
Confidence 988873 44577777777776666666667777766532210 0 00
Q ss_pred eehhh-hhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 315 FLAQV-LLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 315 ~~~~~-~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+.. -.+|.++|.||.|+|+|..-++||.||+
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 01112 3688999999999999999999999996
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.4e-23 Score=179.15 Aligned_cols=202 Identities=18% Similarity=0.255 Sum_probs=165.3
Q ss_pred eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc------------ceeeecCCCCeeEEEEeC-CCCEEEEE
Q 043707 116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIITG-DSNKIFTG 179 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~------------~~~~~~h~~~V~~l~~sp-~~~~l~s~ 179 (347)
+.....|.+.|..+.. +..++++++..+.|+|||..+. -..+.+|...=++|.|++ ..-.|++|
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3334469999988874 5779999999999999994321 126788998888999999 44589999
Q ss_pred eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCc
Q 043707 180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKT 258 (347)
Q Consensus 180 ~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~ 258 (347)
+.|++|++||+......... ........+|.+.|..++|++. ..++++++.|+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred cCCCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 99999999999876432000 0122333469999999999994 678899999999
Q ss_pred EEEEeCC--CCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 259 LKVWRIS--DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 259 i~vwdl~--~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
+.|||+| +.++....++|.+.|+|++|+|-+ +||+|+.|++|++||+|...+ ++..+.+|...|..|.|+|
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCC
Confidence 9999999 667778889999999999999965 899999999999999997665 7889999999999999999
Q ss_pred CC-CEEEEecCCCC
Q 043707 335 ES-AVVYCGSSDGL 347 (347)
Q Consensus 335 ~~-~~l~sgs~DG~ 347 (347)
.. ..||+++.||.
T Consensus 327 h~etvLASSg~D~r 340 (422)
T KOG0264|consen 327 HNETVLASSGTDRR 340 (422)
T ss_pred CCCceeEecccCCc
Confidence 75 78999999974
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.4e-23 Score=184.38 Aligned_cols=210 Identities=20% Similarity=0.319 Sum_probs=174.4
Q ss_pred CCCCCCCCccccccc-------------ceeEeeee-ccccEEEEeecCCEEEEecCCCcEEEEeCCC--c-ceeeecCC
Q 043707 99 MPPYSPNENLLSSCN-------------GLIGSIVR-KEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--E-FSGFKSNS 161 (347)
Q Consensus 99 ~~~~~p~~~~~~~~~-------------~~i~~l~~-h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~-~~~~~~h~ 161 (347)
...|+++|..++... ..+..+.+ |.+.|-+++|++..+.+|+.|+.|..+|+.. . ...+.+|.
T Consensus 222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~ 301 (484)
T KOG0305|consen 222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR 301 (484)
T ss_pred EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence 336888888775431 24566677 9999999999999999999999999999542 2 33488999
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL 241 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 241 (347)
..|..++|++++.++++|+.|+.+.|||.....+.... ..|..+|..+
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------------------~~H~aAVKA~ 349 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--------------------------------TEHTAAVKAL 349 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--------------------------------eccceeeeEe
Confidence 99999999999999999999999999999554433222 2599999999
Q ss_pred EEcC-CCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEE-EeCCCcEEEEEcccCCccceee
Q 043707 242 SLNA-EQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT-GSADGTVKVWRRELQGKGTKHF 315 (347)
Q Consensus 242 ~~~~-~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s-~~~dg~I~vwd~~~~~~~~~~~ 315 (347)
+|+| ...+||+|+ .|+.|++||..+++.+..+.. ...|..|.|++.. ++.+ |-.++.|.||+.....
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~------ 422 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK------ 422 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc------
Confidence 9999 577899875 599999999999999988874 4679999999986 4444 4468899999997533
Q ss_pred ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+...+.+|...|..++++|||..|++|+.|.|
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 67889999999999999999999999999975
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.7e-23 Score=182.87 Aligned_cols=198 Identities=18% Similarity=0.250 Sum_probs=150.0
Q ss_pred eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----------------------------------------
Q 043707 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE---------------------------------------- 153 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~---------------------------------------- 153 (347)
-..+++|+..|.++.. +|-.|++|+.|-+|++||+...
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 4567788888888775 5789999999999999984110
Q ss_pred ---------------------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707 154 ---------------------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 154 ---------------------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
+..-++|...++|.+|+| +...|+||+.||++|+||++..+...........
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~------ 313 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA------ 313 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC------
Confidence 011247888899999999 5568999999999999999876532221111000
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE--E-EEEEecCCC--cEEEEEeC
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--C-LESINAHDD--AINSVVAG 286 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~-~~~~~~h~~--~v~~i~~~ 286 (347)
.+..-.++.++|++++.++++|+.||.|.+|+.+... + ...-++|.. .|+||.|+
T Consensus 314 --------------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 314 --------------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred --------------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 0244568899999999999999999999999986442 2 233357876 89999999
Q ss_pred CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecC
Q 043707 287 FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+|| +|++-+.|++++|||++...+ ++....+- ..+-+.++|+|+.++|++|.+
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kk-----pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKK-----PLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccchhhhccCCCceeeeecccccc-----chhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 998 999999999999999996654 44444332 335689999999999999875
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=177.30 Aligned_cols=226 Identities=16% Similarity=0.235 Sum_probs=171.4
Q ss_pred cceeEeeeeccccEEEEeecCC---EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAASGD---LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~~~---~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
...++.|.+|.+.|.|++-+.+ .+++|+.||.|+|||+. .+...+++|.+.|..|++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 4468889999999999997755 68999999999999965 56889999999999999987 58999999999999
Q ss_pred EecCCCCCceeeeecc-c---c--cccceEEeccCCCeEEEEeeccee-eeeecCCCeeEEEEcCC-CCEEEEEeCCCcE
Q 043707 188 WKVSRKNPSVHKRVGS-L---P--TFKDYVKSSVNPKNYVEVRRNRNV-LKIRHYDAVSCLSLNAE-QGLLYSGSWDKTL 259 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i 259 (347)
|.++.. +........ + . .....+..+.....+++..+.... .+.-..+.|.++.|+|- ..+|+++..|+.|
T Consensus 134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 998763 111111000 0 0 001112222222223333222222 22235677899999995 5678888899999
Q ss_pred EEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707 260 KVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338 (347)
Q Consensus 260 ~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 338 (347)
.+||++++.+++.+. -...-+.|+|+|+. .|++|.+|..++.||++.... ++....+|.++|.+|.|+|.|+-
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcc-----cchhhcccceeEEEeccCCCcch
Confidence 999999999988775 34456889999976 777899999999999997655 88899999999999999999999
Q ss_pred EEEecCCCC
Q 043707 339 VYCGSSDGL 347 (347)
Q Consensus 339 l~sgs~DG~ 347 (347)
+++||.|.+
T Consensus 287 fvsgsyDks 295 (433)
T KOG0268|consen 287 FVSGSYDKS 295 (433)
T ss_pred hccccccce
Confidence 999999964
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=177.63 Aligned_cols=209 Identities=22% Similarity=0.376 Sum_probs=166.8
Q ss_pred CCCCCCCCccccccc--ce-----------eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc--ceeeecC
Q 043707 99 MPPYSPNENLLSSCN--GL-----------IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE--FSGFKSN 160 (347)
Q Consensus 99 ~~~~~p~~~~~~~~~--~~-----------i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h 160 (347)
...|..+|.+++.+. |. +..+.+|+.+|..+.| ++..|++|++|+.+++||..+. ...+.+|
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 346778888886543 22 3446679998888775 4669999999999999996644 3367899
Q ss_pred CCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 161 SGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 161 ~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
+..|.|.+|+| ++..++||+.||+||+||.+.... . ...+.|..+|.
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~-------------------------------v~elnhg~pVe 200 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-R-------------------------------VVELNHGCPVE 200 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-e-------------------------------eEEecCCCcee
Confidence 99999999999 566899999999999999987741 1 11224999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA 317 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~ 317 (347)
.+.+-|.|.++++++ ...++|||+-+| +.+..+..|...|+|+.+..++ .|++|+-|+.|++||+..-+ ..
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K------vv 273 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK------VV 273 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE------EE
Confidence 999999999999988 568999999855 5555566699999999998876 99999999999999965221 22
Q ss_pred hhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 318 QVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 318 ~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+ .-.++|.+++.+|+++.++.|-.||+
T Consensus 274 ~s~-~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 274 HSW-KYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred Eee-ecccceeeEEecCCCceEEEecccce
Confidence 222 34679999999999999999999985
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=2.9e-23 Score=181.47 Aligned_cols=229 Identities=15% Similarity=0.203 Sum_probs=157.1
Q ss_pred cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCcceeeecCC-CCeeEEEEeCCC-CEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKEFSGFKSNS-GLVKAIIITGDS-NKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~~~~~~~h~-~~V~~l~~sp~~-~~l~s~~~Dg~I~vw 188 (347)
.++++++.+|..+|.++.|+ |..+++++-|+.|++||+++.......|. ..+.|+.|.|++ +.|++|+.|+.|+.|
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 56899999999999999885 78999999999999999887666555555 468899999977 889999999999999
Q ss_pred ecCCCCCcee--------eeecccccccceEEeccCCCeEEEEeecceeeee-e--cCCCeeEEEEcCCCCEEEEEeCCC
Q 043707 189 KVSRKNPSVH--------KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI-R--HYDAVSCLSLNAEQGLLYSGSWDK 257 (347)
Q Consensus 189 d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--h~~~V~~l~~~~~~~~l~s~s~dg 257 (347)
|+++++.... ..+..++....++.+..+....+.-.+....+.. . +.....||..+|++.+++.-+.|+
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 9999874322 1222223333333333333222211111111111 1 112234455555555555555555
Q ss_pred cEEEEeCCCC---EEEEEEecCC--CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707 258 TLKVWRISDC---KCLESINAHD--DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA 331 (347)
Q Consensus 258 ~i~vwdl~~~---~~~~~~~~h~--~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 331 (347)
.|.++.+... ...+.|++|. +.-..+.|+||| +|++|..||.+.+||.++.. ++..+.+|..++..+.
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k------l~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK------LVSKLKAHDQPCIGVD 481 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh------hhhccccCCcceEEEE
Confidence 5555544221 1223455664 345667899998 99999999999999998543 6888999999999999
Q ss_pred EccCC-CEEEEecCCCC
Q 043707 332 VNQES-AVVYCGSSDGL 347 (347)
Q Consensus 332 ~~p~~-~~l~sgs~DG~ 347 (347)
|+|.. ..||+|+.||.
T Consensus 482 wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGL 498 (503)
T ss_pred ecCCCcceeEecccCce
Confidence 99966 88999999983
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=163.83 Aligned_cols=201 Identities=16% Similarity=0.283 Sum_probs=160.9
Q ss_pred ceeEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCC--CCEEEEEeCCC
Q 043707 114 GLIGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGD--SNKIFTGHQDG 183 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg 183 (347)
.++.+|.+|.|+|+.+.|- |.+||+++.||+|.||.... ....+..|...|++++|.|. |-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 5688999999999999973 78999999999999998543 35567789999999999994 56799999999
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---C-----------CE
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---Q-----------GL 249 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~-----------~~ 249 (347)
.|.|.+.+....-.... +...|.-.|++++|.|. | +.
T Consensus 127 ~vsvl~~~~~g~w~t~k-----------------------------i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSK-----------------------------IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred cEEEEEEcCCCCccchh-----------------------------hhhccccccceeeecCcCCCccccccCcccccce
Confidence 99999988762111111 11248899999999985 4 56
Q ss_pred EEEEeCCCcEEEEeCCCCE--EEEEEecCCCcEEEEEeCCCC-----EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707 250 LYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFDS-----LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK 322 (347)
Q Consensus 250 l~s~s~dg~i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~-----~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 322 (347)
|++|+.|..|+||+...++ .-.+|.+|.+.|..++|.|.- .||+++.||+|.||..+.+... .....+..
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---wk~tll~~ 254 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---WKKTLLEE 254 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---cccccccc
Confidence 9999999999999998753 345589999999999999862 8999999999999988733221 22233344
Q ss_pred cCCcEEEEEEccCCCEEEEecCCC
Q 043707 323 QENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
....+..+.|+..|..|+.++.|.
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCc
Confidence 567899999999999999988774
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.1e-22 Score=191.42 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=159.2
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC--------------------CcceeeecCCCCeeEEEEe
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL--------------------KEFSGFKSNSGLVKAIIIT 170 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~--------------------~~~~~~~~h~~~V~~l~~s 170 (347)
.+++.+...|.+.|.|+.| +|++||+|++|+.|.||+.. +.+..+.+|...|.+++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 4567888899999999986 58899999999999999733 1345678999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL 250 (347)
Q Consensus 171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 250 (347)
|++.+|++++.|++|.||+..+.+..... .+|...|..+.|.|-|++|
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl--------------------------------~~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVL--------------------------------RGHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeee--------------------------------ecccccccceEECCccCee
Confidence 99999999999999999999887432222 2599999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCE----------------------------------------------------EEEEEecCCC
Q 043707 251 YSGSWDKTLKVWRISDCK----------------------------------------------------CLESINAHDD 278 (347)
Q Consensus 251 ~s~s~dg~i~vwdl~~~~----------------------------------------------------~~~~~~~h~~ 278 (347)
++-+.|++|+||++.+.. .-..|-+|.+
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 999999999999864321 2223457999
Q ss_pred cEEEEEeCCC------C------------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707 279 AINSVVAGFD------S------------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 279 ~v~~i~~~~~------~------------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~ 340 (347)
++.++.|+|. . .+|+|+.|++|.||...... . +.....-....|.+++|+|||..|+
T Consensus 267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R---P--l~vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR---P--LFVIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC---c--hhhhhhhhcCceeeeeEcCCCCeEE
Confidence 9999999871 1 46789999999999985322 1 2222222366899999999999999
Q ss_pred EecCCCC
Q 043707 341 CGSSDGL 347 (347)
Q Consensus 341 sgs~DG~ 347 (347)
+||.||+
T Consensus 342 acS~DGt 348 (942)
T KOG0973|consen 342 ACSLDGT 348 (942)
T ss_pred EEecCCe
Confidence 9999995
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=6.9e-23 Score=170.14 Aligned_cols=202 Identities=19% Similarity=0.318 Sum_probs=162.6
Q ss_pred eeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 115 LIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
+|+++-.|..+|.++.|.+ .+|++|+.|++|+++|..+. .+.|+ ...+|.+|.|+|.|.+|+.|....++|+
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeE
Confidence 7888999999999999864 59999999999999997644 23333 3468999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
||+++-+.-.... |. -+|.+.|+++.+++.+++.++++.||.|++||--.+
T Consensus 243 Ydv~T~Qcfvsan----Pd-------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 243 YDVNTYQCFVSAN----PD-------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred EeccceeEeeecC----cc-------------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence 9999875322111 11 149999999999999999999999999999999999
Q ss_pred EEEEEEe-cCCC-cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc-----------------------cce--------
Q 043707 268 KCLESIN-AHDD-AINSVVAGFDS-LVFTGSADGTVKVWRRELQGK-----------------------GTK-------- 313 (347)
Q Consensus 268 ~~~~~~~-~h~~-~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~-----------------------~~~-------- 313 (347)
+|+.++. +|.+ .|.+..|..++ ++++.+.|..|++|.+.++.- .+.
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa 373 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA 373 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence 9999884 6754 58888999888 999999999999999875321 000
Q ss_pred ------------eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 314 ------------HFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 314 ------------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
........+|.+.+..+.-+|.+..+++||.|-
T Consensus 374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 001112347899999999999999999999873
No 79
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.9e-24 Score=194.26 Aligned_cols=192 Identities=24% Similarity=0.351 Sum_probs=166.7
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
+..+.+|+..|-++.++ ..+|++|+.+|+|++||+. +.++++.+|...+..+.|+|-+.++++|+.|+.+++||.+
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 44588999999999976 5699999999999999976 4578899999999999999999999999999999999998
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
...+..... +|...|.++.|+|+|.++++|+.|.+++|||+..|+.+.
T Consensus 143 k~Gc~~~~~--------------------------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 143 KKGCSHTYK--------------------------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred ccCceeeec--------------------------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccc
Confidence 654332221 488889999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 272 SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.|+.|.+.+..+.|+|.. ++++|+.|++|++||+++- ..+.........|.+++|+|++..+++|..+
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999999999987 8889999999999999832 2344444446789999999999999988654
No 80
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.4e-22 Score=167.27 Aligned_cols=196 Identities=16% Similarity=0.252 Sum_probs=156.6
Q ss_pred eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----------------ceeeecCCCCeeEEEEeC-CCCEE
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----------------FSGFKSNSGLVKAIIITG-DSNKI 176 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----------------~~~~~~h~~~V~~l~~sp-~~~~l 176 (347)
....|.|.|.++..+ |+++++|+.||.|.|||+.+. ...-.+|.-.|..+.|-| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 345688999988864 889999999999999995421 111245788999999999 76799
Q ss_pred EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---CCEEEEE
Q 043707 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---QGLLYSG 253 (347)
Q Consensus 177 ~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~ 253 (347)
.+++.|.+++|||..+-+..... ...+.|..-+++|- .-++++|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F---------------------------------~me~~VYshamSp~a~sHcLiA~g 164 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDF---------------------------------KMEGKVYSHAMSPMAMSHCLIAAG 164 (397)
T ss_pred ecccccceEEEeecccceeeEEe---------------------------------ecCceeehhhcChhhhcceEEEEe
Confidence 99999999999999887643322 24566777777773 4578888
Q ss_pred eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc--------c-ceeeehhhhhc
Q 043707 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK--------G-TKHFLAQVLLK 322 (347)
Q Consensus 254 s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~--------~-~~~~~~~~~~~ 322 (347)
..|-.|++.|+..|.+-+++.+|.+.|.++.|+|.. .|++|+.||.|++||++.... . ......+.-.+
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 899999999999999999999999999999999986 889999999999999984311 1 11122334567
Q ss_pred cCCcEEEEEEccCCCEEEEecCCC
Q 043707 323 QENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
|.+.|..++|..++.++++++.|.
T Consensus 245 h~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ccceeeeeeecccchhhhhccCcc
Confidence 899999999999999999998874
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.8e-22 Score=191.92 Aligned_cols=200 Identities=20% Similarity=0.292 Sum_probs=154.1
Q ss_pred ccEEEEe--ecCCEEEEec--CCCcEEEEeC--------------CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 124 GHIYSLA--ASGDLLYTGS--DSKNIRVWKN--------------LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 124 ~~V~~l~--~~~~~l~tg~--~dg~I~vwd~--------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
..|++++ +++..++||+ .||.++||+. .+.+.....|.+.|.|+.|+|||++||+|+.|+.|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 3566666 6788999999 9999999962 23355677899999999999999999999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
.||+...... .... ....+...++-+ .....+.+|...|..++|+|++.+|++++.|++|.||+.+
T Consensus 94 ~iW~~~~~~~--~~~f-----------gs~g~~~~vE~w-k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 94 MIWERAEIGS--GTVF-----------GSTGGAKNVESW-KVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEeeecccCC--cccc-----------ccccccccccee-eEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 9999874100 0000 000001111111 1223445799999999999999999999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhc------cCCcEEEEEEccCCCE
Q 043707 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK------QENAITALAVNQESAV 338 (347)
Q Consensus 266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~ 338 (347)
+++.+..+++|.+.|..+.|.|-| +||+-+.|++|+||++..-+ ..+.+.+ -..-+..+.|+|||.+
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~------i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG------IEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce------eeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999999999988 99999999999999976422 2222222 2346889999999999
Q ss_pred EEEec
Q 043707 339 VYCGS 343 (347)
Q Consensus 339 l~sgs 343 (347)
|++.-
T Consensus 234 las~n 238 (942)
T KOG0973|consen 234 LASPN 238 (942)
T ss_pred ecchh
Confidence 99863
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3e-23 Score=173.25 Aligned_cols=216 Identities=20% Similarity=0.310 Sum_probs=171.8
Q ss_pred CCCCCCCCCCCCCccccccc--ce-------------------eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC
Q 043707 94 KSPWLMPPYSPNENLLSSCN--GL-------------------IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN 150 (347)
Q Consensus 94 ~~~~~~~~~~p~~~~~~~~~--~~-------------------i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~ 150 (347)
++..-...|+|+|+++.+.. |. ...+..|+..|.|+.++ .+.|++|+.||.|+||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 33444557999998875432 21 22355688899999986 459999999999999984
Q ss_pred --CCcceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecc
Q 043707 151 --LKEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR 227 (347)
Q Consensus 151 --~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (347)
..+++.|. .|+..|+|+.|+.|+..+++++.|.++|+--+++++.....+
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------------------------- 345 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------------------------- 345 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---------------------------
Confidence 56677776 899999999999999999999999999999999987654443
Q ss_pred eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC--CC---------------------------
Q 043707 228 NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--DD--------------------------- 278 (347)
Q Consensus 228 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--~~--------------------------- 278 (347)
+|...|+...|.++|+.+++++.||+|+||+.++.+|+.+|+.. +-
T Consensus 346 -----GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 346 -----GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred -----CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 69999999999999999999999999999999988777665421 11
Q ss_pred ------------------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 279 ------------------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 279 ------------------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
...+...+|.| ++++.++|+.++.|....++ +..++..|+..|..++-+|..+.|
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~------LE~tl~VhEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK------LERTLPVHEKDVIGLTHHPHQNLL 494 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc------eeeeeecccccccccccCcccchh
Confidence 22233456665 67777788888777776443 567788899999999999999999
Q ss_pred EEecCCCC
Q 043707 340 YCGSSDGL 347 (347)
Q Consensus 340 ~sgs~DG~ 347 (347)
++-++||+
T Consensus 495 AsYsEDgl 502 (508)
T KOG0275|consen 495 ASYSEDGL 502 (508)
T ss_pred hhhcccch
Confidence 99999985
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=155.19 Aligned_cols=201 Identities=17% Similarity=0.214 Sum_probs=143.7
Q ss_pred eeeccccEEEEeec------CCEEEEe-cCCCcEEEEe--CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 119 IVRKEGHIYSLAAS------GDLLYTG-SDSKNIRVWK--NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 119 l~~h~~~V~~l~~~------~~~l~tg-~~dg~I~vwd--~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
+..|.+.|..+++- +.+|+++ ..|.+|++-| ..+.++.+.+|++.|.++- +=++-+|++|++|.+||+||
T Consensus 132 ~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 132 FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEe
Confidence 33455555555541 2244443 2344444444 2344566677887777662 22455899999999999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
++-.............. --....|..++..|.|++|++|-.|....+||++.++.
T Consensus 211 lrv~~~v~~l~~~~~~~-------------------------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDG-------------------------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred eeccceeeeccCcccCC-------------------------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 97654322111100000 00235799999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 270 LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
++.|..|...|.|+.|+|.. ++++++.|..|++-|++ +.-....+......|...+..+.|+|+.--+++.+.|.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq--gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ--GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc--cchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 99999999999999999986 99999999999999997 322233344455678889999999999988899988864
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=2.7e-22 Score=166.62 Aligned_cols=196 Identities=16% Similarity=0.310 Sum_probs=159.5
Q ss_pred eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC--------------------cceeeecCCCCeeEEEEeCCC
Q 043707 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK--------------------EFSGFKSNSGLVKAIIITGDS 173 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~--------------------~~~~~~~h~~~V~~l~~sp~~ 173 (347)
-..+..|++++.+-.+ +|.+++||+.|..|+|.|..+ .++++..|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3456679988777654 688999999999999998531 145677899999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE
Q 043707 174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG 253 (347)
Q Consensus 174 ~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 253 (347)
..|++|+.|++|+++|+..........+ +....+|.+++|+|.|.+|+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEe
Confidence 9999999999999999976532211111 1255789999999999999999
Q ss_pred eCCCcEEEEeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhh-hcc-CCcE
Q 043707 254 SWDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVL-LKQ-ENAI 327 (347)
Q Consensus 254 s~dg~i~vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~h-~~~V 327 (347)
..-.++++||+.+.+|...- ..|.+.|+++.+++.+ +.++++.||.|++||--.. + ++.++ .+| ...|
T Consensus 235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-r-----Cv~t~~~AH~gsev 308 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-R-----CVRTIGNAHGGSEV 308 (430)
T ss_pred cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH-H-----HHHHHHhhcCCcee
Confidence 99999999999999987654 3688999999999988 8889999999999997432 2 45444 456 4479
Q ss_pred EEEEEccCCCEEEEecCCCC
Q 043707 328 TALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 328 ~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+..|..++++|++.|.|.+
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred eeEEEccCCeEEeecCCcce
Confidence 99999999999999999863
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.6e-22 Score=183.64 Aligned_cols=189 Identities=22% Similarity=0.341 Sum_probs=161.7
Q ss_pred cceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 113 NGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
..++.+|++|+..|+|++.. ...+++|+.|.++++|...+....+++|+..|++++.-|++ .++||+.|.+|++|.-.
T Consensus 91 ~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 91 AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG 169 (745)
T ss_pred CCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence 34788999999999999964 33589999999999999998888899999999999999987 89999999999999874
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
+.. . .+.+|.+.|+.+++-+++ .+++++.||.|+.|++ +++++.
T Consensus 170 ~~l--~--------------------------------tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 170 TLL--K--------------------------------TFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred chh--h--------------------------------hhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee
Confidence 321 1 112599999999998864 5789999999999999 899999
Q ss_pred EEecCCCcEEEEE-eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 272 SINAHDDAINSVV-AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 272 ~~~~h~~~v~~i~-~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+.+|...|.++. ..+++.++++++|+++++|+.. .+.+.+.-....|+++++-++|. |++|++||.
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~ 281 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGR 281 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--------ceEEEEecCccceEEEEEeeCCC-EEEeccCce
Confidence 9999999999998 6667899999999999999986 25666666677899999999887 567777874
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=7.6e-22 Score=163.37 Aligned_cols=186 Identities=23% Similarity=0.321 Sum_probs=135.7
Q ss_pred cEEEEeec---CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707 125 HIYSLAAS---GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV 197 (347)
Q Consensus 125 ~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~ 197 (347)
.|.+|+|+ ..++++|+.||+||+|++... -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++...
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 44456655 347789999999999996542 24456789999999999999999999999999999999986432
Q ss_pred eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG--LLYSGSWDKTLKVWRISDCKCLESINA 275 (347)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~vwdl~~~~~~~~~~~ 275 (347)
.. .|..+|.++.|-+... +|++|++|++|+.||+|...++.++.-
T Consensus 109 v~---------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 109 VA---------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred ee---------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 22 3999999999988655 899999999999999998776655542
Q ss_pred CC-----------------------------------------CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707 276 HD-----------------------------------------DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 276 h~-----------------------------------------~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~ 313 (347)
.+ -.+.||++..|. ..+.|+-+|.+.|..+..... .
T Consensus 156 PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~- 233 (347)
T KOG0647|consen 156 PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-K- 233 (347)
T ss_pred cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-c-
Confidence 11 124455554443 446666666666666653211 0
Q ss_pred eeehhhhhccC---------CcEEEEEEccCCCEEEEecCCCC
Q 043707 314 HFLAQVLLKQE---------NAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 314 ~~~~~~~~~h~---------~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.-..+..|. .+|++|+|+|....|+++|.||+
T Consensus 234 --~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 234 --DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred --CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 011222232 36889999999999999999996
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.1e-22 Score=163.82 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=158.0
Q ss_pred eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCC--EEEEEeCCCcEEEEecC
Q 043707 116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSN--KIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~I~vwd~~ 191 (347)
+..+..|.+.|++++.++.++++|+.|-+|+|||..+ .+..+..|.+.|+++.|.+.-. .|++|+.||.|.+|++.
T Consensus 36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 5566789999999999999999999999999999764 4667888999999999998654 89999999999999997
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
.-...... ..|...|+.++.+|.+++-++.+.|+.++.|++-+|+.-.
T Consensus 116 ~W~~~~sl--------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 116 SWELLKSL--------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred CeEEeeee--------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 65322111 1488899999999999999999999999999997664211
Q ss_pred EEe-----------c----------------------------CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707 272 SIN-----------A----------------------------HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (347)
Q Consensus 272 ~~~-----------~----------------------------h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~ 312 (347)
.++ . ....+.++.|...+.|++|+.|+.|++||...
T Consensus 164 v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds----- 238 (362)
T KOG0294|consen 164 VLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS----- 238 (362)
T ss_pred eeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-----
Confidence 110 0 11235666776667999999999999999974
Q ss_pred eeeehhhhhccCCcEEEEEE--ccCCCEEEEecCCCC
Q 043707 313 KHFLAQVLLKQENAITALAV--NQESAVVYCGSSDGL 347 (347)
Q Consensus 313 ~~~~~~~~~~h~~~V~~l~~--~p~~~~l~sgs~DG~ 347 (347)
..+...+.+|...|.++.+ .|++.+|+++|+||.
T Consensus 239 -~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 239 -DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred -CccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 2378888999999999985 467799999999994
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=1.4e-21 Score=179.02 Aligned_cols=205 Identities=20% Similarity=0.356 Sum_probs=166.3
Q ss_pred eeEeeeeccccEEEE--eecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSL--AASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l--~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
.++++... .+.|. .+.++++++|...|.+.+||.. ..+...+.|.++|+.++.+||+..+++|+.|.+|++||.
T Consensus 406 ciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf 483 (888)
T KOG0306|consen 406 CIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDF 483 (888)
T ss_pred eeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeE
Confidence 44444332 34443 3567799999999999999954 557778899999999999999999999999999999998
Q ss_pred CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE
Q 043707 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~ 270 (347)
.-... .|.... .++.+ .....+.-.+.|.|++++||+++|+++--|.+++||-+.+.+..
T Consensus 484 ~l~~~--------~~gt~~---------k~lsl---~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf 543 (888)
T KOG0306|consen 484 KLVVS--------VPGTQK---------KVLSL---KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF 543 (888)
T ss_pred EEEec--------cCcccc---------eeeee---ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence 53221 000000 00000 11112235688999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 271 ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 271 ~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.++-+|.-+|.|+..+||+ +++||+.|..|++|-++.+. +...+.+|+..|.++.|.|+...+.+||.||.
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEeccccch------hhhhhhcccCceeEEEEcccceeEEEecCcce
Confidence 9999999999999999998 99999999999999998654 68889999999999999999999999999973
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=4.2e-22 Score=171.08 Aligned_cols=226 Identities=23% Similarity=0.321 Sum_probs=173.8
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
++.+|.+-.+.|++++++ ++.+++++.|+.+++|+.. +...++.+|++.|+++.|.-....+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 577777778889998875 7799999999999999865 567889999999999999887667999999999999999
Q ss_pred CCCCCceeeeecccc-----cccceEEeccCCC-eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 191 SRKNPSVHKRVGSLP-----TFKDYVKSSVNPK-NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
....+.....+.... ....++....+.+ .+++.+.......+.-.+.|+++..++++..|++++.|.++.+.|+
T Consensus 291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence 886543332222111 0122233333333 3344455555566666679999999999999999999999999999
Q ss_pred CCCEEEEEEecC----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC--CcEEEEEEccCCC
Q 043707 265 SDCKCLESINAH----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE--NAITALAVNQESA 337 (347)
Q Consensus 265 ~~~~~~~~~~~h----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~p~~~ 337 (347)
++.+....+.+. ....+.+.|+|++ |+++|+.||.|+||++.+++ +...+.... ..|++++|+|.|.
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK------lE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK------LEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce------EEEEeccCCCCcceEEEEEcCCCc
Confidence 999888777542 2237889999998 99999999999999998554 333333332 2699999999999
Q ss_pred EEEEecCCC
Q 043707 338 VVYCGSSDG 346 (347)
Q Consensus 338 ~l~sgs~DG 346 (347)
.|++++.++
T Consensus 445 ~Llsadk~~ 453 (459)
T KOG0288|consen 445 GLLSADKQK 453 (459)
T ss_pred hhhcccCCc
Confidence 999998875
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-20 Score=156.91 Aligned_cols=207 Identities=17% Similarity=0.207 Sum_probs=148.8
Q ss_pred cCCEEEEecC--CCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc--
Q 043707 132 SGDLLYTGSD--SKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP-- 205 (347)
Q Consensus 132 ~~~~l~tg~~--dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~-- 205 (347)
....++.++. |.+||..++ .+.++-|.+|...|..|+.+|-+..+++++.|++||+||++..+..........|
T Consensus 67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~ 146 (311)
T KOG1446|consen 67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA 146 (311)
T ss_pred CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcce
Confidence 3444444443 556666663 3457778999999999999998889999999999999999977765444433322
Q ss_pred ---cccceEEeccCCC--eEEEEeecce----eeee--ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 206 ---TFKDYVKSSVNPK--NYVEVRRNRN----VLKI--RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 206 ---~~~~~~~~~~~~~--~~~~~~~~~~----~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
....+++...... .+++++.-.. ...+ .-....+.|.|+|+|++|+.+...+.+++.|.-+|..+.++.
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 1112222222222 2223322211 1111 235678899999999999999999999999999999999998
Q ss_pred cCCCcE---EEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhc-cCCcEEEEEEccCCCEEEEecC
Q 043707 275 AHDDAI---NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK-QENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 275 ~h~~~v---~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
.+...- -...|.||+ ++++|+.||+|.+|+++++.+ +..+.+ +..++.++.|+|...+++++++
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~------v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK------VAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE------eeEecCCCCCCccccccCCceeeeeecCc
Confidence 775432 456789998 888888999999999986653 444444 6889999999999888888875
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=166.67 Aligned_cols=184 Identities=22% Similarity=0.299 Sum_probs=159.6
Q ss_pred cEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 125 HIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 125 ~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
.|+++...+ ..++||+.|..+.++|. .+.+..+++|...|..+.++|+...+++++.|..|+||.+........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence 477777654 79999999999999994 466889999999999999999999999999999999999876542211
Q ss_pred ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCC
Q 043707 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDD 278 (347)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~ 278 (347)
...|..+|+.+..+|.|.||++++.|+++.+.|++++.++..... .+-
T Consensus 299 ------------------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v 348 (506)
T KOG0289|consen 299 ------------------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV 348 (506)
T ss_pred ------------------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc
Confidence 124999999999999999999999999999999999998877653 234
Q ss_pred cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+++.+|+||| +|.+|..|+.|+|||+..+. ....+.+|.++|+.|+|+.+|-+|++++.||
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~------~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT------NVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCcc------ccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 58999999999 77789999999999998543 4777889999999999999999999999997
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.2e-22 Score=165.49 Aligned_cols=228 Identities=19% Similarity=0.265 Sum_probs=173.9
Q ss_pred ccceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 112 CNGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
...+++.+.+|++.|+.++.+ ..++.+++.|.+.+||.+ ..++..+.+|.+.|++|+|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345788889999999999865 348999999999999974 5778999999999999999999999999999999999
Q ss_pred EecCCCCCcee----------eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC
Q 043707 188 WKVSRKNPSVH----------KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257 (347)
Q Consensus 188 wd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 257 (347)
|...-.-..+. .................... -..-+-....+.+|...|.+..|-..+..++++++|.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD--~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD--GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC--CceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 98322111110 00000000000000000000 0001112233457999999999999999999999999
Q ss_pred cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 258 TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 258 ~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
+..+||+++++.+..+.+|+...+.+.-+|.. ++++++.|.+.++||.+. ....+..+.+|...|+++.|.-+
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-----aI~sV~VFQGHtdtVTS~vF~~d- 368 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-----AIQSVAVFQGHTDTVTSVVFNTD- 368 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-----hcceeeeecccccceeEEEEecC-
Confidence 99999999999999999999999999999886 888999999999999983 22367788999999999999876
Q ss_pred CEEEEecCCCC
Q 043707 337 AVVYCGSSDGL 347 (347)
Q Consensus 337 ~~l~sgs~DG~ 347 (347)
..+++|+.|.+
T Consensus 369 d~vVSgSDDrT 379 (481)
T KOG0300|consen 369 DRVVSGSDDRT 379 (481)
T ss_pred CceeecCCCce
Confidence 55788998864
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=179.78 Aligned_cols=184 Identities=27% Similarity=0.468 Sum_probs=160.5
Q ss_pred ccccEEEEeecCCEEEEecCCCcEEEEeCCCc--cee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH 198 (347)
Q Consensus 122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~ 198 (347)
|...+.+..+..+++++++.|.+|++||.... +.. +.+|.+.|+++++...+.++++|+.|.+++|||..++.....
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 45578888899999999999999999995533 444 889999999999987677999999999999999998875433
Q ss_pred eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC
Q 043707 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDD 278 (347)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~ 278 (347)
.. +|...|.|+...+ .++++|+.|.+|++|++.++.++..+.+|.+
T Consensus 287 l~--------------------------------gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 287 LQ--------------------------------GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ec--------------------------------CCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 22 5999999987754 6788899999999999999999999999999
Q ss_pred cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 279 ~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+|.++..+ ..++++|+.|++|+|||+... .++..+.+|...|+++.+.+. ..+++|+.|++
T Consensus 333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred cEEEEEec-CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 99999998 679999999999999999843 378999999999999988766 89999999974
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=159.76 Aligned_cols=197 Identities=18% Similarity=0.303 Sum_probs=151.6
Q ss_pred cceeEeeeeccccEEEEeecCC----EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707 113 NGLIGSIVRKEGHIYSLAASGD----LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR 186 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~~~----~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~ 186 (347)
...++.+..|.+.|+++.+.+. .|++|++||.|.+|+.. ..+..+++|.+.|+.|+++|.++.-++.+.|+.++
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 4467888899999999998643 69999999999999955 66889999999999999999999999999999999
Q ss_pred EEecCCCCCceeeeecccc-------cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707 187 IWKVSRKNPSVHKRVGSLP-------TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 259 (347)
+||+-.++......+...+ ....|+....+...++.+........+.....+.|+.|- ++..|++|..|+.|
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWI 231 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceE
Confidence 9999988765554444333 222333333333333333222222222334457777776 46788999999999
Q ss_pred EEEeCCCCEEEEEEecCCCcEEEEEe--CCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707 260 KVWRISDCKCLESINAHDDAINSVVA--GFDS-LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 260 ~vwdl~~~~~~~~~~~h~~~v~~i~~--~~~~-~l~s~~~dg~I~vwd~~~~~~ 310 (347)
.+||..+..++..+.+|...|..+.+ .|++ +|++++.||.|+|||++...+
T Consensus 232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 99999999999999999999999985 3444 999999999999999986644
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=157.59 Aligned_cols=224 Identities=17% Similarity=0.150 Sum_probs=159.1
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----c----------------------------------c
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----E----------------------------------F 154 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~----------------------------------~ 154 (347)
.+..|++|.+.|++++| +|++|+|++.|+.|+||++.. . +
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 36788999999999987 588999999999999997310 0 0
Q ss_pred ee-----------------------eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee--------cc
Q 043707 155 SG-----------------------FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV--------GS 203 (347)
Q Consensus 155 ~~-----------------------~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~--------~~ 203 (347)
.. -+.|.-.|..+-...++.+|++++.|.+|.+|+++ ++....... ..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 00 01234455566666778899999999999999998 443322221 12
Q ss_pred cccccceEEeccCCCeEE-EEee---------cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------
Q 043707 204 LPTFKDYVKSSVNPKNYV-EVRR---------NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD------- 266 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~------- 266 (347)
.|...-+..+.+.+...+ +.-- .+...+.+|...|..++|+++...+++.+.||+++|||..-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 233344444445444332 2211 11223458999999999999999999999999999999742
Q ss_pred CEEEEEE----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 267 CKCLESI----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 267 ~~~~~~~----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
.+.++.. .+-.+.-..++.+|.+.+++.+....|+++..+.+.. ....-..|...|.+|+|+++|+++++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~-----~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD-----YPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc-----chhHHHhhcCceeeEEecCCCcEEeee
Confidence 2233333 1223334488999999888888889999999987554 444556799999999999999999999
Q ss_pred cC
Q 043707 343 SS 344 (347)
Q Consensus 343 s~ 344 (347)
|+
T Consensus 392 Gd 393 (420)
T KOG2096|consen 392 GD 393 (420)
T ss_pred cc
Confidence 85
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=3e-21 Score=164.20 Aligned_cols=194 Identities=19% Similarity=0.308 Sum_probs=153.2
Q ss_pred eeccccEEEEeec----CCEEEEecCCCcEEEEeCC------------------CcceeeecCCCCeeEEEEeC-CCCEE
Q 043707 120 VRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------------------KEFSGFKSNSGLVKAIIITG-DSNKI 176 (347)
Q Consensus 120 ~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~------------------~~~~~~~~h~~~V~~l~~sp-~~~~l 176 (347)
..|.+.|..+... ..+.++=++.|.|+||++. +++.++.+|.+.=++|+|+| ....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566666666532 3477778999999999842 34566788999999999999 33468
Q ss_pred EEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeC
Q 043707 177 FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSW 255 (347)
Q Consensus 177 ~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~ 255 (347)
++|..-+.|++|...++.-.. ....+.+|...|-.|+|+|. ...|++|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~v-----------------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKV-----------------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred ccCccccceEeeeeccCceee-----------------------------cCccccccccchhhhccCCccCceEEeeec
Confidence 999888999999998764211 11122359999999999995 678999999
Q ss_pred CCcEEEEeCCCC---EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707 256 DKTLKVWRISDC---KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA 331 (347)
Q Consensus 256 dg~i~vwdl~~~---~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 331 (347)
||+|+|||+|.+ .++.. ++|.+.|+.|.|+..- +||+|+.||+++|||++.-+. ..++..+..|..+|++|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---GQPVATFKYHKAPITSIE 354 (440)
T ss_pred CceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---CCcceeEEeccCCeeEEE
Confidence 999999999988 34443 8999999999998764 899999999999999996543 257788899999999999
Q ss_pred EccCC-CEEEEecCCC
Q 043707 332 VNQES-AVVYCGSSDG 346 (347)
Q Consensus 332 ~~p~~-~~l~sgs~DG 346 (347)
|+|.. ..|+++|.|.
T Consensus 355 W~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDN 370 (440)
T ss_pred eccccCceEEeccCCC
Confidence 99965 6677777664
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.4e-20 Score=162.42 Aligned_cols=218 Identities=18% Similarity=0.299 Sum_probs=166.0
Q ss_pred eccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707 121 RKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS 196 (347)
Q Consensus 121 ~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~ 196 (347)
.|..+|.+++ ++|++|++|+.|..|.||+.. +.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.....
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 7888888776 578999999999999999854 567889999999999999998889999999999999999865422
Q ss_pred e--------eeeecccccccceEEecc-CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 197 V--------HKRVGSLPTFKDYVKSSV-NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 197 ~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
. ...+..+........... ....++.+....+.++.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 1 111222222222222212 2234556666667778889999999999865 57899999999999999999
Q ss_pred EEEEEEe-cCC-----------CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 268 KCLESIN-AHD-----------DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 268 ~~~~~~~-~h~-----------~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
+++.+.+ +|. .+|++++..|.. ++++|+.+|.|++|.+..+-+ ...++..+. -.+.|++|+|++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN 435 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence 9887764 331 278999998876 999999999999999986543 222344433 467899999999
Q ss_pred CCCEEEEe
Q 043707 335 ESAVVYCG 342 (347)
Q Consensus 335 ~~~~l~sg 342 (347)
+|+.|++|
T Consensus 436 sgk~ivag 443 (479)
T KOG0299|consen 436 SGKRIVAG 443 (479)
T ss_pred CCCEEEEe
Confidence 99977765
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=1e-20 Score=166.40 Aligned_cols=200 Identities=17% Similarity=0.320 Sum_probs=156.5
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc-----ceeeec--CCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKS--NSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~-----~~~~~~--h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
.+.+| .|..-|.++..+ .+.++||+. |.|+|||+... +..+.. ....|..+...|||+.|++|+.-.++
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 34444 677777777764 458999986 78999996543 222222 24578999999999999999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
.|||+....+.....+.. ..-....++.+||.++.++++.||.|.|||+.
T Consensus 490 siWDLAapTprikaelts------------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTS------------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred eeeeccCCCcchhhhcCC------------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 999998776443333221 22345678999999999999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc---------------------------ce----
Q 043707 266 DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG---------------------------TK---- 313 (347)
Q Consensus 266 ~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~---------------------------~~---- 313 (347)
+...+..|++|.+.+.||.+++|| .|.+|+-|++||.||++...+. ..
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEE
Confidence 999999999999999999999999 8999999999999999854330 00
Q ss_pred ---eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 314 ---HFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 314 ---~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
......+.-|+..|.+|.|.+.|+++++.+.|.
T Consensus 620 h~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 620 HTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred ecCCccceeecccccEEEEEEecccCceeeecCchh
Confidence 001223456788999999999999999999886
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.2e-22 Score=181.49 Aligned_cols=175 Identities=17% Similarity=0.285 Sum_probs=142.7
Q ss_pred cCCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707 132 SGDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
..++|||++..|.|.+||+.+ .+..|..|...|.++.|++ +..+|++|++||+|++||++..+......
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----- 173 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----- 173 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----
Confidence 366999999999999999765 3557889999999999998 67799999999999999999876432222
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEE
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSV 283 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i 283 (347)
+..+.|+.+.|+| .+..++++.+.|.+.+||+|.. ++...+.+|.++|.|+
T Consensus 174 ---------------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 174 ---------------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred ---------------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 3567899999999 4789999999999999999976 5678889999999999
Q ss_pred EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEec
Q 043707 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGS 343 (347)
Q Consensus 284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs 343 (347)
.|+|++ +|||||.|+.|+|||......... .+ ..-..+|..|+|-|+.. +|++++
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~----~t-InTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPK----HT-INTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccce----eE-EeecceeeeeeeccCccchhhhhh
Confidence 999986 999999999999999975432111 11 11245899999999874 455554
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=2.1e-21 Score=171.10 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=148.9
Q ss_pred eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc---ceeee-----cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE---FSGFK-----SNSGLVKAIIITGDSNKIFTGHQDGKIR 186 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~---~~~~~-----~h~~~V~~l~~sp~~~~l~s~~~Dg~I~ 186 (347)
..++|.+.++|-+|. .+.++|++.||++||||..+. .+.++ +-.-.++.++|++++..||+|+.||.|.
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 345788888888876 348999999999999996543 22222 2334789999999999999999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC--CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD--AVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
+|+...........+. -.|.. .|+||.|+++|++|++-+.|+++++|||
T Consensus 343 ~W~~~~~~v~p~~~vk-----------------------------~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVK-----------------------------DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred eeecCCcccccceEee-----------------------------eccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 9998655433222221 14766 8999999999999999999999999999
Q ss_pred CCCE-EEEEEecCC--CcEEEEEeCCCC-EEEEEeC------CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 265 SDCK-CLESINAHD--DAINSVVAGFDS-LVFTGSA------DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 265 ~~~~-~~~~~~~h~--~~v~~i~~~~~~-~l~s~~~------dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
++.+ ++....+-. -+-+.++|+|+. +|++|.. -|.+.+||..+.. .++.+......|..+.|+|
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------TVYKIDISTASVVRCLWHP 467 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------eEEEecCCCceEEEEeecc
Confidence 9864 555544322 234667899987 7777643 4689999987443 4555555678899999999
Q ss_pred CCCEEEEecCCCC
Q 043707 335 ESAVVYCGSSDGL 347 (347)
Q Consensus 335 ~~~~l~sgs~DG~ 347 (347)
.-+.|.+|+.||+
T Consensus 468 kLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 468 KLNQIFAGSGDGT 480 (641)
T ss_pred hhhheeeecCCCc
Confidence 9999999999985
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=4.4e-21 Score=155.06 Aligned_cols=192 Identities=17% Similarity=0.242 Sum_probs=147.0
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
++++ .|+-.|.+++++ .++|+||+.++.+||||..++ ...+.+|.+.|..+.|.-..+.|++...|++||+||.
T Consensus 94 lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 94 LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 4444 577777787775 669999999999999997644 6678899999999999998889999999999999999
Q ss_pred CCCCCceeeeeccccccc------ceEEe-ccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 191 SRKNPSVHKRVGSLPTFK------DYVKS-SVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
+++............... +++.. ......+++...-.......-...|.+.+++|+...+++|+.|..++.||
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred ccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 999765544433322211 11111 11112222222222222333456688899999999999999999999999
Q ss_pred CCCCEEEEEE-ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 264 ISDCKCLESI-NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 264 l~~~~~~~~~-~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
..+++.+..+ ++|-++|.|+.|+|+| ..++|+.||+|++|.....
T Consensus 253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999999986 8999999999999999 7788999999999998643
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=4.5e-20 Score=152.97 Aligned_cols=220 Identities=16% Similarity=0.230 Sum_probs=162.6
Q ss_pred EeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCC--EEEEEeCCCcEEEEecC
Q 043707 117 GSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSN--KIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~Dg~I~vwd~~ 191 (347)
+....|.++|+++.|+ |..+++|+.|+.+++||+. .....+..|.++|..+.|-+... .|+||+.|++|+.||.+
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 3455689999999984 7799999999999999976 45677888999999999988655 79999999999999999
Q ss_pred CCCCceeeeeccc----ccccceEEeccCCCeEEEE-eecceeeeeec----CCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707 192 RKNPSVHKRVGSL----PTFKDYVKSSVNPKNYVEV-RRNRNVLKIRH----YDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (347)
Q Consensus 192 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~dg~i~vw 262 (347)
...+.....+... .....++........+... ..+.......+ .-.++||+...+....+.|+-+|.+-|.
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 8776554443321 1111222222222222211 11222222222 3458999999998888999999999999
Q ss_pred eCCCC--EEEEEEecCCC---------cEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707 263 RISDC--KCLESINAHDD---------AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 263 dl~~~--~~~~~~~~h~~---------~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l 330 (347)
.+..+ +.-.+|+.|.. +|++|+|+|. |.|+|+|.||++.+||-+... .+.....|..+|++.
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~------kLk~s~~~~qpItcc 299 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART------KLKTSETHPQPITCC 299 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh------hhhccCcCCCcccee
Confidence 99876 44556777763 5788999997 599999999999999987433 356667789999999
Q ss_pred EEccCCCEEEEe
Q 043707 331 AVNQESAVVYCG 342 (347)
Q Consensus 331 ~~~p~~~~l~sg 342 (347)
+|+.+|.+++-+
T Consensus 300 ~fn~~G~ifaYA 311 (347)
T KOG0647|consen 300 SFNRNGSIFAYA 311 (347)
T ss_pred EecCCCCEEEEE
Confidence 999999877654
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-21 Score=176.93 Aligned_cols=181 Identities=23% Similarity=0.480 Sum_probs=152.0
Q ss_pred ecCCEEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707 131 ASGDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG 202 (347)
Q Consensus 131 ~~~~~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~ 202 (347)
+.+++|+||+.||.|++|+... ....++.|...|.+++...+++.|++++.|-+|++|+...........+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3477899999999999998432 25668889999999999999999999999999999999876411111111
Q ss_pred ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE-cCCCCEEEEEeCCCcEEEEeCCCC--EEEEE-------
Q 043707 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL-NAEQGLLYSGSWDKTLKVWRISDC--KCLES------- 272 (347)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~dg~i~vwdl~~~--~~~~~------- 272 (347)
.|.+.|.|++. .++..++++|+-|+.|.+||+.++ +.+.+
T Consensus 115 ------------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 115 ------------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ------------------------------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 49999999999 778889999999999999999977 22322
Q ss_pred -Ee-cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 273 -IN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 273 -~~-~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+. ++...|.+++-++.+ .|++|+..+.|++||.++..+ +-.+.+|...|.+|-.++||..++++|+||+
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence 33 788899999999888 888999999999999997664 5566799999999999999999999999996
No 104
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.86 E-value=8.6e-21 Score=157.04 Aligned_cols=157 Identities=23% Similarity=0.303 Sum_probs=131.1
Q ss_pred CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 152 KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
.....+.+|.+.|+.+.|+|+|..|++|+.|..|.+|++......... .
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-------------------------------l 86 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-------------------------------L 86 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-------------------------------e
Confidence 445667899999999999999999999999999999997654322211 1
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCC
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~ 309 (347)
.+|.++|..+.|.++++.+++++.|++++.||+++|++++.++.|...|+++.-..-| ++.+++.|++++|||++..+
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 1599999999999999999999999999999999999999999999999998743334 78899999999999998432
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..+++ ....+++++.|..++..+++|+-|+
T Consensus 167 ------~~~t~-~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 167 ------AIKTF-ENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ------hhhcc-ccceeEEEEEecccccceeeccccC
Confidence 23332 2355899999999999999998874
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=150.92 Aligned_cols=218 Identities=16% Similarity=0.183 Sum_probs=161.2
Q ss_pred eEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 116 IGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
+.....|++++++.++. ...+++|+.||.|+++|+.. ....+..|..+|.||.+.+....+++|+.|++|++||.+..
T Consensus 47 l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred hhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 33444699999999985 56899999999999999664 35566779999999999998789999999999999999864
Q ss_pred CCceeeeecccccccceEEeccCCCeEEE-----------Eeecceee---eeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVE-----------VRRNRNVL---KIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 259 (347)
... ........+......+..++. ++...... ...-...++|+++-|++.-++.++-||++
T Consensus 127 ~~~-----~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 127 VVV-----GTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV 201 (323)
T ss_pred ccc-----cccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence 321 111112223333333332222 22222111 11234568999999988889999999999
Q ss_pred EEEeCCCC----EEEEEEecCCC---------cEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCC
Q 043707 260 KVWRISDC----KCLESINAHDD---------AINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQEN 325 (347)
Q Consensus 260 ~vwdl~~~----~~~~~~~~h~~---------~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~ 325 (347)
.+=.++.. +....|+.|.. +|++|+|+|- +.|+||+.||.|.+||+...+ .+..+.....
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK------rl~q~~~~~~ 275 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK------RLKQLAKYET 275 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh------hhhhccCCCC
Confidence 98777665 44566777743 7999999997 599999999999999998544 3556666677
Q ss_pred cEEEEEEccCCCEEEEecC
Q 043707 326 AITALAVNQESAVVYCGSS 344 (347)
Q Consensus 326 ~V~~l~~~p~~~~l~sgs~ 344 (347)
.|..++|+.+|..||.+++
T Consensus 276 SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeccCCCeEEEEec
Confidence 8999999999999999875
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-20 Score=153.15 Aligned_cols=163 Identities=20% Similarity=0.337 Sum_probs=132.6
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------------------------------------
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE------------------------------------- 153 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~------------------------------------- 153 (347)
+..+++..+|++.|+|++. +.++|+||+.|.+++|||....
T Consensus 42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 4578999999999999884 5789999999999999984211
Q ss_pred ------------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEecc
Q 043707 154 ------------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSV 215 (347)
Q Consensus 154 ------------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
+..+..+...++.+-|.|-++.|++|..||.|.+||+++++.......
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-------------- 187 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-------------- 187 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh--------------
Confidence 111233556788889999999999999999999999998753222111
Q ss_pred CCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-----------------------
Q 043707 216 NPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES----------------------- 272 (347)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~----------------------- 272 (347)
.|...|+.|+++++..++++++.|.+-++||.++.+++++
T Consensus 188 -----------------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 188 -----------------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred -----------------hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence 3888999999999999999999999999999986554433
Q ss_pred --------------------------------EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 273 --------------------------------INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 273 --------------------------------~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
+++|-++|++++|+|+| ..++|++||.|++...+
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 34588899999999999 77889999999998765
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.2e-20 Score=161.17 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=159.2
Q ss_pred ccccEEEEee--cCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce
Q 043707 122 KEGHIYSLAA--SGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV 197 (347)
Q Consensus 122 h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~ 197 (347)
-.+.|.|+.. +|.+|+.|+..|.|++|.+ +..+..+..|-..|+|+.|+.|+.+|+||+.||.|.+|.+..--...
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 3467888874 5788988889999999984 46677889999999999999999999999999999999875421100
Q ss_pred eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDCKCLESINA 275 (347)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~~~~~~~~~ 275 (347)
... .......+..|.-+|+.+...+. ...|++++.|.++++||+..+..+.++.
T Consensus 160 ~~~-----------------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 160 NDH-----------------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred cCC-----------------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 000 00011223358999999988765 4689999999999999999999998887
Q ss_pred CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc----------cceeeehhhhhccCC--cEEEEEEccCCCEEEEe
Q 043707 276 HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK----------GTKHFLAQVLLKQEN--AITALAVNQESAVVYCG 342 (347)
Q Consensus 276 h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~----------~~~~~~~~~~~~h~~--~V~~l~~~p~~~~l~sg 342 (347)
-...+.+++..|.+ .+++|+++|.|.+.++..... .........+.+|.. +|+|++.+-||.+|++|
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 45679999999976 899999999999998864331 012233456778877 99999999999999999
Q ss_pred cCCCC
Q 043707 343 SSDGL 347 (347)
Q Consensus 343 s~DG~ 347 (347)
+.||.
T Consensus 296 d~dg~ 300 (476)
T KOG0646|consen 296 DEDGK 300 (476)
T ss_pred CCCCC
Confidence 99984
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.8e-22 Score=182.03 Aligned_cols=191 Identities=20% Similarity=0.374 Sum_probs=167.8
Q ss_pred eeeccccEEEEe--ecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707 119 IVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 119 l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
+..|...|.++. .+++.+++|+.|..+-+|...+. +..+.+|..+|.+|.|+++...|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 345777777766 56789999999999999986644 55688999999999999999999999999999999999765
Q ss_pred CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
... .+.+|...+..+.|+|-+.+.++|+.|+.+++||.+...|.+.++
T Consensus 104 ~vr--------------------------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 104 IVR--------------------------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred hhh--------------------------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 322 122599999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 275 AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 275 ~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+|...|.++.|+|+| +++.|++|.+++|||+..+. +...+..|++.|..+.|+|..-++++||.|++
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk------~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK------LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccc------cccccccccccccccccCchhhhhccCCCCce
Confidence 999999999999999 99999999999999996332 67888899999999999999999999999975
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.9e-21 Score=159.72 Aligned_cols=202 Identities=21% Similarity=0.300 Sum_probs=162.5
Q ss_pred cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEe------CC---------------------------------
Q 043707 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWK------NL--------------------------------- 151 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd------~~--------------------------------- 151 (347)
+..+....+|.|.|.++.+. +.++++++.|++..||. ..
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 34677888999999999974 77999999999999995 10
Q ss_pred ---CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecce
Q 043707 152 ---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRN 228 (347)
Q Consensus 152 ---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (347)
.++..+.+|.+.|.+..|...|+++++++.|.+..+||+++++.....
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~L----------------------------- 310 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNIL----------------------------- 310 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccc-----------------------------
Confidence 013347789999999999999999999999999999999998743222
Q ss_pred eeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (347)
Q Consensus 229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~ 307 (347)
.+|....+.++-+|..+++++.+.|-+.++||++.. ..+..|++|.+.|+++.|.-+..+++|+.|.+|+|||++.
T Consensus 311 ---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 311 ---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ---cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence 269999999999999999999999999999999854 4678899999999999999999999999999999999985
Q ss_pred CCcc----------------------------------------ceeeehhhhhccCCcEEEEEEccCC--CEEEEecCC
Q 043707 308 QGKG----------------------------------------TKHFLAQVLLKQENAITALAVNQES--AVVYCGSSD 345 (347)
Q Consensus 308 ~~~~----------------------------------------~~~~~~~~~~~h~~~V~~l~~~p~~--~~l~sgs~D 345 (347)
.... ....+...-.+|...|+|++|..+. .-|++||.|
T Consensus 388 MRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 388 MRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred ccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccccc
Confidence 3220 0001111234677889999997654 446777776
Q ss_pred C
Q 043707 346 G 346 (347)
Q Consensus 346 G 346 (347)
.
T Consensus 468 R 468 (481)
T KOG0300|consen 468 R 468 (481)
T ss_pred c
Confidence 4
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.1e-20 Score=167.33 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=156.5
Q ss_pred eeEeeeec-cccEEEEeec--CCEEEEecCCCcEEEEeCC--Ccceeeec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 115 LIGSIVRK-EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 115 ~i~~l~~h-~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+..+..- +..|+++.|+ |.+|++|..+|.|.|||.. +....+.+ |...|-+++|. +..+.+|+.|+.|..+
T Consensus 208 ~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 208 SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNH 285 (484)
T ss_pred ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEE
Confidence 33444333 7789999975 8899999999999999944 55667777 99999999998 4599999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
|++..+..... +.+|...|..+.|++|+.+|++|+.|+.+.|||....+
T Consensus 286 dvR~~~~~~~~-------------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 286 DVRISQHVVST-------------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred EEecchhhhhh-------------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 99987643331 12599999999999999999999999999999998889
Q ss_pred EEEEEecCCCcEEEEEeCCC--CEEEEEe--CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 269 CLESINAHDDAINSVVAGFD--SLVFTGS--ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~--~~l~s~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
++..+..|.++|.+++|+|- ++||+|+ .|++|++||...+. .+..+ .-...|..|.|++..+.|+++.
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------~i~~v-dtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------RIDSV-DTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------Eeccc-ccCCceeeEEEcCCCCEEEEec
Confidence 99999999999999999995 5999875 69999999998543 23332 2356899999999997777654
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.6e-19 Score=147.35 Aligned_cols=226 Identities=14% Similarity=0.254 Sum_probs=160.4
Q ss_pred eccccEEEEeec--CCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEec
Q 043707 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 121 ~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~ 190 (347)
+|++-|.|+.++ |+.+|||+.|++|+|||..+ .....+.|.+.|..|.|.+ -|+.+++|+.|++++||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 577888888864 99999999999999999543 2445788999999999965 5889999999999999976
Q ss_pred CCCCCce-----------------eeeecccccccceEEeccCCCeEEEEeecceee---------e--------eecCC
Q 043707 191 SRKNPSV-----------------HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL---------K--------IRHYD 236 (347)
Q Consensus 191 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--------~~h~~ 236 (347)
....... ...+..-|....+.........++.+....... . -.+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 3221110 011222233333333333333333333221110 1 13666
Q ss_pred CeeEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCC----EEEEEEecCCCcEEEEEeCCC-C----EEEEEeCCCc
Q 043707 237 AVSCLSLNAE---QGLLYSGSWD-----KTLKVWRISDC----KCLESINAHDDAINSVVAGFD-S----LVFTGSADGT 299 (347)
Q Consensus 237 ~V~~l~~~~~---~~~l~s~s~d-----g~i~vwdl~~~----~~~~~~~~h~~~v~~i~~~~~-~----~l~s~~~dg~ 299 (347)
...|+.|++. ..+|+.|+.+ +.++||..... ..+.++..|..+|+.|+|.|. | +||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 7889999984 5678888865 47889876443 356677899999999999997 3 899999999
Q ss_pred EEEEEcccCC-----------c---cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 300 VKVWRRELQG-----------K---GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 300 I~vwd~~~~~-----------~---~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|+||.+.... . ......+..+..|.+.|+.+.|+-.|..|++.|.||.
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 9999997311 0 1123345567889999999999999999999999995
No 112
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=147.62 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=162.7
Q ss_pred eeeccccEEEEeec---CCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 119 IVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 119 l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
..+|.+.|-.+.++ .++|++++.|++|++||... +...... ++.=.-+.|+|+|++++.+..|..|...|.++.
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 45688878777764 66999999999999999653 3433333 334446789999999999999999999999887
Q ss_pred CCceeeeeccccc-----ccceEEeccCCCeEEEEeecc----eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 194 NPSVHKRVGSLPT-----FKDYVKSSVNPKNYVEVRRNR----NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 194 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
+............ ...-+....++...+++.... ......|.....||.|+|+|++|++|+.|..+-+||+
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 6543322211110 000011111111222222211 1223469999999999999999999999999999999
Q ss_pred CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
...-|++.+..++-+|..|.|+.+| +||+|++|..|-|=+++++.+ + .. ..+.++-..|+|+|...+||-++
T Consensus 219 ~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~-----~-~e-I~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 219 DELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR-----V-WE-IPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred hHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe-----E-EE-eeccCCceeEEecCCCceeeEEe
Confidence 9999999999999999999999998 999999999999999887654 1 11 23577889999999999999988
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
+|.
T Consensus 292 ddk 294 (313)
T KOG1407|consen 292 DDK 294 (313)
T ss_pred cCC
Confidence 774
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=5.3e-20 Score=167.48 Aligned_cols=225 Identities=20% Similarity=0.303 Sum_probs=180.7
Q ss_pred cceeEeeeeccccEEEEee-cCCEEEEecCCCcEEEEeC-CCc---ceeeecCCCCeeE-EEEeC-CCCEEEEEeCCCcE
Q 043707 113 NGLIGSIVRKEGHIYSLAA-SGDLLYTGSDSKNIRVWKN-LKE---FSGFKSNSGLVKA-IIITG-DSNKIFTGHQDGKI 185 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~-~~~~l~tg~~dg~I~vwd~-~~~---~~~~~~h~~~V~~-l~~sp-~~~~l~s~~~Dg~I 185 (347)
.++-+.+.+|...|..+.. ++..+++++.||++++|+. .+. ...+.+|.+.|.. +++.+ ++-.+++|+.|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456788999999988876 4557999999999999984 333 3457888888877 88886 55569999999999
Q ss_pred EEEecCCCCCcee-----eeecccccc--cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 186 RIWKVSRKNPSVH-----KRVGSLPTF--KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 186 ~vwd~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
.+|......+... ..+..+... ..++..+++....+.....-...+.+|...|+.+..-|++ .+++|+.|++
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKT 162 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence 9999988765322 222222211 1245556666655555555555678999999999999887 8999999999
Q ss_pred EEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707 259 LKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 338 (347)
|++|.- ++++++|.+|.+.|..+++-+++-|++++.||.|++|++. ++ .+..+.+|..-|.+++...+++.
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge------~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE------VLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc------eeeeeeccceEEEEEEecCCCCe
Confidence 999974 8899999999999999999999899999999999999994 22 67788999999999998888999
Q ss_pred EEEecCCCC
Q 043707 339 VYCGSSDGL 347 (347)
Q Consensus 339 l~sgs~DG~ 347 (347)
++++|+|++
T Consensus 234 Ivs~gEDrt 242 (745)
T KOG0301|consen 234 IVSTGEDRT 242 (745)
T ss_pred EEEecCCce
Confidence 999999986
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=149.34 Aligned_cols=230 Identities=13% Similarity=0.192 Sum_probs=159.2
Q ss_pred eeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707 115 LIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~ 192 (347)
+-++|..-......+...|.+||.|+.||.|.|||+. ..-+.+.+|..+|.+++|+++|++|+|++.|..|.+||+..
T Consensus 17 l~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 17 LTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred hceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 3444433222333344459999999999999999954 45678899999999999999999999999999999999999
Q ss_pred CCCceeeeecccccc--------cceEEeccCCCeEEEEeecce-eeeee-----cCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 193 KNPSVHKRVGSLPTF--------KDYVKSSVNPKNYVEVRRNRN-VLKIR-----HYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~-----h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
+.+....+....-.. ..++....+...++....... ..+.. -.....+..|.+.|+++++|...|.
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 986555544332111 122233333322222222111 11111 1112334568889999999999999
Q ss_pred EEEEeCCCCEEEEEEecCC-CcEEEEEeCCCC-EEEEEeCCCcEEEEEccc---CCccceeeehhhhhc--cCCcEEEEE
Q 043707 259 LKVWRISDCKCLESINAHD-DAINSVVAGFDS-LVFTGSADGTVKVWRREL---QGKGTKHFLAQVLLK--QENAITALA 331 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~h~-~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~---~~~~~~~~~~~~~~~--h~~~V~~l~ 331 (347)
+.|+|..+.+++..++... ..|..|.++..| .|+.-+.|+.||.|+++. .++.....+.+.++. ...+-.+++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 9999999999999998666 789999998887 889999999999999872 111111222233322 233456889
Q ss_pred EccCCCEEEEecC
Q 043707 332 VNQESAVVYCGSS 344 (347)
Q Consensus 332 ~~p~~~~l~sgs~ 344 (347)
|+.+|.++++|+.
T Consensus 257 fs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 257 FSGDGEYVCAGSA 269 (405)
T ss_pred ecCCccEEEeccc
Confidence 9999999998874
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=4.3e-20 Score=156.47 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=154.6
Q ss_pred cceeEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCC----------------------------------------
Q 043707 113 NGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK---------------------------------------- 152 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~---------------------------------------- 152 (347)
..++.++.+|.|.|..|..+.+.+++++.|++|+.|....
T Consensus 99 R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~ 178 (433)
T KOG0268|consen 99 RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN 178 (433)
T ss_pred hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCC
Confidence 3468899999999999999889999999999999996210
Q ss_pred cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 153 EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 153 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
+++.+..-...|.++.|+| +...|++|+.|+.|.|||++...+......
T Consensus 179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------ 228 (433)
T KOG0268|consen 179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL------------------------------ 228 (433)
T ss_pred ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee------------------------------
Confidence 1111222234577888888 566788888999999999998876544332
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
...-+.|+|+|.+-.+++|+.|..++.||++.. +++...+.|.++|.++.|+|-| .|++|+.|.+|+||..+.+.
T Consensus 229 ---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 229 ---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ---eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 233467999998888999999999999999876 4788889999999999999998 89999999999999997432
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
. ...-....-..|.+|.|+.|.+++++||.||
T Consensus 306 S-----RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 306 S-----RDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred c-----hhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 1 1111122245799999999999999999997
No 116
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-18 Score=137.75 Aligned_cols=216 Identities=18% Similarity=0.232 Sum_probs=153.3
Q ss_pred ccEEEEe--ecCCEEEEecCCCcEEEEeC---CC--------------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707 124 GHIYSLA--ASGDLLYTGSDSKNIRVWKN---LK--------------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184 (347)
Q Consensus 124 ~~V~~l~--~~~~~l~tg~~dg~I~vwd~---~~--------------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 184 (347)
..|.+++ +.|.+.+.|++.++.+|... .+ ..+.-+.|.+.|+|.+|+|+|+.|++|+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 3455555 56889999999999998741 11 12234568899999999999999999999999
Q ss_pred EEEEecCCCCCcee-------eeecc---------cccccceEEeccCCCeEEEEee---c-ceeeeeecCCCeeEEEEc
Q 043707 185 IRIWKVSRKNPSVH-------KRVGS---------LPTFKDYVKSSVNPKNYVEVRR---N-RNVLKIRHYDAVSCLSLN 244 (347)
Q Consensus 185 I~vwd~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~h~~~V~~l~~~ 244 (347)
|++..++....... +..+. ......++.+...+.-.+.+.. + ....+.+|.+.|..+ ++
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ys 191 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YS 191 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EE
Confidence 99987665432110 00000 0111122222222222121111 1 123345788888776 34
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cC-----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeee
Q 043707 245 AEQGLLYSGSWDKTLKVWRISDCKCLESIN--AH-----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFL 316 (347)
Q Consensus 245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h-----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~ 316 (347)
-++-.+++|+.|.+|++||++-..++.++. .| ...|.+++..|.| +|++|-.|....+||++.+ + +
T Consensus 192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-r-----~ 265 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-R-----M 265 (350)
T ss_pred ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-c-----e
Confidence 457899999999999999999998888774 22 3578999999998 8889999999999999833 2 7
Q ss_pred hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 317 AQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
++.+..|...|.++.|+|...+|++|+.|.
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 889999999999999999999999999874
No 117
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.4e-20 Score=156.78 Aligned_cols=190 Identities=16% Similarity=0.259 Sum_probs=154.8
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC-----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL-----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~-----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~v 187 (347)
..+.+..|+++|+-+.+ +|++||+++.|.+..+|++. +..+++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 46678889999998886 58899999999999999733 336788899999999999999999999999999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
||+.++.......- ++...+.+++|.||+..+++|+.|++|..||+. |
T Consensus 296 wDv~tgd~~~~y~~-------------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g 343 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS-------------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G 343 (519)
T ss_pred ccCCcchhhhhccc-------------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence 99999875333221 256789999999999999999999999999985 4
Q ss_pred EEEEEEecC-CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 268 KCLESINAH-DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 268 ~~~~~~~~h-~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..+...++- ...|.+++..+|| ++++.+.|..|++++++.... ..+..-..+|++++.+.+++++++.=
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEEc
Confidence 555555443 3468999999998 888888999999999974322 11333456899999999999877643
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=164.94 Aligned_cols=198 Identities=16% Similarity=0.197 Sum_probs=149.5
Q ss_pred eEeeeeccccEEEEeec-----CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCC--CEEEEEeCCCcE
Q 043707 116 IGSIVRKEGHIYSLAAS-----GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDS--NKIFTGHQDGKI 185 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~-----~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~--~~l~s~~~Dg~I 185 (347)
...+.+|+.+|.|+.++ .++||+++.|..|.|||..+. ++++.+|...|+++.|..+| .++++|+.|+.|
T Consensus 494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 34456677778887765 347777888888888875543 55667777788888877765 567777777665
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
. ++...+.......... .. .-....+..|+..|..+++++++.|+.|+|||+.
T Consensus 574 m-Fr~~qk~~~g~~f~r~-------------------------t~-t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 574 M-FRVNQKASSGRLFPRH-------------------------TQ-TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred h-eehhccccCceecccc-------------------------cc-ccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 4 3433221100000000 00 0023457889999999999999999999999999
Q ss_pred CCEEEEEEec---CCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 266 DCKCLESINA---HDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 266 ~~~~~~~~~~---h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
.++..+.|++ |++....+...|.| ||++.+.|+++.++|.-.++ ++....+|...|+.+.|.+|.++|++
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE------cvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE------CVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch------hhhhhcCcchheeeeeecccchhhee
Confidence 9999999974 66777788889988 99999999999999997543 78999999999999999999999999
Q ss_pred ecCCC
Q 043707 342 GSSDG 346 (347)
Q Consensus 342 gs~DG 346 (347)
.+.||
T Consensus 701 vsgDg 705 (1080)
T KOG1408|consen 701 VSGDG 705 (1080)
T ss_pred ecCCc
Confidence 99998
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.9e-20 Score=159.37 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=145.4
Q ss_pred CCEEEEecCCCcEEEEeCC--Cc---------------------ceeeecCCCCeeEEEEeCC-CCEEEEEeCCCcEEEE
Q 043707 133 GDLLYTGSDSKNIRVWKNL--KE---------------------FSGFKSNSGLVKAIIITGD-SNKIFTGHQDGKIRIW 188 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~--~~---------------------~~~~~~h~~~V~~l~~sp~-~~~l~s~~~Dg~I~vw 188 (347)
|+++|.|..|..|.|||+. .. -..-.+|+.+|.++.|+.+ .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999832 00 0112368999999999873 4589999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|+.++++..... .|.+.|.++.|+|. ...|++|+.|+++.+.|+|..
T Consensus 272 D~~~g~p~~s~~--------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGKPKSSIT--------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCCcceehh--------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 999998644332 38999999999995 789999999999999999964
Q ss_pred EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecC
Q 043707 268 KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSS 344 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~ 344 (347)
.+....-.-.+.|-.++|.|.. .++++..||+|+-+|+|..++ ++.++.+|...|.+|++++.- .+|++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 3332222246779999998875 788899999999999997765 888999999999999999866 78888988
Q ss_pred CCC
Q 043707 345 DGL 347 (347)
Q Consensus 345 DG~ 347 (347)
|++
T Consensus 395 d~~ 397 (463)
T KOG0270|consen 395 DKV 397 (463)
T ss_pred cce
Confidence 874
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=155.86 Aligned_cols=198 Identities=19% Similarity=0.303 Sum_probs=160.2
Q ss_pred CCCCCCCcccccc-------------cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeC-----------CCc
Q 043707 100 PPYSPNENLLSSC-------------NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN-----------LKE 153 (347)
Q Consensus 100 ~~~~p~~~~~~~~-------------~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~-----------~~~ 153 (347)
..-+|.|.++... +.++..+.+|--.|+|+.+. |.+|+||+.||.|.+|.+ .+.
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 3566777765433 34677788899999999984 679999999999999962 244
Q ss_pred ceeeecCCCCeeEEEEeCC--CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 154 FSGFKSNSGLVKAIIITGD--SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~--~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
+..|..|+-+|+++...+. ..+++|++.|.++++||+..+.......
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------------------------------- 215 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------------------------------- 215 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------------------------------
Confidence 6778899999999999774 3589999999999999999886443332
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------------EEEEEEecCCC--cEEEEEeCCCC-EEE
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC----------------KCLESINAHDD--AINSVVAGFDS-LVF 292 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~----------------~~~~~~~~h~~--~v~~i~~~~~~-~l~ 292 (347)
....+.+++++|.+..++.|+.+|.|.+.++... ..+..+.+|.+ .|+|++.+-|| +|+
T Consensus 216 --fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 --FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred --cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 5678999999999999999999999999887432 24566778988 99999999998 999
Q ss_pred EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
+|+.||.|+|||+... ++++++....++|+.+.+.|-.
T Consensus 294 SGd~dg~VcvWdi~S~------Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSK------QCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchH------HHHHHHhhhccccceeEeeccc
Confidence 9999999999999733 3666666567899999986643
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.7e-19 Score=155.25 Aligned_cols=189 Identities=17% Similarity=0.312 Sum_probs=147.3
Q ss_pred eccccEEEEeec---CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCC
Q 043707 121 RKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 121 ~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
+|+..|.++.++ .+.||+|+.|.+|++||+. ++...+..|.+.|.+++|+| ....|++|+.|++|++.|.+...
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 688889999987 4589999999999999954 66788888999999999999 67899999999999999998532
Q ss_pred CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-EEEEE
Q 043707 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC-KCLES 272 (347)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~-~~~~~ 272 (347)
..... ....+.|-.++|++. ...++++..||+++-+|+|.. +++.+
T Consensus 321 ~s~~~--------------------------------wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 321 NSGKE--------------------------------WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred ccCce--------------------------------EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 11111 125678899999995 567788889999999999976 89999
Q ss_pred EecCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707 273 INAHDDAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD 345 (347)
Q Consensus 273 ~~~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D 345 (347)
+++|.+.|.+|.++.. +++++++.|+.|++|++..... +..-.+.+ .-+...|.++.|+- -.|+.||..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccc--cccceeecccCCCcceEEEecCcc
Confidence 9999999999999875 4999999999999999974332 11111111 11235677777765 456666654
No 122
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=5.3e-19 Score=145.84 Aligned_cols=197 Identities=19% Similarity=0.321 Sum_probs=151.7
Q ss_pred EeeeeccccEEEEee---cCCEEEEecCC-------CcEEEEeCCCccee-----------ee-cCCCCeeEEEEeCCCC
Q 043707 117 GSIVRKEGHIYSLAA---SGDLLYTGSDS-------KNIRVWKNLKEFSG-----------FK-SNSGLVKAIIITGDSN 174 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~---~~~~l~tg~~d-------g~I~vwd~~~~~~~-----------~~-~h~~~V~~l~~sp~~~ 174 (347)
+.+..|.++|+.++. +.++|+|+..+ ..+-||.+.+.+.. +. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 456678889999985 45688887653 24778986544332 22 3557899999999998
Q ss_pred EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC--CCCEEEE
Q 043707 175 KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA--EQGLLYS 252 (347)
Q Consensus 175 ~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s 252 (347)
.+++-. |..|.+|++.............. ..++....++-+|+| +++.+++
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------------s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------------SAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccc--------------------------cccccceecccccCCCCccceEEE
Confidence 988877 88999999987764211111000 012556677788998 5777777
Q ss_pred EeCCCcEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707 253 GSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITA 329 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~ 329 (347)
.+ |+++..||+|+.++...+ .+|...|..+.|+|+. +|++|+.||.|++||.+.... +++.+.+|..+|++
T Consensus 190 t~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 190 TS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQELPGHSHWVWA 263 (370)
T ss_pred eC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----cccccCCCceEEEE
Confidence 65 899999999999887776 4888999999999986 899999999999999996554 89999999999999
Q ss_pred EEEccCC-CEEEEecCCC
Q 043707 330 LAVNQES-AVVYCGSSDG 346 (347)
Q Consensus 330 l~~~p~~-~~l~sgs~DG 346 (347)
|.|+|.- ++|++||+|.
T Consensus 264 VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDS 281 (370)
T ss_pred EEecCccceEEEecCCCc
Confidence 9999965 7888888874
No 123
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.82 E-value=8.7e-19 Score=148.73 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=140.9
Q ss_pred CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707 151 LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230 (347)
Q Consensus 151 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
...+..|..|+..|.+++.+|+.++++||+.|..-.||++.++......
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el------------------------------- 102 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL------------------------------- 102 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-------------------------------
Confidence 4457789999999999999999999999999999999999998732221
Q ss_pred eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
.+|.+.|+|+.|+.++.+|++|..+|.|+||+..++.....+...-..+.=+.|+|.+ .|++|+.||.|.+|.+..++
T Consensus 103 -tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 103 -TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred -cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 2699999999999999999999999999999999998888886555667788999987 88999999999999997542
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+.+.+|..++++=.|.|+|+.++++..||+
T Consensus 182 ------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 182 ------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ------eeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 67888999999999999999999999999985
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.9e-18 Score=155.05 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=159.8
Q ss_pred eeeecc-ccEEEEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 118 SIVRKE-GHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 118 ~l~~h~-~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
.+.+++ ..|..++|. +..|.+.+.+|.|.-||+. +....+....+.|++++.+|.+..++.|+.||.+...+...+
T Consensus 63 vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred EEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 344444 478899987 7799999999999999965 456667778899999999999999999999998777777766
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~ 273 (347)
+........ ...+.|.+++|++++..|+.|+.||.|++||...+..+...
T Consensus 143 ~I~~~r~l~------------------------------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 143 KITYKRSLM------------------------------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred eEEEEeecc------------------------------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence 533322221 35688999999999999999999999999999998877632
Q ss_pred e-----c---CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 274 N-----A---HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 274 ~-----~---h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
. . ...-|+++.+-.++.|++|..-|+|++||...+. +.+....|.+.|.+|+..+++.++.++|.|
T Consensus 193 ~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 193 TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT------LIQSHSCHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc------hhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence 2 1 2335788888888999999999999999998543 788889999999999999999999999999
Q ss_pred CC
Q 043707 346 GL 347 (347)
Q Consensus 346 G~ 347 (347)
+.
T Consensus 267 ~~ 268 (691)
T KOG2048|consen 267 PK 268 (691)
T ss_pred Cc
Confidence 73
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=145.26 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=146.1
Q ss_pred ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee------------eeecccccccceEEeccCCCeEE
Q 043707 154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH------------KRVGSLPTFKDYVKSSVNPKNYV 221 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+..+++|.+.|++++|+.||++|+|++.|+.||||+++.-....+ ..+...|....++.+..++..+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 346789999999999999999999999999999999986433221 22333455555555555555433
Q ss_pred EEeeccee---------------eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707 222 EVRRNRNV---------------LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (347)
Q Consensus 222 ~~~~~~~~---------------~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~ 286 (347)
......+. ....|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+...+..-...+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 22211110 112355556667777778999999999999999998 99999998888777888999
Q ss_pred CCC-EEEEEeCCCcEEEEEcccCCccceee--ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 287 FDS-LVFTGSADGTVKVWRRELQGKGTKHF--LAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 287 ~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|+| +|++++----|+||.+-.+.+++-.. ....|.+|+..|+.++|+++.+.+++.|.||+
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 999 78888888899999986655433222 34567899999999999999999999999995
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=5.2e-19 Score=154.16 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=158.3
Q ss_pred eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------------------ceee-ecCCCCeeEEEEeCCC
Q 043707 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-------------------FSGF-KSNSGLVKAIIITGDS 173 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-------------------~~~~-~~h~~~V~~l~~sp~~ 173 (347)
+..+..|.-.|+|+.. +.++.++++.||+|.-|+.... .+.- +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677789989988875 5679999999999999973211 1111 3788899999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE
Q 043707 174 NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG 253 (347)
Q Consensus 174 ~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 253 (347)
++|++|+.|..|.||+.++.+.... +.+|.+.|.+++|-.....|+++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~--------------------------------~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKV--------------------------------FKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhc--------------------------------ccccccceeeeeeecCccceeee
Confidence 9999999999999999998875433 12599999999999988999999
Q ss_pred eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEE
Q 043707 254 SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAV 332 (347)
Q Consensus 254 s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 332 (347)
+.|+++++|++.....+.++.+|++.|..|.....+.++ +|+.|+++++|++... ..-.+.+|.+.+-|++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGEGSIDCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-------ceeeeeCCCCCeeeEEE
Confidence 999999999999999999999999999999776666555 5569999999999522 23345677889999999
Q ss_pred ccCCCEEEEecCCCC
Q 043707 333 NQESAVVYCGSSDGL 347 (347)
Q Consensus 333 ~p~~~~l~sgs~DG~ 347 (347)
-.+ ..+++||.||.
T Consensus 336 In~-~HfvsGSdnG~ 349 (479)
T KOG0299|consen 336 IND-EHFVSGSDNGS 349 (479)
T ss_pred ecc-cceeeccCCce
Confidence 854 77889999984
No 127
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.8e-20 Score=174.92 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=156.4
Q ss_pred ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcceeeec----CCCCeeEEEEeC-CCCEEEEEeCCCcE
Q 043707 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFSGFKS----NSGLVKAIIITG-DSNKIFTGHQDGKI 185 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~~~~~~----h~~~V~~l~~sp-~~~~l~s~~~Dg~I 185 (347)
.++.+...|+|+|..++++ +++||+|+.||.|.|||+.+.-..+.. -.+.|.+++|+. ....|++++.+|++
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 4678888999999999986 669999999999999997765433322 457899999987 45578999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCC---cEEE
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDK---TLKV 261 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg---~i~v 261 (347)
.|||++..+++...... .....+..++|||+. ..|++++.|. .|.+
T Consensus 187 ~iWDlr~~~pii~ls~~------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDT------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred eeccccCCCcccccccC------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 99999988654433211 122457889999974 4566666543 4999
Q ss_pred EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-
Q 043707 262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA- 337 (347)
Q Consensus 262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~- 337 (347)
||+|.. .+++.++.|+..|.++.|++.+ ++++++.|++|.+|+.++++ .+..+.....++..+.|+|...
T Consensus 237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE------vl~~~p~~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE------VLGELPAQGNWCFDVQWCPRNPS 310 (1049)
T ss_pred ecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce------EeeecCCCCcceeeeeecCCCcc
Confidence 999864 5788889999999999999865 99999999999999998654 5666667788999999999774
Q ss_pred EEEEecCCC
Q 043707 338 VVYCGSSDG 346 (347)
Q Consensus 338 ~l~sgs~DG 346 (347)
.+++++-||
T Consensus 311 ~~A~asfdg 319 (1049)
T KOG0307|consen 311 VMAAASFDG 319 (1049)
T ss_pred hhhhheecc
Confidence 777777776
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.5e-18 Score=141.04 Aligned_cols=182 Identities=18% Similarity=0.260 Sum_probs=143.2
Q ss_pred ccEEEEeec--CCEEEEecCCCcEEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
..|..+.++ +..|+.++.||.+++||... .+...-.|..++.+++|.++ ..+++|+.||.|+++|+.+++.....
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig- 91 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG- 91 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec-
Confidence 456666664 55777778999999999653 34445568899999999985 48999999999999999988632221
Q ss_pred ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcE
Q 043707 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280 (347)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v 280 (347)
.|...|.||...+....+++|++|++|++||.+...+...+... ..|
T Consensus 92 --------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkV 138 (323)
T KOG1036|consen 92 --------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKV 138 (323)
T ss_pred --------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceE
Confidence 39999999999998899999999999999999986666666533 378
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh-hhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 281 NSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV-LLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 281 ~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++... +..|+.|+.|..|.+||++.... ..+. -..-.-.+.+|++.|++.-.++++-||
T Consensus 139 y~~~v~-g~~LvVg~~~r~v~iyDLRn~~~-----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 139 YCMDVS-GNRLVVGTSDRKVLIYDLRNLDE-----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred EEEecc-CCEEEEeecCceEEEEEcccccc-----hhhhccccceeEEEEEEEecCCCceEEEeecc
Confidence 888765 45888899999999999996654 2221 122355799999999888888888887
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1.1e-18 Score=152.09 Aligned_cols=199 Identities=18% Similarity=0.210 Sum_probs=157.6
Q ss_pred eEeeeeccccEEEEeec----CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc
Q 043707 116 IGSIVRKEGHIYSLAAS----GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK 184 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~----~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~ 184 (347)
...++.|.+.|++++|. .+++++|+.-|.|-+||+. ..+..+..|.++|.+|.|+| +..++++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44566688999999975 2589999999999999973 23556788999999999999 6679999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
||+-|++........... .....+..+.|+.+...++.+..=|.+.+||+
T Consensus 259 iR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred eeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 999999876432211110 02334567788887777777777779999999
Q ss_pred CCCEE-EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 265 SDCKC-LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 265 ~~~~~-~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
++.+. ...+.-|+..|..|+++|.. +||+++.|++++|||++....+. .+.-....|...|.+..|+|.+..|++
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--CcceecccccceeeeeEEcCCCCceEe
Confidence 98765 67778899999999999975 99999999999999999654321 133445678999999999999988999
Q ss_pred ecCCC
Q 043707 342 GSSDG 346 (347)
Q Consensus 342 gs~DG 346 (347)
.+.|.
T Consensus 387 T~~D~ 391 (498)
T KOG4328|consen 387 TCQDN 391 (498)
T ss_pred eccCC
Confidence 98875
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=1e-19 Score=156.47 Aligned_cols=226 Identities=17% Similarity=0.239 Sum_probs=147.0
Q ss_pred eEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCC----cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 116 IGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
...+..|.+.+..+.| +.+.|++|+.|..|++|+... ....+.+..+.|+.+.|.+++.++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3456679999999987 347999999999999998542 3566777788999999999999999999999999999
Q ss_pred cCCCCCceeeeecccccc-cceE-----EeccCCCeEEEEeecceeeeeecCC---CeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 190 VSRKNPSVHKRVGSLPTF-KDYV-----KSSVNPKNYVEVRRNRNVLKIRHYD---AVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
+...+............. ..+. .........+..+.-....-....- .+..|..+ ...+++|..|++|+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceE
Confidence 988764322221000000 0000 0000000011111100000000000 11222222 45567777788888
Q ss_pred EEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 261 VWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
+||.+...++.....+. .|+++..++++ .|++++.|.++.+.|+++.+-.......... .....+.+.|+|++.|+
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k--~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK--CASDWTRVVFSPDGSYV 402 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc--cccccceeEECCCCcee
Confidence 88888888888887665 79999999888 7778899999999999865431111111122 23358999999999999
Q ss_pred EEecCCC
Q 043707 340 YCGSSDG 346 (347)
Q Consensus 340 ~sgs~DG 346 (347)
++||.||
T Consensus 403 aAGS~dg 409 (459)
T KOG0288|consen 403 AAGSADG 409 (459)
T ss_pred eeccCCC
Confidence 9999998
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.1e-18 Score=148.09 Aligned_cols=221 Identities=14% Similarity=0.225 Sum_probs=164.7
Q ss_pred cccEEEEeec--CCEEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCC
Q 043707 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 123 ~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
.+.|.++.+. ..+|++|+.||+++||.+. ..++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3568888876 4599999999999999754 33455555568999999999998 899999999999999998876
Q ss_pred ceeeeecccc--cccce--------EEeccCCC--eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 196 SVHKRVGSLP--TFKDY--------VKSSVNPK--NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 196 ~~~~~~~~~~--~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
.....+...+ ....| +....+.. .++...+..-+..+.-.+.|..++|+.+++.|++++.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 5544443333 11111 11111111 111222233333445678899999999999999999999999999
Q ss_pred CCCCEEEEEEecCCCcE--EEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707 264 ISDCKCLESINAHDDAI--NSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v--~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~ 340 (347)
+++..+++.+.. ++.| ++++.++++ +||+|+..|.|.|||.+..-......++..+..-...|++|.|+++.+.||
T Consensus 373 l~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 373 LRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred cCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 999999999873 3333 455666776 999999999999999876544445567888888888999999999999999
Q ss_pred EecC
Q 043707 341 CGSS 344 (347)
Q Consensus 341 sgs~ 344 (347)
.+|.
T Consensus 452 iaS~ 455 (514)
T KOG2055|consen 452 IASR 455 (514)
T ss_pred hhhh
Confidence 8875
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.3e-18 Score=159.01 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=152.8
Q ss_pred ccccEEEEeecCCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~ 199 (347)
+...|++++..+.+|++|+.+++|.+|..... -..+.-.+-++.+++|+.+|++++.|+.|-.|++-++.+.......
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 66678899988889999999999999985432 2234445678999999999999999999999999999877543332
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC---
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH--- 276 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h--- 276 (347)
.+|..+|.+|.|+|++++|++.+.||.++|||+.++.+..++..-
T Consensus 135 --------------------------------rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 135 --------------------------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred --------------------------------cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 369999999999999999999999999999999998877666431
Q ss_pred -----CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhh--ccCCcEEEEEEccCCCEEEEecCCC
Q 043707 277 -----DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLL--KQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 277 -----~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
...+..++|+|++ .++..+.|+.|++|+...... ...+. .+...+.++.|+|+|+|||+++.||
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~------~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL------QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee------heeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 3456778999995 899999999999999985432 22222 2344599999999999999999987
No 133
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=2.3e-18 Score=147.59 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=149.4
Q ss_pred eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK 184 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~ 184 (347)
.+.+|++.|..++|+ ...+|+|++|.+|.||++. +.+..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 466899999999975 5589999999999999743 34677899999999999999 5568999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
|.+|++.+++.... +.|.+.|.+++|+.+|.+|++.+.|+.|+|||.
T Consensus 156 v~iWnv~tgeali~---------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT---------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EEEEeccCCceeee---------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 99999999864332 239999999999999999999999999999999
Q ss_pred CCCEEEEEEecCCCc-EEEEEeCCCCEEEEEe----CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 265 SDCKCLESINAHDDA-INSVVAGFDSLVFTGS----ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~-v~~i~~~~~~~l~s~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
++++.+..-.+|.+. -..+.|-.++.+++.+ .+.++-+||....... ...+.+. ....|.---|.++..+|
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elD-tSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELD-TSNGVLLPFYDPDTSIV 278 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEec-cCCceEEeeecCCCCEE
Confidence 999999988888753 3344566666566544 5789999998755431 1122222 24456556677888888
Q ss_pred EEecC
Q 043707 340 YCGSS 344 (347)
Q Consensus 340 ~sgs~ 344 (347)
+.+|.
T Consensus 279 Yl~GK 283 (472)
T KOG0303|consen 279 YLCGK 283 (472)
T ss_pred EEEec
Confidence 77664
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.1e-19 Score=171.96 Aligned_cols=178 Identities=18% Similarity=0.311 Sum_probs=145.0
Q ss_pred EEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707 135 LLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
+|+.|.+||.|.+||..+ .+..+..|.+.|..+.|++ .++.|++|+.||.|.|||+..-+...... .
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~-- 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S-- 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C--
Confidence 699999999999998443 2556788999999999999 55699999999999999998754322111 0
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC--cEEE
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDD--AINS 282 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~--~v~~ 282 (347)
..-.+.|.|++|+.. .+.|++++.+|++.|||+|..+++-.+..+.. .+..
T Consensus 158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 014578999999985 67899999999999999999988888876654 4778
Q ss_pred EEeCCCC--EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCCCC
Q 043707 283 VVAGFDS--LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSDGL 347 (347)
Q Consensus 283 i~~~~~~--~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG~ 347 (347)
|+|+|+. .|++++.|. .|.+||+|.... +++++.+|+..|.+|.|++.+ ++|++++.|+.
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 9999997 666665543 799999986544 788899999999999999977 99999999973
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=2.1e-17 Score=145.74 Aligned_cols=206 Identities=16% Similarity=0.271 Sum_probs=156.3
Q ss_pred CCCCCCCCccccccc------------ceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC-Cc-----------
Q 043707 99 MPPYSPNENLLSSCN------------GLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL-KE----------- 153 (347)
Q Consensus 99 ~~~~~p~~~~~~~~~------------~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~-~~----------- 153 (347)
...|.++|..+.+.. ...+....|.+.|+++..- ...|++|+.|..|..||-. +.
T Consensus 251 ~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 251 CVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred EEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcC
Confidence 335677776654432 2445566899999998853 2345569999999999711 00
Q ss_pred ------------------------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707 154 ------------------------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS 203 (347)
Q Consensus 154 ------------------------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~ 203 (347)
....++|....+.++.+|+..+++||++|+.+++|+ ..+....+.
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--- 405 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--- 405 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE---
Confidence 011346888899999999999999999999999999 333222222
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i 283 (347)
..+++.|+.|+|.| .++.|...|...|.|.++...+..-. ...+++++
T Consensus 406 ------------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v 453 (626)
T KOG2106|consen 406 ------------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVV 453 (626)
T ss_pred ------------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEE
Confidence 45788999999999 99999999999999999855554444 48899999
Q ss_pred EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.|+|+| +||.|+.|+.|+||.+...+. +....... +..+|+.+.|++|+++|.+-+-|
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGR--KYSRVGKC--SGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCc--EEEEeeee--cCceeEEeeecCCCceEEeccCc
Confidence 999999 999999999999999986655 22223333 34899999999999999987655
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=2.1e-17 Score=145.79 Aligned_cols=216 Identities=17% Similarity=0.231 Sum_probs=156.0
Q ss_pred eeeecc-ccEEEEeecC-CEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 118 SIVRKE-GHIYSLAASG-DLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 118 ~l~~h~-~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
.+..++ ..|.|+.|.+ .-++||+.+|.|.||+.... .+....|.+.|.+++...+| .|++|+.|..|..||-.-.
T Consensus 240 ~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYR 318 (626)
T ss_pred ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEecccccc
Confidence 343443 4799999864 36889999999999986533 33444899999999999999 5566999999999993322
Q ss_pred CCceeeeecccccc--------cceEEeccCCCeEE--EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 194 NPSVHKRVGSLPTF--------KDYVKSSVNPKNYV--EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 194 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
+ .....++..... .+++... ..+.++ .+.........+|.+....++.+|+.+.+++++.|+.+++|+
T Consensus 319 k-~r~~elPe~~G~iRtv~e~~~di~vGT-trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 319 K-LRETELPEQFGPIRTVAEGKGDILVGT-TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred c-cccccCchhcCCeeEEecCCCcEEEee-ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 2 222222111111 1111111 111111 333444566678999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..+++-+.. -..++.|+.|+|.+.+|.|...|...|.|.++.. ++..-.. ..++++++|+|+|.+||.|+
T Consensus 397 --~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~------lv~~~~d-~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 397 --DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD------LVTIHTD-NEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred --CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccce------eEEEEec-CCceEEEEEcCCCCEEEEec
Confidence 445554443 3567889999999999999999999999998532 3333223 77999999999999999999
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
.|+
T Consensus 467 ~d~ 469 (626)
T KOG2106|consen 467 HDN 469 (626)
T ss_pred CCC
Confidence 997
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.4e-17 Score=151.89 Aligned_cols=231 Identities=16% Similarity=0.241 Sum_probs=163.5
Q ss_pred eeEeeeeccccEEEEee--cCC---EEEEecCCCcEEEEeCC----CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 115 LIGSIVRKEGHIYSLAA--SGD---LLYTGSDSKNIRVWKNL----KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~---~l~tg~~dg~I~vwd~~----~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
.+.++.+|.+.|+|+.+ +.+ ++++|+.|+.|++|.+. ..+..+++|...+.| +......+.+.+.|+++
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c--v~a~~~~~~~~~ad~~v 123 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC--VVARSSVMTCKAADGTV 123 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE--EEeeeeEEEeeccCceE
Confidence 47789999999999996 333 89999999999999865 234556666555544 44333233334789999
Q ss_pred EEEecCCCCCcee------------eeecccccccceEEeccCCCeEEEEeecc------eeeeeecCCCeeEEEEcCCC
Q 043707 186 RIWKVSRKNPSVH------------KRVGSLPTFKDYVKSSVNPKNYVEVRRNR------NVLKIRHYDAVSCLSLNAEQ 247 (347)
Q Consensus 186 ~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~V~~l~~~~~~ 247 (347)
.+||....+.... ..+..++....++......+..+.+.... ...+.+|.+.|..++|...+
T Consensus 124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG 203 (764)
T ss_pred EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence 9999955441110 11122333445555555555555555433 23456899999999998754
Q ss_pred C---EEEEEeCCCcEEEEeCCCCE---------------------EEEEE----------ecCCCcEEEEEeCCCC-EEE
Q 043707 248 G---LLYSGSWDKTLKVWRISDCK---------------------CLESI----------NAHDDAINSVVAGFDS-LVF 292 (347)
Q Consensus 248 ~---~l~s~s~dg~i~vwdl~~~~---------------------~~~~~----------~~h~~~v~~i~~~~~~-~l~ 292 (347)
. +|++++.|..|+||.+.-+. ++..+ .+|++.|.++.|+|.+ .|+
T Consensus 204 ~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 204 GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 4 88999999999999874211 22222 3899999999999999 899
Q ss_pred EEeCCCcEEEEEcccCCc----------------------------------------------cceeeehhhhhccCCc
Q 043707 293 TGSADGTVKVWRRELQGK----------------------------------------------GTKHFLAQVLLKQENA 326 (347)
Q Consensus 293 s~~~dg~I~vwd~~~~~~----------------------------------------------~~~~~~~~~~~~h~~~ 326 (347)
+++.|.++.+|....... .....+.....+|...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999998753210 1112334456789999
Q ss_pred EEEEEEccCCCEEEEecCCCC
Q 043707 327 ITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 327 V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|++|+|+|.|.+|++.|.|.|
T Consensus 364 V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred ceeeeecCCCCEEEEeccccc
Confidence 999999999999999999975
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=1.5e-18 Score=152.83 Aligned_cols=178 Identities=16% Similarity=0.292 Sum_probs=150.2
Q ss_pred EEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
++.++.++++++..||.|.|||+. ..++.|++|+..+.||.++++|..|.||+.|.+||.||++.++......
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----- 590 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----- 590 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-----
Confidence 556788899999999999999965 4578899999999999999999999999999999999999886543322
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~ 285 (347)
....|.++..+|++.+|+.|-..+.+-|.... +.....+..|+..|.++.|
T Consensus 591 ----------------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 591 ----------------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF 641 (705)
T ss_pred ----------------------------hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence 45679999999999999999999988888764 4455677789999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 286 GFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 286 ~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+.| ++++.+.|+-+..|....+.. +.+ . .-...|+++..+-|.++|++|+-|.
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGas-----iFq-s-kE~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQ-S-KESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cccCceeeecCchhhhhhccCccccc-----eee-c-cccCcceeeeeccCceEEEecCCCc
Confidence 9988 899999999999998875543 111 1 2256899999999999999999874
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=3.7e-18 Score=156.05 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=152.3
Q ss_pred EEeec--CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeC-C----------CCEEEEEeCCCcEEEEe
Q 043707 128 SLAAS--GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITG-D----------SNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 128 ~l~~~--~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp-~----------~~~l~s~~~Dg~I~vwd 189 (347)
++.|+ .+.|.....|..++|||+... ...+..|...|+++.--| + ...|.||+.|++||+||
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 34454 558888999999999996533 345567888888887655 1 12599999999999999
Q ss_pred cCCCCCcee--eeecccccccceEEeccCCCeEE-----EEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707 190 VSRKNPSVH--KRVGSLPTFKDYVKSSVNPKNYV-----EVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (347)
Q Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vw 262 (347)
+........ ..+-. .....+.... ....++ .+..............+++++.+|++++|++|..-|+|+||
T Consensus 409 l~~ctnn~vyrRNils-~~l~ki~y~d-~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILS-ANLSKIPYED-STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred cccccccceeecccch-hhhhcCcccc-CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 986422111 11000 0000000000 000000 00011111122345679999999999999999999999999
Q ss_pred eCCCCEEEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC--
Q 043707 263 RISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-- 336 (347)
Q Consensus 263 dl~~~~~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-- 336 (347)
|+...+....+.+|+..|.|+.++... +||+++.|+-|.|||+..+- .+++++.+|...|++|+|..+|
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCc
Confidence 999999999999999999999998642 89999999999999997444 4899999999999999999888
Q ss_pred CEEEEecCCC
Q 043707 337 AVVYCGSSDG 346 (347)
Q Consensus 337 ~~l~sgs~DG 346 (347)
..++++|.|.
T Consensus 562 ~~MiscGADk 571 (1080)
T KOG1408|consen 562 RKMISCGADK 571 (1080)
T ss_pred eEEEeccCch
Confidence 7899999885
No 140
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.4e-17 Score=134.90 Aligned_cols=190 Identities=16% Similarity=0.257 Sum_probs=135.1
Q ss_pred ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-------c-cccceEEecc---CCCeEEE
Q 043707 154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL-------P-TFKDYVKSSV---NPKNYVE 222 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~-------~-~~~~~~~~~~---~~~~~~~ 222 (347)
.+.|....+.|.++.|+++|..+++++.|.+|+|||..++++......... . .....+.+.. +...++.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 344555678899999999999999999999999999998876443322211 0 1111111111 1234555
Q ss_pred Eeeccee-eeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcE
Q 043707 223 VRRNRNV-LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTV 300 (347)
Q Consensus 223 ~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I 300 (347)
+.+++.+ .+.+|...|..|+.+|-+..+++++.|++|++||++..+|...+.....++ ++|.|+| ++|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeE
Confidence 5555443 456899999999999999999999999999999999988887776544444 7899999 55555555599
Q ss_pred EEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 301 KVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 301 ~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
++||++.-+++..... ..........+.|.|+|||++|+.+...+
T Consensus 165 kLyD~Rs~dkgPF~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTF-SITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred EEEEecccCCCCceeE-ccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 9999997655321111 11114466899999999999988877654
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.2e-17 Score=143.72 Aligned_cols=172 Identities=20% Similarity=0.332 Sum_probs=125.6
Q ss_pred eeecc-ccEEEEeec---CCEEEEecCCCcEEEEeCC-----C------cceeeecCCCCeeEEEEeCCCCEEEEEeCCC
Q 043707 119 IVRKE-GHIYSLAAS---GDLLYTGSDSKNIRVWKNL-----K------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDG 183 (347)
Q Consensus 119 l~~h~-~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-----~------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg 183 (347)
+.-|. .+|+.+.+. .+.|+||+.|..|++|... + -...+..|..+|+++.|+|+|..|++|+.+|
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 33343 367777763 3389999999999999632 1 1345677999999999999999999999999
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
.|.+|............ ....+....+ -.....+|...|..++|+|++.++++++.|..+++||
T Consensus 88 ~v~lWk~~~~~~~~~d~-----------e~~~~ke~w~-----v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADT-----------EADLNKEKWV-----VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred eEEEEEecCcCCccccc-----------hhhhCccceE-----EEEEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 99999876422110000 0000000000 1122335999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
+..|+.+..+..|...+..++|.|.+ ++++-+.|...+++.+.
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 99999999999999888888888865 67777777655555544
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=8.5e-18 Score=156.08 Aligned_cols=183 Identities=15% Similarity=0.257 Sum_probs=153.0
Q ss_pred ccEEEE--eecCCEEEEecCCCcEEEEeCCCcc--eee---ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707 124 GHIYSL--AASGDLLYTGSDSKNIRVWKNLKEF--SGF---KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS 196 (347)
Q Consensus 124 ~~V~~l--~~~~~~l~tg~~dg~I~vwd~~~~~--~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~ 196 (347)
..++|+ .++|++.+.|...|.|-+|+....+ ..| ..|.++|.+++...-++.+++++.+|.+++||..++...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 345444 4689999999999999999976443 233 579999999999998889999999999999999887533
Q ss_pred eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (347)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h 276 (347)
.... -...+.++..+....+++.+..|-.|+++|..+.+.++.|.+|
T Consensus 529 ~~l~---------------------------------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 529 KSLR---------------------------------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eeec---------------------------------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 3222 3456788888888889999999999999999999999999999
Q ss_pred CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 277 ~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+.|+++.|+||| +|++++.|++|++||+.++.. +-.+ .-..+.+.+.|+|+|.+||+...|+
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l------ID~~-~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL------IDGL-LVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce------eeeE-ecCCcceeeEECCCCCEEEEEEecC
Confidence 9999999999999 999999999999999986542 2211 2256889999999999999998874
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.8e-17 Score=151.26 Aligned_cols=181 Identities=14% Similarity=0.220 Sum_probs=141.3
Q ss_pred EEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707 127 YSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 127 ~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
.++.-+|+++|.|++|-.|++.+.. .....+++|.++|.+|.|+|++++||+.+.||+|++||+.++....... ..
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~--~v 179 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT--GV 179 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc--cC
Confidence 3444567799999999999999854 4467889999999999999999999999999999999999875432211 11
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEE
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINS 282 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~ 282 (347)
....++ .-...+..++|+|++..|+..+.|+.|++|+...++....+. .+...+.+
T Consensus 180 ~k~n~~----------------------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 180 DKDNEF----------------------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred Cccccc----------------------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 100000 024556789999998888888889999999999998887775 34455999
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 283 VVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 283 i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
+.|+|.| |||+++.||.|.|||.++... ......|++++|.|++..|-.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHER----------HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccchh----------ccccceeEEEecCCCCCeeEE
Confidence 9999999 999999999999999984211 223558999999998865543
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=6.1e-18 Score=141.87 Aligned_cols=214 Identities=17% Similarity=0.284 Sum_probs=153.8
Q ss_pred ceeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 114 GLIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
...+.+.+|.+.|..+.+. .+++++|+.|..||+|++.+. +....+|.+.|.++.|+++|.+|++|+.|..|
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE
Confidence 3566788999999999864 569999999999999997754 33567899999999999999999999999999
Q ss_pred EEEecCCCCCceeeeec----------ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707 186 RIWKVSRKNPSVHKRVG----------SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 255 (347)
++|++..++........ .+|..... +.... ..--|...|-|+.|- |+++++-+-
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~----------fp~fs----t~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH----------FPDFS----TTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccc----------ccccc----ccccccchHHHHHHH--hhheeeccc
Confidence 99999865421111100 01110000 00000 111388899999886 578999999
Q ss_pred CCcEEEEeCCC-C-------------EEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcccCCccceeeehh
Q 043707 256 DKTLKVWRISD-C-------------KCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRELQGKGTKHFLAQ 318 (347)
Q Consensus 256 dg~i~vwdl~~-~-------------~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~~~~ 318 (347)
++.|..|.... . ..+..++.....|+-|.|.-|- +||.|...|.|.+||++..... ...
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~t 345 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCT 345 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCc
Confidence 99999998721 1 1234455556667777776553 8999999999999999865431 111
Q ss_pred hhh--ccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 319 VLL--KQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 319 ~~~--~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
++. .....|...+|+.|+..|+...+||+
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 222 22457999999999999999999985
No 145
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=5.1e-17 Score=134.22 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=148.9
Q ss_pred eEeee-eccccEEEEee--cCCEEEEecCCCcEEEEeCCCcce---ee-----ecCCCCeeEEEEeC--CCCEEEEEeCC
Q 043707 116 IGSIV-RKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFS---GF-----KSNSGLVKAIIITG--DSNKIFTGHQD 182 (347)
Q Consensus 116 i~~l~-~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~---~~-----~~h~~~V~~l~~sp--~~~~l~s~~~D 182 (347)
+..|. .+-+.|.|+.| +++.|++-. |..|.+|+..+... .+ ..+....++-+|+| +++.+++.+ |
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence 44454 45668888886 456777666 77899998653322 11 23556678889999 777777765 8
Q ss_pred CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEE
Q 043707 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKV 261 (347)
Q Consensus 183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~v 261 (347)
++++.||+++.+....... .|...|..+.|+|+ ..+|++|+.||.|+|
T Consensus 193 ~tl~~~D~RT~~~~~sI~d-------------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvri 241 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIED-------------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRI 241 (370)
T ss_pred CcEEEEEccchhhhcchhh-------------------------------hhcceeeeccCCCCceEEEEEcCCCccEEE
Confidence 8999999998765433332 38889999999997 567899999999999
Q ss_pred EeCCCC-EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCc--------------------c---ceee
Q 043707 262 WRISDC-KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGK--------------------G---TKHF 315 (347)
Q Consensus 262 wdl~~~-~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~--------------------~---~~~~ 315 (347)
||.|.. .++.++..|...|.++.|+|.. +|++|+.|..|.+|....-.. + ...-
T Consensus 242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred EeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 999865 5789999999999999999864 999999999999997642110 0 1112
Q ss_pred ehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707 316 LAQVLLKQENAITALAVNQES-AVVYCGSSDG 346 (347)
Q Consensus 316 ~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG 346 (347)
.++++..|+..|.+++|+.-. -.+|+-+.||
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 344677899999999998744 5677778887
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3e-17 Score=146.57 Aligned_cols=194 Identities=18% Similarity=0.374 Sum_probs=145.9
Q ss_pred cceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC------------CcceeeecCCCCeeEEEEeCCCCEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIITGDSNKIFT 178 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s 178 (347)
..++.++++|+++|.|+.. +++.+++|+.||+|+.|++. .....+.+|.+.|+.+++++....|++
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 3478999999999999885 68899999999999999421 234578899999999999998889999
Q ss_pred EeCCCcEEEEecCCCCCce--eeeecccccccceEEec-------cCCC-e-EEEEeecceee--------eeecCCCee
Q 043707 179 GHQDGKIRIWKVSRKNPSV--HKRVGSLPTFKDYVKSS-------VNPK-N-YVEVRRNRNVL--------KIRHYDAVS 239 (347)
Q Consensus 179 ~~~Dg~I~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~-~-~~~~~~~~~~~--------~~~h~~~V~ 239 (347)
|+.||++|+|+.....+.. ...-...|...++..+. .... . +.......... .......+.
T Consensus 414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999988776511 11111222222222111 0000 0 00000001111 112234577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
.+.++|...+.+++..|+.|+++|..+++.+....+|...++++++.|.| +|++++.||.|++|.+.
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 88899999999999999999999999999999999999999999999998 99999999999999986
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=2.3e-17 Score=149.24 Aligned_cols=224 Identities=16% Similarity=0.200 Sum_probs=138.9
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEE
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vw 188 (347)
+.....|.+.|+.+.|- ...|++++.|.+|++||+... ...+.+|.+.|.+++|.| +...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 45566899999999975 348999999999999996532 334789999999999999 66789999999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCC-CeEEEEeecceeeeeecCCCeeE---EEEcCCCCEEEEEeC-CCcEEEEe
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNP-KNYVEVRRNRNVLKIRHYDAVSC---LSLNAEQGLLYSGSW-DKTLKVWR 263 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~---l~~~~~~~~l~s~s~-dg~i~vwd 263 (347)
|++-.......... ..+....+. ..-......+......+...|.. +.+..|...|++++. |+.|+|||
T Consensus 173 D~R~n~~d~~e~~~------~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD 246 (720)
T KOG0321|consen 173 DCRCNGVDALEEFD------NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD 246 (720)
T ss_pred EEeccchhhHHHHh------hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence 99865421111100 000000000 00000111111112234444433 444557788888887 99999999
Q ss_pred CCCCEEEEE--------EecC---CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc---------------------
Q 043707 264 ISDCKCLES--------INAH---DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK--------------------- 310 (347)
Q Consensus 264 l~~~~~~~~--------~~~h---~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~--------------------- 310 (347)
++...+... +..| .-.+.++.....| +|++.+.|+.|++|++.....
T Consensus 247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS 326 (720)
T KOG0321|consen 247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS 326 (720)
T ss_pred ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC
Confidence 987543222 2223 2235555554444 777777799999998875432
Q ss_pred --------------------cceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707 311 --------------------GTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD 345 (347)
Q Consensus 311 --------------------~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D 345 (347)
.........+.+|.-.|++++|.|.. .-+++|++|
T Consensus 327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 01122344566777778888887743 445666665
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.6e-17 Score=146.99 Aligned_cols=200 Identities=22% Similarity=0.394 Sum_probs=154.0
Q ss_pred eeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC----------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 118 SIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL----------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 118 ~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~----------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
++..|..-|.++.+ ....|++|+.||+|.+|++. +.+.+|.+|.++|.|+++.+++.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 66667777777665 45689999999999999862 3467899999999999999999999999999999
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
+.|++....-..-.. ....-...+.+|.+.|+.+++++....|++++.||+++.|+..
T Consensus 369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999886321100000 0000112344799999999999999999999999999999875
Q ss_pred CCEEEEEE---------------------------------------------ec-------CCCcEEEEEeCCCC-EEE
Q 043707 266 DCKCLESI---------------------------------------------NA-------HDDAINSVVAGFDS-LVF 292 (347)
Q Consensus 266 ~~~~~~~~---------------------------------------------~~-------h~~~v~~i~~~~~~-~l~ 292 (347)
...+ .+| .. -...++.+.++|.. +.+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 3322 000 00 01245667777775 889
Q ss_pred EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
++..|+.|+++|..++. ++....+|...|+++++.|+|.+|++++.||
T Consensus 506 ~~hed~~Ir~~dn~~~~------~l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGK------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred ecccCCceecccccccc------cchheeeccceecceeecCCCceEEeecCCc
Confidence 99999999999987543 6788889999999999999999999999997
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=2.2e-17 Score=149.26 Aligned_cols=185 Identities=15% Similarity=0.215 Sum_probs=142.4
Q ss_pred cCCEEEE--ecCCCcEEEEeCCCcce------eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707 132 SGDLLYT--GSDSKNIRVWKNLKEFS------GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG 202 (347)
Q Consensus 132 ~~~~l~t--g~~dg~I~vwd~~~~~~------~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~ 202 (347)
+.++++. .+..|.|-||++.+.-+ .-......|++++|.| |...|+.++.||.|++|.+..+.......
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-- 667 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-- 667 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence 3444443 35568999999664422 1122456899999999 88899999999999999998764321111
Q ss_pred ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281 (347)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~ 281 (347)
.....+..|.+.|+.+.|+|- ...|++++.|-+|++||+++++....+.+|.+.|.
T Consensus 668 -----------------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 668 -----------------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred -----------------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 112233369999999999994 67899999999999999999999999999999999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCCC
Q 043707 282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 282 ~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++|+|+| .+++.+.||+|+||..+.... +++.-.+. ...--.|.|.-+|++|++.|.|.
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQ-----PVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCC-----ccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999 999999999999999986543 33333222 23345688888999999988875
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-16 Score=140.13 Aligned_cols=185 Identities=12% Similarity=0.233 Sum_probs=151.2
Q ss_pred eeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeeecC-CCCeeEEEEeCCCC-EEEEEeCCCcEEEE
Q 043707 115 LIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFKSN-SGLVKAIIITGDSN-KIFTGHQDGKIRIW 188 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~~h-~~~V~~l~~sp~~~-~l~s~~~Dg~I~vw 188 (347)
.++.+++|+..|+++.++ ..+||+++..|.|.|..+... ...|..- ...|.-+.|+|..+ +|.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 456788999999999975 569999999999999985533 3344433 34566899999655 57788999999999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|+....+...... .|..+...|+|+|. ..+|++.+.|+.|.+||.+..
T Consensus 193 Dv~g~sp~~~~~~-------------------------------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 193 DVQGMSPIFHASE-------------------------------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eccCCCcccchhh-------------------------------hccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 9988765443322 38999999999995 668889999999999999987
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
+....+. .+.+...++|.++| +|++|...|.|..||++.... ++.++.+|...|++|+|-|.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-----Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA-----PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC-----CceEeeecccceeEEEeeecc
Confidence 7776665 56789999999999 888999999999999996554 888999999999999998764
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=6.2e-17 Score=145.49 Aligned_cols=226 Identities=14% Similarity=0.209 Sum_probs=158.4
Q ss_pred eeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC--EEEEEeC-------
Q 043707 115 LIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN--KIFTGHQ------- 181 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~------- 181 (347)
+-..+++|++.|.|++ +.|.+|++|+.||+|+||.+. +++..++ ..+.|.||+|+|.+. .||++-.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 3445778999999987 568899999999999999954 4455544 346899999998653 2333222
Q ss_pred -------------------------CCcEEEEe------cCCCCCc------eeeeecccccccceEEeccC---CCeEE
Q 043707 182 -------------------------DGKIRIWK------VSRKNPS------VHKRVGSLPTFKDYVKSSVN---PKNYV 221 (347)
Q Consensus 182 -------------------------Dg~I~vwd------~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~ 221 (347)
|+.+..|. ...+-.. ....+........+...... ...++
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 22334552 2322111 11111111122222222211 11222
Q ss_pred -EEeecceee-eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC
Q 043707 222 -EVRRNRNVL-KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298 (347)
Q Consensus 222 -~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg 298 (347)
++.....+. +....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..++.+|.| .|+.|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 222222222 2245677999999999999999884 689999999888787777777889999999987 899999999
Q ss_pred cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+..||+....+ +.+.+.-|...|++|+|++.-.++++|+.||+
T Consensus 630 k~~WfDldlssk-----Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 630 KMCWFDLDLSSK-----PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred eeEEEEcccCcc-----hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 999999987666 88999999999999999999999999999985
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.4e-16 Score=136.77 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=128.9
Q ss_pred CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707 152 KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230 (347)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
...-.+.+|+++|.+++|+| +.+.||+|+.|.+|.||++-.+...... ......
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-------------------------tepvv~ 126 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-------------------------TEPVVE 126 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-------------------------ccceEE
Confidence 44556789999999999999 7789999999999999999765321111 112344
Q ss_pred eeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 231 KIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 231 ~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
+.+|...|--++|+|. .+.|++++.|.+|.+|++.+++.+.++. |.+-|.++.|+.|| +|++.+.|..|+|||.+.+
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 5579999999999995 6789999999999999999999999988 99999999999998 9999999999999999865
Q ss_pred CccceeeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707 309 GKGTKHFLAQVLLKQEN-AITALAVNQESAVVYCGSS 344 (347)
Q Consensus 309 ~~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~ 344 (347)
. ++....+|.+ .-..+.|-.++. |++.|.
T Consensus 206 ~------~v~e~~~heG~k~~Raifl~~g~-i~tTGf 235 (472)
T KOG0303|consen 206 T------VVSEGVAHEGAKPARAIFLASGK-IFTTGF 235 (472)
T ss_pred c------EeeecccccCCCcceeEEeccCc-eeeecc
Confidence 4 4555567754 355667777887 555543
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=8.2e-17 Score=146.89 Aligned_cols=203 Identities=19% Similarity=0.280 Sum_probs=153.0
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCC-----cEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSK-----NIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIR 186 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg-----~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~ 186 (347)
++.|-+|.-+|+|++.+ ++++|+++... .|+||+.. .....+.+|+-.|+.|+|+||+++|++.+.|+++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 56777999999999865 88999997754 58999855 44557899999999999999999999999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
+|....... ....... ...|..-|....|+|++.+++|+|.|++++||....
T Consensus 598 l~~~~~~~~-~e~~fa~---------------------------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 598 LYEVQEDIK-DEFRFAC---------------------------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eeeeecccc-hhhhhcc---------------------------ccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 998854321 1111110 114899999999999999999999999999999987
Q ss_pred C--EEEEEE--ecCCCcEEEEEeCCC-----C-EEEEEeCCCcEEEEEcccCCc---cceeee---hhhhhccCCcEEEE
Q 043707 267 C--KCLESI--NAHDDAINSVVAGFD-----S-LVFTGSADGTVKVWRRELQGK---GTKHFL---AQVLLKQENAITAL 330 (347)
Q Consensus 267 ~--~~~~~~--~~h~~~v~~i~~~~~-----~-~l~s~~~dg~I~vwd~~~~~~---~~~~~~---~~~~~~h~~~V~~l 330 (347)
. +.+..+ ..+..+|+.+++.|- + .++.|-..|.|.+|......+ ...... ......|...|+.+
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl 729 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRL 729 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhee
Confidence 7 544442 357889999998762 2 778888999999998652111 011112 22234567789999
Q ss_pred EEccC----------CCEEEEecCCC
Q 043707 331 AVNQE----------SAVVYCGSSDG 346 (347)
Q Consensus 331 ~~~p~----------~~~l~sgs~DG 346 (347)
.|.|. ...|++|++|-
T Consensus 730 ~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 730 LWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred EeccccccccccccceeEEeeecccc
Confidence 99974 24568888874
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=8.4e-17 Score=145.61 Aligned_cols=184 Identities=13% Similarity=0.200 Sum_probs=136.7
Q ss_pred CCEEEEecCCCcEEEEeCCC--------cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707 133 GDLLYTGSDSKNIRVWKNLK--------EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~--------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
..+|+.+.+||.|.++|..+ .+..+..|..+|.++.|.|....|++++.|.++++||++..+....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------ 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------ 137 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence 34799999999999998432 2466788999999999999777899999999999999998753221
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCE---------------
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK--------------- 268 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~--------------- 268 (347)
.+.++|...|.+++|.+. ...+++|+.||.|.|||++-..
T Consensus 138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 123479999999999995 6789999999999999997321
Q ss_pred -----E-------EEEEecCCC----cEEEEEeCCCCEEEEEeC-CCcEEEEEcccCCccceeeehhhhhc--c---CCc
Q 043707 269 -----C-------LESINAHDD----AINSVVAGFDSLVFTGSA-DGTVKVWRRELQGKGTKHFLAQVLLK--Q---ENA 326 (347)
Q Consensus 269 -----~-------~~~~~~h~~----~v~~i~~~~~~~l~s~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~--h---~~~ 326 (347)
+ +..-+++.. .|+.+.|-.+..||+++. |+.|+|||++.........+.....- | .-.
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 0 111123333 355566766668998887 99999999997655444344333322 3 336
Q ss_pred EEEEEEccCCCEEEEecCCC
Q 043707 327 ITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 327 V~~l~~~p~~~~l~sgs~DG 346 (347)
++++.....|.+|.+.+.|+
T Consensus 274 ~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred eEEEEecCCCCeEEEEecCC
Confidence 78888888888887777786
No 155
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.72 E-value=4.6e-15 Score=138.21 Aligned_cols=236 Identities=16% Similarity=0.239 Sum_probs=169.7
Q ss_pred ccceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCE-EEEEeCCCcEE
Q 043707 112 CNGLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNK-IFTGHQDGKIR 186 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~Dg~I~ 186 (347)
.++++.+++++...|+++...+ +.++.|..+|+|.|+++ .+.+..|+...+.|+.+.|.-||+. +++|+..|.+.
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 4568999999999999999775 58999999999999995 4667777766799999999998875 66677779999
Q ss_pred EEecCCCCCceeeeecc---------cccccceEEeccC------------------------------------CCeEE
Q 043707 187 IWKVSRKNPSVHKRVGS---------LPTFKDYVKSSVN------------------------------------PKNYV 221 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------------------------------------~~~~~ 221 (347)
+||++.++......... ++...-++....+ ....+
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 99999876432221100 0000000000000 00000
Q ss_pred --------------------------------------------------------------------------EEeecc
Q 043707 222 --------------------------------------------------------------------------EVRRNR 227 (347)
Q Consensus 222 --------------------------------------------------------------------------~~~~~~ 227 (347)
..+..+
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 000000
Q ss_pred e----eeeeecC------CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEE
Q 043707 228 N----VLKIRHY------DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI---NAHDDAINSVVAGFDS-LVFT 293 (347)
Q Consensus 228 ~----~~~~~h~------~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s 293 (347)
. .....+. ..+++++.++-|++.+.|...|+|-+|++..|-...+| .+|+.+|+.++...-+ .+++
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 0 0001122 45788888999999999999999999999999998888 5899999999986544 8999
Q ss_pred EeCCCcEEEEEcccCCc-----------------------------------cceeeehhhhhccCCcEEEEEEccCCCE
Q 043707 294 GSADGTVKVWRRELQGK-----------------------------------GTKHFLAQVLLKQENAITALAVNQESAV 338 (347)
Q Consensus 294 ~~~dg~I~vwd~~~~~~-----------------------------------~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 338 (347)
++.+|.+++||...... ...+..++.+.+|...|++++|+|||++
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 99999999999874321 0112245667889999999999999999
Q ss_pred EEEecCCCC
Q 043707 339 VYCGSSDGL 347 (347)
Q Consensus 339 l~sgs~DG~ 347 (347)
|++++.|++
T Consensus 591 lisasmD~t 599 (910)
T KOG1539|consen 591 LISASMDST 599 (910)
T ss_pred EEEeecCCc
Confidence 999999985
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=2.7e-16 Score=130.05 Aligned_cols=193 Identities=12% Similarity=0.114 Sum_probs=147.0
Q ss_pred ccccEEEEeec---CCEEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCC-CEEEEEeCCCcEEEEecCC
Q 043707 122 KEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDS-NKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 122 h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~-~~l~s~~~Dg~I~vwd~~~ 192 (347)
+.+++++++|+ .+++.+.+-|.+..|||+... ...+..|...|.+|+|...+ +.|++.+.||.||++|++.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 45678889885 779999999999999997654 44677899999999999844 5799999999999999998
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCC-CcEEEEeCCCC-EE
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWD-KTLKVWRISDC-KC 269 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d-g~i~vwdl~~~-~~ 269 (347)
.+......-. | .-..+...++|+++ -+++++-..| ..|.|.|+|.. .+
T Consensus 229 leHSTIIYE~--p---------------------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 229 LEHSTIIYED--P---------------------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred cccceEEecC--C---------------------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 7532222111 0 02456778899884 6777776554 56999999865 57
Q ss_pred EEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc-CCCEEEEecC
Q 043707 270 LESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ-ESAVVYCGSS 344 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~l~sgs~ 344 (347)
+..++.|++.|+.|+|.|.. .|.+++.|.++-+||+....+....-+.-... ..+.|+.|.|++ ....|+.+..
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 89999999999999999975 99999999999999998654311111222222 467899999996 4578877754
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=9.2e-16 Score=139.68 Aligned_cols=238 Identities=16% Similarity=0.242 Sum_probs=157.3
Q ss_pred CCCCCCccccc------------ccceeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeE
Q 043707 101 PYSPNENLLSS------------CNGLIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKA 166 (347)
Q Consensus 101 ~~~p~~~~~~~------------~~~~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~ 166 (347)
.|.|+|..+.. .++++.++++|++.|+|+++ +|+++++|+.|+.|.+|...-+-..-..|...|.|
T Consensus 19 afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQC 98 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQC 98 (1081)
T ss_pred EECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeE
Confidence 67788764322 24588999999999999997 58999999999999999744322222346666666
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec------ccccccceEEeccCCCeEEEEeecceeeee----ecCC
Q 043707 167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG------SLPTFKDYVKSSVNPKNYVEVRRNRNVLKI----RHYD 236 (347)
Q Consensus 167 l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~ 236 (347)
+.|+|-...|++|+.. ..-+|....+.....+... .......+.....++..-+.-...+....+ +.+.
T Consensus 99 MsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 99 MSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNS 177 (1081)
T ss_pred eecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCC
Confidence 6666655566666543 3445555443322211111 011112222222222222222222222222 3678
Q ss_pred CeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707 237 AVSCLSLNAE-----QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 237 ~V~~l~~~~~-----~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~ 310 (347)
+|.+++|+|. ...+++..+..++.+|.+. |+.+..-+.-.-...|+.+.++| +++.|+.|+.+++|..+ +
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--G- 253 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD--G- 253 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec--C-
Confidence 8999999996 2578999999999999884 56555433333345678888887 99999999999999775 2
Q ss_pred cceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..+.++.....+|+.++..|+++.++.|+.|||
T Consensus 254 ----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 254 ----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred ----eEEeeccccceeEEEEEEccCCceEEEEEccCe
Confidence 245566667889999999999999999999997
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.6e-16 Score=130.84 Aligned_cols=179 Identities=15% Similarity=0.346 Sum_probs=139.1
Q ss_pred CEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707 134 DLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
..+|++...|.|++||..+ .+..|+++...+..++|.. ....+.+|+.||+||+||++...........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------- 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence 5788999999999999654 7889999999999999977 4668999999999999999987654433322
Q ss_pred eEEeccCCCeEEEEeecceeeeeecC-CCeeEEEEcCCCCEEEEEeC----CCcEEEEeCCCCEE-EEEE-ecCCCcEEE
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIRHY-DAVSCLSLNAEQGLLYSGSW----DKTLKVWRISDCKC-LESI-NAHDDAINS 282 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~----dg~i~vwdl~~~~~-~~~~-~~h~~~v~~ 282 (347)
++. .+..|++.+-.++++++|.. |-.+.+||+|..+. +..+ ..|.+.|++
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 233 45677777767788888764 67799999998776 5554 689999999
Q ss_pred EEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-CEEEEecCC
Q 043707 283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-AVVYCGSSD 345 (347)
Q Consensus 283 i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~D 345 (347)
|.|+|.. +|++|+.||.|.|||+..... .. .+.....|...|..+.|.-++ +.|.+-+.+
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E--eD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~ 233 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE--ED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHM 233 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcc--hh-hHHHhhcccceeeeeeeecCCcceEEEEEcc
Confidence 9999975 999999999999999974422 22 333445678889999999877 445554443
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=139.01 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=151.3
Q ss_pred eeccccEEEEee--cCCEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 120 VRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 120 ~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
....+.|++++. .++.++.|++||.++.++.... ...+.-.++.|.++.|+|++..|++|+.||.|++||+..+
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 334456877774 5779999999997777775433 2334445789999999999999999999999999999988
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~ 273 (347)
........+... +..+...-|+++.|-.+ ..|++|..-|+|++||...+..++.+
T Consensus 187 ~t~~~~~~~~d~------------------------l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 187 QTLHIITMQLDR------------------------LSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred ceEEEeeecccc------------------------cccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh
Confidence 644311111000 00012234667776644 57999999999999999999999999
Q ss_pred ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 274 NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 274 ~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
..|++.|.+++..+++ ++++++.|+.|.-|.....+. .+........|...|.+++..++ .|++||.|++
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 9999999999999885 999999999999998875543 24444555678889999999876 8999998864
No 160
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.4e-16 Score=136.50 Aligned_cols=186 Identities=19% Similarity=0.213 Sum_probs=134.7
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeec
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG 202 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~ 202 (347)
.+.++..+|..|++|+.||++|||+... .......|.+.|.++.|+|||+.|++-+.| ..+||+++++.........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 5667777889999999999999999553 345567789999999999999999999999 9999999998543322211
Q ss_pred ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---CE--EEEEeCCCcEEEEeCCCCE-----EEEE
Q 043707 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---GL--LYSGSWDKTLKVWRISDCK-----CLES 272 (347)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~--l~s~s~dg~i~vwdl~~~~-----~~~~ 272 (347)
........+.|..++ .+ ++....-+.|+.||+...+ ...+
T Consensus 227 ------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 227 ------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred ------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 122334455666554 22 2222334556666654322 1122
Q ss_pred EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 273 ~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.-.-...|.+++.+++| +++.|+.||.|-|++....+. ....-..|...|+.|.|+|+.+++++-+.|.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-----~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-----LQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-----eEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 22234469999999998 888999999999999975443 4445567999999999999999998877653
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=123.19 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=134.5
Q ss_pred EEeecCCEEEEecCCCcEEEEeCC------------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNL------------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
++++.+++|+.|..+|.|-+..+. ..+..+++|.++|+.++|..+ .|++|+ ||.|+-|..+....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhh
Confidence 567788999999999999999632 224456899999999999844 777777 59999998765432
Q ss_pred c-eeeeecc--cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707 196 S-VHKRVGS--LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272 (347)
Q Consensus 196 ~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~ 272 (347)
. ..+..-. .|...+ .-.--.|+.|.+.|..+-++.++.|+.++.||+++|+....
T Consensus 94 s~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 1 1111000 000000 00224588999999877777777899999999999999999
Q ss_pred EecCCCcEEEEEe-CCCCEEEEEeCCCcEEEEEcccCCccceee---ehhhhhcc-CCcEEEEEEccCCCEEEEecC
Q 043707 273 INAHDDAINSVVA-GFDSLVFTGSADGTVKVWRRELQGKGTKHF---LAQVLLKQ-ENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 273 ~~~h~~~v~~i~~-~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+++|.+.|.+++- +..+.+++|++||++||||+++++...... -...+..| ..+|-+++.+ ..+|++|+-
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG 226 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG 226 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC
Confidence 9999999999987 445699999999999999999765411111 12233334 3467777764 567777653
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-16 Score=137.34 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=143.6
Q ss_pred CCEEEEecCCCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
..++++|+..+.|+|||+... .+.+++|+..|+++.++....+|++++..|.|.|-.+.++........
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--------- 161 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--------- 161 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---------
Confidence 468999999999999997633 567789999999999999888999999999999999988764332221
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCC
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFD 288 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~ 288 (347)
.....|+-+.+++.. .+|.+++.+|.+.+||+....++..+ +.|..+...|+|+|.
T Consensus 162 ----------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 162 ----------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred ----------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 134556789999965 46777899999999999888777665 689999999999997
Q ss_pred C--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 289 S--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 289 ~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
. +|++.+.|..|.+||.+... .... .....+...|+|.++|-+|++|...|
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~------s~~~-l~y~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQA------STDR-LTYSHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred ccceEEEecccceEEEeeccccc------ccce-eeecCCcceeeecCCceEEEeecCCc
Confidence 6 89999999999999998432 1222 23456899999999999999998876
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.8e-15 Score=125.04 Aligned_cols=161 Identities=13% Similarity=0.200 Sum_probs=123.0
Q ss_pred ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707 158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237 (347)
Q Consensus 158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 237 (347)
.+|...|.++.|.+.|+.+++|+.|++|+|||.+........ ...+..|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~----------------------------Ts~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC----------------------------TSSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE----------------------------eeeEEecCCc
Confidence 468899999999999999999999999999998655322111 1123359999
Q ss_pred eeEEEEcC--CCCEEEEEeCCCcEEEEeCC---------CCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEE
Q 043707 238 VSCLSLNA--EQGLLYSGSWDKTLKVWRIS---------DCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVW 303 (347)
Q Consensus 238 V~~l~~~~--~~~~l~s~s~dg~i~vwdl~---------~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vw 303 (347)
|..+.|.+ -|+.+++++.|+++.||.-. ......++......|+.|.|.|.. .+|+++.||.||||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999976 38999999999999999852 223455666677889999999974 89999999999999
Q ss_pred EcccCCc-------------------------------------------------------------cceeeehhhhhc
Q 043707 304 RRELQGK-------------------------------------------------------------GTKHFLAQVLLK 322 (347)
Q Consensus 304 d~~~~~~-------------------------------------------------------------~~~~~~~~~~~~ 322 (347)
+...... ..+...+..+.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 8752211 112333445667
Q ss_pred cCCcEEEEEEccCC----CEEEEecCCC
Q 043707 323 QENAITALAVNQES----AVVYCGSSDG 346 (347)
Q Consensus 323 h~~~V~~l~~~p~~----~~l~sgs~DG 346 (347)
|..+|++|+|.|+- .+||+++.||
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc
Confidence 88888999998863 5788888887
No 164
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=2.7e-14 Score=126.29 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=136.2
Q ss_pred eeEeeeecccc-EEEEeecCCEE-EEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEE-eCCCcEEEEe
Q 043707 115 LIGSIVRKEGH-IYSLAASGDLL-YTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTG-HQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~l~~h~~~-V~~l~~~~~~l-~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg~I~vwd 189 (347)
.+..+..+... -.++.++++.+ ++++.++.|++||... ....+..+. .+..++|+|+++.++++ ..|+.|++||
T Consensus 23 ~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 23 VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 34455444332 13444567765 6778899999999653 233344433 35688999999877654 5689999999
Q ss_pred cCCCCCceeeeecc-------cccccceEEeccCCCeE--EEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 043707 190 VSRKNPSVHKRVGS-------LPTFKDYVKSSVNPKNY--VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTL 259 (347)
Q Consensus 190 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i 259 (347)
+++.+......... .+....++....+.... +................+.+++|++++.+|+.+ ..++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 102 IETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEE
Confidence 98765332222111 11122222222222111 122111121122234456789999999988655 469999
Q ss_pred EEEeCCCCEEEEEEecCCC-------cEEEEEeCCCC-E-EEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707 260 KVWRISDCKCLESINAHDD-------AINSVVAGFDS-L-VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 260 ~vwdl~~~~~~~~~~~h~~-------~v~~i~~~~~~-~-l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l 330 (347)
++||+++++.+..+..+.. ....+.|+|++ + +++.+.++.|.+||++.... ...+ .+...+.++
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~------~~~~-~~~~~~~~~ 254 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV------LDYL-LVGQRVWQL 254 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE------EEEE-EeCCCcceE
Confidence 9999999988777653321 23467899988 4 34455677899999974332 1111 234578999
Q ss_pred EEccCCCEEEEec-CCC
Q 043707 331 AVNQESAVVYCGS-SDG 346 (347)
Q Consensus 331 ~~~p~~~~l~sgs-~DG 346 (347)
+|+|++++|++++ .+|
T Consensus 255 ~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSN 271 (300)
T ss_pred EECCCCCEEEEEcCCCC
Confidence 9999999998864 454
No 165
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=2.6e-15 Score=125.84 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=154.1
Q ss_pred eeeccccEEEEeec--CCEEEEecCCCcEEEEeC-----CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 119 IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKN-----LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 119 l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~-----~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
+..-..+|+|.+|+ +..+|.+..+..|.||.. -+...++..|...|++|.|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345689999985 558999999999999973 35577889999999999999999999999999999999985
Q ss_pred CCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE-
Q 043707 192 RKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL- 270 (347)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~- 270 (347)
.+..- .....+.+++..++|+.|+|.++.+++|+..+.|-||-++...--
T Consensus 86 ~~~~W-----------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 86 SGGTW-----------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred CCCee-----------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 43210 011223468999999999999999999999999999988654321
Q ss_pred ---EEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccce------------eeehhhhhccCCcEEEEEEcc
Q 043707 271 ---ESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK------------HFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 271 ---~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~------------~~~~~~~~~h~~~V~~l~~~p 334 (347)
+.-+.+...|.++.|+|++ +|++|+.|+..+||..-..+..++ ..+...+....+.|..+.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 2234567889999999999 888999999999997653221100 112223334567899999999
Q ss_pred CCCEEEEecCCCC
Q 043707 335 ESAVVYCGSSDGL 347 (347)
Q Consensus 335 ~~~~l~sgs~DG~ 347 (347)
+|..|+-.+.|++
T Consensus 217 sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 217 SGNRLAWVGHDST 229 (361)
T ss_pred CCCEeeEecCCCc
Confidence 9999998888864
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=1.6e-15 Score=125.80 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=131.1
Q ss_pred ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707 154 FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI 232 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (347)
......|.+.|+.+.+.+ +|+++++|+.||.|.|||++..........- ..... .-......
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c---------------~v~~~h~~ 98 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKC---------------IVAKQHEN 98 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheee---------------eccccCCc
Confidence 334467899999999998 8999999999999999999865411100000 00000 00111122
Q ss_pred ecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC----EEEEEeCCCcEEEEEccc
Q 043707 233 RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS----LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 233 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~ 307 (347)
+|...|..+.|-| |...+.+++.|.+++|||..+.+....|+ -++.|.+-+++|-. ++|+|..|-+|++.|+..
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 5888999999999 67788889999999999999999888887 45678888888843 888999999999999985
Q ss_pred CCccceeeehhhhhccCCcEEEEEEccCCC-EEEEecCCCC
Q 043707 308 QGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGSSDGL 347 (347)
Q Consensus 308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs~DG~ 347 (347)
+. ..+.+.+|...|.+|.|+|... .|++|+.||.
T Consensus 178 Gs------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 178 GS------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred Cc------ceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 54 6889999999999999999775 5788999984
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.5e-16 Score=130.43 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=124.1
Q ss_pred cceeEeeeeccccEEEEee----cCCEEEEecCCCcEEEEeCCC----cceeeecCC-CCeeEEEEeCCCCEEEEEe---
Q 043707 113 NGLIGSIVRKEGHIYSLAA----SGDLLYTGSDSKNIRVWKNLK----EFSGFKSNS-GLVKAIIITGDSNKIFTGH--- 180 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~----~~~~l~tg~~dg~I~vwd~~~----~~~~~~~h~-~~V~~l~~sp~~~~l~s~~--- 180 (347)
.+++..+++|.+.+..+.+ .+..+.+|+.||+|++||+.. ....+..|. .+-.|++....++.+++|.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 3467778888887777765 356999999999999999542 233445555 4667777776777888875
Q ss_pred -CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCc
Q 043707 181 -QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKT 258 (347)
Q Consensus 181 -~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~ 258 (347)
.|-.|.+||++..++....... .|.+.|+++.|+|. .++|++|+.||.
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~e------------------------------SH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNE------------------------------SHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred cCceEEEEEEeccccchhhhhhh------------------------------hccCcceeEEecCCCCCeEEeecccce
Confidence 4667999999988653221111 49999999999994 789999999999
Q ss_pred EEEEeCCCCE---EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707 259 LKVWRISDCK---CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 259 i~vwdl~~~~---~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~ 307 (347)
+.|+|++... .+...-.|...|.++.|..++ .|.+-+...+..+|+++.
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 9999997542 233333467778899998877 788888899999998874
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.3e-15 Score=136.57 Aligned_cols=221 Identities=18% Similarity=0.176 Sum_probs=156.2
Q ss_pred cccEEEEee---cCCEEEEecCCCcEEEEeCCCcce--------eeecCCCCeeEEEEeCCC--CEEEEEeCCCcEEEEe
Q 043707 123 EGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKEFS--------GFKSNSGLVKAIIITGDS--NKIFTGHQDGKIRIWK 189 (347)
Q Consensus 123 ~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~~~--------~~~~h~~~V~~l~~sp~~--~~l~s~~~Dg~I~vwd 189 (347)
...|+|+.+ ++.+|+.|..+|.|.+||+..... ....|..+|..+.|..+. ..|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 346777775 578999999999999999654322 233588999999997744 4599999999999998
Q ss_pred cCCCCCceee--------------------eecccccccceEEeccCCCeEEEEee-cc----------eeeeeecCCCe
Q 043707 190 VSRKNPSVHK--------------------RVGSLPTFKDYVKSSVNPKNYVEVRR-NR----------NVLKIRHYDAV 238 (347)
Q Consensus 190 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~h~~~V 238 (347)
++.-...... .+...+.....+..+...+.+....+ +. ......|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 8764331110 11111222222333333333333111 11 11234588999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCC-CCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceee
Q 043707 239 SCLSLNAEQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHF 315 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~-~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~ 315 (347)
+++.++|-+..++..+.|.+++||... ...++..+..+...|.+++|+|-. .|+++..||.|.+||+..... .
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----~ 477 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----E 477 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----C
Confidence 999999976655555559999999988 778888888888889999999976 899999999999999985433 2
Q ss_pred ehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 316 LAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+......+....+.+.|+++|+.|++|...|.
T Consensus 478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGT 509 (555)
T ss_pred CcccccccccccceeecCCCCcEEEEecCCCc
Confidence 34444444667788889999999999998873
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=134.15 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=135.9
Q ss_pred CEEEEecCCCcEEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC-------ceeeeecccc
Q 043707 134 DLLYTGSDSKNIRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP-------SVHKRVGSLP 205 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~-------~~~~~~~~~~ 205 (347)
+.|+.++.||.+.|.+ ..+.-+....|.++|.+-.|+|+|.-|+++++||.|++|.-...-. .....+...|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 3677778888888886 3444556778888888889999988899999999999996543210 1111112222
Q ss_pred cccceEEeccCCCeEEEEe-ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEE
Q 043707 206 TFKDYVKSSVNPKNYVEVR-RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~ 284 (347)
....++.+......+-.+. ......+..|.+-|.|+.|++..+++++|+.|-..+|||- .|..+..-..|+-+|++++
T Consensus 156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeee
Confidence 2222222221111111111 1233456689999999999999999999999999999995 6788888889999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 285 ~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
|.|+..++.++. +++++= ....+.|..++|++||..+++|...|
T Consensus 235 ~npd~~~~v~S~-nt~R~~-----------------~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 235 FNPEKDYLLWSY-NTARFS-----------------SPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eccccceeeeee-eeeeec-----------------CCCccceEEEEEcCCCceeeccccCc
Confidence 999976665543 344411 12356899999999999999998776
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=3.2e-15 Score=125.53 Aligned_cols=180 Identities=18% Similarity=0.345 Sum_probs=139.9
Q ss_pred EEEeecCCEEEEecCCCcEEEEeCCCc----------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCC
Q 043707 127 YSLAASGDLLYTGSDSKNIRVWKNLKE----------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 127 ~~l~~~~~~l~tg~~dg~I~vwd~~~~----------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
.++.++|..|++|.. ..|+++|+.+. .+.-.+..+.|.|++|+| +...++.|+....+-|+.-..+.+
T Consensus 164 L~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p 242 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP 242 (406)
T ss_pred EEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence 445567999988875 58999996432 111234467899999999 556899999999988888776654
Q ss_pred ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-EEEEEE
Q 043707 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDC-KCLESI 273 (347)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~-~~~~~~ 273 (347)
.... .+|.+.|+.++|.++|+.|++|+. |-.|.+||+|.. .++..+
T Consensus 243 l~ll--------------------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 243 LQLL--------------------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeee--------------------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 3222 259999999999999999999987 778999999865 567777
Q ss_pred ecCCC-cEEEEEeC--CCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 274 NAHDD-AINSVVAG--FDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 274 ~~h~~-~v~~i~~~--~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
..|.+ .-..|.|. |++ +|++|+.||.|++||+...+. .+..+..|...|+.++++|--.++++++-
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-----~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-----EVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----cccccccccccccceecCcccceeeeccC
Confidence 77765 45566664 455 888999999999999986554 56677788899999999999888888764
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=5e-15 Score=121.11 Aligned_cols=225 Identities=12% Similarity=0.180 Sum_probs=150.2
Q ss_pred eEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCC--Ccceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 116 IGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
...+++|.+.|+++.+. .++|++|...|.|++|+.. +....++ .+...|+.++..|+ ..+.+-+.|+.+.+|++.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 45677899999999986 4589999999999999854 4455666 56778999999997 488999999999999998
Q ss_pred CCCCceeeeecc-cccccceEEe------------ccCCCeEEEEeecc--eeee------eecCCCeeEEEEcCC-C--
Q 043707 192 RKNPSVHKRVGS-LPTFKDYVKS------------SVNPKNYVEVRRNR--NVLK------IRHYDAVSCLSLNAE-Q-- 247 (347)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~------~~h~~~V~~l~~~~~-~-- 247 (347)
.........+.. .-.+..+... ...+.......+.. ..+. ....+.+.|..+..+ +
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 754332221111 0011111100 00000001111110 0011 123455777765442 2
Q ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEE----------ecCCC---------------------------------------
Q 043707 248 GLLYSGSWDKTLKVWRISDCKCLESI----------NAHDD--------------------------------------- 278 (347)
Q Consensus 248 ~~l~s~s~dg~i~vwdl~~~~~~~~~----------~~h~~--------------------------------------- 278 (347)
-+|+.|-++|.+.+||+.++..+..| ..|..
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 35677888999999999876322211 11222
Q ss_pred -------cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 279 -------AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 279 -------~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.|..+.+-||+ .+|+++.|++||||..++.. ++..+..|...|++++|+|+...+|++|.|+.
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~------pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN------PLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC------chhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 24445566776 78999999999999998554 78899999999999999999999999999973
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=124.48 Aligned_cols=156 Identities=20% Similarity=0.369 Sum_probs=124.5
Q ss_pred ccccEEEEeec---CC--EEEEecCCCcEEEEeCCCc------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707 122 KEGHIYSLAAS---GD--LLYTGSDSKNIRVWKNLKE------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184 (347)
Q Consensus 122 h~~~V~~l~~~---~~--~l~tg~~dg~I~vwd~~~~------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 184 (347)
..+.++|..+. +. +|++|.++|.|.+||.... ......|..+|.++.+.+....=++|+.+.+
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 45678888853 33 7889999999999995542 2334578999999999986666788888999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
+..|.+........... ...+ ..-.|..+..-||++.++++++|++|+||..
T Consensus 229 l~~~Sl~~s~gslq~~~---------------------------e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRK---------------------------EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred ceeeeeccccCcccccc---------------------------eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence 99998875421111100 0001 2335778899999999999999999999999
Q ss_pred CCCEEEEEEecCCCcEEEEEeCCC-CEEEEEeCCCcEEEEEc
Q 043707 265 SDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRR 305 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~ 305 (347)
++..++..++.|.+.|++++|+|+ +++|+++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999 69999999999999986
No 173
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=5.5e-15 Score=131.63 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=133.9
Q ss_pred EEEEecCCCcEEEEeCCC-ccee-----eecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccc
Q 043707 135 LLYTGSDSKNIRVWKNLK-EFSG-----FKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTF 207 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~-~~~~-----~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 207 (347)
-|+.|-..|.|.+.|... .+.. ..-.+..|+|+.|-| +...|+.+..+|.+.++|..............++..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 567777788888887432 1111 112347899999999 556888899999999998743211111111111111
Q ss_pred cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC
Q 043707 208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF 287 (347)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~ 287 (347)
..+....... ...+.....+.--.+.|...+|+|||++|++.+.||.++|+|..+.+.+..++..-+...|++|+|
T Consensus 267 ~~f~i~t~ks----k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 267 DQFAILTSKS----KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred CeeEEeeeec----cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 1111000000 000122223333556899999999999999999999999999999999888888889999999999
Q ss_pred CC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 288 DS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 288 ~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
|| +|++|++|.-|.||.+... ..+..-++|..+|..|+|.|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~er------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEER------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence 99 9999999999999999732 26777789999999999996
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.63 E-value=2e-15 Score=130.12 Aligned_cols=156 Identities=26% Similarity=0.350 Sum_probs=127.4
Q ss_pred CCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCcee-eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 161 SGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 161 ~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
..+|..+.|.++.. .|+||+.|..|++|.+........ ..+.. ...+.+|...|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y------------------------~s~Ls~H~~aV 68 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY------------------------LSSLSRHTRAV 68 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE------------------------eecccCCccee
Confidence 36899999998665 999999999999999987653221 11110 01122599999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEE
Q 043707 239 SCLSLNAEQGLLYSGSWDKTLKVWRIS--------D--------CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVK 301 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~--------~--------~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~ 301 (347)
+++.|+|+|.+|++|+.+|.+.+|-.. + ....+.+.+|...|..++|+|++ ++++++.|+.++
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence 999999999999999999999999765 2 23456677899999999999998 888999999999
Q ss_pred EEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 302 VWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 302 vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+||+..+. +...+..|..-|..++|.|.++++++=+.|.
T Consensus 149 l~Dv~~G~------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 149 LWDVHAGQ------LLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred EEEeccce------eEeeccccccccceeecchhhhhhhhhccCc
Confidence 99998543 6888899999999999999999999877764
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=126.98 Aligned_cols=218 Identities=14% Similarity=0.239 Sum_probs=155.3
Q ss_pred CCCCCCCCCCCCCCCc-ccccc--cc-------------eeEeeeeccc---cEEEEeecCCEEEEecCCCcEEEEeCC-
Q 043707 92 YTKSPWLMPPYSPNEN-LLSSC--NG-------------LIGSIVRKEG---HIYSLAASGDLLYTGSDSKNIRVWKNL- 151 (347)
Q Consensus 92 ~~~~~~~~~~~~p~~~-~~~~~--~~-------------~i~~l~~h~~---~V~~l~~~~~~l~tg~~dg~I~vwd~~- 151 (347)
..+.|.....|.|+|. .+... .+ .++.+.+++. +-+.+++++++|+..+..|.|.|....
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 4467777778899887 32221 11 2333334442 234566789999999999999999733
Q ss_pred -CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707 152 -KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230 (347)
Q Consensus 152 -~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
+.+..++ -.+.|.+++|+.+++.|+.++.+|.|.+||++.........
T Consensus 335 ~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~------------------------------ 383 (514)
T KOG2055|consen 335 KELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV------------------------------ 383 (514)
T ss_pred hhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe------------------------------
Confidence 3344443 45789999999999999999999999999999874332221
Q ss_pred eeecCCCe--eEEEEcCCCCEEEEEeCCCcEEEEeCCC------CEEEEEEecCCCcEEEEEeCCCC-EEEEEe--CCCc
Q 043707 231 KIRHYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISD------CKCLESINAHDDAINSVVAGFDS-LVFTGS--ADGT 299 (347)
Q Consensus 231 ~~~h~~~V--~~l~~~~~~~~l~s~s~dg~i~vwdl~~------~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~--~dg~ 299 (347)
..+.| +.++.++++.+|++|+..|.|.|||..+ .+++..+..-...|+++.|++|. +||.++ .+..
T Consensus 384 ---D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 384 ---DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred ---ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 12222 4567778899999999999999999753 46777777677889999999998 555554 5788
Q ss_pred EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+++-.+..... ... .......-+.|+||+|+|.+.+||.|..+|
T Consensus 461 lrLVHvPS~TV-FsN--fP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 461 LRLVHVPSCTV-FSN--FPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred eEEEeccceee-ecc--CCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 99888863221 001 111123345799999999999999999887
No 176
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.62 E-value=1.1e-13 Score=122.50 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=121.4
Q ss_pred CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
++++++++.|+.|++||.. +....+..+ ..+.+++|+|+++.+ ++++.++.|++||..+++......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence 3578899999999999964 445566554 346789999999876 567788999999998765321110
Q ss_pred eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~ 288 (347)
....+..++|+|+++.++++ ..|+.|++||+++.+.+..+..+ ..+..++|+|+
T Consensus 71 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~d 125 (300)
T TIGR03866 71 ------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPD 125 (300)
T ss_pred ------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCC
Confidence 11234678999999877655 56899999999998888877633 34678999999
Q ss_pred C-EEEEEeCCC-cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec-CCC
Q 043707 289 S-LVFTGSADG-TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS-SDG 346 (347)
Q Consensus 289 ~-~l~s~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs-~DG 346 (347)
+ +++++..++ .+.+||.+.... .... .....+..++|+|++++|+.++ .||
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEI------VDNV-LVDQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeE------EEEE-EcCCCccEEEECCCCCEEEEEcCCCC
Confidence 8 666666654 577788864321 1111 1223457899999999886554 354
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=120.32 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=142.3
Q ss_pred eccccEEEEeec-------CCEEEEecCCCcEEEEeCCCc---c--------eeeecCCCCeeEEEEeC-CCCEEEEEeC
Q 043707 121 RKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLKE---F--------SGFKSNSGLVKAIIITG-DSNKIFTGHQ 181 (347)
Q Consensus 121 ~h~~~V~~l~~~-------~~~l~tg~~dg~I~vwd~~~~---~--------~~~~~h~~~V~~l~~sp-~~~~l~s~~~ 181 (347)
.|.-+++.+.|. .++|||.++ .+|+|....+ + ..-..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 466667777653 346777653 7999985421 0 01223567899999988 8889999999
Q ss_pred CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEE
Q 043707 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLK 260 (347)
Q Consensus 182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~ 260 (347)
|-+..|||++++.... -+..++.|...|..++|...+ ..+++.+.||.++
T Consensus 172 DTTCTiWdie~~~~~~-----------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGT-----------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred cCeEEEEEEeeccccc-----------------------------eeeEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence 9999999999873210 112344699999999999854 5889999999999
Q ss_pred EEeCCCCEEEEEE---ecCCCcEEEEEeCCCC--EEEEEeC-CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 261 VWRISDCKCLESI---NAHDDAINSVVAGFDS--LVFTGSA-DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 261 vwdl~~~~~~~~~---~~h~~~v~~i~~~~~~--~l~s~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
++|+|..+.-..+ .....+...++|++.. ++|+-.. ...|.|-|++.... ++..+.+|.+.|++|+|.|
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-----pva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-----PVARLRNHQASVNGIAWAP 297 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-----ceehhhcCcccccceEecC
Confidence 9999986543332 2225678889998865 7776554 46899999996654 7889999999999999999
Q ss_pred CC-CEEEEecCCC
Q 043707 335 ES-AVVYCGSSDG 346 (347)
Q Consensus 335 ~~-~~l~sgs~DG 346 (347)
.. ..|++||.|-
T Consensus 298 hS~~hictaGDD~ 310 (364)
T KOG0290|consen 298 HSSSHICTAGDDC 310 (364)
T ss_pred CCCceeeecCCcc
Confidence 65 7888888873
No 178
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=121.30 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=112.6
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL 243 (347)
Q Consensus 164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 243 (347)
-.|+.|++.|.+|+.|+.||.|.|||+.+....... .+|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--------------------------------saH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--------------------------------SAHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--------------------------------hccccceeEEEe
Confidence 789999999999999999999999999987632211 159999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE----------------------------------------
Q 043707 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV---------------------------------------- 283 (347)
Q Consensus 244 ~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i---------------------------------------- 283 (347)
+++|+.|++++.|..|++||+..|.+++.+.. ..+|+.+
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 99999999999999999999999887776542 1111111
Q ss_pred -------EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC-CcEEEEEEccCCCEEEEecCCCC
Q 043707 284 -------VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE-NAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 284 -------~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.|.+.| ++++|...|.+.|+|..+.+ ++..+.... ..|..+.|+..|++|+.-+.|.+
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNtsDRv 219 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTSDRV 219 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecCCce
Confidence 133333 78899999999999988553 333333333 68999999999999999888853
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.62 E-value=2.5e-14 Score=120.15 Aligned_cols=185 Identities=15% Similarity=0.311 Sum_probs=138.4
Q ss_pred cCCEEEEecCCCcEEEEeCC--Ccceeee--cCCC---CeeEEEEeCCCCEEEEEeCCCcEEEEec-CCCCCceeeeecc
Q 043707 132 SGDLLYTGSDSKNIRVWKNL--KEFSGFK--SNSG---LVKAIIITGDSNKIFTGHQDGKIRIWKV-SRKNPSVHKRVGS 203 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~--~~~~~~~--~h~~---~V~~l~~sp~~~~l~s~~~Dg~I~vwd~-~~~~~~~~~~~~~ 203 (347)
+..++++.+.+.-|++||.. +....+. .|.. +-.+++|+|||.+|+.|- ...|+++|+ +.+..........
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 45699999999999999943 2222222 2332 456899999999998776 569999999 5554322111100
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~ 282 (347)
.-+.+..+-|.|++|+|. ...++.|+...++-||.-..++++..+.+|.+.|+.
T Consensus 201 -------------------------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 201 -------------------------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred -------------------------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 001235677999999995 569999999999999998899999999999999999
Q ss_pred EEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCC-cEEE--EEEccCCCEEEEecCCCC
Q 043707 283 VVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQEN-AITA--LAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 283 i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~-~V~~--l~~~p~~~~l~sgs~DG~ 347 (347)
+.|+++| .|++|. .|..|..||++.... ++..|..|.. .=.. ....|++++|++|+.||.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~ 320 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGS 320 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecCCCCceeeccCCCcc
Confidence 9999998 777776 488999999996544 6777777754 2233 445688999999999984
No 180
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.62 E-value=9.5e-15 Score=127.73 Aligned_cols=194 Identities=15% Similarity=0.223 Sum_probs=142.1
Q ss_pred eEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcc----eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 116 IGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEF----SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
+..+..|.++|.++.++ ...+++.+.||+|++-|+.+.+ .....-...+..+.|+.+...++.+..=|...+|
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 45566788999999975 4589999999999999976442 2233334567788898888888888888899999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|.++......... -|...|+.|+++|- ..+|++++.|++.+|||+|..
T Consensus 307 D~R~~~s~~~~~~-------------------------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 307 DLRTDGSEYENLR-------------------------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred EeecCCccchhhh-------------------------------hhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 9998764222111 27889999999995 568999999999999999865
Q ss_pred EE----EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC----C--cEEEEEEccCC
Q 043707 268 KC----LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE----N--AITALAVNQES 336 (347)
Q Consensus 268 ~~----~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~----~--~V~~l~~~p~~ 336 (347)
.. +...-.|...|.+..|+|.+ .|++.+.|..|+|||..--.. ...+... ..|. . .....+|.|+.
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa--~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA--KDEPLGT-IPHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc--cCCccce-eeccCcccccccchhheeCCCc
Confidence 32 23344699999999999986 899999999999999841110 1111111 1121 1 34456899999
Q ss_pred CEEEEec
Q 043707 337 AVVYCGS 343 (347)
Q Consensus 337 ~~l~sgs 343 (347)
.++++|-
T Consensus 433 ~li~vg~ 439 (498)
T KOG4328|consen 433 NLIVVGR 439 (498)
T ss_pred cEEEEec
Confidence 9988875
No 181
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=129.48 Aligned_cols=131 Identities=15% Similarity=0.296 Sum_probs=105.9
Q ss_pred ccEEEEee---cCCEEEEecCCCcEEEEeCC-------------C-----------------cceeeecCCCCeeEEEEe
Q 043707 124 GHIYSLAA---SGDLLYTGSDSKNIRVWKNL-------------K-----------------EFSGFKSNSGLVKAIIIT 170 (347)
Q Consensus 124 ~~V~~l~~---~~~~l~tg~~dg~I~vwd~~-------------~-----------------~~~~~~~h~~~V~~l~~s 170 (347)
..|+|+.| +..+++.+-.+|.+++||.. + .+..+.--.+.|..++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 56889987 34577788889999999621 0 011122234578899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL 250 (347)
Q Consensus 171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 250 (347)
|||++||+.++||.+||+|..+.+....+. ...+...|++|+|||++|
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------------------------SYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------------------------SYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHH--------------------------------hhccceEEEEEcCCccEE
Confidence 999999999999999999998875432221 145678999999999999
Q ss_pred EEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707 251 YSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (347)
Q Consensus 251 ~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~ 286 (347)
++|++|--|.||.+...+.+..=++|+.+|+.|+|.
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999999999997
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.9e-15 Score=132.29 Aligned_cols=171 Identities=16% Similarity=0.242 Sum_probs=128.3
Q ss_pred ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--Cc-ceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEE
Q 043707 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KE-FSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIR 186 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~-~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~ 186 (347)
++-+.|.+|+|-|.|++|+ |.+|++|++|-.+.|||.. +. ...-.+|..-|.+++|-| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4566788999999999985 8899999999999999954 22 334568999999999999 567899999999999
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~ 265 (347)
++|+...+....-.-.. .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++
T Consensus 121 lfdl~~~~~~~~d~~~~----------------------~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGME----------------------ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EEecccccccccccCcc----------------------chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 99998643211100000 0011123488999999999987 889999999999999998
Q ss_pred CCEE-EE---------EEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707 266 DCKC-LE---------SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 266 ~~~~-~~---------~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~ 306 (347)
.... -. .+...--...|+..+|.. +|++|+.|--.++||++
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 7421 11 111112245688888875 99999999999999955
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=111.54 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=127.9
Q ss_pred eEeeeeccccEEEEeecCCEEEEecCCCcEEEEeCCCcce--------e--eecCC-----CCeeEEEEeCCCCEEEEEe
Q 043707 116 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS--------G--FKSNS-----GLVKAIIITGDSNKIFTGH 180 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~--------~--~~~h~-----~~V~~l~~sp~~~~l~s~~ 180 (347)
+-..++|+++|+.+.+..++|++|+. |.|+-|...+... . ..-|. ..|+++...|..+-++.++
T Consensus 55 iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred eeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence 44558999999999999999999885 9999997432211 1 11122 3689999999777777778
Q ss_pred CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 181 QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 181 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
.|+.++-||+++++.... ..+|.+.|.++..-.....+++|+.||+++
T Consensus 134 GD~~~y~~dlE~G~i~r~--------------------------------~rGHtDYvH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQRE--------------------------------YRGHTDYVHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred CCeEEEEEEecCCEEEEE--------------------------------EcCCcceeeeeeecccCcceeecCCCccEE
Confidence 999999999999863322 236999999999866677899999999999
Q ss_pred EEeCCCCEEEEEEecC----------CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707 261 VWRISDCKCLESINAH----------DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h----------~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l 330 (347)
|||+++++++..+... ...|-+++.+ ..++++ +....+.+|+++.... ... ..-...|..+
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvC-GgGp~lslwhLrsse~------t~v-fpipa~v~~v 252 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVC-GGGPKLSLWHLRSSES------TCV-FPIPARVHLV 252 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEe-cCCCceeEEeccCCCc------eEE-EecccceeEe
Confidence 9999999998887533 2346666654 235544 4566899999985432 111 1123456667
Q ss_pred EEcc
Q 043707 331 AVNQ 334 (347)
Q Consensus 331 ~~~p 334 (347)
.|..
T Consensus 253 ~F~~ 256 (325)
T KOG0649|consen 253 DFVD 256 (325)
T ss_pred eeec
Confidence 7754
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.7e-14 Score=130.01 Aligned_cols=199 Identities=21% Similarity=0.282 Sum_probs=160.2
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecC---CCcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSD---SKNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~---dg~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
+.....|...|..+.|. |+||++... ...|.|.++.+. ...|+...+.|.++.|+|...+|+.+++ ..||||
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 56667899999999986 779998754 357888886543 3456666788999999998889988885 589999
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC- 267 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~- 267 (347)
|+..+....... .....|..++.+|.|..|+.|+.|+.+..+|+.-.
T Consensus 593 dL~kqelvKkL~--------------------------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 593 DLSKQELVKKLL--------------------------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ehhHHHHHHHHh--------------------------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 998754322211 14567889999999999999999999999999744
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC---ccceeeehhhhhccCCc----EEEEEEccCCCEE
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG---KGTKHFLAQVLLKQENA----ITALAVNQESAVV 339 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~---~~~~~~~~~~~~~h~~~----V~~l~~~p~~~~l 339 (347)
++.++++.|...++.|+|++.- +|++|+.||++.||.-..-. +.....++..+.+|... |.++.|+|...+|
T Consensus 641 kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL 720 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL 720 (733)
T ss_pred chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceE
Confidence 6888999999999999999875 99999999999999654321 12345677888999665 9999999999999
Q ss_pred EEecCCCC
Q 043707 340 YCGSSDGL 347 (347)
Q Consensus 340 ~sgs~DG~ 347 (347)
++++.||+
T Consensus 721 fsAGAd~t 728 (733)
T KOG0650|consen 721 FSAGADGT 728 (733)
T ss_pred EecCCCce
Confidence 99999985
No 185
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.3e-12 Score=109.77 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=133.1
Q ss_pred CcEEEEeCCCc--ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC-CCceeeeecccccc---------cce
Q 043707 143 KNIRVWKNLKE--FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK-NPSVHKRVGSLPTF---------KDY 210 (347)
Q Consensus 143 g~I~vwd~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~-~~~~~~~~~~~~~~---------~~~ 210 (347)
.+|.|||..+. +..+ ....+|.++.+.++ .|++.- .++|.||...+. +..........|.. ..+
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 47999995433 3333 35689999999887 666655 679999998743 32222222222222 112
Q ss_pred EEeccCCC---eEEEEeecc---eeeeeecCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEec--CCCcEE
Q 043707 211 VKSSVNPK---NYVEVRRNR---NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-LKVWRISDCKCLESINA--HDDAIN 281 (347)
Q Consensus 211 ~~~~~~~~---~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~vwdl~~~~~~~~~~~--h~~~v~ 281 (347)
++...... .++.+.... ......|...|.|++++-+|.++|+++..|+ |+|||..+++.+..++. ....|.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 22221111 222222222 3566789999999999999999999999998 78999999999999973 245799
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcccCCccce--------e-eehhh---------hhccCCcEEEEEEccCCCEEEEe
Q 043707 282 SVVAGFDS-LVFTGSADGTVKVWRRELQGKGTK--------H-FLAQV---------LLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 282 ~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~--------~-~~~~~---------~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
+|+|+|+. +|++++..|+|.||.++....... . .+.+. +.-.++...-++|-.+.+.++..
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i 310 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAI 310 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEE
Confidence 99999997 999999999999999985432111 0 11111 11124466677887776666666
Q ss_pred cCCCC
Q 043707 343 SSDGL 347 (347)
Q Consensus 343 s~DG~ 347 (347)
+.||+
T Consensus 311 ~~Dgs 315 (346)
T KOG2111|consen 311 CADGS 315 (346)
T ss_pred EeCCc
Confidence 77774
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=1e-15 Score=142.49 Aligned_cols=218 Identities=15% Similarity=0.271 Sum_probs=139.0
Q ss_pred cceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 113 NGLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 113 ~~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+.++.|.+|...|+|..++ |.++++|++|..|+||... .++....+|.+.|+.++.+.+..++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34678889999999999886 7899999999999999744 5678899999999999999998899999999999999
Q ss_pred ecCCCCCceeeee--------cccccccceEEeccCCCeEEEEeecc--eeeee------ecCC----------------
Q 043707 189 KVSRKNPSVHKRV--------GSLPTFKDYVKSSVNPKNYVEVRRNR--NVLKI------RHYD---------------- 236 (347)
Q Consensus 189 d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~h~~---------------- 236 (347)
.+..+.++....- ...|.. .........++... ..... ...+
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9998875432221 111110 01111111111111 00000 0000
Q ss_pred ----------CeeEEEEcCCC-----------CEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEE
Q 043707 237 ----------AVSCLSLNAEQ-----------GLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFT 293 (347)
Q Consensus 237 ----------~V~~l~~~~~~-----------~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s 293 (347)
...+++|.... .+.+++-.+..+.+|++-++..++.+.+|...+..+.++|-. ...+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 01112222111 122222234445556665666666666778888888888865 5568
Q ss_pred EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
++.||...|||+-.+- +.+........+.+-+|+++|..++..
T Consensus 414 ag~dgst~iwdi~eg~------pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGI------PIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred ccCCCceEeeecccCC------cceeeecccceeeccccCCCCceEecC
Confidence 9999999999997433 222222224567788999998776654
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.8e-14 Score=120.80 Aligned_cols=191 Identities=13% Similarity=0.140 Sum_probs=141.2
Q ss_pred eEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCC--------Ccceeee-cCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707 116 IGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNL--------KEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGK 184 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~--------~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~ 184 (347)
.+.+.+|.|-|.++.++ +.+|++|+.|..++||... +.+.... .|..-|.|++|....+++++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34677899999999985 7799999999999999843 2233222 35689999999999999999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
|.+-|+++.+.+....-. ...+.|..+..+|..+.|++.+.++.+.+||.
T Consensus 129 VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred eEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEEec
Confidence 999999987633221100 12348999999999999999999999999999
Q ss_pred CCCE-EEEE--EecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhh------hccCCcEEEEEEc
Q 043707 265 SDCK-CLES--INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVL------LKQENAITALAVN 333 (347)
Q Consensus 265 ~~~~-~~~~--~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~------~~h~~~V~~l~~~ 333 (347)
+... ++.. +.........+.|+|.. +|++.+..+-+.|||++.... ++... ......-..+-|+
T Consensus 179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeC
Confidence 8765 2222 22344567888999986 899999999999999986543 11111 1111223567788
Q ss_pred cCCCEEEE
Q 043707 334 QESAVVYC 341 (347)
Q Consensus 334 p~~~~l~s 341 (347)
|+|..+.+
T Consensus 254 ~~G~Q~ms 261 (609)
T KOG4227|consen 254 PSGNQFMS 261 (609)
T ss_pred CCCCeehh
Confidence 88866543
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.57 E-value=1e-12 Score=120.44 Aligned_cols=194 Identities=27% Similarity=0.507 Sum_probs=147.6
Q ss_pred eeEeeeeccc-cEEEEee---cCC-EEEEe-cCCCcEEEEeCC---CcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCc
Q 043707 115 LIGSIVRKEG-HIYSLAA---SGD-LLYTG-SDSKNIRVWKNL---KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGK 184 (347)
Q Consensus 115 ~i~~l~~h~~-~V~~l~~---~~~-~l~tg-~~dg~I~vwd~~---~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~ 184 (347)
.+..+..+.. .+..+.. ++. +++.. ..|+.+++|+.. .....+..|...|.+++|+|++..+++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 3445544332 4444433 455 44544 449999999965 456778899999999999999998888886 999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWR 263 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwd 263 (347)
+++|++........ ...|...|.+++|+|++. .+++++.|+.|++||
T Consensus 180 ~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd 227 (466)
T COG2319 180 IKLWDLRTGKPLST--------------------------------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227 (466)
T ss_pred eEEEEcCCCceEEe--------------------------------eccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence 99999987332111 113889999999999987 555558999999999
Q ss_pred CCCCEEEE-EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 264 ISDCKCLE-SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 264 l~~~~~~~-~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
...++.+. .+..|.... ...|++++ ++++++.|+.+++|++..... ....+..|...|.++.|.|++..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 228 LSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEEEecCCccEEEEEECCCCCEEEE
Confidence 99888887 688888775 44789987 888999999999999985543 12222677889999999998888888
Q ss_pred ecCCC
Q 043707 342 GSSDG 346 (347)
Q Consensus 342 gs~DG 346 (347)
++.|+
T Consensus 302 ~~~d~ 306 (466)
T COG2319 302 GSSDG 306 (466)
T ss_pred eeCCC
Confidence 88774
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.55 E-value=1.6e-13 Score=125.31 Aligned_cols=209 Identities=13% Similarity=0.153 Sum_probs=143.2
Q ss_pred EEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce------ee
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV------HK 199 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~------~~ 199 (347)
|+.++|..|+.+..+ .+.+||.. ..++++++|...|+|++|+.+|+.|++|+.|..|.+|.-.-..... ..
T Consensus 19 afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ 97 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ 97 (1081)
T ss_pred EECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence 666788877666644 79999955 5588999999999999999999999999999999999865332111 11
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe---cC
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN---AH 276 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~---~h 276 (347)
.....|....+..+..+.-.++ ....+.+........|.+++|..||.+|+.|-.+|+|.|-+- ++++...+. +.
T Consensus 98 CMsFNP~~h~LasCsLsdFglW-S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~ 175 (1081)
T KOG1538|consen 98 CMSFNPITHQLASCSLSDFGLW-SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGS 175 (1081)
T ss_pred EeecCchHHHhhhcchhhcccc-ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCC
Confidence 1111122222222222221111 112222333334566888999999999999999999998864 444444443 45
Q ss_pred CCcEEEEEeCCCC------EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 277 DDAINSVVAGFDS------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 277 ~~~v~~i~~~~~~------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..+|.+|+|+|.. .+++.....++.++.+... .+..-..-.-...|+.+.++|.++..||.||
T Consensus 176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-------~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-------QIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred CCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------eecccccCCCCchhheeccCCcEEEEccCCC
Confidence 7789999999852 7888888999999988621 1222222233567999999999999999987
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=2.1e-12 Score=110.57 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=120.5
Q ss_pred cccEEEEeecCCEEEEecCCCcEEEEeCCC--ccee---eecCCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCC
Q 043707 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLK--EFSG---FKSNSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNP 195 (347)
Q Consensus 123 ~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~---~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~ 195 (347)
...|.++..+.++|+.+-++. |+|||+.. .+.+ ...+...+.++.+++++.+++-=+ ..|.|.|||+.+-+.
T Consensus 87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~ 165 (391)
T KOG2110|consen 87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP 165 (391)
T ss_pred CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence 346888888999998888764 99999653 3333 334555677777777777877533 468999999987654
Q ss_pred ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEe
Q 043707 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKT-LKVWRISDCKCLESIN 274 (347)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-i~vwdl~~~~~~~~~~ 274 (347)
..... .|.+.+.|++|+++|.+|++++..|+ |+|+.+.+|+.+.+|+
T Consensus 166 v~~I~--------------------------------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 166 VNTIN--------------------------------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeEEE--------------------------------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 33322 49999999999999999999999998 7899999999999997
Q ss_pred cC--CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 275 AH--DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 275 ~h--~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
.. -..|.+++|++++ +|++.+.-++|.||.++..
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 43 3457899999998 8888888999999999753
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.54 E-value=5.5e-12 Score=115.57 Aligned_cols=197 Identities=29% Similarity=0.493 Sum_probs=145.6
Q ss_pred ceeEeeeeccccEEEEee--cCCEEEEecC-CCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEE
Q 043707 114 GLIGSIVRKEGHIYSLAA--SGDLLYTGSD-SKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRI 187 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~--~~~~l~tg~~-dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~v 187 (347)
..+..+..|...|.++.+ ++.+++.++. |+.+++|+.. .....+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 566778889999987775 4667888885 9999999976 46777888999999999999987 5666699999999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
||...+..... ....|...+ ...|++++.++++++.|+.+++|+++..
T Consensus 226 wd~~~~~~~~~-------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 226 WDLSTGKLLRS-------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred EECCCCcEEee-------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 98774432211 111355554 3389999889999999999999999876
Q ss_pred EE-EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe-cC
Q 043707 268 KC-LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG-SS 344 (347)
Q Consensus 268 ~~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg-s~ 344 (347)
.. +..+..|...+.++.|.|++ .+++++.|+.+++|+........ ... ...|...+..+.|.+++..++.+ ..
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS--SLT--LKGHEGPVSSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE--Eee--ecccCCceEEEEECCCCCEEEEeecC
Confidence 64 55556788999999999965 67778888999999887543211 111 34677789999994332455555 45
Q ss_pred CC
Q 043707 345 DG 346 (347)
Q Consensus 345 DG 346 (347)
|+
T Consensus 350 d~ 351 (466)
T COG2319 350 DG 351 (466)
T ss_pred CC
Confidence 43
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=6e-14 Score=125.43 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=125.9
Q ss_pred ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707 154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (347)
.+.+.+|++.|.|+.|+.+|.+|++|+.|-.+.|||.-..+....+.. +
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------------------------------g 91 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------------------------------G 91 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------------------------------c
Confidence 456789999999999999999999999999999999986654443332 5
Q ss_pred cCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC----------EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCc
Q 043707 234 HYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRISDC----------KCLESINAHDDAINSVVAGFDS--LVFTGSADGT 299 (347)
Q Consensus 234 h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~~~----------~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~ 299 (347)
|...|.++.|-|. ..++++|..|..|+++|+... +....+..|...|..|+-.|++ .+.++++||+
T Consensus 92 HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 92 HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred cccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 9999999999994 678999999999999999742 3455667899999999998887 8899999999
Q ss_pred EEEEEcccCCccc----eeeehhhhhccCCcEEEEEEccCC-CEEEEecCCC
Q 043707 300 VKVWRRELQGKGT----KHFLAQVLLKQENAITALAVNQES-AVVYCGSSDG 346 (347)
Q Consensus 300 I~vwd~~~~~~~~----~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~DG 346 (347)
|+-+|++...... ....+..+...--...++..+|.. .+|++|+.|-
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp 223 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP 223 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCc
Confidence 9999998422110 011111122223467889999966 7899998874
No 193
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.53 E-value=5.3e-13 Score=112.52 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=121.9
Q ss_pred eccccEEEEeec-------CCEEEEecCCCcEEEEeCCCc--ceeee-----cCCCCeeEEEEeCC----CCEEEEEeCC
Q 043707 121 RKEGHIYSLAAS-------GDLLYTGSDSKNIRVWKNLKE--FSGFK-----SNSGLVKAIIITGD----SNKIFTGHQD 182 (347)
Q Consensus 121 ~h~~~V~~l~~~-------~~~l~tg~~dg~I~vwd~~~~--~~~~~-----~h~~~V~~l~~sp~----~~~l~s~~~D 182 (347)
.|+.+|+.++++ ...++|.+.+ .+.+|+.... ++.++ .|......++|+-+ ..+++.|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 466778888875 3467776654 6788863322 12222 36667788888763 3378889999
Q ss_pred CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEE
Q 043707 183 GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKV 261 (347)
Q Consensus 183 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~v 261 (347)
|.|||.|+.+++..... .+|...|+.+.++|+ .+++++++.|..|++
T Consensus 115 GvIrVid~~~~~~~~~~--------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNY--------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred eEEEEEecchhhhccce--------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 99999999887643322 269999999999996 579999999999999
Q ss_pred EeCCCCEEEEEE---ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707 262 WRISDCKCLESI---NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 262 wdl~~~~~~~~~---~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~ 307 (347)
|++++..|+..| .+|.+.|.++.|++++ +|++++.|.+|++|++..
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 999999999887 5799999999999998 999999999999999973
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=7.8e-12 Score=107.10 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=134.2
Q ss_pred cEEEEeecCCEEEEecCCC--cEEEEeCCCccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707 125 HIYSLAASGDLLYTGSDSK--NIRVWKNLKEFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV 201 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg--~I~vwd~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~ 201 (347)
.|..+-++..++|..+.+. .+++.+..+.... -......|.++.++.+ +|+++-++ .|.|||+++.+.......
T Consensus 48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIET 124 (391)
T ss_pred EEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhc
Confidence 4556668888777766554 4777776544221 1123467999998655 77777765 499999998865433221
Q ss_pred cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCc
Q 043707 202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDA 279 (347)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~ 279 (347)
. | .+...+..+++++.+.+|+--+ ..|.|.|||+.+.+++..+.+|++.
T Consensus 125 ~--~---------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 125 T--P---------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred c--C---------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 1 0 1455576777777777777543 3688999999999999999999999
Q ss_pred EEEEEeCCCC-EEEEEeCCCc-EEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCCC
Q 043707 280 INSVVAGFDS-LVFTGSADGT-VKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 280 v~~i~~~~~~-~l~s~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+.+++|+++| +|||+++.|+ ||||.+..+++ +..+..- -..|.+|+|+|++++|++.|..+|
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~k------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQK------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccE------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 9999999999 9999998885 69999975543 3333222 346899999999999999887664
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=6.7e-13 Score=111.56 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=126.1
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
-..+|+|.+|++|.+.++.+.....|.||.....+.-.... . +..|...|+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h--t---------------------------ls~Hd~~vt 59 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH--T---------------------------LSEHDKIVT 59 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece--e---------------------------hhhhCccee
Confidence 34789999999999999999999999999988765211111 0 114999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC-C--EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceee
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISD-C--KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHF 315 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~-~--~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~ 315 (347)
+|.|+|..+.|++++.|..-+||.... + ++...+..+..+.++|.|+|.+ .||+|+....|.||-.+.+. ...
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---dWW 136 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---DWW 136 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---cee
Confidence 999999999999999999999999843 2 4555666788899999999986 99999999999999987443 222
Q ss_pred e-hhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 316 L-AQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 316 ~-~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
. .+.-..+...|+++.|+|++-+|++||.|+.
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 2 2333456789999999999999999999973
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.8e-13 Score=127.85 Aligned_cols=241 Identities=20% Similarity=0.270 Sum_probs=149.2
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccccccceeEeeeeccccEEEEeecCCEEEEecCCCcEE
Q 043707 67 GTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIR 146 (347)
Q Consensus 67 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~ 146 (347)
+++.-+....+......|.. .....+.|-+...|.+-...+.... ..+.|+++.-...+|+++++-..|+
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~--y~~~~~~~eLVTaw~~Ls~~~~~~r--------~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKD--YADKWKKPELVTAWSSLSDQLPGAR--------GTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred cchhheeeeccCceEEEecc--cccccCCceeEEeeccccccCccCC--------CCCeeeehhhhCCeEEecCCeeEEE
Confidence 33444445555566666654 3333244444444444333322111 1233444443333444444478999
Q ss_pred EEeCCCcceeee---cCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEE
Q 043707 147 VWKNLKEFSGFK---SNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (347)
Q Consensus 147 vwd~~~~~~~~~---~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (347)
|||..++..... +-...|+++.-+- .|+.|+.|..||.||+||.+........
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v----------------------- 1247 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV----------------------- 1247 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----------------------
Confidence 999776543322 2334567665543 5789999999999999999876432111
Q ss_pred EeecceeeeeecCCC--eeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEE--EEEEecCC---CcEEEEEeCCCC-EEEE
Q 043707 223 VRRNRNVLKIRHYDA--VSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKC--LESINAHD---DAINSVVAGFDS-LVFT 293 (347)
Q Consensus 223 ~~~~~~~~~~~h~~~--V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~--~~~~~~h~---~~v~~i~~~~~~-~l~s 293 (347)
..+..|.+. |..+.+.+.|- .|++|+.||.|++||+|.... ..++..|- +.++++..+++. .+|+
T Consensus 1248 ------~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1248 ------CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred ------eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence 112247766 99999998654 599999999999999997422 22233332 358999999886 7788
Q ss_pred EeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 294 GSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 294 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|+. +.|+||++..+....-..-...+....+.+.+++|+|-.-+||+|+.|.+
T Consensus 1322 Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 877 99999999743221111111112223457899999999889999988753
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=3.5e-12 Score=123.76 Aligned_cols=204 Identities=15% Similarity=0.226 Sum_probs=138.4
Q ss_pred ccceeEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCcc---------eeeecCCCCeeEEEEeCCCCEEEEE
Q 043707 112 CNGLIGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKEF---------SGFKSNSGLVKAIIITGDSNKIFTG 179 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~~---------~~~~~h~~~V~~l~~sp~~~~l~s~ 179 (347)
.+.+|..|..|...|..++. ++.++++|+.||+|++|+..+.. .++......+.++...+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 34468889999998877764 35799999999999999954332 2233346789999999999999999
Q ss_pred eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC-eeEEEEcC-CC-CEEEEEeCC
Q 043707 180 HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA-VSCLSLNA-EQ-GLLYSGSWD 256 (347)
Q Consensus 180 ~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~-~~-~~l~s~s~d 256 (347)
+.||.|++.+++..+......... +.......+. |.+.++.. .+ ..|+.+..-
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~------------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQV------------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred cCCCeEEEEEccccccccceeeee------------------------ecccccCCCceEEeecccccccceeEEEEEec
Confidence 999999999998642111110000 0000011222 23333332 23 377788888
Q ss_pred CcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707 257 KTLKVWRISDCKCLESIN--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN 333 (347)
Q Consensus 257 g~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 333 (347)
+.|..||++....+.+++ ...+.|++++.+|.+ +++.|...|.+.+||++.... ....-..+..+|+.|..+
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEEee
Confidence 999999999876555443 345789999999987 999999999999999985432 122223445788888887
Q ss_pred cCC---CEEEEecC
Q 043707 334 QES---AVVYCGSS 344 (347)
Q Consensus 334 p~~---~~l~sgs~ 344 (347)
|-. ..+++++.
T Consensus 1248 ~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGS 1261 (1431)
T ss_pred ccCCCCceEEEecc
Confidence 733 45665554
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=6.3e-12 Score=118.35 Aligned_cols=210 Identities=20% Similarity=0.343 Sum_probs=145.9
Q ss_pred EeecCCEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCC---CEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707 129 LAASGDLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDS---NKIFTGHQDGKIRIWKVSRKNPSVHKRVGS 203 (347)
Q Consensus 129 l~~~~~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~ 203 (347)
++.++++++.... ..|.||.. +.+...+..|..++..+.+.|.. .++++++.||+|++||...+..........
T Consensus 24 fSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 24 FSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred cccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 4456676666654 48999974 45677889999999999998843 468899999999999998776432221110
Q ss_pred c-------ccccc---eE-Eec--------------------------------------------cCCCeEEE------
Q 043707 204 L-------PTFKD---YV-KSS--------------------------------------------VNPKNYVE------ 222 (347)
Q Consensus 204 ~-------~~~~~---~~-~~~--------------------------------------------~~~~~~~~------ 222 (347)
. +...+ .+ ... .+...+..
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~ 182 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK 182 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence 0 00000 00 000 00000000
Q ss_pred -----Eeec-----ceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CEEEEEEecCCCcEEEEEeCCC
Q 043707 223 -----VRRN-----RNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----CKCLESINAHDDAINSVVAGFD 288 (347)
Q Consensus 223 -----~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----~~~~~~~~~h~~~v~~i~~~~~ 288 (347)
+... .......|...++|.+++|.++++++|..||+|.+|.--. ......+..|...|+++.|+++
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 0000 0011124667789999999999999999999999996422 2345678899999999999999
Q ss_pred C-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 289 S-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 289 ~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
| +|++||..|.+-+|.+.++++ +.|..-.++|..+.++||+.+.+....|.
T Consensus 263 G~~LlSGG~E~VLv~Wq~~T~~k-------qfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 263 GAYLLSGGREGVLVLWQLETGKK-------QFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred CceEeecccceEEEEEeecCCCc-------ccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 8 999999999999999986643 34445578999999999998877776664
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.2e-11 Score=114.69 Aligned_cols=218 Identities=17% Similarity=0.254 Sum_probs=131.8
Q ss_pred EEEeecCCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 127 YSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 127 ~~l~~~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
.+++++++++++|..||.|.+|... ...+.+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++.....+
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPR 290 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPR 290 (792)
T ss_pred EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccc
Confidence 3455679999999999999999632 2366788899999999999999999999999999999999987544333
Q ss_pred eccc-------ccccceEEeccCCCeEEEEee--cceee------------eeecCCCeeEEEEcCCCCEEEEEeCCCcE
Q 043707 201 VGSL-------PTFKDYVKSSVNPKNYVEVRR--NRNVL------------KIRHYDAVSCLSLNAEQGLLYSGSWDKTL 259 (347)
Q Consensus 201 ~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 259 (347)
++.. +....+.....+.. +.-+.. ..... ..+..+-.+.++++|..+.++-.+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNq-I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQ-IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCce-EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence 3321 11111111111111 111110 00000 00112234455566644455555556666
Q ss_pred EEEeCCCCEEEEE-------------------------------------------------------------------
Q 043707 260 KVWRISDCKCLES------------------------------------------------------------------- 272 (347)
Q Consensus 260 ~vwdl~~~~~~~~------------------------------------------------------------------- 272 (347)
.+||+-+.+.+..
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 6665532211111
Q ss_pred -EecCCCcEEEEEeCC-C-C-EEEEEeCCCcEEEEEcccCCc----cceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 273 -INAHDDAINSVVAGF-D-S-LVFTGSADGTVKVWRRELQGK----GTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 273 -~~~h~~~v~~i~~~~-~-~-~l~s~~~dg~I~vwd~~~~~~----~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
...|...+...++.+ . . .+++++.||.++||-+..... ...+.+...-.-|..++++++|+.||..|+++-+
T Consensus 450 I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~ 529 (792)
T KOG1963|consen 450 INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD 529 (792)
T ss_pred EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC
Confidence 123555554444433 2 2 788999999999998843222 2233333333347889999999999988877654
Q ss_pred C
Q 043707 345 D 345 (347)
Q Consensus 345 D 345 (347)
|
T Consensus 530 ~ 530 (792)
T KOG1963|consen 530 D 530 (792)
T ss_pred C
Confidence 4
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=3.1e-14 Score=132.81 Aligned_cols=157 Identities=20% Similarity=0.404 Sum_probs=126.9
Q ss_pred CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 152 KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
+.++.+.+|..+|+|+.|...|.++++|+.|..|+||.+++........
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r------------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR------------------------------- 229 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------------------------------
Confidence 3456678999999999999999999999999999999988775432222
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCcc
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKG 311 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~ 311 (347)
+|.+.|+.++.+....++++++.|..|++|.+.++.++..+.+|.++|++|+|+|-. +.+.||++++||.+.....
T Consensus 230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~ 305 (1113)
T KOG0644|consen 230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRI 305 (1113)
T ss_pred -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccc
Confidence 699999999999999999999999999999999999999999999999999999965 7889999999999833221
Q ss_pred ceeeehhhhh-ccCCcEEEEEEccCCCEEEEecCCC
Q 043707 312 TKHFLAQVLL-KQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 312 ~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
. ...-+. .-..-+-.+-|..++...++++.|+
T Consensus 306 y---~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 306 Y---VPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred c---CCCCCCcccccceeeeeccccccccccccCCc
Confidence 1 111111 1234566777777777788888776
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=7e-13 Score=120.56 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=124.1
Q ss_pred cceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 153 EFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 153 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
.+..+.+|...|.++.|+| +..+|++|+.|..|+||.+..+....... .....
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSa--------------------------pe~~~ 124 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSA--------------------------PEIDV 124 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCC--------------------------cceee
Confidence 3556788999999999999 56699999999999999998442111100 01111
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~ 310 (347)
-+..-.|.|+.|+|...-|+..+..|+++|||+.+++.+..+.+|.+.|.+..|+.|| +|++++.|..|+|||.+....
T Consensus 125 g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 125 GGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred cCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC
Confidence 1234468899999975444444457899999999999999999999999999999998 889999999999999986655
Q ss_pred cceeeehhhhhccCCc-EEEEEEccCCCEEEEecCC
Q 043707 311 GTKHFLAQVLLKQENA-ITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 311 ~~~~~~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~D 345 (347)
+++...+|.+. =..+.|--+...|++.|.+
T Consensus 205 -----piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~ 235 (1012)
T KOG1445|consen 205 -----PIQTTEGHGGMRDSRVLWAGNWERLISTGFT 235 (1012)
T ss_pred -----ccccccccccchhheeeeccchhhhhhcccc
Confidence 77777888653 3457777666677776654
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=2.9e-11 Score=103.44 Aligned_cols=184 Identities=15% Similarity=0.199 Sum_probs=125.6
Q ss_pred ccEEEEee---cCCEEEEecCCCcEEEEeCC------Cc----------ceeeecCCCCeeEEEEeCCCCEEEEEeC-CC
Q 043707 124 GHIYSLAA---SGDLLYTGSDSKNIRVWKNL------KE----------FSGFKSNSGLVKAIIITGDSNKIFTGHQ-DG 183 (347)
Q Consensus 124 ~~V~~l~~---~~~~l~tg~~dg~I~vwd~~------~~----------~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg 183 (347)
..|.|++| +++-|+.|+..| |.+|... +. +....+| ..|+.++|.+||..+++++. |.
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 46888887 466888888765 9999632 11 1112234 68999999999999999984 56
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
.|+|||.+++....... ...+.++-+.|+||+.+|+.+.-|+..++|.
T Consensus 219 si~iWdpdtg~~~pL~~--------------------------------~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIP--------------------------------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred eEEEEcCCCCCcccccc--------------------------------cCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 79999999987544332 1456788899999999999999999999996
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccc---------eeeehhhh-----hcc----
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGT---------KHFLAQVL-----LKQ---- 323 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~---------~~~~~~~~-----~~h---- 323 (347)
............-.+.|....|+|+| +|++.+..-. +|.+...++.. ...++..+ ...
T Consensus 267 e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~ 344 (445)
T KOG2139|consen 267 ENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC 344 (445)
T ss_pred hcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence 55443333333345589999999998 5555554443 44443222210 11111111 111
Q ss_pred CCcEEEEEEccCCCEEEEec
Q 043707 324 ENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 324 ~~~V~~l~~~p~~~~l~sgs 343 (347)
.+.+.+++|.|.|.+||+.=
T Consensus 345 cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 345 CGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred cCccceeeECCCCCEEEEEE
Confidence 45788999999999998753
No 203
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=1.7e-11 Score=101.23 Aligned_cols=109 Identities=16% Similarity=0.283 Sum_probs=85.2
Q ss_pred CCCeeEEEEeCCCCEEEEE--eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 161 SGLVKAIIITGDSNKIFTG--HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~--~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
.++|.+++|+|+++.|+.+ ..++.|.+||++... .. . -+...+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-i~--~--------------------------------~~~~~~ 103 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-IF--S--------------------------------FGTQPR 103 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-eE--e--------------------------------ecCCCc
Confidence 4579999999999987655 367799999996221 11 1 134567
Q ss_pred eEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe------CCCcEEEEEcc
Q 043707 239 SCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS------ADGTVKVWRRE 306 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~------~dg~I~vwd~~ 306 (347)
..+.|+|+|++|++++.+ |.|.+||+++.+.+..++ |. .+..++|+|+| +|+++. .|+.++||+..
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 889999999999998753 669999999999988876 33 36899999999 666665 38999999986
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.5e-12 Score=113.26 Aligned_cols=148 Identities=22% Similarity=0.359 Sum_probs=112.3
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc
Q 043707 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN 244 (347)
Q Consensus 165 ~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 244 (347)
.+++|+.+|..+++|+.||++|||+........... .|...|.+|.|+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------------------------------~~~~eV~DL~FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------------------------------AHHAEVKDLDFS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------------------------------hhcCccccceeC
Confidence 789999999999999999999999976654322221 488999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCCC-----EEEE-EeCCCcEEEEEcccCCccceeee
Q 043707 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFDS-----LVFT-GSADGTVKVWRRELQGKGTKHFL 316 (347)
Q Consensus 245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~~-----~l~s-~~~dg~I~vwd~~~~~~~~~~~~ 316 (347)
||+++|++-+.| ..+||+++++.++..... .+.-...+.|+.|+ ++++ ....+.|+.||+...... ....
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~ 273 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR 273 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence 999999999999 899999999977766642 23345666777665 4444 345678888888654432 2223
Q ss_pred hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 317 AQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 317 ~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..........|++++.+++|++++.|+.||
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 333334455899999999999999999998
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=4.1e-12 Score=121.62 Aligned_cols=176 Identities=20% Similarity=0.336 Sum_probs=124.3
Q ss_pred CEEEEecCCCcEEEEeCC----Cc---ceee---ecC----CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707 134 DLLYTGSDSKNIRVWKNL----KE---FSGF---KSN----SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~~----~~---~~~~---~~h----~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~ 199 (347)
.+|++|+.||.||||+.. +. +..+ .++ .+.=.-+.|..+..+|++++.-..|||||..........
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 489999999999999722 11 1111 111 122234577776667888877889999999876533222
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCE---EEEEEec
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK---CLESINA 275 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~---~~~~~~~ 275 (347)
.. +....|+.++-+- .|+.++.|..||.+++||.|... .+...+.
T Consensus 1204 P~-------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1204 PY-------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred cc-------------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 21 2445566665544 37999999999999999998653 4666778
Q ss_pred CCCc--EEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc---CCcEEEEEEccCCCEEEEecC
Q 043707 276 HDDA--INSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ---ENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 276 h~~~--v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~p~~~~l~sgs~ 344 (347)
|... |..+.+.+.| .|++|+.||.|++||++...+ . .......| .+.++++..+++...+|+|+.
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---E-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---c-ccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 8877 9899888766 799999999999999996422 1 11122223 236999999999999999985
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.7e-11 Score=101.15 Aligned_cols=101 Identities=8% Similarity=0.138 Sum_probs=76.8
Q ss_pred cCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC---CCcEEEEEccc
Q 043707 234 HYDAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRREL 307 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~--s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~---dg~I~vwd~~~ 307 (347)
..++|..++|+|++..+++. ..++.|.+||++ ++.+..+. ...++.|.|+|+| +|++++. .|.|.+||.+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 45679999999999887554 457899999996 67777764 5678899999998 7777664 46799999983
Q ss_pred CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.. .+... .| ..++.++|+|+|++|+++...
T Consensus 135 ~~------~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 135 KK------KISTF-EH-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CE------Eeecc-cc-CcEEEEEEcCCCCEEEEEEec
Confidence 32 23222 22 357899999999999998753
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.1e-11 Score=106.93 Aligned_cols=201 Identities=12% Similarity=0.163 Sum_probs=149.3
Q ss_pred EeeeeccccEEEEeecCCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCC-CCEEEEEeCC--CcEEE
Q 043707 117 GSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGD-SNKIFTGHQD--GKIRI 187 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~D--g~I~v 187 (347)
.++...++.|..+......|++|-.+|.+.+|... ..+..+..+ ..+..+.-++. ...+++|+.. ..+.+
T Consensus 99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 34445566777777777788999999999999744 223333333 45666766663 3456679988 88999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE--QGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~vwdl~ 265 (347)
||+...+++.... ..|. . .+-+.-.-.++.+.|-+. ...|++++.-+.+++||.+
T Consensus 178 wdle~~~qiw~aK--Nvpn------------D---------~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 178 WDLEQSKQIWSAK--NVPN------------D---------RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred eecccceeeeecc--CCCC------------c---------cccceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 9998774322111 0100 0 001123345677888887 8899999999999999998
Q ss_pred CC-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 266 DC-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 266 ~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.+ +++.+|..-+.+++++...|++ +|++|..-+.+..||++.... +...+.+..+.|++|..+|..++|++||
T Consensus 235 ~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 235 HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeec
Confidence 65 5889998889999999999988 899999999999999985432 4445778899999999999999999999
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
-|.
T Consensus 310 LDR 312 (412)
T KOG3881|consen 310 LDR 312 (412)
T ss_pred cce
Confidence 986
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.42 E-value=5.9e-11 Score=106.92 Aligned_cols=187 Identities=12% Similarity=0.212 Sum_probs=117.9
Q ss_pred EEeecCCEEEEec-CCCcEEEEeCCCc------ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceee
Q 043707 128 SLAASGDLLYTGS-DSKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 128 ~l~~~~~~l~tg~-~dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~ 199 (347)
++.+++++|++++ .++.|.+|+..+. ...+ .+.....+++++|+++++++++ .++.|.+||+++.......
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 4456788777765 4889999986421 1112 1234567889999998886555 5699999999863221100
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC--C--EEEEEEe
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD--C--KCLESIN 274 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~--~--~~~~~~~ 274 (347)
.... ...........+.|+|++++++++.. +++|.+||+.. + +.+..+.
T Consensus 165 ~~~~--------------------------~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 165 EPAE--------------------------VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred CCCc--------------------------eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 0000 00001234567899999999988876 89999999973 2 3344443
Q ss_pred cC------CCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 275 AH------DDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 275 ~h------~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
.+ ......+.++|++ +++++. .++.|.+|++...+. ...+...... ......++|+|+|++|+++..
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~--~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS--VLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC--eEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence 22 1123468899998 666664 578999999964332 1112222111 124568999999999998765
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.6e-12 Score=117.41 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=107.2
Q ss_pred CCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCC
Q 043707 142 SKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNP 217 (347)
Q Consensus 142 dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+..|++||.. ...+.+..|...+...+|+|+|++|+.++.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------- 245 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence 4689999854 3355667788889999999999999888754 369999998764321111
Q ss_pred CeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-
Q 043707 218 KNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDS-LVF- 292 (347)
Q Consensus 218 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vw--dl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~- 292 (347)
.......++|+||++.|+.+. .+|.+.|| |+.+++ +..+..+...+....|+||+ .|+
T Consensus 246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence 112234689999999887764 67876555 665554 44566677778889999998 444
Q ss_pred EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 293 TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 293 s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
++..++...||++...+... .. + .+.. ..++|+|+|+.|+.++.+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~--~~---l-~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGA--SL---V-GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred EECCCCCceEEEEECCCCCe--EE---e-cCCC--CCccCCCCCCEEEEEcCC
Confidence 55568889999876433211 11 1 1222 345667777766665543
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=103.90 Aligned_cols=190 Identities=14% Similarity=0.237 Sum_probs=126.9
Q ss_pred EEEEeecCC--EEEEecCCCcEEEEeCC-Ccceeeec-CCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCcee-e
Q 043707 126 IYSLAASGD--LLYTGSDSKNIRVWKNL-KEFSGFKS-NSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVH-K 199 (347)
Q Consensus 126 V~~l~~~~~--~l~tg~~dg~I~vwd~~-~~~~~~~~-h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~-~ 199 (347)
+..++|+.. .++.+..|-.|++||.. +....++. -...|+|++|-| .+..|+.|+..| |.+|.....-.... .
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 444556544 57788999999999844 33333333 235799999999 455788888654 88998764321111 0
Q ss_pred eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecCCC
Q 043707 200 RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAHDD 278 (347)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h~~ 278 (347)
..... . ...+........|+.|.|++||..|++++. |..|.|||..++..+.-....-+
T Consensus 180 ~~~s~-~-------------------~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 180 RMMST-H-------------------HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred ccccc-c-------------------chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 00000 0 000011112368999999999999999886 67899999998876655544556
Q ss_pred cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 279 AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 279 ~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
.+.-+.|+||+ +|+++.-|+..++|+....-- ...-.. -.+.|...+|+|+|++|+-.
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-----~erw~l-gsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-----KERWIL-GSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccce-----ecceec-cCCceeeeeecCCCCEEEEE
Confidence 78889999998 999999999999996652211 111112 23489999999999776544
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.6e-11 Score=105.90 Aligned_cols=145 Identities=13% Similarity=0.202 Sum_probs=121.9
Q ss_pred CCEEEEecCC--CcEEEEeCCCcceeeecCC-----------CCeeEEEEeCC--CCEEEEEeCCCcEEEEecCCCCCce
Q 043707 133 GDLLYTGSDS--KNIRVWKNLKEFSGFKSNS-----------GLVKAIIITGD--SNKIFTGHQDGKIRIWKVSRKNPSV 197 (347)
Q Consensus 133 ~~~l~tg~~d--g~I~vwd~~~~~~~~~~h~-----------~~V~~l~~sp~--~~~l~s~~~Dg~I~vwd~~~~~~~~ 197 (347)
..++++|+.. ..+.|||+.+..+.+.+.. -.++++.|.+. ...|+++..-+.||+||.+.++...
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 5588889998 8899999887766665532 24678899886 7899999999999999999765332
Q ss_pred eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecC
Q 043707 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAH 276 (347)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h 276 (347)
.... --..+++++..-|+++.+++|..-|.+..+|++.++.+.. +++.
T Consensus 241 ~~fd-------------------------------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 241 AQFD-------------------------------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred eEec-------------------------------cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 2211 1467899999999999999999999999999999998877 8889
Q ss_pred CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 277 DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 277 ~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
.+.|.+|.++|.+ +++++|-|+.|||+|+.+.
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 9999999999986 9999999999999999863
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.5e-11 Score=113.08 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=115.5
Q ss_pred EeeeeccccEEEEee--cCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEE-
Q 043707 117 GSIVRKEGHIYSLAA--SGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIW- 188 (347)
Q Consensus 117 ~~l~~h~~~V~~l~~--~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vw- 188 (347)
..+..|...+....| +|+.|+..+.+ ..|++||.... ...+....+....++|+|||++|+.+. .+|.+.||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 445556666766554 57777776543 46999996533 122222233445789999999888765 68877666
Q ss_pred -ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 043707 189 -KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISD 266 (347)
Q Consensus 189 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~ 266 (347)
|+.+++.. .+ ..+...+....|+|+++.|+..+ .++...||++..
T Consensus 277 ~d~~~~~~~---~l------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 277 MGANGGTPS---QL------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EECCCCCeE---ee------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 44443211 11 12455677899999999776554 578888887643
Q ss_pred C-EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 267 C-KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 267 ~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
. .....+ .+.. ....|+|++ .|+..+.++ +.+||+..+.. ..+.. .+ ....+.|+|+|++|+.++.
T Consensus 324 ~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~---~~lt~---~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST---EVLSS---TF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---EEecC---CC--CCCCceECCCCCEEEEEEc
Confidence 2 222223 3433 457899998 666666654 55699875432 01111 11 2356789999999999988
Q ss_pred CC
Q 043707 345 DG 346 (347)
Q Consensus 345 DG 346 (347)
+|
T Consensus 392 ~g 393 (429)
T PRK01742 392 QG 393 (429)
T ss_pred CC
Confidence 76
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=9.8e-12 Score=107.26 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=121.4
Q ss_pred eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee-eeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707 155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH-KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233 (347)
Q Consensus 155 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (347)
+.+.+|.+.|.+|.|+.++++|++|+.|..++||+++..-.... +.++ +.-..
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~--------------------------~~~~~ 103 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG--------------------------VMEHP 103 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce--------------------------eccCc
Confidence 45678999999999999999999999999999999875321111 0000 00013
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec--CCCcEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCc
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA--HDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~--h~~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~ 310 (347)
|...|.|++|......|++|..++++...|+.+.+.+..+.. ..+.|..+..+|- ..|++.+.++.|.+||.+....
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 778999999999999999999999999999999998887752 2348999999885 5999999999999999985543
Q ss_pred cceeeehhhhhccCCcEEEEEEccCC-CEEEEecC
Q 043707 311 GTKHFLAQVLLKQENAITALAVNQES-AVVYCGSS 344 (347)
Q Consensus 311 ~~~~~~~~~~~~h~~~V~~l~~~p~~-~~l~sgs~ 344 (347)
.. .+..+.........+.|+|.. .+|++.+.
T Consensus 184 ~~---~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 184 PI---SLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred CC---ceeeecCCCccceeeeecCCCceeEEeccc
Confidence 11 122223345578899999977 55665554
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.39 E-value=5.3e-12 Score=112.85 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=84.4
Q ss_pred ecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------------------------------CEEEEE
Q 043707 233 RHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----------------------------------------CKCLES 272 (347)
Q Consensus 233 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----------------------------------------~~~~~~ 272 (347)
.|.+.|.|-.|+|+|.-|++++.||.|++|.-.. ...+-.
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~ 181 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR 181 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE
Confidence 5888999999999999999999999999997421 001223
Q ss_pred EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 273 INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 273 ~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
.++|++-|.++.|++.. ++++|++|-..+|||.. +. .+.....|+.+|++++|+|+ ..++.+|.
T Consensus 182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~-----~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GA-----NLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EeccCcEEEEeecCccccceeecCCceeEEeeccc--Cc-----ccccCChhccceeeeeeccc-cceeeeee
Confidence 56899999999999976 99999999999999986 22 56677789999999999999 66666653
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=4e-12 Score=111.76 Aligned_cols=176 Identities=17% Similarity=0.317 Sum_probs=134.4
Q ss_pred CEEEEecCCCcEEEEeC--CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707 134 DLLYTGSDSKNIRVWKN--LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
-+|++++..|.++.-|+ ++.+..+..-.+.+..++-+|-...+-+|...|+|.+|.-...++.....
T Consensus 222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL----------- 290 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----------- 290 (545)
T ss_pred heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-----------
Confidence 37888888998888884 45566777777889999999977799999999999999988776544332
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEE
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l 291 (347)
.|.++|.+|++.++|.+++|.+.|..++|||++....+.++.. .-+...++++..|+|
T Consensus 291 ---------------------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL 348 (545)
T KOG1272|consen 291 ---------------------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL 348 (545)
T ss_pred ---------------------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccce
Confidence 3999999999999999999999999999999999988777765 445677888877777
Q ss_pred EEEeCCCcEEEEEcccCCccceeeehhhhhcc--CCcEEEEEEccCCCEEEEecCCC
Q 043707 292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 292 ~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
|.+ ....|.||.-...+.+ . ....+..| ...|..|.|.|-...|-.|-.-|
T Consensus 349 A~~-~G~~v~iw~d~~~~s~-~--~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 349 ALS-YGDHVQIWKDALKGSG-H--GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eee-cCCeeeeehhhhcCCC-C--CCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 655 5568999965433211 1 11122223 45899999999777776665544
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=3.9e-11 Score=102.04 Aligned_cols=220 Identities=14% Similarity=0.208 Sum_probs=139.7
Q ss_pred cccEEEEee--cCCEEEEecCCCcEEEEeCCCc-------ceeeecCC------------CCeeEEEEeCCC--CEEEEE
Q 043707 123 EGHIYSLAA--SGDLLYTGSDSKNIRVWKNLKE-------FSGFKSNS------------GLVKAIIITGDS--NKIFTG 179 (347)
Q Consensus 123 ~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~-------~~~~~~h~------------~~V~~l~~sp~~--~~l~s~ 179 (347)
..-|.++.+ .|++|+||+.+|.|.++...+. ...++.|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 345778876 4999999999999999963322 33455553 358889998855 468888
Q ss_pred eCCCcEEEEecCCCCCceeee---ecccccccc-eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC
Q 043707 180 HQDGKIRIWKVSRKNPSVHKR---VGSLPTFKD-YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW 255 (347)
Q Consensus 180 ~~Dg~I~vwd~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 255 (347)
..|.+|++|.+..+....... ....+.... +-................+...-.|...|++++++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999998664322100 000000000 000001111111222233344456999999999999999888876
Q ss_pred CCcEEEEeCCCCE---EEEEEecC-----CCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcccee----------e
Q 043707 256 DKTLKVWRISDCK---CLESINAH-----DDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH----------F 315 (347)
Q Consensus 256 dg~i~vwdl~~~~---~~~~~~~h-----~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~----------~ 315 (347)
|=.|.+|.+.-.. .+..++.+ ..-|++..|+|.. .++-.+..|+|++.|++.......+ .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7889999986332 23333444 2457888999975 7888889999999999843221111 0
Q ss_pred ehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 316 LAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
....+..--..|.++.|+++|++|++-.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRD 291 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRD 291 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEec
Confidence 1111222335789999999999998743
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=117.38 Aligned_cols=142 Identities=22% Similarity=0.316 Sum_probs=119.4
Q ss_pred CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
.-++++|+.-+.|.+|+.. +....+.+|.+.|..+.|+-+|+++++++.|.++|+|++++.+......
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~---------- 214 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG---------- 214 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc----------
Confidence 4489999999999999844 2222578999999999999999999999999999999999987544221
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-CcEEEEEeCCCC
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAINSVVAGFDS 289 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-~~v~~i~~~~~~ 289 (347)
.+|...|..+.|.|. .+++++.|.+.++|+. .++.+..+..|. ..|..++..++.
T Consensus 215 ---------------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 215 ---------------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGV 270 (967)
T ss_pred ---------------------ccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCc
Confidence 259999999999997 9999999999999976 456666888785 468899988876
Q ss_pred -EEEEEeCCCcEEEEEcccC
Q 043707 290 -LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 290 -~l~s~~~dg~I~vwd~~~~ 308 (347)
.++|++.|+.+++||+...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 8889999999999998743
No 218
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=3.2e-10 Score=102.15 Aligned_cols=175 Identities=11% Similarity=0.204 Sum_probs=112.7
Q ss_pred EEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC-CCCceeeeeccccccc
Q 043707 136 LYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR-KNPSVHKRVGSLPTFK 208 (347)
Q Consensus 136 l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~-~~~~~~~~~~~~~~~~ 208 (347)
+++...++.|++|+... .+..+. +.+....++++|++++|++++ .++.|.+|+++. +........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------- 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------- 76 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence 44447789999999642 223332 345677899999999887765 578899999973 221111110
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-C---EEEEEEecCCCcEEEE
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISD-C---KCLESINAHDDAINSV 283 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~-~---~~~~~~~~h~~~v~~i 283 (347)
........++++|++++|++++. ++.|.+|++.+ + +.+..+. +......+
T Consensus 77 ------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 77 ------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA 131 (330)
T ss_pred ------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence 12234567999999999988875 88999999964 2 2333333 22345678
Q ss_pred EeCCCC-EE-EEEeCCCcEEEEEcccCCccceee-ehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 284 VAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHF-LAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 284 ~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+++|++ ++ ++...++.|.+||+...+...... ..... ........++|+|++++|+++..
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEec
Confidence 899997 55 455567999999997533200000 00011 11334678999999999988765
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=3.8e-12 Score=111.95 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=118.7
Q ss_pred CCCcEEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707 141 DSKNIRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 141 ~dg~I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
....++||| .+.++..++.| ..|..+.|-|..-+|++++..|.++.-|+..++.......
T Consensus 189 QK~y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t------------------ 249 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT------------------ 249 (545)
T ss_pred hhceEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc------------------
Confidence 345566666 33455555554 4577778888766777778888888888887765433322
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG 298 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg 298 (347)
..+.+..|+-+|-...+-+|...|+|.+|.-...+++..+-.|.++|.+|++.++| +++|.+.|.
T Consensus 250 --------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr 315 (545)
T KOG1272|consen 250 --------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR 315 (545)
T ss_pred --------------cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc
Confidence 45667788889988899999999999999999999999999999999999999998 999999999
Q ss_pred cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707 299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338 (347)
Q Consensus 299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 338 (347)
.|+|||++...+ ++.+.. ..+...++++..|-+
T Consensus 316 ~~kIWDlR~~~q------l~t~~t-p~~a~~ls~SqkglL 348 (545)
T KOG1272|consen 316 KVKIWDLRNFYQ------LHTYRT-PHPASNLSLSQKGLL 348 (545)
T ss_pred ceeEeeeccccc------cceeec-CCCccccccccccce
Confidence 999999985432 222222 236677888866543
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=8.1e-11 Score=112.88 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=137.1
Q ss_pred cCCEEEEecCCCcEEEEeCCCcceeee-cCCCC-----eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707 132 SGDLLYTGSDSKNIRVWKNLKEFSGFK-SNSGL-----VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~-~h~~~-----V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
..+.++.+..+..+.+||.......++ .+... ..-+.++++.-++++|+.-+.|.+|+....+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------- 169 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------- 169 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--------
Confidence 456788888888999998654322221 12221 2223346677789999999999999987332111
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-EEecCCCcEEEEE
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-SINAHDDAINSVV 284 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-~~~~h~~~v~~i~ 284 (347)
...+|.+.|-.+.|+.+|+++++.++|+++++|++.+.+.+. ..-+|...|..+.
T Consensus 170 ------------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 170 ------------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred ------------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 223699999999999999999999999999999999988766 6668999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhcc-CCcEEEEEEccCCCEEEEecCCCC
Q 043707 285 AGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ-ENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 285 ~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+.|. .+++++.|.+.++|+.... .+..+..| ...|..++..++...+++++.||.
T Consensus 226 ~~~n-~i~t~gedctcrvW~~~~~-------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 226 FLPN-RIITVGEDCTCRVWGVNGT-------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred eccc-eeEEeccceEEEEEecccc-------eehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 9988 9999999999999976522 34477777 456999999999999999999984
No 221
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=2.2e-10 Score=107.24 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=124.9
Q ss_pred CcEEEEeCCCcce--eeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeec----cc-----------
Q 043707 143 KNIRVWKNLKEFS--GFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVG----SL----------- 204 (347)
Q Consensus 143 g~I~vwd~~~~~~--~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~----~~----------- 204 (347)
+.+.||++..... ....-...|.|++|+| +...++.|+.+|.|.+||++........... ..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999664422 2223457899999999 7788999999999999999987642111100 00
Q ss_pred -ccccceEEeccCCCeEEEEeeccee----eee----------ecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe---CC
Q 043707 205 -PTFKDYVKSSVNPKNYVEVRRNRNV----LKI----------RHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWR---IS 265 (347)
Q Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwd---l~ 265 (347)
....+++..+.++.......+.-.. ... .-...+++++|.+ +...++.|+.+|.|.-=. .+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 0012344444433333221111100 000 1123477788877 456788888888776622 22
Q ss_pred CC-----EEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC-C
Q 043707 266 DC-----KCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES-A 337 (347)
Q Consensus 266 ~~-----~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~ 337 (347)
.. +.+..+..|.++|.++.++|=+ .|++++ |-+|+||....... ++..+..+...|++++|+|-. .
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-----Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-----PLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-----cchhhhhccceeeeeEEcCcCce
Confidence 11 2233556788999999999865 555555 99999998864333 666777777789999999976 5
Q ss_pred EEEEecCCCC
Q 043707 338 VVYCGSSDGL 347 (347)
Q Consensus 338 ~l~sgs~DG~ 347 (347)
.++++..||.
T Consensus 456 vF~~~d~~G~ 465 (555)
T KOG1587|consen 456 VFATVDGDGN 465 (555)
T ss_pred EEEEEcCCCc
Confidence 6667766773
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.4e-10 Score=105.74 Aligned_cols=161 Identities=7% Similarity=-0.002 Sum_probs=110.4
Q ss_pred cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707 144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.|.++|.. ...+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++.....
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~-------------------- 242 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG-------------------- 242 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------
Confidence 68888854 345567778889999999999999888763 468999999877532111
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~ 295 (347)
.+.+.+...+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+||+ .|+..+
T Consensus 243 -------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 243 -------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred -------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence 2445667889999998765 5555655 77779887654 4455566666778999998 555444
Q ss_pred -CCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 296 -ADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 296 -~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.+| .|++||+.... .+.+..+...+....|+|+|+.|+..+.+
T Consensus 309 ~~~g~~~Iy~~d~~g~~-------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN-------PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred CCCCCCeEEEEECCCCC-------eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 444 57777765321 12222234456778999999999876543
No 223
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.9e-10 Score=104.28 Aligned_cols=172 Identities=16% Similarity=0.220 Sum_probs=132.0
Q ss_pred CCEEEEecCCCcEEEEeCCCc--ceeee---cCCCCeeEEEEe--------------------CCCCEEEEEeCCCcEEE
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE--FSGFK---SNSGLVKAIIIT--------------------GDSNKIFTGHQDGKIRI 187 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~---~h~~~V~~l~~s--------------------p~~~~l~s~~~Dg~I~v 187 (347)
..++|....||.+++|+..+. .+.|. .-.+...+..|. .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 568999999999999995432 22332 223444444442 22345677777788888
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|++..++........ .|.+.|.++.++.+-..|++++.|+.+..|+..+.
T Consensus 85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 888776543322212 49999999999999999999999999999999999
Q ss_pred EEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC-----CCEEEE
Q 043707 268 KCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE-----SAVVYC 341 (347)
Q Consensus 268 ~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~~l~s 341 (347)
+.++.++.....+.+++.+||+ .+++++ ++|++||+++.+ .+..+.+|.++|.+++|.-+ |.++.+
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce------EEEEecCCCcceEEEEEEEeccccccceeee
Confidence 9999999989999999999998 666665 689999998543 68899999999999999877 666655
Q ss_pred e
Q 043707 342 G 342 (347)
Q Consensus 342 g 342 (347)
+
T Consensus 207 s 207 (541)
T KOG4547|consen 207 S 207 (541)
T ss_pred c
Confidence 3
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=1.1e-09 Score=92.44 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=71.1
Q ss_pred eeeecCCCCeeEEEEeCCCCEEEEEeCCCc-EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707 155 SGFKSNSGLVKAIIITGDSNKIFTGHQDGK-IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233 (347)
Q Consensus 155 ~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (347)
..+.+|...|.|++.+-+|..+||++..|+ |||||..++....+.+-+.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------------------------ 224 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------------------------ 224 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------------------------
Confidence 446789999999999999999999999998 8999999998665554332
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
....|.||+|+|+..+|+++|+.|+++|+.++.
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 446799999999999999999999999999875
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.7e-10 Score=102.93 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=116.9
Q ss_pred eEeeeeccccEEEEe--ecCCEEEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEE
Q 043707 116 IGSIVRKEGHIYSLA--ASGDLLYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIR 186 (347)
Q Consensus 116 i~~l~~h~~~V~~l~--~~~~~l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~ 186 (347)
...+..|...+.+.. ++|+.|+..+. +..|++||.... ...+..+.+...+.+|+|+|+.|+ +.+.+| .|+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 344555555666555 46777776653 346999996533 233344455566889999998775 555565 588
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEe
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKT--LKVWR 263 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~--i~vwd 263 (347)
+||+.+++..... .+.......+|+|+++.|+..+. +|. |+++|
T Consensus 276 ~~d~~~g~~~~lt---------------------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 276 VMDLGSRQLTRLT---------------------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred EEECCCCCeEECc---------------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 9998876521110 13334456899999998877664 454 66677
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC-CC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA-DG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~-dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
+.+++.. .+..+........|+|++ +|+..+. ++ .|.+||+..+.. ..+. +........|+|||++|
T Consensus 323 l~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 323 ASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------RTLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred CCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------EECC-CCCCCCCceECCCCCEE
Confidence 7666532 333333445568999998 5554433 32 689999864331 1121 22234567999999988
Q ss_pred EEecCC
Q 043707 340 YCGSSD 345 (347)
Q Consensus 340 ~sgs~D 345 (347)
+..+.+
T Consensus 394 ~~~s~~ 399 (433)
T PRK04922 394 LYATRE 399 (433)
T ss_pred EEEEec
Confidence 877654
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8e-10 Score=102.90 Aligned_cols=190 Identities=15% Similarity=0.078 Sum_probs=114.9
Q ss_pred EeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEe
Q 043707 117 GSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWK 189 (347)
Q Consensus 117 ~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd 189 (347)
..+..+...+.+.. ++|+.|+..+.+ ..|++||.... ...+....+.+.+.+|+|||+.|+ +.+.+|...||.
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 33445556666555 467777765532 35999997533 233443445677899999998876 567788877776
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC--CC
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRI--SD 266 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl--~~ 266 (347)
++...... ..+. .+...+....|+|||+.|+..+. +|...||.+ ..
T Consensus 269 ~d~~~~~~-~~lt------------------------------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 269 VNADGSGL-RRLT------------------------------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EECCCCCc-EECC------------------------------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 54321111 1110 13334556789999998776554 566666654 44
Q ss_pred CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
++. ..+..+........|+|+| +|+..+.++ .|.+||+..+.. ..+.. ........|+|||+.|+.+
T Consensus 318 g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~~lt~-~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 318 GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------TALTD-TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------EEccC-CCCccCceECCCCCEEEEE
Confidence 432 2222233334467899998 665554443 699999875432 11111 1234678999999998887
Q ss_pred cCCC
Q 043707 343 SSDG 346 (347)
Q Consensus 343 s~DG 346 (347)
+.++
T Consensus 389 ~~~~ 392 (427)
T PRK02889 389 TQQG 392 (427)
T ss_pred EecC
Confidence 7654
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.4e-11 Score=106.61 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=146.1
Q ss_pred ceeEeeeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeC--CCCEEEEEeCCCcEE
Q 043707 114 GLIGSIVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITG--DSNKIFTGHQDGKIR 186 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp--~~~~l~s~~~Dg~I~ 186 (347)
.+...|..|.|-|..+.++ |+.|++|+.|..|.+||+... +.-..+|...|..-.|-| +.+-|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3677888999999999986 889999999999999996544 334456888888888988 446799999999999
Q ss_pred EEecCCCCCce-eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 043707 187 IWKVSRKNPSV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 187 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl 264 (347)
+=.+....... .+.+ ..|.+.|..++.-|+ ...|++++.|+.+.-+|+
T Consensus 213 ~s~i~~t~~~e~t~rl------------------------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 213 VSEILETGYVENTKRL------------------------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred eeeeccccceecceec------------------------------ccccCccceeeecCCCCCcccccccccceeeeee
Confidence 88765433221 2222 249999999999996 567999999999999999
Q ss_pred CCCEEEEEE---ecCCC---cEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCcccee-----eehhhhh-ccCCcEEEE
Q 043707 265 SDCKCLESI---NAHDD---AINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKH-----FLAQVLL-KQENAITAL 330 (347)
Q Consensus 265 ~~~~~~~~~---~~h~~---~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~-----~~~~~~~-~h~~~V~~l 330 (347)
+...+-..+ +.+.. ....|+..|.. .+++|+.|-.+++||.+.-.+.... .+...+. .....|+++
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 987654333 33444 56788888865 8999999999999999854432111 1111221 223469999
Q ss_pred EEccCC-CEEEEec
Q 043707 331 AVNQES-AVVYCGS 343 (347)
Q Consensus 331 ~~~p~~-~~l~sgs 343 (347)
+|+.++ .+|++-.
T Consensus 343 ~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 343 VYSHDGSELLASYN 356 (559)
T ss_pred EecCCccceeeeec
Confidence 999766 5555543
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.8e-09 Score=100.93 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=120.9
Q ss_pred eEeeeeccccEEEEee--cCCEEEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCCc--EE
Q 043707 116 IGSIVRKEGHIYSLAA--SGDLLYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDGK--IR 186 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~--~~~~l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~--I~ 186 (347)
...+..|...+.+..| +|+.|+..+. +..|++||.... ...+..+.+.+...+|+|+|+.|+ +.+.++. |.
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 4456667777777664 6777766542 468999997533 344555667788999999998765 5566665 66
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEe
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWR 263 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwd 263 (347)
+||+.++.... +. .+........|+||++.|+..+. +| .|++||
T Consensus 274 ~~d~~~~~~~~---Lt------------------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 274 TMDLRSGTTTR---LT------------------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred EEECCCCceEE---cc------------------------------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 67877654211 11 13444567899999998887664 33 588888
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC-C--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA-D--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~-d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
+..++. ..+..+...+....|+|++ .|+.... . ..|.+||+..... ..+. ....+..+.|+|||+.|
T Consensus 321 ~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------~~lt-~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 321 ADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------RILT-SGFLVEGPTWAPNGRVI 391 (435)
T ss_pred CCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------Eecc-CCCCCCCCeECCCCCEE
Confidence 876544 3444345556778899998 5554433 2 3677788743221 1111 12246788999999988
Q ss_pred EEecCC
Q 043707 340 YCGSSD 345 (347)
Q Consensus 340 ~sgs~D 345 (347)
+..+.+
T Consensus 392 ~~~~~~ 397 (435)
T PRK05137 392 MFFRQT 397 (435)
T ss_pred EEEEcc
Confidence 776543
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.3e-09 Score=101.40 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=106.1
Q ss_pred cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707 144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.|.+||.. ...+.+..+...+...+|+|||+.|+..+. +..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence 68888854 344555666778999999999999886542 3579999998765321111
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS 295 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~ 295 (347)
....+..+.|+|||+.|+.. +.+| .|++||+.+++... +..+...+....|+||+ .|+..+
T Consensus 241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe
Confidence 22234468999999987754 4455 48899998876543 44444567788999998 555444
Q ss_pred -CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 296 -ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 296 -~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.++...||.+...+. ....+..+........|+|||++|+..+.+
T Consensus 306 ~~~g~~~Iy~~d~~~g-----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 306 DQAGRPQVYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCCCCceEEEEECCCC-----CeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 455666665443222 111222233445678999999998876543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.9e-10 Score=103.79 Aligned_cols=174 Identities=10% Similarity=0.074 Sum_probs=109.8
Q ss_pred CCEEEEecCC--CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeeccccc
Q 043707 133 GDLLYTGSDS--KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 133 ~~~l~tg~~d--g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~ 206 (347)
+++.+..... ..|.++|.. ...+.+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++.....
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------- 236 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------- 236 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-------
Confidence 4444443332 356666753 3345556677889999999999998877643 35999999877532111
Q ss_pred ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEe--CCCCEEEEEEecCCCcEEEE
Q 043707 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWR--ISDCKCLESINAHDDAINSV 283 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwd--l~~~~~~~~~~~h~~~v~~i 283 (347)
.....+...+|+||++.|+ +.+.+|...||. +..+ .+..+..+.......
T Consensus 237 --------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~ 289 (427)
T PRK02889 237 --------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEP 289 (427)
T ss_pred --------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCe
Confidence 1234456789999998776 567788766665 4443 345555555556678
Q ss_pred EeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 284 VAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 284 ~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.|+||| .|+ ++..+|...||.+...+... ..+..+.......+|+|+|++|+..+.+
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-----QRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCce-----EEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 899998 454 44456777888765332211 1111112234467899999999877654
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=4.9e-10 Score=93.53 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=118.7
Q ss_pred CC-EEEEecCCCcEEEEeCCCc-----ceeeecCC---CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707 133 GD-LLYTGSDSKNIRVWKNLKE-----FSGFKSNS---GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS 203 (347)
Q Consensus 133 ~~-~l~tg~~dg~I~vwd~~~~-----~~~~~~h~---~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~ 203 (347)
|+ .|+-+..+|.|.++..... +..+..-. ....++.|++.+..++++-.+|.+.+-+........
T Consensus 84 g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~------ 157 (339)
T KOG0280|consen 84 GDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK------ 157 (339)
T ss_pred ccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee------
Confidence 55 6777788899999974322 11222211 124577899988899999999998855443332111
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCEEEEE-EecCCCcE
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS-DCKCLES-INAHDDAI 280 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~-~~~~~~~-~~~h~~~v 280 (347)
...+..|..+++...|+. +.+++++|+.|+.+..||+| .++.+.. .+.|...|
T Consensus 158 ------------------------vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV 213 (339)
T KOG0280|consen 158 ------------------------VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV 213 (339)
T ss_pred ------------------------cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence 112235888888888886 45799999999999999999 3444544 56789999
Q ss_pred EEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 281 NSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 281 ~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
.+|..+|.. +|++|+.|..|++||.+..++ ++.. ..-.+.|+.++++|.-
T Consensus 214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~-~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 214 VSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-----PLFK-AKVGGGVWRIKHHPEI 265 (339)
T ss_pred EEEecCCCCCceEEEeccccceeeeehhcccC-----cccc-CccccceEEEEecchh
Confidence 999988763 999999999999999997665 2221 1124789999998853
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.21 E-value=2.8e-09 Score=99.23 Aligned_cols=188 Identities=16% Similarity=0.091 Sum_probs=118.1
Q ss_pred EeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEEE
Q 043707 117 GSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIRI 187 (347)
Q Consensus 117 ~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~v 187 (347)
..+..+...+.... ++|++|+.+..+ ..|++||.... ...+..+.+.+.+++|+|+++.|+ +...++ .|++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 34444554555544 467777766543 47999997643 344455666777899999998776 444444 5888
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRI 264 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl 264 (347)
||+.++...... .+........|+|+++.|+..+. ++ .|+++|+
T Consensus 263 ~d~~~~~~~~l~---------------------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 263 MDLDGKQLTRLT---------------------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred EECCCCCEEECC---------------------------------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 888765421110 13333446789999988876654 33 5788888
Q ss_pred CCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCC---cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707 265 SDCKCLESINAHDDAINSVVAGFDS-LVFTGSADG---TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~ 340 (347)
.+++. ..+..+...+....|+|++ +|+.+..++ .|.+||+..... ..+... .......|+|++++|+
T Consensus 310 ~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 310 DGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------RVLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred CCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------EEccCC-CCCCCceECCCCCEEE
Confidence 77654 3444455667788999998 666666554 788888764221 111111 1234568999999888
Q ss_pred EecCCC
Q 043707 341 CGSSDG 346 (347)
Q Consensus 341 sgs~DG 346 (347)
..+.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 877654
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.1e-10 Score=101.78 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=131.9
Q ss_pred cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707 132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
+.++++.|+. ..|+-+++.+ -+..+....+.+++|.+++...+|++|+.||.|..||.+.+...........-.
T Consensus 145 scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--- 220 (703)
T KOG2321|consen 145 SCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--- 220 (703)
T ss_pred CccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccC---
Confidence 3455555554 4567676553 366777778999999999987899999999999999999886544333221100
Q ss_pred eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCCC
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFD 288 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~~ 288 (347)
..........|+.+.|+.+|-.+++|..+|.+.|||++..+++..-. ...-+|..+.|.+.
T Consensus 221 ------------------s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 221 ------------------SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred ------------------CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 00000123359999999999999999999999999999998876543 34567889999765
Q ss_pred C--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 289 S--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 289 ~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+ --+.......++|||-.++.. .. .......++.+|+-|++.++.++-.++
T Consensus 283 ~~q~~v~S~Dk~~~kiWd~~~Gk~------~a-siEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 283 DQQNKVVSMDKRILKIWDECTGKP------MA-SIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred CCCceEEecchHHhhhcccccCCc------ee-eccccCCcCceeeecCCceEEEecCCC
Confidence 2 334444667899999876542 11 122344699999999999998886653
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=3.1e-10 Score=94.70 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=129.2
Q ss_pred ecCCEEEEecCCCcEEEEe----CCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccc
Q 043707 131 ASGDLLYTGSDSKNIRVWK----NLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 131 ~~~~~l~tg~~dg~I~vwd----~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
..+..++++..+|.+.+-+ ..+..+.++.|.-+.+-..|+- +.+.+++|+.|+.+..||++..+.-.....
T Consensus 131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~---- 206 (339)
T KOG0280|consen 131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS---- 206 (339)
T ss_pred ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc----
Confidence 3477899999999998443 2244667889999999999976 557999999999999999983321111000
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCEEEEEEecCCCcEEEE
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSV 283 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~-~~~~~~~~~~h~~~v~~i 283 (347)
..|...|.+|.-+| .+.++++|+.|-.|++||.| -++++..-+ -.+.|+.+
T Consensus 207 --------------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi 259 (339)
T KOG0280|consen 207 --------------------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRI 259 (339)
T ss_pred --------------------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEE
Confidence 13888899998877 57899999999999999999 567776554 34789999
Q ss_pred EeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 284 VAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 284 ~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.++|.- .++.++.-+-.+|-+....... -.........|.+-+..-.|.....+|++|+
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccc-hheeeeccccccceeeccccccccceeeeee
Confidence 999964 5555555566788877643321 1123344456776777777755556777765
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=115.66 Aligned_cols=211 Identities=17% Similarity=0.270 Sum_probs=137.1
Q ss_pred eeeccccEEEEeec--CCEEEEecCCCcEEEEeCCCc--ceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 119 IVRKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE--FSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 119 l~~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~--~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
++.+-..|.++... .-+.+||+.||.|++|..... +..++ .-...|+.+.|+.+|+.+..+..||.+.+|.+..+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 34445567777643 458899999999999986533 33332 22378999999999999999999999999998733
Q ss_pred CCceeeeecccccccceE-------Eec-cCCCeEEEEe-----ecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 043707 194 NPSVHKRVGSLPTFKDYV-------KSS-VNPKNYVEVR-----RNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLK 260 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 260 (347)
-....+. ......++. ... ...+.-+.++ .....+...|.+.++|+++.|...+|++|+.+|.|+
T Consensus 2284 ~~~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 2111000 000111111 011 1111111111 112223357999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhh---ccCCc--E--EEEEEc
Q 043707 261 VWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLL---KQENA--I--TALAVN 333 (347)
Q Consensus 261 vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~---~h~~~--V--~~l~~~ 333 (347)
+||++..+.++.++. +....+|++|+..|.|+||++...+. ++.+. +|++- + ..+-.
T Consensus 2362 l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~l------l~~~p~e~ak~gfFr~~g~Q~~v- 2425 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGL------LHTFPSEHAKQGFFRNIGMQINV- 2425 (2439)
T ss_pred EeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEccccch------hhcCchhhcccchhhhcCceeee-
Confidence 999999888877765 44456999999999999999974332 21111 12211 1 12222
Q ss_pred cCCCEEEEecCCCC
Q 043707 334 QESAVVYCGSSDGL 347 (347)
Q Consensus 334 p~~~~l~sgs~DG~ 347 (347)
-.+..|.+|+.||+
T Consensus 2426 ~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQCNRIFSCGADGT 2439 (2439)
T ss_pred ccCceEEEecCCCC
Confidence 23577889999985
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.2e-09 Score=98.10 Aligned_cols=186 Identities=13% Similarity=0.031 Sum_probs=113.3
Q ss_pred eeeccccEEEEe--ecCCEEEEec---CCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEE-eCCC--cEEEEe
Q 043707 119 IVRKEGHIYSLA--ASGDLLYTGS---DSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTG-HQDG--KIRIWK 189 (347)
Q Consensus 119 l~~h~~~V~~l~--~~~~~l~tg~---~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~-~~Dg--~I~vwd 189 (347)
+..+...+.... ++|+.|+..+ .+..|++|+.... ...+....+.+..++|+|||++|+.. ..+| .|.+||
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 333444555554 4677776543 3457888886532 22223333445678999999988754 4455 488889
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCC
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKT--LKVWRISD 266 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~--i~vwdl~~ 266 (347)
+.+++..... .+...+....|+|+++.|+..+. ++. |.++|+.+
T Consensus 274 ~~tg~~~~lt---------------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 274 LASGQIRQVT---------------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCCCCEEEcc---------------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 8776421111 13345678899999998876665 344 44456666
Q ss_pred CEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CC--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 267 CKCLESINAHDDAINSVVAGFDS-LVFTGS-AD--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
++. ..+..+........|+||| +|+..+ .+ ..|.+||+..+.. ..+... .......|+|||++|+.+
T Consensus 321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~Lt~~-~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVLTDT-FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------EEeCCC-CCCCCceECCCCCEEEEE
Confidence 543 3444444455678899998 555443 33 3588888864431 111111 123467899999999998
Q ss_pred cCCC
Q 043707 343 SSDG 346 (347)
Q Consensus 343 s~DG 346 (347)
+.||
T Consensus 392 s~~~ 395 (429)
T PRK03629 392 SSQG 395 (429)
T ss_pred EcCC
Confidence 8876
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.1e-09 Score=102.32 Aligned_cols=162 Identities=11% Similarity=0.010 Sum_probs=106.2
Q ss_pred CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK 218 (347)
Q Consensus 143 g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
..|.+||.. ...+.+..+...+...+|+|+|+.|+..+.+ ..|.+||+.+++.....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------- 244 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------- 244 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------
Confidence 358888854 3455666777889999999999999887743 46999999876532111
Q ss_pred eEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707 219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG 294 (347)
Q Consensus 219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~ 294 (347)
.......+++|+|+++.|+ +.+.+| .|++||+.+++. ..+..+........|+||+ .|+..
T Consensus 245 --------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 245 --------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred --------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEE
Confidence 1233345789999998765 455555 599999988764 3455555555678999998 55544
Q ss_pred e-CCCc--EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 295 S-ADGT--VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 295 ~-~dg~--I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
+ .+|. |.++++..+. ...+..+......++|+|+|++|+..+.+
T Consensus 310 sd~~g~~~iy~~dl~~g~-------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGS-------AERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred ECCCCCceEEEEECCCCC-------eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 4 4555 4445554221 11111222344578999999998876543
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=2.2e-10 Score=97.02 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=132.9
Q ss_pred CCCCCCCcccccccceeEeeee------cc-----ccEEEEeec--C-CEEEEecCCCcEEEEeCCCc--ceeeecCCCC
Q 043707 100 PPYSPNENLLSSCNGLIGSIVR------KE-----GHIYSLAAS--G-DLLYTGSDSKNIRVWKNLKE--FSGFKSNSGL 163 (347)
Q Consensus 100 ~~~~p~~~~~~~~~~~i~~l~~------h~-----~~V~~l~~~--~-~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~ 163 (347)
..|+|+|+.++++...--.++. |. ..|.-+.|. . ..|.....++.|.+|++.+. ...++.-...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 4789999999887764222221 11 223334443 2 25667788999999997654 3455566678
Q ss_pred eeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707 164 VKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242 (347)
Q Consensus 164 V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 242 (347)
+..++|+|+|+. |.+...|-.|.||.+.+.+...... -...+..++
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~---------------------------------pK~~~kg~~ 140 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH---------------------------------PKTNVKGYA 140 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc---------------------------------cccCceeEE
Confidence 999999999965 5566678899999998875322211 223467899
Q ss_pred EcCCCCEEEEEeCC-C--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707 243 LNAEQGLLYSGSWD-K--TLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV 319 (347)
Q Consensus 243 ~~~~~~~l~s~s~d-g--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~ 319 (347)
|+++|++.+..++- . .+.|........++.++...-..+.|.|+||| +.+.|||--.+.+ .
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--------~~laVwd~~Leyk--------v 204 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--------NWLAVWDNVLEYK--------V 204 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--------cEEEEecchhhhe--------e
Confidence 99999999888752 1 12233233344566666666678889999997 2345677642221 1
Q ss_pred hhcc-CCcEEEEEEccCCCEEEEecCCCC
Q 043707 320 LLKQ-ENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 320 ~~~h-~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
+.-| .-.+..++|+|.+++|+.|+.||+
T Consensus 205 ~aYe~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 205 YAYERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred eeeeeccceeEEEeccccceEEeeccchh
Confidence 1122 357899999999999999999974
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=9e-09 Score=93.40 Aligned_cols=170 Identities=10% Similarity=0.121 Sum_probs=112.2
Q ss_pred EEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEe
Q 043707 136 LYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS 213 (347)
Q Consensus 136 l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 213 (347)
+++-..++.|.|.|.. +.+..+......-..+.++|||+++++++.||.|.++|+.+.+......
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~------------- 75 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK------------- 75 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------
Confidence 4566778999999965 4456666544444457899999999999999999999999987544433
Q ss_pred ccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC-------CCcEEEEEe
Q 043707 214 SVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLESINAH-------DDAINSVVA 285 (347)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h-------~~~v~~i~~ 285 (347)
.......+++++||++++++. .++.+.|+|.++.+.++.+... ...+..|..
T Consensus 76 --------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~ 135 (369)
T PF02239_consen 76 --------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA 135 (369)
T ss_dssp ---------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred --------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe
Confidence 334567899999999999876 5899999999999999988643 245677877
Q ss_pred CCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 286 GFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 286 ~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
++.. ++++.-.-+.|.+-|...... +............+..|+|++++++.+.
T Consensus 136 s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 136 SPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp -SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred cCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecc
Confidence 7765 444455558887778764322 1112222344677899999999887753
No 240
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=8.7e-10 Score=92.83 Aligned_cols=221 Identities=18% Similarity=0.284 Sum_probs=141.6
Q ss_pred ccccEEEEeec--CCEEEEecCCCcEEEEeCCC-------cceeeecCC------------CCeeEEEEeCCC--CEEEE
Q 043707 122 KEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLK-------EFSGFKSNS------------GLVKAIIITGDS--NKIFT 178 (347)
Q Consensus 122 h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~-------~~~~~~~h~------------~~V~~l~~sp~~--~~l~s 178 (347)
....|+++.++ |.+|++|...|.|.+|...+ -+..|++|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568888886 77999999999999997332 234566664 347888887644 36788
Q ss_pred EeCCCcEEEEecCCCCCceeeee-----------cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC
Q 043707 179 GHQDGKIRIWKVSRKNPSVHKRV-----------GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ 247 (347)
Q Consensus 179 ~~~Dg~I~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 247 (347)
.+.|.+|++|.+..+........ +.+.....+..........+......++..-.|...|.+++|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88899999999987643211110 0011111121112222222222333334445688999999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCE---EEEEEecCC-----CcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccce----
Q 043707 248 GLLYSGSWDKTLKVWRISDCK---CLESINAHD-----DAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK---- 313 (347)
Q Consensus 248 ~~l~s~s~dg~i~vwdl~~~~---~~~~~~~h~-----~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~---- 313 (347)
..++++. |-.|.+|.+.-.. .+..++.|. .-|++..|+|.. .+.-.+..|.|++-|++.......
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888775 7889999986432 334445553 357888999975 677778899999999984321100
Q ss_pred ------eeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 314 ------HFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 314 ------~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..-...+.+-...|.++.|+++|++|++-.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 000111223345789999999999998743
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=1.4e-08 Score=94.55 Aligned_cols=163 Identities=8% Similarity=-0.016 Sum_probs=107.6
Q ss_pred CcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707 143 KNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK 218 (347)
Q Consensus 143 g~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
..|.++|.. ...+.+..+...+...+|+|+|++|+.+..+ ..|++||+.+++.....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------- 230 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------- 230 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-------------------
Confidence 357777754 4455566677789999999999999887654 47999999876422111
Q ss_pred eEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707 219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTG 294 (347)
Q Consensus 219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~ 294 (347)
.+...+.+++|+|+++.|+ +.+.++ .|++||+.+++. ..+..+........|+|++ .|+..
T Consensus 231 --------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~ 295 (417)
T TIGR02800 231 --------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFT 295 (417)
T ss_pred --------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEE
Confidence 1344566789999998765 444444 588899987654 3344454445567899987 55544
Q ss_pred -eCCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 295 -SADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 295 -~~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..++ .|.++|+.... ...+..+...+..+.|+|++++|+.++.++
T Consensus 296 s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred ECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 3444 46666665321 122333445677889999999998877653
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=2.6e-08 Score=90.43 Aligned_cols=222 Identities=19% Similarity=0.216 Sum_probs=137.9
Q ss_pred eeEeeeeccccEEEE--eecCC-EEEEecCCCcEEEEeCCCcceeeecCCC--CeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 115 LIGSIVRKEGHIYSL--AASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSG--LVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l--~~~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
+|..+ .|...-+.+ .++|+ ++++|..--.|++||+.+....|.-|.. .|.-.-.+.|-..++--..|.+|-+--
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 34443 344444444 46787 5778888889999998887766766643 344444455656666667777776532
Q ss_pred cCCCC-----CceeeeecccccccceE-EeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707 190 VSRKN-----PSVHKRVGSLPTFKDYV-KSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVW 262 (347)
Q Consensus 190 ~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~vw 262 (347)
.-... +.....+......++++ ........-+.+..+.-...+. ....++++..++-..+|++|+.+|.+-.|
T Consensus 123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 21110 00001111111112222 2222222333444333333223 34789999999999999999999999999
Q ss_pred eCCCCEEEEEEec------CCC-----cEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707 263 RISDCKCLESINA------HDD-----AINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 263 dl~~~~~~~~~~~------h~~-----~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l 330 (347)
|.++...+.++.. |.+ .|+++.|..+| .+++|..+|.|.|||++.... +...-....-+|..+
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLVKDHGYELPIKKL 277 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eeecccCCccceeee
Confidence 9998766665542 222 49999999888 899999999999999995432 333333345689999
Q ss_pred EEccC--CCEEEEe
Q 043707 331 AVNQE--SAVVYCG 342 (347)
Q Consensus 331 ~~~p~--~~~l~sg 342 (347)
.|.+. +..|++.
T Consensus 278 ~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSM 291 (703)
T ss_pred cccccCCCceEEec
Confidence 99775 3556554
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.04 E-value=2e-07 Score=84.68 Aligned_cols=224 Identities=13% Similarity=0.201 Sum_probs=125.1
Q ss_pred ceeEeeeeccc-cE-EEEeecCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEE
Q 043707 114 GLIGSIVRKEG-HI-YSLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIW 188 (347)
Q Consensus 114 ~~i~~l~~h~~-~V-~~l~~~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vw 188 (347)
+.+..+....+ ++ ..+.++|+++++++.||.|.++|+.. .+..++. .....+++++++|++++++. .++.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 45666655433 22 33557789999999999999999653 3445443 34578899999999988775 68999999
Q ss_pred ecCCCCCceeeeecccc---------------cccceEEeccCCCeEEEEeecc----eeeeeecCCCeeEEEEcCCCCE
Q 043707 189 KVSRKNPSVHKRVGSLP---------------TFKDYVKSSVNPKNYVEVRRNR----NVLKIRHYDAVSCLSLNAEQGL 249 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~~~~ 249 (347)
|.++.+..........+ ....++....+...++.+.... ....+..........|.|++++
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 99988765544333221 1122233333333333332111 1123334455677889999998
Q ss_pred EEEE-eCCCcEEEEeCCCCEEEEEEe------------------------------------------------------
Q 043707 250 LYSG-SWDKTLKVWRISDCKCLESIN------------------------------------------------------ 274 (347)
Q Consensus 250 l~s~-s~dg~i~vwdl~~~~~~~~~~------------------------------------------------------ 274 (347)
++.+ ..+..|-++|.++++.+..+.
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 7775 446788889988776544321
Q ss_pred -cCCCcEEEEEeCCCC-EEEEE----eCCCcEEEEEcccCCccceeeehhhhh-ccCCcEEEEEEccCCCEEEEecCC
Q 043707 275 -AHDDAINSVVAGFDS-LVFTG----SADGTVKVWRRELQGKGTKHFLAQVLL-KQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 275 -~h~~~v~~i~~~~~~-~l~s~----~~dg~I~vwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
..... .-+..+|++ ++.+. ...++|.|+|.++.+ ....+. .....+..+.|+++|+.+..+..|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWD 336 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE-
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc------eeEEEeccCCCcEeccEECCCCCEEEEEEec
Confidence 11111 234457776 66655 456899999998653 222332 223359999999999988776544
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=5.8e-08 Score=90.76 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=110.2
Q ss_pred eEeeeeccccEEEEe--ecCCEEEEecCC---CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEE-EEeCCC--cEE
Q 043707 116 IGSIVRKEGHIYSLA--ASGDLLYTGSDS---KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIF-TGHQDG--KIR 186 (347)
Q Consensus 116 i~~l~~h~~~V~~l~--~~~~~l~tg~~d---g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg--~I~ 186 (347)
...+..+...+.... ++|+.|+..+.+ ..|++|+.... .+.+....+.+...+|+|+|++|+ +...+| .|.
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 344445566666544 567777655432 36888886532 233333344566789999998876 455555 577
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEe
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWR 263 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwd 263 (347)
+||+.+++... +. .+........|+|+++.|+..+. +| .|+++|
T Consensus 271 ~~d~~~~~~~~---lt------------------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 271 VMDLASRQLSR---VT------------------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred EEECCCCCeEE---cc------------------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 88887764211 10 13334456789999987766553 33 577788
Q ss_pred CCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEE
Q 043707 264 ISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVV 339 (347)
Q Consensus 264 l~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 339 (347)
+.+++... +...........|+|++ .|+... .++ .|.+||+..+.. ..+.. ........|+|+|+.|
T Consensus 318 ~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~----~~~~~~p~~spdg~~i 388 (430)
T PRK00178 318 VNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----RILTD----TSLDESPSVAPNGTML 388 (430)
T ss_pred CCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE----EEccC----CCCCCCceECCCCCEE
Confidence 87776432 22222233456899998 554443 344 577788764321 11111 1122256899999988
Q ss_pred EEecCC
Q 043707 340 YCGSSD 345 (347)
Q Consensus 340 ~sgs~D 345 (347)
+..+.+
T Consensus 389 ~~~~~~ 394 (430)
T PRK00178 389 IYATRQ 394 (430)
T ss_pred EEEEec
Confidence 876654
No 245
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=8.9e-10 Score=93.98 Aligned_cols=167 Identities=17% Similarity=0.237 Sum_probs=120.7
Q ss_pred CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK 212 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
+-. ++.+.+-.|-+-+..+.....-...+.|.+++|...++.++.|+..|.|.+.|++.+......
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~------------- 290 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW------------- 290 (425)
T ss_pred eee-ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc-------------
Confidence 334 444556678888877665554446788999999998889999999999999999987432111
Q ss_pred eccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEE---EEEEecCCCcEEEEEe--C
Q 043707 213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC---LESINAHDDAINSVVA--G 286 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~---~~~~~~h~~~v~~i~~--~ 286 (347)
....+-|...|+++..-. ++.+|++.+.+|+|++||++.-++ +.++.+|...-.-+-+ .
T Consensus 291 ---------------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 291 ---------------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred ---------------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence 111223999999998766 788999999999999999998888 8888888654333333 2
Q ss_pred C-CCEEEEEeCCCcEEEEEcccCCccceeeehhhh----hccCCcEEEEEEcc
Q 043707 287 F-DSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL----LKQENAITALAVNQ 334 (347)
Q Consensus 287 ~-~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~~p 334 (347)
+ +|.+++++.|...+||.++.+. +..++ ...+..+..++|..
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~gh------Ll~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSGH------LLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cccceEEEccCeeEEEEEecccCc------eeeccCCCCccccccccceehhc
Confidence 3 3589999999999999998543 22222 22344566777754
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=5.2e-08 Score=91.22 Aligned_cols=161 Identities=9% Similarity=-0.028 Sum_probs=99.3
Q ss_pred cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC-C--cEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707 144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD-G--KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.|.++|.. ...+.+..+...+....|+|||++|+..+.+ + .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------------------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------------------- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-------------------
Confidence 56666743 3345555667788999999999988876543 3 58888887764311110
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EE-EEE
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG 294 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~ 294 (347)
........+|+||++.|+. .+.++. |+++|+.+++. ..+..+........|+||+ .| ++.
T Consensus 260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence 1122346799999997764 566665 77888877654 3444455556778999998 44 444
Q ss_pred eCCCcEEEE--EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 295 SADGTVKVW--RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 295 ~~dg~I~vw--d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
..++...+| |+..+.. ..+..........+|+|||++|+..+.+
T Consensus 325 ~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 325 ERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 445554554 5542211 1111122223457899999998876543
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.6e-08 Score=90.39 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=101.0
Q ss_pred cEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCCe
Q 043707 144 NIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 144 ~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.|.++|.. ...+.+..+...+...+|+|+|++|+..+.+ ..|.+||+.+++.....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-------------------- 239 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-------------------- 239 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--------------------
Confidence 36666754 3345566677789999999999998776644 35888999876532111
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EE-EEE
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LV-FTG 294 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l-~s~ 294 (347)
...+.+...+|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+........|+||+ .| ++.
T Consensus 240 -------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 240 -------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred -------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 1223344689999998776 444455 5888899877643 454455556677899997 44 444
Q ss_pred eCCC--cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 295 SADG--TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 295 ~~dg--~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
..++ .|.++++..+.. . .+ .. .........|+|+|+.|+..+.
T Consensus 306 ~~~g~~~iy~~d~~~g~~--~-~l--t~--~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 306 DRGGKPQIYKVNVNGGRA--E-RV--TF--VGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred CCCCCceEEEEECCCCCE--E-Ee--ec--CCCCccceEECCCCCEEEEEEc
Confidence 4444 466666643221 1 11 11 1123345789999999887654
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.7e-08 Score=89.68 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=114.7
Q ss_pred CEEEEecCCCcEEEEeCCCc-c-eee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707 134 DLLYTGSDSKNIRVWKNLKE-F-SGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~~~~-~-~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
..++-|...|.|.+|+.... + ..+ ..|.+.|.++.++.+-..|.+++.|+.+..|+....+......
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--------- 141 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--------- 141 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---------
Confidence 37888999999999985533 2 222 4688999999999988899999999999999998775322221
Q ss_pred eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC-
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD- 288 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~- 288 (347)
.....+..++.+||+..|++++ ++|++||+++.+.+..|.+|.++|+++.|...
T Consensus 142 -----------------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 142 -----------------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred -----------------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 3556788999999999999987 68999999999999999999999999998654
Q ss_pred ----C--EEEEEeCCCcEEEEEcccCC
Q 043707 289 ----S--LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 289 ----~--~l~s~~~dg~I~vwd~~~~~ 309 (347)
| +|.+...+.-|.+|-++...
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cccccceeeeccccccceeEEEEEccc
Confidence 3 44455678889999887543
No 249
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=6.8e-09 Score=85.44 Aligned_cols=194 Identities=19% Similarity=0.258 Sum_probs=116.0
Q ss_pred eeeeccc-cEEEEeec-CCEEEEecCCCcEEEEeCC--------------CcceeeecCCCCeeEEEEeCCCCEEEEEeC
Q 043707 118 SIVRKEG-HIYSLAAS-GDLLYTGSDSKNIRVWKNL--------------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ 181 (347)
Q Consensus 118 ~l~~h~~-~V~~l~~~-~~~l~tg~~dg~I~vwd~~--------------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~ 181 (347)
.+.+|.+ .|..+.+. ...|+++..++.+..+... ..++.+..|+++-.+-+.+--++.++++..
T Consensus 30 ~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 30 EIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred hcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 3334443 24444443 3356676666665555321 223444445444333334444568999999
Q ss_pred CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-----CC
Q 043707 182 DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-----WD 256 (347)
Q Consensus 182 Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-----~d 256 (347)
||.+.+.+.+.... ...++.. .|.+.. ..+....++.+.++. .-
T Consensus 110 dg~~~v~s~~~~~~-~~~~i~~-----------------------------~~~~~a-s~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLA-LMSRIPS-----------------------------IHSGSA-SRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred CceEEEEechHHHh-hhhhccc-----------------------------cccccc-ccceeecccEEecCCcceEeec
Confidence 99999999876221 1111110 011111 111112233333322 12
Q ss_pred CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
+..++|+++..+.+..-+.-...|.+++-+|.. ++++|+.||.+.+||.+.... +...+..|+.+++.+.|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccC
Confidence 346777776554333222223448888888864 888999999999999986543 7788999999999999999
Q ss_pred C-CCEEEEecCCCC
Q 043707 335 E-SAVVYCGSSDGL 347 (347)
Q Consensus 335 ~-~~~l~sgs~DG~ 347 (347)
. +..|.++++||.
T Consensus 234 k~p~~Lft~sedGs 247 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGS 247 (319)
T ss_pred CCchheeEecCCCc
Confidence 5 589999999983
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.6e-07 Score=88.00 Aligned_cols=176 Identities=15% Similarity=0.075 Sum_probs=99.3
Q ss_pred EEeecCCEEEEecC-CC--cEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEE-EeCCCc--EEEEecCCCCCceeee
Q 043707 128 SLAASGDLLYTGSD-SK--NIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFT-GHQDGK--IRIWKVSRKNPSVHKR 200 (347)
Q Consensus 128 ~l~~~~~~l~tg~~-dg--~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s-~~~Dg~--I~vwd~~~~~~~~~~~ 200 (347)
.++++|+.|+..+. ++ .|++||.... ...+....+.....+|+|+|+.|+. ...+|. |.+||+.+++.....
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt- 302 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT- 302 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc-
Confidence 34456777665533 33 5778886432 2223322344557899999997764 566675 667777665421110
Q ss_pred ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCEEEEEEecCC
Q 043707 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRISDCKCLESINAHD 277 (347)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl~~~~~~~~~~~h~ 277 (347)
.+.......+|+||++.|+..+. ++ .|.++|+.+++... +....
T Consensus 303 --------------------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 303 --------------------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred --------------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 13344566899999988766553 34 46667887766433 22222
Q ss_pred CcEEEEEeCCCC-EEE-EEeCCCcEEE--EEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 278 DAINSVVAGFDS-LVF-TGSADGTVKV--WRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 278 ~~v~~i~~~~~~-~l~-s~~~dg~I~v--wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.......|+||+ +|+ +...++...| +|+..+.. .. +... .......|+|+|+.|+..+.+
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~---lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QV---LTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe----EE---ccCC-CCCCCceECCCCCEEEEEEec
Confidence 233456899998 444 4444554555 55543221 11 1111 112245799999888776544
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.94 E-value=1.7e-06 Score=78.36 Aligned_cols=216 Identities=12% Similarity=0.189 Sum_probs=128.1
Q ss_pred EEeecCCEEEEecC----CCcEEEEeCCCc------ceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCC-CC
Q 043707 128 SLAASGDLLYTGSD----SKNIRVWKNLKE------FSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRK-NP 195 (347)
Q Consensus 128 ~l~~~~~~l~tg~~----dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~-~~ 195 (347)
++++++++|++..+ +|.|..|++... +............++++|++++|+++. .+|.|.++++... ..
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l 122 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL 122 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc
Confidence 45567888888766 578888874432 222222344566799999999988887 5899999999874 22
Q ss_pred ceeee---------------------ecccccccceEEeccCCCeEEEEee--cc------eeeeeecCCCeeEEEEcCC
Q 043707 196 SVHKR---------------------VGSLPTFKDYVKSSVNPKNYVEVRR--NR------NVLKIRHYDAVSCLSLNAE 246 (347)
Q Consensus 196 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~h~~~V~~l~~~~~ 246 (347)
..... +...|....++......+.+..... .. ...........+.+.|+|+
T Consensus 123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd 202 (345)
T PF10282_consen 123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD 202 (345)
T ss_dssp EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT
T ss_pred ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC
Confidence 11110 1111222223333333333222222 11 1112334556788999999
Q ss_pred CCEEEEEeC-CCcEEEEeCC--CCE--EEEEEecC------CCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccce
Q 043707 247 QGLLYSGSW-DKTLKVWRIS--DCK--CLESINAH------DDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 247 ~~~l~s~s~-dg~i~vwdl~--~~~--~~~~~~~h------~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~ 313 (347)
++++++..+ +++|.++++. +++ .+..+... ......|.++||+ +|+ +...++.|.+|++..... .
T Consensus 203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g--~ 280 (345)
T PF10282_consen 203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG--T 280 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT--T
T ss_pred cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC--c
Confidence 998877665 7889999988 443 33333321 1257889999998 444 455688999999953221 1
Q ss_pred eeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 314 HFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
................++++|+|++|+++..+
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 12233333334558999999999999988754
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=7e-09 Score=92.24 Aligned_cols=202 Identities=16% Similarity=0.225 Sum_probs=139.9
Q ss_pred eEeeeeccccEEEEee---cCCEEEEecCCCcEEEEeCCCc-----ceeeecCCC---CeeEEEEeC-CCCEEEEEeCCC
Q 043707 116 IGSIVRKEGHIYSLAA---SGDLLYTGSDSKNIRVWKNLKE-----FSGFKSNSG---LVKAIIITG-DSNKIFTGHQDG 183 (347)
Q Consensus 116 i~~l~~h~~~V~~l~~---~~~~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~---~V~~l~~sp-~~~~l~s~~~Dg 183 (347)
.+.+-.|.++|..++. +..-|++++.|+.+.-.|+... +.....+.. ....|+..| +..++++|+.|.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 4456678998877764 4678999999999998885422 222233333 567889999 555899999999
Q ss_pred cEEEEecCCCCCceeeee--cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 043707 184 KIRIWKVSRKNPSVHKRV--GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV 261 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v 261 (347)
.+++||.+.-.......+ ...|. .+.....-.|+|++++.++.-|+++-.|-.|++
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~----------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPH----------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCc----------------------cccccCcccceeEEecCCccceeeeecccceEE
Confidence 999999876543211110 00000 000013456999999988777777777888999
Q ss_pred EeCC--CC----------EEEEE-EecCCC--cEEEEE-eCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccC
Q 043707 262 WRIS--DC----------KCLES-INAHDD--AINSVV-AGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQE 324 (347)
Q Consensus 262 wdl~--~~----------~~~~~-~~~h~~--~v~~i~-~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~ 324 (347)
+.-. .| ..+.. +++|.. .|..+- |.|.. ++++|+.-|.|.||+..+.+ +++.+.+-.
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e------ii~~MegDr 436 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE------IIRFMEGDR 436 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH------HHHHhhccc
Confidence 9532 22 22333 678854 466664 46654 99999999999999987543 677777766
Q ss_pred CcEEEEEEccCCCEEEEecCC
Q 043707 325 NAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 325 ~~V~~l~~~p~~~~l~sgs~D 345 (347)
.-|+||.-+|--..||++|-|
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred ceEeccCCCCCCchhhccCCc
Confidence 699999999999999998876
No 253
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.92 E-value=3.5e-08 Score=96.70 Aligned_cols=165 Identities=13% Similarity=0.216 Sum_probs=114.4
Q ss_pred CcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceee
Q 043707 152 KEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL 230 (347)
Q Consensus 152 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (347)
..+..+..|...|..++.++ ++.+|+||+.||+|++||.+.-....... .....
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~-------------------------rS~lt 1093 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA-------------------------RSELT 1093 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------eeeEE
Confidence 34566778999999999887 45899999999999999987543210000 00111
Q ss_pred eeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--E-----EEEEEecC-CCcEEEE-EeCCC--C-EEEEEeCCC
Q 043707 231 KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC--K-----CLESINAH-DDAINSV-VAGFD--S-LVFTGSADG 298 (347)
Q Consensus 231 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~--~-----~~~~~~~h-~~~v~~i-~~~~~--~-~l~s~~~dg 298 (347)
+..-...+.++.+.+.+..++.++.||.|.+.++... + +......+ .+.+.++ ++... . .|+.+..-+
T Consensus 1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence 1124677899999999999999999999999998752 1 12222222 2334444 33322 3 778888899
Q ss_pred cEEEEEcccCCccceeeehhhh--hccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 299 TVKVWRRELQGKGTKHFLAQVL--LKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 299 ~I~vwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.|..||++.... ...+ ....+.|++++.+|.+.+++.|..-|.
T Consensus 1174 ~iv~~D~r~~~~------~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHD------AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred ceEEecchhhhh------HHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 999999985432 2222 223568999999999999999998773
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=1.5e-07 Score=77.97 Aligned_cols=181 Identities=10% Similarity=0.004 Sum_probs=129.8
Q ss_pred EEEEecCCCcEEEEeCCCcceeeecCCCC--eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee-eecccccccceE
Q 043707 135 LLYTGSDSKNIRVWKNLKEFSGFKSNSGL--VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK-RVGSLPTFKDYV 211 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~ 211 (347)
-+..++.|.++++.++......+..|... +..++++++++++++.+....|..|.++........ ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--------- 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--------- 200 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---------
Confidence 56678888999998876555555556544 889999999999999999999999998765432221 111
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-----EEecCCCcEEEEEeC
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-----SINAHDDAINSVVAG 286 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-----~~~~h~~~v~~i~~~ 286 (347)
...+.=-+.+|+.....+|++..||++.|||+|...... +-..|.+++..+.|+
T Consensus 201 ---------------------~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 201 ---------------------PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS 259 (344)
T ss_pred ---------------------ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence 133445678899999999999999999999998764332 223588999999999
Q ss_pred CCC---EEEEEeCCCcEEEEEcccCCccceee-ehhhhhccCCc-EEEEEEccCCCEEEEecCC
Q 043707 287 FDS---LVFTGSADGTVKVWRRELQGKGTKHF-LAQVLLKQENA-ITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 287 ~~~---~l~s~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~h~~~-V~~l~~~p~~~~l~sgs~D 345 (347)
+.| +|+..-.-+.+.|.|++......... +......|... |..-.|+.++..+.+..++
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 866 77777778899999999765411111 11233445444 8888888887766665543
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=2.7e-07 Score=85.85 Aligned_cols=171 Identities=9% Similarity=-0.041 Sum_probs=96.3
Q ss_pred EecCCCc--EEEEeCCC-cceeeecCCCCeeEEEEeCCCCEEEEEeC-CC----cEEEEecCCCCCceeeeecccccccc
Q 043707 138 TGSDSKN--IRVWKNLK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DG----KIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 138 tg~~dg~--I~vwd~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
+...+|. |++.+... ....+....+.....+|+|||++|+..+. +| .+.+|++..+.......+
T Consensus 204 ~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------- 275 (428)
T PRK01029 204 VSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------- 275 (428)
T ss_pred EEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--------
Confidence 4444444 55556432 22333334455667899999988876553 22 344466654311000000
Q ss_pred eEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEE--eCCC-CEEEEEEecCCCcEEEEEe
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVW--RISD-CKCLESINAHDDAINSVVA 285 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vw--dl~~-~~~~~~~~~h~~~v~~i~~ 285 (347)
...........+|+|||+.|+..+ .+|...|| ++.. +.....+..+...+....|
T Consensus 276 ---------------------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 276 ---------------------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred ---------------------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 001222345679999999777655 46755555 4432 2334445545556778899
Q ss_pred CCCC-EEEEEe-CC--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 286 GFDS-LVFTGS-AD--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 286 ~~~~-~l~s~~-~d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+||| .|+..+ .+ ..|.+||+..+.. ..+......+....|+|||+.|+..+.
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEEC
Confidence 9998 555443 33 4689999875432 122222335678999999998875443
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=2.5e-08 Score=86.85 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=71.0
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~ 310 (347)
.+|-..++.++|+||+++++++..|..|+|-.....-.+..|. +|...|..++.-++..|++|+.|++|++||++.+..
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc
Confidence 3699999999999999999999999999999888777777775 699999999999888999999999999999986543
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.87 E-value=3.1e-07 Score=78.67 Aligned_cols=183 Identities=16% Similarity=0.262 Sum_probs=125.3
Q ss_pred cEEEEeec--CCEEEEecCCCcEEEEeCC------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707 125 HIYSLAAS--GDLLYTGSDSKNIRVWKNL------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS 196 (347)
Q Consensus 125 ~V~~l~~~--~~~l~tg~~dg~I~vwd~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~ 196 (347)
++.++.+. ...|+.|-..|++.-+... ...+....|...|..+.|+....++++.+.|..+.---.+.+...
T Consensus 70 ~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 70 PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred CceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence 45566654 4589999999999888532 335667789999999999998889999999987764444444433
Q ss_pred eeeeecccccccce----EEeccCCC--eEEEEeecc---eeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 197 VHKRVGSLPTFKDY----VKSSVNPK--NYVEVRRNR---NVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 197 ~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
-.......+....+ ...+.... ....+.... ...+.+|.+.+.+++|.+...+|++|..|..+.+||+.-.
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 32222222221111 11111111 111221111 2234579999999999999999999999999999999654
Q ss_pred E-EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707 268 K-CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 268 ~-~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~ 307 (347)
+ ....+.+|...|..+...+-- .+++++.||.|.+|+...
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 4 345667888888888765543 889999999999999873
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=6.7e-07 Score=83.20 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=96.9
Q ss_pred EEeecCCEEEEec-CCC--cE--EEEeCCC----cceeee-cCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC--CC
Q 043707 128 SLAASGDLLYTGS-DSK--NI--RVWKNLK----EFSGFK-SNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR--KN 194 (347)
Q Consensus 128 ~l~~~~~~l~tg~-~dg--~I--~vwd~~~----~~~~~~-~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~--~~ 194 (347)
.++++|+.|+..+ .+| .+ .+|+... ....+. .+.+.....+|+|||+.|+..+ .+|...+|.+.. ..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 3556787666543 233 33 3355332 222222 2223456789999999877665 567666665432 11
Q ss_pred CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCEEEE
Q 043707 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDCKCLE 271 (347)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~~~~~ 271 (347)
.. ...+ ..+...+....|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 317 ~~-~~~l------------------------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 317 QS-PRLL------------------------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred cc-eEEe------------------------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 00 0100 0133456778999999988876543 369999998886543
Q ss_pred EEecCCCcEEEEEeCCCC-EEE-EEeC--CCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 272 SINAHDDAINSVVAGFDS-LVF-TGSA--DGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~-~l~-s~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
+......+....|+||+ .|+ ++.. ...|.+||+..+.. ..+....+.+...+|+|-.
T Consensus 366 -Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-------~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 366 -LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-------RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred -ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEeecCCCcccCceecCCC
Confidence 33233456778999998 443 4433 35677778763321 1222234456677887743
No 259
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.2e-08 Score=86.68 Aligned_cols=224 Identities=14% Similarity=0.170 Sum_probs=160.0
Q ss_pred eccccEEEEeec-CCEEEEecCCCcEEEEeCCC-----cceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCC
Q 043707 121 RKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLK-----EFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRK 193 (347)
Q Consensus 121 ~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~-----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~ 193 (347)
.|.+.|+-+.+. .+++.+++.||.++.|.... -+..+..|-+.|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 377777766654 78999999999999997432 35567788899999999999999999777 999999999988
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecc----------------eeeeeecCCCeeEEEEcCCCCEEEEEeCCC
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNR----------------NVLKIRHYDAVSCLSLNAEQGLLYSGSWDK 257 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 257 (347)
..........+|...+++.+..+....+.+.... .....-|..+|.++.+++.+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 7776677777777776666555443333222111 111224889999999999999999999999
Q ss_pred cEEEEeCCC------CEE---------EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc----------
Q 043707 258 TLKVWRISD------CKC---------LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG---------- 311 (347)
Q Consensus 258 ~i~vwdl~~------~~~---------~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~---------- 311 (347)
-|.-|.... .+. +..+........++.|+|++ .+.+-+.|..|++++..++...
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 999998762 111 11222335567899999998 8888889999999999764320
Q ss_pred ----------------ceeeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707 312 ----------------TKHFLAQVLLKQEN-AITALAVNQESAVVYCGSS 344 (347)
Q Consensus 312 ----------------~~~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~ 344 (347)
......+.+..|.. .-+.+.|...+++|+-|+-
T Consensus 247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~ 296 (558)
T KOG0882|consen 247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI 296 (558)
T ss_pred hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc
Confidence 00011123344543 3467888888888887653
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.80 E-value=1.3e-07 Score=80.85 Aligned_cols=224 Identities=15% Similarity=0.263 Sum_probs=137.6
Q ss_pred eeEeeeeccccEEEEe--ecCCEEEEecCCCcEEEEeCC---Ccce-eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 115 LIGSIVRKEGHIYSLA--ASGDLLYTGSDSKNIRVWKNL---KEFS-GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~--~~~~~l~tg~~dg~I~vwd~~---~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
++..+.+|.+.|++.. +-..-+++.+.|.++|||-.. +... .......++.++.+.++...|+.|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4667778888887654 456678999999999999532 2211 122234689999999999999999999998877
Q ss_pred ecCCCCC--ceee----------eecccccccceEEeccCCCeEEEEeecceeeeeec---CCCeeEEEEcCCCCEEEEE
Q 043707 189 KVSRKNP--SVHK----------RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRH---YDAVSCLSLNAEQGLLYSG 253 (347)
Q Consensus 189 d~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~ 253 (347)
-+...-. .... .+.......-++....+....+...+.... ++| ....+++.+.- .+.+.|
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~~~~~t~~~~d~--~~~fvG 171 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNFETPASALQFDA--LYAFVG 171 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceEeeccCCCCceee--EEEEec
Confidence 6543210 0000 000000000011111111111111110000 000 00111111111 155566
Q ss_pred eCCCcEEEEeCC--CCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEE
Q 043707 254 SWDKTLKVWRIS--DCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITAL 330 (347)
Q Consensus 254 s~dg~i~vwdl~--~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l 330 (347)
...|.|.+-.+. .-.++.++++|.+.+.++.|.+.. .+++|..|..|.+||+-.... ....+.+|...|..+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TAYELQGHNDKVQAL 246 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----eeeeeccchhhhhhh
Confidence 666666665543 345788899999999999998864 999999999999999964332 456678899999999
Q ss_pred EEccCCCEEEEecCCCC
Q 043707 331 AVNQESAVVYCGSSDGL 347 (347)
Q Consensus 331 ~~~p~~~~l~sgs~DG~ 347 (347)
...+--+.|++++.||.
T Consensus 247 ~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGG 263 (404)
T ss_pred hhhhhheeeeeccCCCe
Confidence 98888899999999983
No 261
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=5.2e-08 Score=80.34 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=94.7
Q ss_pred ecCCEEEEecCCCcEEEEeCCCcceee---ecCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEEecCCCCCceeeeec
Q 043707 131 ASGDLLYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIITGDSNKIFTGHQ-----DGKIRIWKVSRKNPSVHKRVG 202 (347)
Q Consensus 131 ~~~~~l~tg~~dg~I~vwd~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~-----Dg~I~vwd~~~~~~~~~~~~~ 202 (347)
.-++.++++..||.+.+.+..+.++.. ..-...--+.++...++.+.++.. -+..+.|+++..+......
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-- 176 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-- 176 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc--
Confidence 346789999999999999866532211 111111122233334444444331 1234455554332111000
Q ss_pred ccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCE-EEEEEecCCCcE
Q 043707 203 SLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAI 280 (347)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~-~~~~~~~h~~~v 280 (347)
...+.|.+++-+|. .+++++|+.||.+.+||.+... +...+++|+.++
T Consensus 177 ------------------------------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 177 ------------------------------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred ------------------------------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 13345899999995 6678888999999999999874 445568999999
Q ss_pred EEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707 281 NSVVAGFDS--LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 281 ~~i~~~~~~--~l~s~~~dg~I~vwd~~ 306 (347)
+.+-|+|.. .|+++++||.+..||..
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCC
Confidence 999999975 89999999999999987
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=4.2e-06 Score=72.52 Aligned_cols=188 Identities=10% Similarity=0.168 Sum_probs=126.0
Q ss_pred EEeecCCEEEEec-CCCcEEEEeCCC-----cceeeecCCCC----------eeEEEEeCCCCEEEEEeC-CCcEEEEec
Q 043707 128 SLAASGDLLYTGS-DSKNIRVWKNLK-----EFSGFKSNSGL----------VKAIIITGDSNKIFTGHQ-DGKIRIWKV 190 (347)
Q Consensus 128 ~l~~~~~~l~tg~-~dg~I~vwd~~~-----~~~~~~~h~~~----------V~~l~~sp~~~~l~s~~~-Dg~I~vwd~ 190 (347)
+++.+|++|+++. ..|.|.++-+.. .......|.+. +....+.|++++|+++.. -.+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 5556687777774 457889986432 12223345444 889999999999988863 237999999
Q ss_pred CCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC-E
Q 043707 191 SRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDC-K 268 (347)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~-~ 268 (347)
..+.......... .-...-+.|.|+|++++.+...+ +++|.+|..... .
T Consensus 175 ~dg~L~~~~~~~v-----------------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 175 DDGKLTPADPAEV-----------------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred ccCcccccccccc-----------------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 9776433322111 13445678999999999888776 899999998763 2
Q ss_pred EEEEEec---------CCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC
Q 043707 269 CLESINA---------HDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA 337 (347)
Q Consensus 269 ~~~~~~~---------h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 337 (347)
.+..++. .......|..++|| +|+++. ....|.+|.+...+. ..........+.....+..|++.++
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCC
Confidence 2333322 13456788899999 555543 355888888864432 2333344444555678999999999
Q ss_pred EEEEecCCC
Q 043707 338 VVYCGSSDG 346 (347)
Q Consensus 338 ~l~sgs~DG 346 (347)
+|+++..|+
T Consensus 304 ~Liaa~q~s 312 (346)
T COG2706 304 FLIAANQKS 312 (346)
T ss_pred EEEEEccCC
Confidence 999998875
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.77 E-value=7.5e-08 Score=81.94 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=103.6
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC
Q 043707 166 AIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA 245 (347)
Q Consensus 166 ~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 245 (347)
-.+|+|+|+++++++.- .+.|-|..+-+...... --+.|.-+.|..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------------------------------cldki~yieW~a 58 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------------------------------CLDKIVYIEWKA 58 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------HHHHhhheeeec
Confidence 35799999999999866 67777776654221111 124566788888
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707 246 EQGLLYSG-SWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK 322 (347)
Q Consensus 246 ~~~~l~s~-s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 322 (347)
|.-+++.+ ..|+.|.+|++.+.+-...+.....++..+.|+||| +|.+..-|-+|.||.+.+... ..+.-
T Consensus 59 ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-------~~~~~ 131 (447)
T KOG4497|consen 59 DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-------YLLPH 131 (447)
T ss_pred cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-------EEecc
Confidence 87665554 568899999999998888888888899999999998 777888899999999975432 11222
Q ss_pred cCCcEEEEEEccCCCEEEEecC
Q 043707 323 QENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
....+..++|+|+|++.+.++.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred cccCceeEEECCCCceeeeeec
Confidence 2446789999999999887654
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=3e-08 Score=84.79 Aligned_cols=165 Identities=17% Similarity=0.280 Sum_probs=110.6
Q ss_pred eccccEEEEeec--CCEEEEecCCCcEEEEeCCCc---ce--eeecC-----CCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707 121 RKEGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE---FS--GFKSN-----SGLVKAIIITG-DSNKIFTGHQDGKIRI 187 (347)
Q Consensus 121 ~h~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~---~~--~~~~h-----~~~V~~l~~sp-~~~~l~s~~~Dg~I~v 187 (347)
+|+-+|.+++.+ ...++++. |-.|.+|++... +. .++.+ +..|++..|+| ..+.|+-.+..|+||+
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 588899999975 44666654 778999985422 11 12222 35688999999 4567888888999999
Q ss_pred EecCCCCCce-eeeecc---cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 043707 188 WKVSRKNPSV-HKRVGS---LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263 (347)
Q Consensus 188 wd~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwd 263 (347)
-|++...... +..... .|....+ ..+--..|..+.|+.+|+++++-+. -++++||
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsf--------------------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSF--------------------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhh--------------------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 9999654211 111111 1111110 0012345888999999999998653 6899999
Q ss_pred C-CCCEEEEEEecCCC------------cE---EEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707 264 I-SDCKCLESINAHDD------------AI---NSVVAGFDS-LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 264 l-~~~~~~~~~~~h~~------------~v---~~i~~~~~~-~l~s~~~dg~I~vwd~~~ 307 (347)
+ ...+++.+++.|.. .| ..+.|+.++ .++||+..+.++++++..
T Consensus 300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 9 56788888877642 22 345676655 999999999999999653
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=87.99 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=85.9
Q ss_pred ccEEEEeec--CCEEEEecCCCcEEEEeCCCc-----------------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCc
Q 043707 124 GHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE-----------------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGK 184 (347)
Q Consensus 124 ~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~-----------------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~ 184 (347)
....|+.|+ ..+++.|+.||.++|..+.+. -+++.+|.+.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 345688886 569999999999999963311 3457899999999999999999999999999
Q ss_pred EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 185 IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 185 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
|.||=+-.+.-...+... +...-|.+++|+.+|..+...-.||.|.|=.+
T Consensus 95 IiVWmlykgsW~EEMiNn------------------------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINN------------------------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEEEeeecccHHHHHhhC------------------------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 999988766422211111 24566889999999998888888888776665
Q ss_pred C
Q 043707 265 S 265 (347)
Q Consensus 265 ~ 265 (347)
+
T Consensus 145 d 145 (1189)
T KOG2041|consen 145 D 145 (1189)
T ss_pred c
Confidence 4
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3.1e-08 Score=58.79 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=34.2
Q ss_pred cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 153 EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 153 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
.+..+.+|.+.|.+|+|+|++++|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4677899999999999999999999999999999997
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=6.5e-08 Score=84.30 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=80.1
Q ss_pred cCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCC
Q 043707 140 SDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPK 218 (347)
Q Consensus 140 ~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
++...+.+|... ......-+|-..+++++|+||++.|+++..|.+|||-.......+....
T Consensus 129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------------------ 190 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------------------ 190 (390)
T ss_pred CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------------------
Confidence 334445555443 4455677899999999999999999999999999998776543222222
Q ss_pred eEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 219 NYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 219 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
.+|..-|..+++-++ ..|++++.|+++++||+++++++.++.
T Consensus 191 -------------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 -------------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -------------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 259999999998865 558999999999999999999887664
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=4.6e-08 Score=88.56 Aligned_cols=165 Identities=14% Similarity=0.251 Sum_probs=118.9
Q ss_pred eeEeeeeccccEEEEee--cCCEEEEecCCCcEEEEeCC---------CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC
Q 043707 115 LIGSIVRKEGHIYSLAA--SGDLLYTGSDSKNIRVWKNL---------KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG 183 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~--~~~~l~tg~~dg~I~vwd~~---------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg 183 (347)
.+..+.+|+..|.++.. +.+-+++++.|++|++|.+. .+..+++.|+.+|.++-|-.+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 35667789998888774 56689999999999999743 2345678899999999999987777766 88
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE-eCCCcEEEE
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG-SWDKTLKVW 262 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~vw 262 (347)
-|.+||---++......... . .+..+.|.|+. +-+..++..| +...+++++
T Consensus 805 giHlWDPFigr~Laq~~dap--k-------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAP--K-------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLF 856 (1034)
T ss_pred cceeecccccchhHhhhcCc--c-------------------------cCCCceeEecc-cCcchheeeeccchhhheee
Confidence 99999976554432221110 0 01223344443 2244455554 678999999
Q ss_pred eCCCCEEEEEEe-----cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 263 RISDCKCLESIN-----AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 263 dl~~~~~~~~~~-----~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
|.+..+-...++ +....+.+++..+.| .++++-..|.|.+.|.+++.
T Consensus 857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 999887665554 334568899998887 89999999999999998765
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.71 E-value=2.6e-06 Score=85.96 Aligned_cols=217 Identities=13% Similarity=0.061 Sum_probs=132.5
Q ss_pred cccEEEEee--cCCEEEEecCCCcEEEE----eCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707 123 EGHIYSLAA--SGDLLYTGSDSKNIRVW----KNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 123 ~~~V~~l~~--~~~~l~tg~~dg~I~vw----d~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
.+.|.++.+ +...++.+..+|.|.+. +.... ....-.-...|.+++|+||+..|+....+++|.+-.- +-.+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence 356777775 45678888888999998 54433 3333345678999999999999999999999887642 2222
Q ss_pred ceeeeeccc-ccccceEEeccCCC-eEEEEeecce---------------eeeeecCCCeeEEEEcCCCCEEEEEeC---
Q 043707 196 SVHKRVGSL-PTFKDYVKSSVNPK-NYVEVRRNRN---------------VLKIRHYDAVSCLSLNAEQGLLYSGSW--- 255 (347)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~---------------~~~~~h~~~V~~l~~~~~~~~l~s~s~--- 255 (347)
.....+... ......+..++..+ +.+.-..++. .... +.+.-..|+|-.||.++++.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 222222211 11223333333322 1111111110 0111 4456678999999999999875
Q ss_pred C---CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeC---CCcEEEEEcccCCccceeeehhhhhccCCcEE
Q 043707 256 D---KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSA---DGTVKVWRRELQGKGTKHFLAQVLLKQENAIT 328 (347)
Q Consensus 256 d---g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~---dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~ 328 (347)
+ +.|+||+- +|....+-..-.+--.+++|.|.| +||+.-. ...|.+|..+.... ....+. +......|.
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~-~~~~~~~v~ 308 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLR-FDPEEEKVI 308 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecC-CCCCCceee
Confidence 2 57999994 576555554444445678999999 5555443 35677776652221 111111 123466899
Q ss_pred EEEEccCCCEEEEecCC
Q 043707 329 ALAVNQESAVVYCGSSD 345 (347)
Q Consensus 329 ~l~~~p~~~~l~sgs~D 345 (347)
.|+|++++..||.--.|
T Consensus 309 ~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLED 325 (928)
T ss_pred EEEECCCCCEEEEEecC
Confidence 99999999999986654
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.70 E-value=3.5e-05 Score=68.94 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=125.3
Q ss_pred ceeEeeeeccccEEEEeecCCEEEEecC----------CCcEEEEeCCCc--ceeeec-------CCCCeeEEEEeCCCC
Q 043707 114 GLIGSIVRKEGHIYSLAASGDLLYTGSD----------SKNIRVWKNLKE--FSGFKS-------NSGLVKAIIITGDSN 174 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~~~~l~tg~~----------dg~I~vwd~~~~--~~~~~~-------h~~~V~~l~~sp~~~ 174 (347)
+.+.++..-..+-..++++++.|+.+.. +..|.+||.... ...+.. .......++++|+|+
T Consensus 38 ~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 38 RVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK 117 (352)
T ss_pred EEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC
Confidence 3455555433322238888887776654 789999996543 323321 122344789999999
Q ss_pred EEEEEe-C-CCcEEEEecCCCCCceeeeecccccccceEEe--------ccCCCeEE-EEeecceee----eeecC--CC
Q 043707 175 KIFTGH-Q-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKS--------SVNPKNYV-EVRRNRNVL----KIRHY--DA 237 (347)
Q Consensus 175 ~l~s~~-~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~----~~~h~--~~ 237 (347)
+|+... . +..|-+.|+.+++......+ |.+...+.. +.+..... ......... .+-+. ..
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDV---PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEeC---CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 998776 3 68999999999987665554 333333322 23332222 111111100 01011 00
Q ss_pred e-eEEEEcC-CCCEEEEEeCCCcEEEEeCCC-----CEEEEEEec-------CCCcEEEEEeCCCC-EEEEEe-------
Q 043707 238 V-SCLSLNA-EQGLLYSGSWDKTLKVWRISD-----CKCLESINA-------HDDAINSVVAGFDS-LVFTGS------- 295 (347)
Q Consensus 238 V-~~l~~~~-~~~~l~s~s~dg~i~vwdl~~-----~~~~~~~~~-------h~~~v~~i~~~~~~-~l~s~~------- 295 (347)
+ ..-.|.+ ++.+++.... |+|.+.|+.. .+.+..+.. ..+.+.-+++++++ .++...
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 0 0003344 7888888776 9999999643 233333321 22334458999987 444421
Q ss_pred ---CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCC-EEEEec
Q 043707 296 ---ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESA-VVYCGS 343 (347)
Q Consensus 296 ---~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~l~sgs 343 (347)
..+.|.++|..+.+. +..+.. ...+..|+++||++ +|++..
T Consensus 274 hk~~~~~V~ViD~~t~kv------i~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKR------LRKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred ccCCCCEEEEEECCCCeE------EEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 225899999875543 222221 34889999999999 887665
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=7.2e-08 Score=57.19 Aligned_cols=38 Identities=37% Similarity=0.767 Sum_probs=35.7
Q ss_pred CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (347)
Q Consensus 267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd 304 (347)
++++.++++|.+.|++|+|+|++ +|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999996 999999999999997
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.69 E-value=3.1e-06 Score=75.69 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCC-cEEEEecCCCCCceeeeecccccccce
Q 043707 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG-KIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
+|++++..+. |...|.+........-+|.+.|.-..+..+++-++.|..|| .+-|+|.++++.....
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e----------- 398 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE----------- 398 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------
Confidence 4778877775 67788776666555667888899888888888999999999 8999999987532211
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~- 289 (347)
+.-+.|..+..+++|+.++.+.....|.+.|+.+++....-+...+-|+.+.|+|++
T Consensus 399 ----------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 399 ----------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred ----------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 255778999999999999999988999999999998776666677889999999998
Q ss_pred EEEEEeCCC----cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 290 LVFTGSADG----TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 290 ~l~s~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
++|-+--+| .|+++|+...+ ..-+.+-.+|. .+-+|.|++++|+--+
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta~D---fsPaFD~d~ryLYfLs 507 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTAYD---FSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCe----EEEecCCcccc---cCcccCCCCcEEEEEe
Confidence 666555454 78999997432 22222222332 3557888888876544
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=95.82 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=122.9
Q ss_pred eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236 (347)
Q Consensus 157 ~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 236 (347)
.+.+-..|.++.=+|...+.+||+.||.|++|....++.....+.. ...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s 2252 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNS 2252 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccc
Confidence 3444566778888888889999999999999999887765544433 337
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEe---CCCcEEEEEcccCCccce
Q 043707 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS---ADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~---~dg~I~vwd~~~~~~~~~ 313 (347)
.|+.+.|+.+|+.+..+..||.+-+|... .++....+.|........|-. ..+++++ .++.+.+||......
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~--- 2327 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPM--- 2327 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcc---
Confidence 78899999999999999999999999986 678888889998888888865 5566554 578999999875443
Q ss_pred eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
..++. ..|.+.++++++.|..+.|++||.+|
T Consensus 2328 ~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2328 NSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence 22333 78999999999999999999999998
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=3e-06 Score=70.50 Aligned_cols=169 Identities=11% Similarity=-0.002 Sum_probs=111.3
Q ss_pred CCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEE-eCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIII-TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK 208 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~-sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 208 (347)
-.+||.|+..|...+|..... ......|...|+-+.= .-..-.+..++.|.++++.+++.+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence 348999999999999985422 2222233332222111 112235778889999999988766432211
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCC--eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEE--EecCCCcEEEE
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDA--VSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLES--INAHDDAINSV 283 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~--~~~h~~~v~~i 283 (347)
|... +..++++++++++++.+....|-.|.+... +-+.. .....+.-.+.
T Consensus 155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3333 778999999999999999999999998643 22222 22233344567
Q ss_pred EeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 284 VAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 284 ~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
.|+... .+|++..||++.|||++....... .....-..|.+.|..+.|++-|
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchh-hhcccCCCCCCceEEEEecCCC
Confidence 787655 899999999999999996553111 1122334589999999999865
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.5e-06 Score=82.24 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=116.7
Q ss_pred ccEEEEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecc
Q 043707 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGS 203 (347)
Q Consensus 124 ~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~ 203 (347)
..+.|...++++|+-|..+|.|++++..........|+.. .-+|.+++||+.||+|.|--+-+.+.....
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~---- 109 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY---- 109 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE----
Confidence 4567788889999999999999999966554555556544 558999999999999999888776543322
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCC---EEEEEEec
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-----QGLLYSGSWDKTLKVWRISDC---KCLESINA 275 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~dg~i~vwdl~~~---~~~~~~~~ 275 (347)
....++..++++|+ .+.+++|+.-| +.++.-+=. ..+ .+..
T Consensus 110 -----------------------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 110 -----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred -----------------------------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 24567899999997 56899999888 777764311 222 3555
Q ss_pred CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEE
Q 043707 276 HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 276 h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~ 340 (347)
-.++|.+|.|. ..++|=+. |--|+|||+.....-....+.......+.--..+.|.++.++++
T Consensus 159 ~eG~I~~i~W~-g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 159 GEGPIHSIKWR-GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred CccceEEEEec-CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 67899999995 23555554 55589999986543111111111111222344677776655443
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.4e-06 Score=75.04 Aligned_cols=126 Identities=13% Similarity=0.215 Sum_probs=92.5
Q ss_pred cEEEEeCCCcceeeec-CCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707 144 NIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY 220 (347)
Q Consensus 144 ~I~vwd~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
++++.++......+.. -.++|.++.|+|+++.|+.+. .--++.|+|++..- ....
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---v~df------------------- 309 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---VFDF------------------- 309 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---eEeC-------------------
Confidence 4566655533223332 368999999999998877654 45678899987541 1111
Q ss_pred EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-
Q 043707 221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS- 295 (347)
Q Consensus 221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~- 295 (347)
-.++=+++-|+|.|++|+.++- -|.|-|||+.+.+++..+.+-.. +-+.|+||| +|+|+.
T Consensus 310 -------------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 310 -------------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATT 374 (566)
T ss_pred -------------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEec
Confidence 3456678999999999998876 57899999999999999987655 447899999 666554
Q ss_pred -----CCCcEEEEEcc
Q 043707 296 -----ADGTVKVWRRE 306 (347)
Q Consensus 296 -----~dg~I~vwd~~ 306 (347)
-|+.++||+..
T Consensus 375 aPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYT 390 (566)
T ss_pred cccEEecCCeEEEEec
Confidence 37899999986
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.3e-07 Score=85.62 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=112.6
Q ss_pred ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeee
Q 043707 154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIR 233 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (347)
+..+.+|+..|..++--.+.+-+++++.|++|++|.++...-..... ..+.....
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence 55688999999998877778899999999999999997643111100 01112235
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--cCCCcEEEEEeCCC---C-EEEEEeCCCcEEEEEccc
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--AHDDAINSVVAGFD---S-LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~h~~~v~~i~~~~~---~-~l~s~~~dg~I~vwd~~~ 307 (347)
|..+|..+.|-.+.++++++ ||.|.+||.--++++..+. ...+.+..+.+-+. . +++.++...+|+++|.+.
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99999999999887777654 7899999988787776442 12233334444333 2 444457899999999986
Q ss_pred CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+- .....+....+....+.+++..+.|+.++++=+.|
T Consensus 861 ce~-~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 861 CEW-TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred ccc-eeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence 542 11111222234566789999999999998876665
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=9.9e-06 Score=77.42 Aligned_cols=195 Identities=13% Similarity=0.220 Sum_probs=129.5
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCCCc-ceeeecCCCC-eeEEEEeCCCCEEEEEeCCCc-----EEEEecCCCCCce
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGL-VKAIIITGDSNKIFTGHQDGK-----IRIWKVSRKNPSV 197 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~-V~~l~~sp~~~~l~s~~~Dg~-----I~vwd~~~~~~~~ 197 (347)
.|.|+..++..++.|+.+|.|.+.+..-. ...|+.+... |.-+....+...|++-+.|+. |+||+++..+...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 78899999999999999999999986544 4888888777 555544445568888887765 8999998653211
Q ss_pred -eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---C-CEEEEE
Q 043707 198 -HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS---D-CKCLES 272 (347)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~---~-~~~~~~ 272 (347)
...+... .+.. ........++.+++.+.+-..++.|-.+|.|..+.-. + +....-
T Consensus 107 sP~c~~~~-----------------ri~~---~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 107 SPQCLYEH-----------------RIFT---IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred Ccceeeee-----------------eeec---cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 0000000 0000 0000145678999999999999999999999988532 1 111111
Q ss_pred EecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 273 INAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 273 ~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
...-..+|+.+++..++ .++++ .-..|.+|.+. ++ . .....+..|...+.|..+++....+++|+..
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~--gr--~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLS--GR--T-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEE-ecceeEEEEec--CC--C-cceeeeccCCccceeeecCCCCccEEEecCc
Confidence 12236789999998877 33333 34578999987 32 1 2345577888899999999876645555543
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=0.0001 Score=64.12 Aligned_cols=202 Identities=11% Similarity=0.137 Sum_probs=119.8
Q ss_pred CCcEEEEeCCCc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCC--CCCceeeeecccccccceE
Q 043707 142 SKNIRVWKNLKE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSR--KNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 142 dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~--~~~~~~~~~~~~~~~~~~~ 211 (347)
+.-|++|++.+. ....-.+.+.++-|+|+|+++.|+++..+ |.|..|.++. ++.....+.........++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999986522 12233456778899999999999988755 6788887775 3322211111111111222
Q ss_pred Ee----------ccCCCeEE--EEeecc----eeeeeecCCC----------eeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 043707 212 KS----------SVNPKNYV--EVRRNR----NVLKIRHYDA----------VSCLSLNAEQGLLYSGSW-DKTLKVWRI 264 (347)
Q Consensus 212 ~~----------~~~~~~~~--~~~~~~----~~~~~~h~~~----------V~~l~~~~~~~~l~s~s~-dg~i~vwdl 264 (347)
.. ......+. .+.... ......|.+. +....+.|++++|++.+. --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 22 22222211 111111 1123345555 888999999999998864 235999999
Q ss_pred CCCEEEEEEe---cCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCc-cceeeehhhhhc---cCCcEEEEEEccC
Q 043707 265 SDCKCLESIN---AHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGK-GTKHFLAQVLLK---QENAITALAVNQE 335 (347)
Q Consensus 265 ~~~~~~~~~~---~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~---h~~~V~~l~~~p~ 335 (347)
.+++....-. .....-..|+|+|++ +. ++.--+++|.+|....... -...+.+..+.. ...+..+|..++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9876432211 234557899999998 33 2455699999999985421 111111122221 2446789999999
Q ss_pred CCEEEEec
Q 043707 336 SAVVYCGS 343 (347)
Q Consensus 336 ~~~l~sgs 343 (347)
|++|+++-
T Consensus 255 GrFLYasN 262 (346)
T COG2706 255 GRFLYASN 262 (346)
T ss_pred CCEEEEec
Confidence 99999864
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=6.8e-05 Score=71.14 Aligned_cols=209 Identities=11% Similarity=0.106 Sum_probs=132.8
Q ss_pred CCCCCCCCccccccc-----------ceeEeeeeccccEEEEeecC--------------CEEEEecCCCcEEEEeCCC-
Q 043707 99 MPPYSPNENLLSSCN-----------GLIGSIVRKEGHIYSLAASG--------------DLLYTGSDSKNIRVWKNLK- 152 (347)
Q Consensus 99 ~~~~~p~~~~~~~~~-----------~~i~~l~~h~~~V~~l~~~~--------------~~l~tg~~dg~I~vwd~~~- 152 (347)
...|+|.|-+..++. +++.++..|+..|+.+.|.. -+||+++..|.|.+||...
T Consensus 20 A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred ccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 345667766544433 46788889999999998741 1788899999999999553
Q ss_pred -cceeeecCCCCeeEEEEeCC---C-CEEEEEeCCCcEEEEecCCCCCceeeeec--------ccccc-cceEEeccCC-
Q 043707 153 -EFSGFKSNSGLVKAIIITGD---S-NKIFTGHQDGKIRIWKVSRKNPSVHKRVG--------SLPTF-KDYVKSSVNP- 217 (347)
Q Consensus 153 -~~~~~~~h~~~V~~l~~sp~---~-~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~- 217 (347)
...-+..|..+|.+++|-+. . ..|+.-+...+|.+|+..+++........ ..|.. ..+......+
T Consensus 100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce
Confidence 34456778889999999772 2 36777777889999999988753222111 11111 1111111111
Q ss_pred ---------------CeEEEEeeccee-------ee--eecCC---------CeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 043707 218 ---------------KNYVEVRRNRNV-------LK--IRHYD---------AVSCLSLNAEQGLLYSGSWDKTLKVWRI 264 (347)
Q Consensus 218 ---------------~~~~~~~~~~~~-------~~--~~h~~---------~V~~l~~~~~~~~l~s~s~dg~i~vwdl 264 (347)
...+++...... .. ..+.. ....++|+|.-+.++-...-..+.|+|+
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl 259 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL 259 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc
Confidence 111122111000 00 00000 0123567886444444445678999999
Q ss_pred CCCEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEccc
Q 043707 265 SDCKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 265 ~~~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~~ 307 (347)
+-..++....-..+.+.-+.+-|++ .|++.-.||.+.+|-.+.
T Consensus 260 e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 260 EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9999998888777777778888875 899999999999998764
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=8e-07 Score=83.27 Aligned_cols=143 Identities=18% Similarity=0.248 Sum_probs=105.2
Q ss_pred EEEEecCCCcEEEEeCCCc-----ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707 135 LLYTGSDSKNIRVWKNLKE-----FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK 208 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 208 (347)
+-++......-.+|++... -..+.+|..+|+++-|.| ....+++++.|-.+..||+++.........
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~------- 155 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS------- 155 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-------
Confidence 3334444455678874322 234568999999999998 445899999999999999987653221110
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEecCCCcEEEEEeCC
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC-KCLESINAHDDAINSVVAGF 287 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~ 287 (347)
.-......+.|+-....+++.+..+.|.|||++.+ .++..+++|...|+.+.|..
T Consensus 156 ------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 156 ------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred ------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 12334567889886555556666788999999876 57889999999999998865
Q ss_pred C--CEEEEEeCCCcEEEEEcccC
Q 043707 288 D--SLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 288 ~--~~l~s~~~dg~I~vwd~~~~ 308 (347)
- +.+.+++.|++|++||....
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhhhcccCCCCceeeeccccc
Confidence 3 48999999999999998744
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=6.8e-07 Score=83.71 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=107.1
Q ss_pred eeEeeeeccccEEEEeec---CCEEEEecCCCcEEEEeCCCcce---eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 115 LIGSIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNLKEFS---GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 115 ~i~~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~~~~~---~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.-..+.+|...|+.+.++ .+.|++++.|..+..||+..... .+..-...-..++|+--...++..+....|++|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 455677899999999986 45999999999999999765433 333344566788998743344555556789999
Q ss_pred ecCCCCCceeeeecccc--------cccceEEeccCCCeEEEEeeccee-----eeeecCCCeeEEEEcCCCC--EEEEE
Q 043707 189 KVSRKNPSVHKRVGSLP--------TFKDYVKSSVNPKNYVEVRRNRNV-----LKIRHYDAVSCLSLNAEQG--LLYSG 253 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~l~~~~~~~--~l~s~ 253 (347)
|++.+............ ....-..........+..+..... ..+....+|..-.+-|-|. ++.-.
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~ 265 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM 265 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence 99988643322211000 000000111111222222221111 1111223343333333221 11111
Q ss_pred eCCCcEEEEeCC---------C-CEEEEEEecCCCcEEEEEeCC--------CC---EEEEEeCCCcEEEEEccc
Q 043707 254 SWDKTLKVWRIS---------D-CKCLESINAHDDAINSVVAGF--------DS---LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 254 s~dg~i~vwdl~---------~-~~~~~~~~~h~~~v~~i~~~~--------~~---~l~s~~~dg~I~vwd~~~ 307 (347)
-.+..+.+++.+ + .++++.|.+|++.|....|-. |. .|+|=+.|..+++|-+..
T Consensus 266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 111122222221 1 257888999998886665532 11 799999999999998863
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=4.8e-05 Score=70.26 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=75.3
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCc
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~ 310 (347)
+.....|.|++++|+...|+.|+.||.|.+||...+... +....-..+.++|+|+| +|++|+..|.|.+||+....-
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 457889999999999999999999999999998765333 22344567889999998 888999999999999975432
Q ss_pred c----------ceeeehhhhhccCCcEEEEEEccC
Q 043707 311 G----------TKHFLAQVLLKQENAITALAVNQE 335 (347)
Q Consensus 311 ~----------~~~~~~~~~~~h~~~V~~l~~~p~ 335 (347)
. ...........+...+..+.|.+.
T Consensus 334 ~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 334 KMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred ceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 1 011112233345667778888743
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=7.7e-05 Score=69.19 Aligned_cols=174 Identities=7% Similarity=-0.005 Sum_probs=97.2
Q ss_pred EeecCCE-EEEecC---CCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEE-EeCC--CcEEEEecCCCCCceeee
Q 043707 129 LAASGDL-LYTGSD---SKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFT-GHQD--GKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 129 l~~~~~~-l~tg~~---dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s-~~~D--g~I~vwd~~~~~~~~~~~ 200 (347)
++++|+. ++..+. +..|+++|.... .+.+....+.+....|+|||+.|+. .+.+ ..|.++|+.+++.....
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT- 273 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT- 273 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc-
Confidence 3345663 443322 346777786433 3333345566677889999987654 4334 45667777665421111
Q ss_pred ecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCEEEEEEecCC
Q 043707 201 VGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DK--TLKVWRISDCKCLESINAHD 277 (347)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg--~i~vwdl~~~~~~~~~~~h~ 277 (347)
.+........|+|||+.|+-.+. .+ .|.++|+.+++...... ..
T Consensus 274 --------------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g 320 (419)
T PRK04043 274 --------------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HG 320 (419)
T ss_pred --------------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CC
Confidence 12222234579999987666553 33 58888888776533222 11
Q ss_pred CcEEEEEeCCCC-EEE-EEeCC--------CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 278 DAINSVVAGFDS-LVF-TGSAD--------GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 278 ~~v~~i~~~~~~-~l~-s~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.. ...|+||| .|+ +...+ ..|.+.|+..+.. +.+... .......|+|||+.|+..+.+|
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~~LT~~-~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------RRLTAN-GVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------EECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence 11 24899998 444 33332 3677777754321 112221 1223588999999887766543
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=8.5e-07 Score=76.14 Aligned_cols=126 Identities=16% Similarity=0.252 Sum_probs=91.7
Q ss_pred cccEEEEeec--CCEEEEecCCCcEEEEeCCCc------ceeeecCCCCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCC
Q 043707 123 EGHIYSLAAS--GDLLYTGSDSKNIRVWKNLKE------FSGFKSNSGLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 123 ~~~V~~l~~~--~~~l~tg~~dg~I~vwd~~~~------~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
++.|+++.+. +.++..|+.+|.|.+.|+... ....--|...|++++.-. ++++|++.+.+|+|++||++.-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 3457777664 679999999999999996533 223345889999998877 7889999999999999999866
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE--EEcCCCCEEEEEeCCCcEEEEeCCCCEEEE
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~ 271 (347)
+..... ....+|...-.-+ -.++....++++++|...+||.++.+..+.
T Consensus 332 K~~~~V-----------------------------~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 332 KCKKSV-----------------------------MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hcccce-----------------------------eeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 532111 1112343332222 235567788899999999999999999998
Q ss_pred EEecCC
Q 043707 272 SINAHD 277 (347)
Q Consensus 272 ~~~~h~ 277 (347)
+++...
T Consensus 383 tipf~~ 388 (425)
T KOG2695|consen 383 TIPFPY 388 (425)
T ss_pred ccCCCC
Confidence 887543
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.5e-05 Score=72.58 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=97.6
Q ss_pred cCCEEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCC-----CCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707 132 SGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGD-----SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~-----~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
.|+++++|+.||+|.|-.+.. ....+ ....++.+|+++|+ .+++++|+..| +.++.-+--...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------- 151 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------- 151 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--------
Confidence 378999999999999987443 33333 34578999999998 46799999998 766643211000
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc-----
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA----- 279 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~----- 279 (347)
.........++|.++.|. |++++=++.+| |+|||+.+.+.+..++.....
T Consensus 152 ----------------------~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~ 206 (846)
T KOG2066|consen 152 ----------------------DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL 206 (846)
T ss_pred ----------------------cceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc
Confidence 000112367889999997 57788777666 899999998888777644333
Q ss_pred -EEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 043707 280 -INSVVAGFDSLVFTGSADGTVKVWRRE 306 (347)
Q Consensus 280 -v~~i~~~~~~~l~s~~~dg~I~vwd~~ 306 (347)
-..+.|.++..|+.|-.| +|+|..++
T Consensus 207 fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 207 FPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 345678777777777554 78888887
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.36 E-value=4.1e-05 Score=78.81 Aligned_cols=170 Identities=10% Similarity=0.114 Sum_probs=101.5
Q ss_pred EEee-cCCEEEEecCCCcEEEEeCCCc-ceeeec---------C------CCCeeEEEEeCCCCEE-EEEeCCCcEEEEe
Q 043707 128 SLAA-SGDLLYTGSDSKNIRVWKNLKE-FSGFKS---------N------SGLVKAIIITGDSNKI-FTGHQDGKIRIWK 189 (347)
Q Consensus 128 ~l~~-~~~~l~tg~~dg~I~vwd~~~~-~~~~~~---------h------~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd 189 (347)
++++ ++.++++...++.|++||.... ...+.+ + -.....|+++|+++.| ++-..++.|++||
T Consensus 689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768 (1057)
T ss_pred EEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 4444 3557777788899999985432 212211 1 1235679999998854 4556678999999
Q ss_pred cCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 190 VSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
+.++..... ....+..... .....................++++++|.++++-..+++|++||..++..
T Consensus 769 ~~tg~~~~~--~gg~~~~~~~---------l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 769 LKTGGSRLL--AGGDPTFSDN---------LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred CCCCcEEEE--EecccccCcc---------cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 987642111 1000000000 00000000000000112345789999999888888899999999987765
Q ss_pred EEEEe-------------cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 270 LESIN-------------AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 270 ~~~~~-------------~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
..... +.-.....|+++++| ++++-+.++.|++||+++.
T Consensus 838 ~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 838 TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 43321 111246788999888 6667778999999999754
No 288
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.35 E-value=0.00027 Score=64.08 Aligned_cols=158 Identities=10% Similarity=0.229 Sum_probs=98.8
Q ss_pred cEEEEe--ecCCEEEEe-cCCCcEEEEeCCCc---c---eeee-cCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCC-
Q 043707 125 HIYSLA--ASGDLLYTG-SDSKNIRVWKNLKE---F---SGFK-SNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSR- 192 (347)
Q Consensus 125 ~V~~l~--~~~~~l~tg-~~dg~I~vwd~~~~---~---~~~~-~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~- 192 (347)
+..++. ++++++++. -....|++|+.... + ..+. .....-..++|+|++++++... .+++|.++++..
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 455554 567766665 33347888885432 2 1222 2334678999999998876554 678899999983
Q ss_pred -CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--CC-
Q 043707 193 -KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRIS--DC- 267 (347)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~--~~- 267 (347)
+.......+...+.. .........|.++|++++|+++.. +..|.+|++. ++
T Consensus 225 ~g~~~~~~~~~~~~~~------------------------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEG------------------------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTEEEEEEEEESCETT------------------------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCceeEEEEeeecccc------------------------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 322222222222110 012236788999999999888775 6789999993 23
Q ss_pred -EEEEEEecCCCcEEEEEeCCCC-EEEEE-eCCCcEEEEEcc
Q 043707 268 -KCLESINAHDDAINSVVAGFDS-LVFTG-SADGTVKVWRRE 306 (347)
Q Consensus 268 -~~~~~~~~h~~~v~~i~~~~~~-~l~s~-~~dg~I~vwd~~ 306 (347)
+.+..+.........++++|++ +|+++ -.++.|.+|++.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 4455555555568899999998 55554 478899999886
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.34 E-value=0.00015 Score=74.72 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=112.5
Q ss_pred EEeecCCEEEEe-cCCCcEEEEeCCCc-ceeeecC-----------------CCCeeEEEEeC-CCCEEEEEeCCCcEEE
Q 043707 128 SLAASGDLLYTG-SDSKNIRVWKNLKE-FSGFKSN-----------------SGLVKAIIITG-DSNKIFTGHQDGKIRI 187 (347)
Q Consensus 128 ~l~~~~~~l~tg-~~dg~I~vwd~~~~-~~~~~~h-----------------~~~V~~l~~sp-~~~~l~s~~~Dg~I~v 187 (347)
++..+++.|+.+ ..++.|+++|.... +..+.+- -..-.+++++| ++..+++...++.|++
T Consensus 630 avd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v 709 (1057)
T PLN02919 630 AYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE 709 (1057)
T ss_pred EEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence 344456655444 44567888885432 3222110 01246899999 5666777778899999
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISD 266 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwdl~~ 266 (347)
||..++........+... ..+ ..............|+++|++..|+ +-..++.|++||+.+
T Consensus 710 ~d~~~g~v~~~~G~G~~~--------~~~----------g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYER--------NLN----------GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred EECCCCeEEEEecCCccc--------cCC----------CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 998776421100000000 000 0000001223467799999988555 455578999999987
Q ss_pred CEEEEEE-------------ecC--------CCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeeh-------
Q 043707 267 CKCLESI-------------NAH--------DDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLA------- 317 (347)
Q Consensus 267 ~~~~~~~-------------~~h--------~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~------- 317 (347)
+...... -.+ -.....+++.++| ++++-..+++|++||....... ...-
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~ 849 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFK 849 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCC
Confidence 6532111 000 1123578888888 6667778999999998643210 0000
Q ss_pred --hhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 318 --QVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 318 --~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
....+.-.....|+++++|+++++-+.++
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 01122234678999999999777765543
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=3.1e-06 Score=71.85 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=96.2
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
.|.-.|.++.|..+.+.++++. |=.|-+|+++-....... ++++-.. ...-..-|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnI---------------------VDiKP~n---meeLteVI 224 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNI---------------------VDIKPHN---MEELTEVI 224 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEE---------------------EeccCcc---HHHHHHHH
Confidence 4566688889988877777664 678999998754322111 1111000 00122347
Q ss_pred eEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEE------EEE----------EecCCCcEEEEEeCCCCEEEEEeCCCcEE
Q 043707 239 SCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC------LES----------INAHDDAINSVVAGFDSLVFTGSADGTVK 301 (347)
Q Consensus 239 ~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~------~~~----------~~~h~~~v~~i~~~~~~~l~s~~~dg~I~ 301 (347)
++..|+|. ...+.-.+..|.|++-|+|+... +.. |..-...|..+.|++.|.++.+-.--+|+
T Consensus 225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvk 304 (460)
T COG5170 225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVK 304 (460)
T ss_pred hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence 77889985 34555566689999999985321 111 11123467888999999555555667999
Q ss_pred EEEcccCCccceeeehhh-----hhc--cCCcE---EEEEEccCCCEEEEecCC
Q 043707 302 VWRRELQGKGTKHFLAQV-----LLK--QENAI---TALAVNQESAVVYCGSSD 345 (347)
Q Consensus 302 vwd~~~~~~~~~~~~~~~-----~~~--h~~~V---~~l~~~p~~~~l~sgs~D 345 (347)
+||.+......+..+... +.. -...| ..+.|+-|.+.+.+|+..
T Consensus 305 iwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 999987665322221111 110 11233 357788888888888754
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=7.9e-06 Score=78.50 Aligned_cols=175 Identities=13% Similarity=0.139 Sum_probs=123.1
Q ss_pred CCEEEEecCCCcEEEEeCCCcceeeecCCC--CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSG--LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~--~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
+..++-|+-...+..+|..+....-..+-+ .|.-+ ..+++.+++|...|+|.+-|.++-+......
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD---------- 214 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeee----------
Confidence 556777777777777886654433333333 34444 4477899999999999999998876433322
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCEEEEEEecCCCcEE
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRISDCKCLESINAHDDAIN 281 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~vwdl~~~~~~~~~~~h~~~v~ 281 (347)
.|.+.|..+. -.|++|++++. |.-|+|||+|..+.+..+..+.++ .
T Consensus 215 ----------------------aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 215 ----------------------AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-Q 269 (1118)
T ss_pred ----------------------ccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-h
Confidence 4888887654 46889999875 555899999999988888777665 5
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 282 SVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 282 ~i~~~~~--~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
-+.|+|. ..+++++.-|+..+-|........ .-..........+.++++++++..|+.|-.+|
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCc--cceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 5678886 388899999999999954333210 01111222244599999999999999998877
No 292
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.4e-05 Score=76.97 Aligned_cols=147 Identities=13% Similarity=0.204 Sum_probs=110.9
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeC---------CCcEEEEecCCC
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQ---------DGKIRIWKVSRK 193 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---------Dg~I~vwd~~~~ 193 (347)
.|+-+..++++|.+|...|+|.+-|.. +....+..|++.|.++.. .|+.|++|+. |..|+|||++..
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence 477778889999999999999999954 668899999999988766 5669999985 567899999987
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEe---CCCC-E
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWR---ISDC-K 268 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwd---l~~~-~ 268 (347)
+......+...| .-+.|+|. ...+++++..|...+-| +.+. .
T Consensus 257 ral~PI~~~~~P---------------------------------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 257 RALSPIQFPYGP---------------------------------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred hccCCcccccCc---------------------------------hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 655444433222 23567775 45778888899999999 3332 1
Q ss_pred EEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 269 CLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
-+..+......+..+.+++.+ .++.|..+|.|.+|.-+
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 233344445668899999887 89999999999999743
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.30 E-value=0.00053 Score=58.05 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=109.2
Q ss_pred EEeecCCEEEEecCCCcEEEEeCCCcceee-------ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~-------~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
++..+|++||.-- |..|.|-......... +.....=.-++|+||+..||.+...|+|+++|+.....- ...
T Consensus 4 ~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~ 81 (282)
T PF15492_consen 4 ALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIP 81 (282)
T ss_pred eecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence 3445666665543 4566666433222211 111223457999999999999999999999999864321 111
Q ss_pred ecc-cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC------CCEEEEEeCCCcEEEEeCC-----CCE
Q 043707 201 VGS-LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE------QGLLYSGSWDKTLKVWRIS-----DCK 268 (347)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~s~dg~i~vwdl~-----~~~ 268 (347)
... .+. .-...|..|.|-+- ...|++-..+|.++=|-+. ..+
T Consensus 82 p~~~~~~--------------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~ 135 (282)
T PF15492_consen 82 PAMSFPG--------------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ 135 (282)
T ss_pred cccccCC--------------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce
Confidence 100 000 12344555555432 2346666677777766652 223
Q ss_pred EEEEEe--c-CCCcEEEEEeCCCC-EEEEE-eCCC----------cEEEEEcccCCc----------cc-----eeeehh
Q 043707 269 CLESIN--A-HDDAINSVVAGFDS-LVFTG-SADG----------TVKVWRRELQGK----------GT-----KHFLAQ 318 (347)
Q Consensus 269 ~~~~~~--~-h~~~v~~i~~~~~~-~l~s~-~~dg----------~I~vwd~~~~~~----------~~-----~~~~~~ 318 (347)
...+|. . +...|.++.++|.. +|+.| +... -+..|.+-.+.. .. ......
T Consensus 136 e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 136 ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 444443 2 46789999999986 44444 3332 366776643211 00 000111
Q ss_pred hh--------hccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 319 VL--------LKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 319 ~~--------~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+ ......|..|..+|||..||+...+|.
T Consensus 216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 11 112567999999999999999988873
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00027 Score=65.62 Aligned_cols=140 Identities=7% Similarity=-0.010 Sum_probs=83.2
Q ss_pred CCeeEEEEeCCCCE-EEEEeCC---CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707 162 GLVKAIIITGDSNK-IFTGHQD---GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237 (347)
Q Consensus 162 ~~V~~l~~sp~~~~-l~s~~~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 237 (347)
+.+..-.|+|+|+. ++..+.+ ..|.++|+.+++..... ...+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------------~~~g~ 234 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------------SSQGM 234 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------------cCCCc
Confidence 37788999999984 5544433 45888888776532211 13344
Q ss_pred eeEEEEcCCCCEEEE-EeCC--CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCC--cEEEEEcccCCc
Q 043707 238 VSCLSLNAEQGLLYS-GSWD--KTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADG--TVKVWRRELQGK 310 (347)
Q Consensus 238 V~~l~~~~~~~~l~s-~s~d--g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg--~I~vwd~~~~~~ 310 (347)
.....|+|||+.|+. .+.+ ..|.++|+..++. ..+..+........|+||| ++++....+ .|.+.|+..+..
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 556789999976654 4333 4588888877753 3444344333445799998 444444444 566666653321
Q ss_pred cceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
. .+. ..+. . ...|+|+|+.|+..+.
T Consensus 314 --~-rlt--~~g~--~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 314 --E-QVV--FHGK--N--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred --E-eCc--cCCC--c--CceECCCCCEEEEEEc
Confidence 1 111 1111 1 2489999998877654
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.22 E-value=0.0019 Score=58.33 Aligned_cols=170 Identities=13% Similarity=0.109 Sum_probs=111.3
Q ss_pred EeCCCCEEEEEeCCCcEEEEecCCCCCceeeee-c-----cccc--------------ccceEEeccCCCeEEEEeecce
Q 043707 169 ITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV-G-----SLPT--------------FKDYVKSSVNPKNYVEVRRNRN 228 (347)
Q Consensus 169 ~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~-~-----~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 228 (347)
.+.||+.|+-. ..|.|.++|-.+.+......- . ..+. ..+++.....++.++.-.....
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 34577665543 457899999887653221110 0 0000 0111222222223333333334
Q ss_pred eeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
.+.++|...|.-..+..+++-++.|..|| .+-|+|.++++. +.+...-+.|.++..+++| +++.+.....|.+.|+.
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 45667888899888988888999999999 899999987754 4455566789999999998 67788788888888998
Q ss_pred cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
++.. ...-....+-|+.++|+|++++||-+--+|
T Consensus 432 ngnv------~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 432 NGNV------RLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred CCCe------eEecccccceeEEEEEcCCceeEEEecCcc
Confidence 6532 111122356799999999999999775544
No 296
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.6e-05 Score=71.22 Aligned_cols=128 Identities=13% Similarity=0.207 Sum_probs=89.2
Q ss_pred cccEEEEeec--CC--EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCC---CcEEEEecCCCCC
Q 043707 123 EGHIYSLAAS--GD--LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD---GKIRIWKVSRKNP 195 (347)
Q Consensus 123 ~~~V~~l~~~--~~--~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D---g~I~vwd~~~~~~ 195 (347)
+|+|+++.|+ ++ -++-|-.=-++-|+|..... .+.--.++=.++-|+|.|++|+.++.+ |.|-|||+.+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 6789999986 43 34456667788999865332 223335677889999999999998865 7899999998654
Q ss_pred ceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCEE
Q 043707 196 SVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKC 269 (347)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~vwdl~~~~~ 269 (347)
+.... ...-+.+.|+|||.+++++.. |+.++||+. +|..
T Consensus 349 i~~~~----------------------------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~ 393 (566)
T KOG2315|consen 349 IAKFK----------------------------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL 393 (566)
T ss_pred ccccc----------------------------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence 33322 223456899999999999875 788999998 4665
Q ss_pred EEEEecCCCcEEEEEeCC
Q 043707 270 LESINAHDDAINSVVAGF 287 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~ 287 (347)
+....... ....+.|-|
T Consensus 394 l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 394 LHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred eehhhhhH-hHhheeeee
Confidence 54332221 355666654
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.19 E-value=0.0017 Score=55.75 Aligned_cols=179 Identities=11% Similarity=0.076 Sum_probs=106.2
Q ss_pred cCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEe-CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccce
Q 043707 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
.+.++++--..+.|+.|+............. ...+++. +++ .|+.+..++ +.++|..+++...........
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~----- 82 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG----- 82 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC-----
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC-----
Confidence 4557777777899999997655443322223 7788888 564 666666554 455588776432222210000
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCEEEEEEecCCCcEEE
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD--------KTLKVWRISDCKCLESINAHDDAINS 282 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------g~i~vwdl~~~~~~~~~~~h~~~v~~ 282 (347)
......+.+++.++|++.++.... |.|..++.. ++...... .-...+.
T Consensus 83 ----------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNG 138 (246)
T PF08450_consen 83 ----------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNG 138 (246)
T ss_dssp ----------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEE
T ss_pred ----------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccccccc
Confidence 023457789999999977776643 557777776 55433333 3456789
Q ss_pred EEeCCCC--EEEEEeCCCcEEEEEcccCCc-cceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 283 VVAGFDS--LVFTGSADGTVKVWRRELQGK-GTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 283 i~~~~~~--~l~s~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
|+|+|++ ++++-+..+.|..+++..... .........+.......-.+++..+|++.++.
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 9999998 445667888999999864332 11111122222222347788998888766653
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.18 E-value=0.00039 Score=58.80 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=96.2
Q ss_pred EEeecCCEEEEecCCCcEEEEeCC-Ccceeeec-------CCCCeeEEEEeCCC------CEEEEEeCCCcEEEEecCCC
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKS-------NSGLVKAIIITGDS------NKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~-~~~~~~~~-------h~~~V~~l~~sp~~------~~l~s~~~Dg~I~vwd~~~~ 193 (347)
++++++.+||.+...|+|+++|+. ..+..+.. -..+|-.+.|.+.. ..|+.-..+|.++-|-+..+
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g 129 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG 129 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc
Confidence 445667789999999999999954 22222221 23467777775521 24666667777777765432
Q ss_pred CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC----CC-------cEEEE
Q 043707 194 NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW----DK-------TLKVW 262 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----dg-------~i~vw 262 (347)
.......... -.....+...|.++.++|..++|++|+. |+ -+..|
T Consensus 130 t~q~y~e~hs------------------------fsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaW 185 (282)
T PF15492_consen 130 TNQGYQENHS------------------------FSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAW 185 (282)
T ss_pred cCCcceeeEE------------------------EEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEE
Confidence 1111110000 0001125678999999998888887764 11 25667
Q ss_pred eCCCCEE-----------------------EEEE------ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccC
Q 043707 263 RISDCKC-----------------------LESI------NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 263 dl~~~~~-----------------------~~~~------~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~ 308 (347)
.+-++.+ +..+ ...+..|..|..+||+ +||+...+|.|.+|++...
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 6532210 0011 1235678999999998 8999999999999999743
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=8.2e-06 Score=76.49 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=89.2
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC 240 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 240 (347)
.....|+.|+.+..+|++|+.||.++|..+.+........- +.... .-.-...+.+|...|..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~s---------------nLsmNQtLeGH~~sV~v 76 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAAS---------------NLSMNQTLEGHNASVMV 76 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--ccccc---------------ccchhhhhccCcceEEE
Confidence 45688999999888999999999999999887643221111 00000 00112234479999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE--ecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI--NAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~--~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~ 305 (347)
+.|+.+.+.|-+...+|.|.||-+-.+.-...+ ...++.|.++.|.-|| .+...-.||.|.|=.+
T Consensus 77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 999999999999999999999998776533322 2245667888888777 6666666666654444
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.6e-05 Score=71.18 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=94.9
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL 243 (347)
Q Consensus 164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 243 (347)
-+-+.|+|-|.||+|-+..| |.+|--.+-...... .|. .|.-+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---------------------------------~Hp-~Vq~idf 257 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF---------------------------------YHP-GVQFIDF 257 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc---------------------------------cCC-Cceeeec
Confidence 45689999999999999876 678965443221111 143 4788999
Q ss_pred cCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEecCCC--cEEE-EEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707 244 NAEQGLLYSGSW-----------DKTLKVWRISDCKCLESINAHDD--AINS-VVAGFDSLVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 244 ~~~~~~l~s~s~-----------dg~i~vwdl~~~~~~~~~~~h~~--~v~~-i~~~~~~~l~s~~~dg~I~vwd~~~~~ 309 (347)
+|..++|++-+. ...+.|||+++|...+.|....+ .+.- ..|+.|+..++.-....|.||+...-
T Consensus 258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf- 336 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF- 336 (698)
T ss_pred CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce-
Confidence 999999998653 25699999999999988876332 3333 47888885444445578999988632
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEE
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYC 341 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~s 341 (347)
.++..-.-.-..|....|+|.+.+||-
T Consensus 337 -----~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 337 -----MLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred -----eeecccccCCccccCcccCCCcceEEE
Confidence 222222223457889999999888874
No 301
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=3.3e-05 Score=72.47 Aligned_cols=116 Identities=14% Similarity=0.240 Sum_probs=88.1
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCCCc-cee--eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKE-FSG--FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV 201 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~-~~~--~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~ 201 (347)
..+|++..+++++.|+.-|.+++|+.... ... ..+-.+.+..+.++++..++|.|+..|.|.|+.+....+.....+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 45789999999999999999999984422 222 222445667777888888899999999999998887543322222
Q ss_pred cccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 202 GSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
.... ..|...|+|++|++++..+++|...|+|..-.+..
T Consensus 117 t~~d--------------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCD--------------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccc--------------------------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1110 02788999999999999999999999999988876
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00036 Score=63.99 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=69.4
Q ss_pred cCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCC----CEEEEEEecCCCcEEEEEeCCCC-EEEE---EeCCCcEEE
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSW---DKTLKVWRISD----CKCLESINAHDDAINSVVAGFDS-LVFT---GSADGTVKV 302 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~---dg~i~vwdl~~----~~~~~~~~~h~~~v~~i~~~~~~-~l~s---~~~dg~I~v 302 (347)
-.+.|...+|-|.|+.+++-+. ..++.+|-+++ .+.+..+.. ...+.+.|+|.| +++. ++..|.+.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEE
Confidence 3456778899999887766543 46688888763 233444442 456889999998 3332 356899999
Q ss_pred EEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 303 WRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 303 wd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
+|..... +..+-..-....+.+.|.|.|++++++++-
T Consensus 522 ~D~~~a~------~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 522 YDTDYAD------LKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred Eecchhh------hhhccCccccccccceECCCCCEEEEeeeh
Confidence 9997421 111111112356899999999999999863
No 303
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=1.4e-06 Score=80.62 Aligned_cols=177 Identities=15% Similarity=0.257 Sum_probs=114.2
Q ss_pred CEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeC-CCCEEEEEe----CCCcEEEEecCCCCCceeeeeccc
Q 043707 134 DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITG-DSNKIFTGH----QDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp-~~~~l~s~~----~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
-+++.|..+|.|-+-..... .....+|....++++|++ |.+.||.|- .|-.+.|||+.++-..+.......
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 47899999999999875433 334556778899999999 666777774 345699999988732111111100
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEecCCCcEEEE
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-CLESINAHDDAINSV 283 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-~~~~~~~h~~~v~~i 283 (347)
. +......+++|..+.+++++|...+.++++|+|... ....+ ....+..+
T Consensus 151 ~---------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~ 201 (783)
T KOG1008|consen 151 S---------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGI 201 (783)
T ss_pred c---------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccc
Confidence 0 123344578888889999999999999999998432 12222 23345556
Q ss_pred EeCC-CC-EEEEEeCCCcEEEEEc-ccCCccceeeehhhhhccCC----cEEEEEEccCC-CEEEEecCC
Q 043707 284 VAGF-DS-LVFTGSADGTVKVWRR-ELQGKGTKHFLAQVLLKQEN----AITALAVNQES-AVVYCGSSD 345 (347)
Q Consensus 284 ~~~~-~~-~l~s~~~dg~I~vwd~-~~~~~~~~~~~~~~~~~h~~----~V~~l~~~p~~-~~l~sgs~D 345 (347)
...| .+ ++++ ..||.|.+||. +.-+. +++.+..... .+..++|+|-. ..|++...|
T Consensus 202 tVdp~~~nY~cs-~~dg~iAiwD~~rnien-----pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 202 TVDPFSPNYFCS-NSDGDIAIWDTYRNIEN-----PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred eecCCCCCceec-cccCceeeccchhhhcc-----HHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 6666 33 5554 45999999994 32222 3444433333 49999999964 455555544
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.07 E-value=0.00017 Score=66.24 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=83.3
Q ss_pred CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK 212 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
++.++.++.+|.++.||.................... .+..++.++.||.|..+|..+++........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~---------- 308 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDEL---------- 308 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccc----------
Confidence 4567777778888888854332222111111112222 3457788888899999988877532211000
Q ss_pred eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEE
Q 043707 213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVF 292 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~ 292 (347)
.......... .+..|++++.+|.++++|.++++.+.+++.+...+..--...++.|+
T Consensus 309 ---------------------~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~ 365 (377)
T TIGR03300 309 ---------------------KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLL 365 (377)
T ss_pred ---------------------cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEE
Confidence 0011111112 35689999999999999999999999988766543322222256788
Q ss_pred EEeCCCcEEEE
Q 043707 293 TGSADGTVKVW 303 (347)
Q Consensus 293 s~~~dg~I~vw 303 (347)
.++.||.|..|
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 99999999876
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.06 E-value=0.00056 Score=62.80 Aligned_cols=202 Identities=13% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCEEEEecCCCcEEEEeCCCc--ceeeecCCCCe-----eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc-
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE--FSGFKSNSGLV-----KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL- 204 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~--~~~~~~h~~~V-----~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~- 204 (347)
++.++.+..+|.|+.||.... ...+......+ ...... + ..++.+..+|.+..+|.++++..........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 456777888899999985432 22222211111 011122 2 3778888899999999988865433221110
Q ss_pred --------------ccc-cceEEeccCCCeEEEEee-cceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE
Q 043707 205 --------------PTF-KDYVKSSVNPKNYVEVRR-NRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 205 --------------~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~ 268 (347)
|.. ...+........+..+.. .....+........... ..+..++.++.||.+..+|..+++
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 000 011111111111111111 11122211111111111 246788888899999999999998
Q ss_pred EEEEEecCCC-cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEE-EEEEccCCCEEEEecCCC
Q 043707 269 CLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAIT-ALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 269 ~~~~~~~h~~-~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~p~~~~l~sgs~DG 346 (347)
.+-....... ....... .++.|++++.+|.|.++|..+++. ...+..+...+. ..++. + +.|+.++.||
T Consensus 301 ~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~------~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG 371 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSF------VARLKTDGSGIASPPVVV-G-DGLLVQTRDG 371 (377)
T ss_pred EEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCE------EEEEEcCCCccccCCEEE-C-CEEEEEeCCc
Confidence 7765532111 1222222 246889999999999999876542 223333332222 22222 3 4577888887
Q ss_pred C
Q 043707 347 L 347 (347)
Q Consensus 347 ~ 347 (347)
.
T Consensus 372 ~ 372 (377)
T TIGR03300 372 D 372 (377)
T ss_pred e
Confidence 3
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=2e-05 Score=72.78 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=61.2
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
.....|.+++++|+...++.|+.||.|++||...+..... ...-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----------------------------------ka~~~P 302 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----------------------------------KAEFIP 302 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----------------------------------eecccc
Confidence 4567899999999999999999999999999976632111 134457
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 043707 239 SCLSLNAEQGLLYSGSWDKTLKVWRIS 265 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~ 265 (347)
+.++|||+|.++++|+.-|.+.+||+.
T Consensus 303 ~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 303 TLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred eEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 789999999999999999999999985
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.02 E-value=0.0062 Score=52.29 Aligned_cols=169 Identities=12% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCEEEEecCCCcEEEEeCCCc-ceeeec------CCCCeeEEEEeCCCCEEEEEeCC--------CcEEEEecCCCCCce
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE-FSGFKS------NSGLVKAIIITGDSNKIFTGHQD--------GKIRIWKVSRKNPSV 197 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~-~~~~~~------h~~~V~~l~~sp~~~~l~s~~~D--------g~I~vwd~~~~~~~~ 197 (347)
+..|+.+...+ +.++|.... +..+.. .....+++++.|+|+..++.... |.|..++.. ++...
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 45555555544 555575432 222211 23468899999999877776544 335555544 22110
Q ss_pred eeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCC--C-----EE
Q 043707 198 HKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLY-SGSWDKTLKVWRISD--C-----KC 269 (347)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~vwdl~~--~-----~~ 269 (347)
. .......+.|+|+|+++.|+ +-+..+.|..+++.. . +.
T Consensus 129 --~-------------------------------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 129 --V-------------------------------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp --E-------------------------------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred --E-------------------------------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence 0 11334567899999998776 556678899998852 2 11
Q ss_pred EEEEecCCCcEEEEEeCCCCEEE-EEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc-cCCCEEEEec
Q 043707 270 LESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN-QESAVVYCGS 343 (347)
Q Consensus 270 ~~~~~~h~~~v~~i~~~~~~~l~-s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~l~sgs 343 (347)
...+....+..-.+++..+|.|. +....+.|.+++.+ ++ +...+......+++++|. ++.+.|+..+
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~-----~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GK-----LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SC-----EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--cc-----EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 22222222347788998888444 44578899999986 33 333333334489999994 6766666554
No 308
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.98 E-value=0.0026 Score=57.14 Aligned_cols=108 Identities=8% Similarity=0.011 Sum_probs=74.7
Q ss_pred CcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeC----------CCcEEEEecCCCCCceeeeecccccccce
Q 043707 143 KNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQ----------DGKIRIWKVSRKNPSVHKRVGSLPTFKDY 210 (347)
Q Consensus 143 g~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 210 (347)
++|.+.|... .+..+..-..+ ..+ ++|+++.|+.+.. +..|.+||..+.+......++..|.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence 7899998543 23333322222 234 9999998888776 789999999998866555543222110
Q ss_pred EEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-C-CCcEEEEeCCCCEEEEEEecCC
Q 043707 211 VKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-W-DKTLKVWRISDCKCLESINAHD 277 (347)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~-dg~i~vwdl~~~~~~~~~~~h~ 277 (347)
.......++++|||++|+... . +..+.|.|+.+++.+.++....
T Consensus 103 -----------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 103 -----------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred -----------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 122334688999999999876 3 6889999999999999887533
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.96 E-value=0.00076 Score=68.48 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=113.7
Q ss_pred cEEEEee--cCCEEEEecC---C---CcEEEEeCCCcce-eeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCC
Q 043707 125 HIYSLAA--SGDLLYTGSD---S---KNIRVWKNLKEFS-GFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSR 192 (347)
Q Consensus 125 ~V~~l~~--~~~~l~tg~~---d---g~I~vwd~~~~~~-~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~ 192 (347)
.-..++| ||.++|+.+. . ..||||+-...+. .-..-.+--.+++|.|.|++||+... ...|.+|.-+.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 3345555 6778888764 2 5799998553322 22223344557899999999998864 23455554332
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE--E
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC--L 270 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~--~ 270 (347)
-+. ....+.. ......|..|.|++++..|+..-.|. |.+|-..+..- .
T Consensus 291 Lrh-geF~l~~----------------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 291 LRH-GEFTLRF----------------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred cEe-eeEecCC----------------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEE
Confidence 211 0011000 02455789999999999999988665 99999887652 2
Q ss_pred EEEecC-CCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc----CCc---------------cceee-------ehh---
Q 043707 271 ESINAH-DDAINSVVAGFDS--LVFTGSADGTVKVWRREL----QGK---------------GTKHF-------LAQ--- 318 (347)
Q Consensus 271 ~~~~~h-~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~----~~~---------------~~~~~-------~~~--- 318 (347)
+.+... ...+..+.|+|.. .|.....+|.+..++..- ... ..... +.-
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 223322 2335558999975 566666667765555431 100 00000 000
Q ss_pred hhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 319 VLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 319 ~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.-..-...|.+++|++++..+++-..||
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence 0012256899999999987787777776
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=2.1e-05 Score=75.52 Aligned_cols=156 Identities=14% Similarity=0.206 Sum_probs=108.6
Q ss_pred ceeEeeeeccccEEEEeecC--CEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCC--cEEE
Q 043707 114 GLIGSIVRKEGHIYSLAASG--DLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDG--KIRI 187 (347)
Q Consensus 114 ~~i~~l~~h~~~V~~l~~~~--~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg--~I~v 187 (347)
..+++++.|+..-+|+++++ +.|+.|+..|.|++++.. .......+|..+|+-+.=+-+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 36778888998899999864 599999999999999854 44567789999999999888988777665433 4678
Q ss_pred EecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 188 WKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 188 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
|++...-...+ ....-.++.|+.....-+.|+......|||+.++
T Consensus 1172 W~~~s~~~~~H-----------------------------------sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1172 WDASSTGGPRH-----------------------------------SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred hccccccCccc-----------------------------------cccccceeehhhhHHHHHhcccccceEEEecccC
Confidence 99875321111 1234567888876544455555567889999998
Q ss_pred EEEEEE-ec---CCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707 268 KCLESI-NA---HDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 268 ~~~~~~-~~---h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~ 308 (347)
.++.++ .. ..-.-++..|+|+..|+- .||. +||++..
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVRIP 1257 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeeccH
Confidence 877663 21 111236778999873332 4553 6999843
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=8.9e-05 Score=69.68 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=79.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEE-EecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES-INAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG 311 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~-~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~ 311 (347)
+...|.--+++..+.+++.|+.-|.+++|.-..++.+.. ..+..+.+..+..+++. ++|+|+..|.|.|+.+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 444455556677789999999999999999655543322 22234445555667766 7788889999999988764432
Q ss_pred ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
........-..|...|++++|++++..|++|...|.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 222222222347889999999999999999988774
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.85 E-value=0.0017 Score=64.95 Aligned_cols=213 Identities=11% Similarity=0.046 Sum_probs=121.5
Q ss_pred ccEEEEee--cCCEEEEecCCCcEEEEeCCCcceeee-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 124 GHIYSLAA--SGDLLYTGSDSKNIRVWKNLKEFSGFK-SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 124 ~~V~~l~~--~~~~l~tg~~dg~I~vwd~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
+.|.++.+ +++-++.+..+|.|.+-|........- .-...|.+++|+||++.++-...++++.+-+-. -.+.....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhccc
Confidence 46777776 566788888889999988665433333 345689999999999999999888888764321 11111111
Q ss_pred e-cccccccceEEeccCC-CeEEEEeecceee--e---------eecCCCeeEEEEcCCCCEEEEEe----CC-CcEEEE
Q 043707 201 V-GSLPTFKDYVKSSVNP-KNYVEVRRNRNVL--K---------IRHYDAVSCLSLNAEQGLLYSGS----WD-KTLKVW 262 (347)
Q Consensus 201 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---------~~h~~~V~~l~~~~~~~~l~s~s----~d-g~i~vw 262 (347)
. ........++..++.. .+.+....++... . +...+.=+.|+|--||.++++.. .+ +.|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1 0011111122222111 1111111111000 0 01122234689999999998832 23 789999
Q ss_pred eCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEE---eCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCE
Q 043707 263 RISDCKCLESINAHDDAINSVVAGFDS-LVFTG---SADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAV 338 (347)
Q Consensus 263 dl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 338 (347)
|-+ +..-..-.....--.+++|-|.| ++++- ..|+.|.+|..+.... . ...-.+......|..++|+.++..
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h--g-~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH--G-EFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc--c-ccccCCcccccchheeeecCCCCc
Confidence 965 43322222233334678999988 55543 4567899998763222 1 111122233445999999999999
Q ss_pred EEE
Q 043707 339 VYC 341 (347)
Q Consensus 339 l~s 341 (347)
|+.
T Consensus 304 LAv 306 (1265)
T KOG1920|consen 304 LAV 306 (1265)
T ss_pred eee
Confidence 887
No 313
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.84 E-value=0.0011 Score=60.17 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=115.7
Q ss_pred EEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCc---------------EEEEecCC
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGK---------------IRIWKVSR 192 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~---------------I~vwd~~~ 192 (347)
++++.|.+|++.... .|.+|.-...-...+--...|..+.|+|++.+|.+=+..+. +.+||+.+
T Consensus 39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred eecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC
Confidence 445566677666654 47788632211222222356889999999999988765544 89999999
Q ss_pred CCCceeeeeccccccc-ceEEeccCCC----------eEEEEeecceeeee--ecCCCeeEEEEcCCC--CEEEE-----
Q 043707 193 KNPSVHKRVGSLPTFK-DYVKSSVNPK----------NYVEVRRNRNVLKI--RHYDAVSCLSLNAEQ--GLLYS----- 252 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~--~~l~s----- 252 (347)
+...........+... .++....+.. .+.++...-..... -....|...+|+|.+ ..|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk 197 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK 197 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc
Confidence 8765444333333111 1222222222 11221110000000 012457788888863 33443
Q ss_pred EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE----EEe-------CCCcEEEEEcccCCccceeeehhhh
Q 043707 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF----TGS-------ADGTVKVWRRELQGKGTKHFLAQVL 320 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~----s~~-------~dg~I~vwd~~~~~~~~~~~~~~~~ 320 (347)
...++.++||.+..++.+.+....+..-..+.|.+.| +|+ +-. ....+++++++ ++ -....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~-----~i~V~ 270 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ER-----SIPVE 270 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec--cc-----cccee
Confidence 3558889999998777665543333333567888776 221 111 12467777776 22 12222
Q ss_pred hccCCcEEEEEEccCCCEEEEec
Q 043707 321 LKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 321 ~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..-.++|.+.+|.|.++.+++.+
T Consensus 271 ~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 271 KDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccccccceeeeecccCCceeEEe
Confidence 24577999999999987766654
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=8.4e-05 Score=65.40 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=68.8
Q ss_pred eeecCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEccc
Q 043707 231 KIRHYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 231 ~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~ 307 (347)
..++...|..++|+|..+ ++..++.+.+|+|.|+++..++..+.++ ..+++++|.-+. +|++|-..|.|.|||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 345788899999999765 7889999999999999999999999988 779999998765 999999999999999986
Q ss_pred CC
Q 043707 308 QG 309 (347)
Q Consensus 308 ~~ 309 (347)
..
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 54
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.80 E-value=0.0018 Score=47.27 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=67.5
Q ss_pred eeEEEEcC---C-CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccce
Q 043707 238 VSCLSLNA---E-QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 238 V~~l~~~~---~-~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~ 313 (347)
|++|++.. + .+.|++|+.|..|+||+ ..+.+..+.. .+.|.++.-...+.|+.+-.+|+|-+|+... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--R--- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--R--- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--e---
Confidence 55666654 3 36899999999999998 3467777764 4567888877778999999999999998741 1
Q ss_pred eeehhhhhccCCcEEEEEEcc-C--C-CEEEEecCCC
Q 043707 314 HFLAQVLLKQENAITALAVNQ-E--S-AVVYCGSSDG 346 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p-~--~-~~l~sgs~DG 346 (347)
+.+.-. ...++++++.. + | ..|++|=.+|
T Consensus 74 --lWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnG 106 (111)
T PF14783_consen 74 --LWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNG 106 (111)
T ss_pred --eeeecc--CCCeEEEEEEcCCCCCceEEEEEecCC
Confidence 122212 23466666554 2 2 4788887776
No 316
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=67.35 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE-EEEeCCCC-EEEEEeCCCcEEEEEcccCCccc
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDS-LVFTGSADGTVKVWRRELQGKGT 312 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~-~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~ 312 (347)
...|.-+.|+|.-.++|.+..+|.+.+..+. .+.+-++..|...++ +++|.||| +||.|-.||+|++-|.+.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 4457789999999999999999999999998 888889987877777 99999999 888999999999999986654
Q ss_pred eeeehhhhhccCCcEEEEEEcc
Q 043707 313 KHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 313 ~~~~~~~~~~h~~~V~~l~~~p 334 (347)
+..........|.++.|.+
T Consensus 97 ---l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ---LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ---eeccccccccchheeeccc
Confidence 3343444567888888864
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.71 E-value=0.0061 Score=51.80 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=89.3
Q ss_pred ecCCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707 131 ASGDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK 208 (347)
Q Consensus 131 ~~~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 208 (347)
..++.+++++.++.|+.||.. +.+..+.. .+.+.... ...+..++.+..|+.|+.+|..+++..........+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-- 109 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-- 109 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT--
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccc--
Confidence 367778888889999999953 33333333 22222111 2234477777788999999999887544321110000
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc---------
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA--------- 279 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~--------- 279 (347)
.. ....+.....+..++.+..++.|..+|+++|+.+-........
T Consensus 110 -------------------------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 110 -------------------------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp -------------------------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred -------------------------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 00 1111222223778888888999999999999998888764422
Q ss_pred --EEEEEeCCCCEEEEEeCCCc-EEEEEcccCC
Q 043707 280 --INSVVAGFDSLVFTGSADGT-VKVWRRELQG 309 (347)
Q Consensus 280 --v~~i~~~~~~~l~s~~~dg~-I~vwd~~~~~ 309 (347)
...+.+. ++.++.+..++. +.+ |+.++.
T Consensus 164 ~~~~~~~~~-~~~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 164 DINGSPVIS-DGRVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp TEEEEEECC-TTEEEEECCTSSEEEE-ETTTTE
T ss_pred ccccceEEE-CCEEEEEcCCCeEEEE-ECCCCC
Confidence 1233333 457778887885 555 887654
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0019 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred EEEEeecCC--EEEEecCCCcEEEEeCCC--cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707 126 IYSLAASGD--LLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 126 V~~l~~~~~--~l~tg~~dg~I~vwd~~~--~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~ 192 (347)
+++++|... .|+.|-.-|.+.+|.... .......|..+|..+.|+++|..++|+..-|.|.+|..+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 445666644 788999999999998542 2444567999999999999999999999999999998873
No 319
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.64 E-value=0.0027 Score=57.84 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=100.2
Q ss_pred cEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe--CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeE
Q 043707 144 NIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH--QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNY 220 (347)
Q Consensus 144 ~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
+++|+++.+. +.....-.++|...+|.|.++.|++++ .+-.+.++|++..- ...
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~--------------------- 312 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFY--------------------- 312 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce--EEe---------------------
Confidence 5667775432 333335578999999999888766655 77889999998651 111
Q ss_pred EEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCC-EEEEEEecCCCcEEEEEeCCCC-EEEEE-
Q 043707 221 VEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWD---KTLKVWRISDC-KCLESINAHDDAINSVVAGFDS-LVFTG- 294 (347)
Q Consensus 221 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---g~i~vwdl~~~-~~~~~~~~h~~~v~~i~~~~~~-~l~s~- 294 (347)
.-...=+.+.|+|.+++++.++-| |.|-+||.... +++..+.+-.. .-+.|+||+ ++.+.
T Consensus 313 ------------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ 378 (561)
T COG5354 313 ------------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDT 378 (561)
T ss_pred ------------cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecC
Confidence 122333567899999999987765 66999998654 34446665443 446899998 33332
Q ss_pred -e----CCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 295 -S----ADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 295 -~----~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
+ .|..|+|||+.... .. ..+.+.|.|.+++..+.+.++
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~-------~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAK-------VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCcccccCcceEEEEecCch-------hh-------hhhhccccCCcccceeeccCC
Confidence 2 47899999996221 11 456777888777766666543
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.61 E-value=0.018 Score=50.18 Aligned_cols=184 Identities=16% Similarity=0.287 Sum_probs=107.9
Q ss_pred EEeecCCEEEEe-----cCCCcEEEEeCCCc---ceeeecCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEEecCC
Q 043707 128 SLAASGDLLYTG-----SDSKNIRVWKNLKE---FSGFKSNSGLVKAIIITGDSNKIFTGHQ-------DGKIRIWKVSR 192 (347)
Q Consensus 128 ~l~~~~~~l~tg-----~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~-------Dg~I~vwd~~~ 192 (347)
+++.+|++|++. ...|.|-|||.... +..+..|.-.-..+.+.|||+.|+.+-. .|..++ ++.+
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chhh
Confidence 567789988886 34588999997633 4556666666778899999977776631 122222 2222
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceee---e--eecCCCeeEEEEcCCCCEEEEEeCCCc-------EE
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVL---K--IRHYDAVSCLSLNAEQGLLYSGSWDKT-------LK 260 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~h~~~V~~l~~~~~~~~l~s~s~dg~-------i~ 260 (347)
.++... +++..+..... + ..|...|..|++.++|..++..-+.|. +-
T Consensus 136 M~psL~---------------------~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 136 MQPSLV---------------------YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred cCCceE---------------------EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence 221111 11111111110 1 126677999999999887776655443 33
Q ss_pred EEeCCCCEEEEEEe-------cCCCcEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEE
Q 043707 261 VWRISDCKCLESIN-------AHDDAINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALA 331 (347)
Q Consensus 261 vwdl~~~~~~~~~~-------~h~~~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 331 (347)
+++ .++.+..+. .-.+.+-+|+++.++ ++ +|+-..+.+.+||..++.- +... .-..+..|+
T Consensus 195 ~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~------~~~~--~l~D~cGva 264 (305)
T PF07433_consen 195 LHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL------LGSV--PLPDACGVA 264 (305)
T ss_pred EEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE------eecc--ccCceeeee
Confidence 333 333333332 234678999999987 44 5566899999999985532 2211 123566677
Q ss_pred EccCCCEEEEecC
Q 043707 332 VNQESAVVYCGSS 344 (347)
Q Consensus 332 ~~p~~~~l~sgs~ 344 (347)
-.+++ ++++.+.
T Consensus 265 ~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 265 PTDDG-FLVSSGQ 276 (305)
T ss_pred ecCCc-eEEeCCC
Confidence 66665 6665543
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.60 E-value=0.012 Score=43.10 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=66.4
Q ss_pred eeEEEEeC-CC---CEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 164 VKAIIITG-DS---NKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 164 V~~l~~sp-~~---~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
|.+|++.. ++ +.|+.|+.|..||+|+-+.- ... +.-.+.|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~E---------------------------------i~e~~~v~ 46 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAE---------------------------------ITETDKVT 46 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEE---------------------------------EecccceE
Confidence 56777655 32 57999999999999986422 111 12456677
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC-CC--C--EEEEEeCCCcEEE
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG-FD--S--LVFTGSADGTVKV 302 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~-~~--~--~l~s~~~dg~I~v 302 (347)
+|+-... ..++.+-.+|+|-+|+- .+.+-..+.... +.++.+. .+ | .|++|-.+|.|-+
T Consensus 47 ~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 47 SLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 7776655 66888889999999985 333334443333 5666543 33 3 7999999998753
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00014 Score=41.51 Aligned_cols=36 Identities=22% Similarity=0.593 Sum_probs=28.9
Q ss_pred ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 154 FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 154 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
...+..|...|.+++|.+++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778888888888878888888888888885
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.59 E-value=0.042 Score=47.99 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=95.9
Q ss_pred cCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEEecCCCCCceeeeecccccccceEEec
Q 043707 140 SDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-----DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS 214 (347)
Q Consensus 140 ~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-----Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (347)
..+|.+..+-....-+.|.+| -+|++||++|++.-. .|.|-|||....- ..+...+.
T Consensus 35 ~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~----~ri~E~~s-------- 96 (305)
T PF07433_consen 35 CRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGY----RRIGEFPS-------- 96 (305)
T ss_pred cCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCc----EEEeEecC--------
Confidence 344444444333444556666 379999999998754 4789999998332 11111111
Q ss_pred cCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEE------------------eCCCcEEEEeCCCCEEEEEEe--
Q 043707 215 VNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSG------------------SWDKTLKVWRISDCKCLESIN-- 274 (347)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~------------------s~dg~i~vwdl~~~~~~~~~~-- 274 (347)
|.-.-..+.+.||+..|+++ ..+-.+...|..+|+.+.+..
T Consensus 97 -------------------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 97 -------------------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred -------------------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 22223345566666555544 234446666777888777743
Q ss_pred --cCCCcEEEEEeCCCCEEEEEeC-CC-------cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 275 --AHDDAINSVVAGFDSLVFTGSA-DG-------TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 275 --~h~~~v~~i~~~~~~~l~s~~~-dg-------~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
-|+..|..+++.++|.++.+.. .| -|-+++....-. ...........-..-|-+|++++++.++++.+-
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 3777899999999986665542 22 233333321100 000111222334567889999999998887764
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.58 E-value=0.0041 Score=57.51 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=77.9
Q ss_pred CCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707 133 GDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK 212 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
++.++.++.+|.+..+|........+...+....+.. .+..++.++.+|.|..+|..+++..-.....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---------- 323 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL---------- 323 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc----------
Confidence 3445555666666666644322222111111111222 3446777777888888887776532111000
Q ss_pred eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEE-EEeCCCCEE
Q 043707 213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS-VVAGFDSLV 291 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~-i~~~~~~~l 291 (347)
.+ ........ .+..|+.++.||.+.+.|..+++.+...+.....+.+ ..+ .++.|
T Consensus 324 --------------------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l 379 (394)
T PRK11138 324 --------------------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKL 379 (394)
T ss_pred --------------------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEE
Confidence 00 01111111 2567888999999999999999998887654333332 122 25689
Q ss_pred EEEeCCCcEEEEEc
Q 043707 292 FTGSADGTVKVWRR 305 (347)
Q Consensus 292 ~s~~~dg~I~vwd~ 305 (347)
+.++.||.|..+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 99999999988764
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00031 Score=39.99 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=33.2
Q ss_pred CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707 267 CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWR 304 (347)
Q Consensus 267 ~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd 304 (347)
++++..+..|...|.++.|.+++ ++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677788899999999999875 899999999999996
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.0028 Score=60.67 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=102.6
Q ss_pred EEeec-CCEEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCC------------CEEEEEeCCCcEEEEecCC
Q 043707 128 SLAAS-GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDS------------NKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 128 ~l~~~-~~~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~------------~~l~s~~~Dg~I~vwd~~~ 192 (347)
+++|+ +.++|-|+. ..|.+-|.. +.++.+..|...|+.+.|.|.. -.|+++...|.|.+||...
T Consensus 20 A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~ 98 (1062)
T KOG1912|consen 20 AADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL 98 (1062)
T ss_pred ccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence 55665 346666664 478888843 6688888999999999997742 2577788889999999987
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC---C-CEEEEEeCCCcEEEEeCCCCE
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE---Q-GLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~-~~l~s~s~dg~i~vwdl~~~~ 268 (347)
+....... .|.+++..++|-+. . ..|+.-....++.+|+..+|+
T Consensus 99 ~s~~~~l~--------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 99 ASVINWLS--------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred hhhhhhhc--------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence 75433222 37778888888762 3 567777778899999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEc
Q 043707 269 CLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRR 305 (347)
Q Consensus 269 ~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~ 305 (347)
..-....-.....|+.+.|=. .+..-+..|.|-+-+.
T Consensus 147 k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 147 KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 887777666677778777632 4444445555555543
No 327
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00038 Score=64.83 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee-E
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS-C 240 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~ 240 (347)
..|.-+.|+|.-..||.+..+|.|.+..+.-.+ .. ..| -+...++ +
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lw-----tip---------------------------~p~~~v~~s 67 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LW-----TIP---------------------------IPGENVTAS 67 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccce-eE-----ecc---------------------------CCCCcccee
Confidence 457889999988899999999999988876222 11 111 1555566 9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeCC
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAGF 287 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~~ 287 (347)
++|.|||++|+.|-.||+|++.|..++..+..+. .....|.++.|.+
T Consensus 68 L~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 68 LCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999999999999998877732 2456677787753
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00073 Score=59.68 Aligned_cols=154 Identities=8% Similarity=0.112 Sum_probs=94.4
Q ss_pred EEEEeC--CCcceeeecCCCCeeEEEEeCCCC-EEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEE
Q 043707 145 IRVWKN--LKEFSGFKSNSGLVKAIIITGDSN-KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYV 221 (347)
Q Consensus 145 I~vwd~--~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
|++.+. .+....+..|...|.+++|+|..+ .+..++.+.+|+|.|+++........
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------------------- 233 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------------------- 233 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence 555542 233445667788999999999655 78999999999999999875432222
Q ss_pred EEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCEE-EEEEec--CCCcEEEEEeC------C-CCE
Q 043707 222 EVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISDCKC-LESINA--HDDAINSVVAG------F-DSL 290 (347)
Q Consensus 222 ~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~~~~-~~~~~~--h~~~v~~i~~~------~-~~~ 290 (347)
.+ ..+++++|.-+ .++|+.|...|.|.|||++..+- +..+.+ ...+|..|+.- + .|+
T Consensus 234 -----------a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 234 -----------AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred -----------cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 13 78899999886 57889999999999999987542 222222 12334443321 1 235
Q ss_pred EEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCC
Q 043707 291 VFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQES 336 (347)
Q Consensus 291 l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~ 336 (347)
++....+ +..|.+..... ..+...-.+..+...++..++-.
T Consensus 302 Lv~~lt~--l~f~ei~~s~~---~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 302 LVFALTV--LQFYEIVFSAE---CLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred EEeeehh--hhhhhhhcccc---CCCcccccCCCcceeeeeecCcc
Confidence 5554444 45676653221 11111112234456666666643
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.49 E-value=0.003 Score=62.17 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEEEEeCCCC--EEEEE-Ee--cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc
Q 043707 248 GLLYSGSWDKTLKVWRISDC--KCLES-IN--AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK 322 (347)
Q Consensus 248 ~~l~s~s~dg~i~vwdl~~~--~~~~~-~~--~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 322 (347)
.--+.|-.+..+..||.|-. +++.. .+ .......|++-..+|+||+|+.+|.||+||.- +.+ ....+.+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~-----AKT~lp~ 616 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR-----AKTALPG 616 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh-----hhhcCCC
Confidence 34566777889999999853 23311 11 23456788888889999999999999999953 222 3344556
Q ss_pred cCCcEEEEEEccCCCEEEEecC
Q 043707 323 QENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 323 h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
-..+|.+|..+.||++|++.+.
T Consensus 617 lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCeeEEEecCCCcEEEEeec
Confidence 6889999999999999887764
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.01 Score=54.45 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=88.1
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCce-eeeecccccccceEEeccCCCeEEEEeec----------ceeee
Q 043707 163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSV-HKRVGSLPTFKDYVKSSVNPKNYVEVRRN----------RNVLK 231 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 231 (347)
.|..+.|.++...|+.|...|.|.||.....+... ............-+........++++... ...+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58889999998899999999999999887654322 11000000000001111112223332221 11122
Q ss_pred eecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe--c------CCCcEEEEEeC-----CCC----EEEEE
Q 043707 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN--A------HDDAINSVVAG-----FDS----LVFTG 294 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~--~------h~~~v~~i~~~-----~~~----~l~s~ 294 (347)
....++|++++.+ +=.+++.|..+|.+.|.|+|....+..-. . ....|+++.|. .|+ .+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2347899999987 55699999999999999999888776632 1 23467788775 233 78899
Q ss_pred eCCCcEEEEEcccCCc-cceeeehhhhhccCCcEEEEE
Q 043707 295 SADGTVKVWRRELQGK-GTKHFLAQVLLKQENAITALA 331 (347)
Q Consensus 295 ~~dg~I~vwd~~~~~~-~~~~~~~~~~~~h~~~V~~l~ 331 (347)
...|.+.+|.+..... ............+.+.|..|.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~ 199 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII 199 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence 9999999999863221 111112222234556666655
No 331
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.45 E-value=0.022 Score=48.36 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCEEEEecCCCcEEEEeCCCc--ceee-ecCC---CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE--FSGF-KSNS---GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~--~~~~-~~h~---~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~ 206 (347)
+..++.+..++.|+.+|.... .... .... ...........+..++.+..++.|..+|.++++..........+.
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 556677777888999984433 3331 2111 111222222236688889889999999999997654444321110
Q ss_pred ccceEEeccCCCeEEEEeecceeeeeecCCCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV-SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~ 285 (347)
...+ .....+ ..+.+. ++ .++.+..++.+..+|+.+++.+-... ...+..+..
T Consensus 156 ~~~~----------------------~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~ 209 (238)
T PF13360_consen 156 SSPI----------------------SSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPS 209 (238)
T ss_dssp S--E----------------------EEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEE
T ss_pred Ccce----------------------eeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCce
Confidence 0000 000111 222222 34 77777778864444999999764333 333444334
Q ss_pred CCCCEEEEEeCCCcEEEEEcccCC
Q 043707 286 GFDSLVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 286 ~~~~~l~s~~~dg~I~vwd~~~~~ 309 (347)
..++.|+.++.++.|..||+++++
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCC
Confidence 445677777799999999998654
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00019 Score=69.34 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=102.1
Q ss_pred CCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeeccee
Q 043707 150 NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNV 229 (347)
Q Consensus 150 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (347)
-.+..+.|..|...-+|++|+.+.+.|+.|+..|.|+++++.++.......
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------------------- 1140 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------------------- 1140 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-----------------------------
Confidence 345567788899999999999999999999999999999999986433322
Q ss_pred eeeecCCCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEc
Q 043707 230 LKIRHYDAVSCLSLNAEQGLLYSGSWDK--TLKVWRISD-CKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRR 305 (347)
Q Consensus 230 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~ 305 (347)
.|..+|+-+.=+.+|..+++.+.-. -..+|++.. +...++|.. -.++.|+... .-+.|.......+||+
T Consensus 1141 ---cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1141 ---CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred ---ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEec
Confidence 4999999998888988777765433 467899864 455555542 3456776543 2234444567889999
Q ss_pred ccCCccceeeehhh-hhc---cCCcEEEEEEccCCCEEE
Q 043707 306 ELQGKGTKHFLAQV-LLK---QENAITALAVNQESAVVY 340 (347)
Q Consensus 306 ~~~~~~~~~~~~~~-~~~---h~~~V~~l~~~p~~~~l~ 340 (347)
++... +++ +.. .+..=+...|+|+..+|.
T Consensus 1214 qT~~~------l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1214 QTCSP------LQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccCcH------HHHhcCcchhhhhhccccccCCCcceEe
Confidence 86543 222 111 112225667777666554
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.12 Score=47.98 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=36.9
Q ss_pred cEEEEeC-CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 144 NIRVWKN-LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 144 ~I~vwd~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
.|+||+. ++.+..+.-..+.|.++.|+.+. .|+.-..||.++++|+...
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 4888883 45555555445899999998864 6677778999999998643
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.30 E-value=0.061 Score=49.72 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC-cEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~-~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~ 309 (347)
.+..++.++.+|.+..+|..+++.+-....-.. ...+... -++.|+.++.||.|.+.|..+++
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCC
Confidence 356788888899999999999987644322111 1111222 26788899999999999987654
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.11 Score=48.17 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=91.7
Q ss_pred ccceeEeeeeccccEEEEeec-CCEEEEecCCCcEEEEeCCCcc--------eeeecCCCCeeEEEEeCCCCEEEEEeCC
Q 043707 112 CNGLIGSIVRKEGHIYSLAAS-GDLLYTGSDSKNIRVWKNLKEF--------SGFKSNSGLVKAIIITGDSNKIFTGHQD 182 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~-~~~l~tg~~dg~I~vwd~~~~~--------~~~~~h~~~V~~l~~sp~~~~l~s~~~D 182 (347)
.+.++.++.--.+.|.++.|. .+.|+.-..||.++++|..... .........+....+..+|-.+++. +
T Consensus 69 sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~ 146 (410)
T PF04841_consen 69 SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--N 146 (410)
T ss_pred CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECC--C
Confidence 334455655555899999985 4577788899999999964333 1111111222233333355333433 3
Q ss_pred CcEEEEecCCCCCceeeeecccccccc----------eEEeccCCCeEEEEeecceeeeee--------cCCCeeEEEEc
Q 043707 183 GKIRIWKVSRKNPSVHKRVGSLPTFKD----------YVKSSVNPKNYVEVRRNRNVLKIR--------HYDAVSCLSLN 244 (347)
Q Consensus 183 g~I~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--------h~~~V~~l~~~ 244 (347)
+.+.+-+--... .........|.... ......+....+....+.....+. ..+++..|+++
T Consensus 147 ~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavS 225 (410)
T PF04841_consen 147 NRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVS 225 (410)
T ss_pred CeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEEC
Confidence 444333221111 01111111111110 011111222222222222222111 23579999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-CCcEEEEEeCCCC
Q 043707 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDS 289 (347)
Q Consensus 245 ~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~ 289 (347)
|++++++.-..+|.+.|....-.+.+..+... ......+.|.-+.
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 99999999999999999987666666666544 3455677776554
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0016 Score=62.87 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=63.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
.+++++|+|..-.|+.|=.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|.....+
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 45679999998888888888999999988777666667899999999999998 89999999999999887443
No 337
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0093 Score=54.92 Aligned_cols=102 Identities=12% Similarity=0.193 Sum_probs=71.2
Q ss_pred CeeEEEEcCCCC-------EEEEEeCCCcEEEEeCCCC-E-EEEEEecC----CCcEEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 237 AVSCLSLNAEQG-------LLYSGSWDKTLKVWRISDC-K-CLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVW 303 (347)
Q Consensus 237 ~V~~l~~~~~~~-------~l~s~s~dg~i~vwdl~~~-~-~~~~~~~h----~~~v~~i~~~~~~~l~s~~~dg~I~vw 303 (347)
.|+-+.+.|+.. .-+.|-.|..|.-||.|-. + .+...+.| .....|.+-..+|+|++|+.+|.|++|
T Consensus 377 di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 377 DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY 456 (644)
T ss_pred CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence 366666666532 2244556888999998732 2 22222333 234677777788999999999999999
Q ss_pred EcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 304 RRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 304 d~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
|. .+.. ....+.+-..+|+.|..+.+|++|++.+.
T Consensus 457 dr-i~~~-----AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 457 DR-IGRR-----AKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred hh-hhhh-----hhhcccccCCceeeEEeeccCcEEEEecc
Confidence 98 3322 34456677889999999999998887664
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.16 E-value=0.016 Score=58.42 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEE
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCL 241 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 241 (347)
+.|.++.|..++..++.+..+|.|.+-|..+....... .-...|.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------------------------------~vd~GI~aa 115 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------------------------------NVDNGISAA 115 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------------------------------eccCceEEE
Confidence 68999999999999999999999999987765422211 145789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC----C-------------------CEEEEEEecC---------------------C
Q 043707 242 SLNAEQGLLYSGSWDKTLKVWRIS----D-------------------CKCLESINAH---------------------D 277 (347)
Q Consensus 242 ~~~~~~~~l~s~s~dg~i~vwdl~----~-------------------~~~~~~~~~h---------------------~ 277 (347)
+|+||+.+++..+.++++.+-+-. . |+.-..|++. .
T Consensus 116 swS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 116 SWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred eecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc
Confidence 999999999999888877665421 0 1111122211 1
Q ss_pred CcEEEEEeCCCC-EEEEE----eCC-CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 278 DAINSVVAGFDS-LVFTG----SAD-GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 278 ~~v~~i~~~~~~-~l~s~----~~d-g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
+.-++|.|--|| ++|+. ..+ +.|+|||.+ +. +-..-......=.+++|-|.|..+++-..
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~------Lns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA------LNSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch------hhcccCcccccccceeecCCCCeEeeeee
Confidence 122458898888 66652 234 899999997 21 11111112233457899998888887544
No 339
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.07 Score=51.78 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=100.7
Q ss_pred EEeecCCEEEEec------CCC--cEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCC-CcEEEEecCCCCCcee
Q 043707 128 SLAASGDLLYTGS------DSK--NIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD-GKIRIWKVSRKNPSVH 198 (347)
Q Consensus 128 ~l~~~~~~l~tg~------~dg--~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D-g~I~vwd~~~~~~~~~ 198 (347)
+++++|+.++... .|. .|.+++.......+.. ......-.|+|+|..|++.... ..+++.+-........
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~ 434 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLAR 434 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEE
Confidence 3556777554443 243 4444454433333322 2247888999998888877643 2233333221111110
Q ss_pred eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEE---EeCCCCE-EE---E
Q 043707 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKV---WRISDCK-CL---E 271 (347)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~v---wdl~~~~-~~---~ 271 (347)
..+ ....... .....|..+.|+|||..++... ++.|+| -....++ .+ .
T Consensus 435 ~~v----------------------d~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~ 489 (591)
T PRK13616 435 TPV----------------------DASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPR 489 (591)
T ss_pred Eec----------------------cCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccE
Confidence 000 0000000 2356799999999999888766 577777 4444453 11 1
Q ss_pred EEe-cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhc--cCCcEEEEEEccCCCEEEEecCCC
Q 043707 272 SIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLK--QENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 272 ~~~-~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+. .-...+..+.|..++.|+++..++...+|.+...+... ..+.. ....+.+|+-.+. .|+.+..+|
T Consensus 490 ~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-----~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 490 EVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-----DALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred EeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccc-----cccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 122 22334678999999866677666667778776555411 11122 2557788887763 455555554
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.059 Score=52.57 Aligned_cols=163 Identities=13% Similarity=0.225 Sum_probs=103.8
Q ss_pred eeEeeeecccc-EEEEeec-C-CEEEEecCCC-----cEEEEeCCCc--------c---eeee----cCCCCeeEEEEeC
Q 043707 115 LIGSIVRKEGH-IYSLAAS-G-DLLYTGSDSK-----NIRVWKNLKE--------F---SGFK----SNSGLVKAIIITG 171 (347)
Q Consensus 115 ~i~~l~~h~~~-V~~l~~~-~-~~l~tg~~dg-----~I~vwd~~~~--------~---~~~~----~h~~~V~~l~~sp 171 (347)
++..+..++.. |.-+... + .+|++-++|+ .|+||+..+. + +.+. ....++.+++++.
T Consensus 56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc
Confidence 33555555555 3333332 2 4787777665 4899984422 1 1111 1345788999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCE-E
Q 043707 172 DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGL-L 250 (347)
Q Consensus 172 ~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l 250 (347)
+-+.++.|-.+|.|..+.-+--+... .+........++|+.+++..++.. +
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrg----------------------------sr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRG----------------------------SRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccc----------------------------cceeeeccCCCCceeeEEecCCceeE
Confidence 88899999999999988644221100 011111235678999999988776 4
Q ss_pred EEEeCCCcEEEEeCCCCEE-EEEEecCCCcEEEEEeCCCCE-EEEEeCCCcEEEEEccc
Q 043707 251 YSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDSL-VFTGSADGTVKVWRREL 307 (347)
Q Consensus 251 ~s~s~dg~i~vwdl~~~~~-~~~~~~h~~~v~~i~~~~~~~-l~s~~~dg~I~vwd~~~ 307 (347)
+++. -..|.+|.+....+ +..+..|...++|..+++... ++++ .+.-|.+|+...
T Consensus 188 Fv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 188 FVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDG 244 (933)
T ss_pred EEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCC
Confidence 4444 45799999973332 455778888999999987654 5444 345789998873
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.016 Score=53.71 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=88.6
Q ss_pred eeecCCCCeeEEEEeCCCCEEEEEe---CC-CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeee
Q 043707 156 GFKSNSGLVKAIIITGDSNKIFTGH---QD-GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLK 231 (347)
Q Consensus 156 ~~~~h~~~V~~l~~sp~~~~l~s~~---~D-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
.+..-...+..-+|+|++..++-.. .. ..+.++|+.+++......
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------------------------- 235 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------------------------------- 235 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-------------------------------
Confidence 3333445677778999887655442 22 358888888876433222
Q ss_pred eecCCCeeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcc
Q 043707 232 IRHYDAVSCLSLNAEQGLLYS-GSWDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 232 ~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~ 306 (347)
....-..-+|+|||+.|+- ...||. |.+.|+.... +..+..-.+.-..=.|+||| ++++.+..|.-.||-..
T Consensus 236 --~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 236 --FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred --cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence 2223334689999876655 445666 6666776655 33343222222244689998 66677788877777665
Q ss_pred cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
..+.. .+.+......-..-.|+|||++|+..+.
T Consensus 313 ~~g~~-----~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 313 LEGSQ-----VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCCc-----eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 44431 1222222222227789999999887764
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.07 E-value=0.02 Score=53.35 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=85.4
Q ss_pred EEeecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEE-ecCCCCCceeeeeccccc
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIW-KVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw-d~~~~~~~~~~~~~~~~~ 206 (347)
...++|++++.++ ||...|+........ ..+.-...+|.+.+ .+|+-...++|.|+ +++... .....
T Consensus 39 s~npngr~v~V~g-~geY~iyt~~~~r~k---~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-~k~i~------ 106 (443)
T PF04053_consen 39 SHNPNGRFVLVCG-DGEYEIYTALAWRNK---AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV-VKSIK------ 106 (443)
T ss_dssp EE-TTSSEEEEEE-TTEEEEEETTTTEEE---EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-T----------
T ss_pred EECCCCCEEEEEc-CCEEEEEEccCCccc---ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-ceEEc------
Confidence 4556788887744 677888873322211 12445577888844 67777778889996 332221 11111
Q ss_pred ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~ 286 (347)
-...+..|-. |.+|...+.+ .|.+||+.+++.+..+... +|..+.|+
T Consensus 107 ---------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 107 ---------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp ----------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred ---------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 1112333332 7777777644 8999999999999999743 48999999
Q ss_pred CCC-EEEEEeCCCcEEEEEcccC------CccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 287 FDS-LVFTGSADGTVKVWRRELQ------GKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 287 ~~~-~l~s~~~dg~I~vwd~~~~------~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
+++ +++..+ +..+.|++.... ..+.. .....+..-...|.+.+|..+ -+|++.
T Consensus 154 ~~g~~val~t-~~~i~il~~~~~~~~~~~~~g~e-~~f~~~~E~~~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 154 DDGELVALVT-KDSIYILKYNLEAVAAIPEEGVE-DAFELIHEISERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp TTSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-G-GGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred CCCCEEEEEe-CCeEEEEEecchhcccccccCch-hceEEEEEecceeEEEEEEcC-EEEEEc
Confidence 998 555554 557888877633 00000 011111122457888888766 444443
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.04 E-value=0.00019 Score=66.83 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=101.7
Q ss_pred eeeeccccEEEEeec---CCEEEEe----cCCCcEEEEeCCCcce------eeec-CCCCeeEEEEeCCCCEEEEEeCCC
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTG----SDSKNIRVWKNLKEFS------GFKS-NSGLVKAIIITGDSNKIFTGHQDG 183 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg----~~dg~I~vwd~~~~~~------~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg 183 (347)
...+|....++++|+ .+.||.| -.|..+.|||....+. .|.+ -......++|..+.+.+++|....
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 344555667778875 3577777 3456799999553321 2222 223456888888888899999999
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-CCCEEEEEeCCCcEEEE
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA-EQGLLYSGSWDKTLKVW 262 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~vw 262 (347)
.++++|++....... .+ ....+..+...| .++++++-. ||.|.+|
T Consensus 177 ~~~ifdlRqs~~~~~-sv--------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiw 222 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVS-SV--------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIW 222 (783)
T ss_pred hhhhhhhhhhhhhhh-hh--------------------------------hhhhcccceecCCCCCceeccc-cCceeec
Confidence 999999984321110 00 233456677788 566776655 9999999
Q ss_pred e-CCCCE-EEEEEecC----CCcEEEEEeCCC--CEEEEEeC-CCcEEEEEcccC
Q 043707 263 R-ISDCK-CLESINAH----DDAINSVVAGFD--SLVFTGSA-DGTVKVWRRELQ 308 (347)
Q Consensus 263 d-l~~~~-~~~~~~~h----~~~v~~i~~~~~--~~l~s~~~-dg~I~vwd~~~~ 308 (347)
| .+.-+ ++..+... ...+..++|.|- |++++... .++|+++|+...
T Consensus 223 D~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 9 44333 22222211 224889999996 57877775 478999998743
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.98 E-value=0.082 Score=47.38 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=100.5
Q ss_pred CEEEEecC----------CCcEEEEeCCC------cceee--ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC-
Q 043707 134 DLLYTGSD----------SKNIRVWKNLK------EFSGF--KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN- 194 (347)
Q Consensus 134 ~~l~tg~~----------dg~I~vwd~~~------~~~~~--~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~- 194 (347)
.+|+.|.. .|.|.+++..+ .++.. ....++|.+|+-. ++ +|+.+. .+.|.+|++...+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc
Confidence 47776633 28899998665 22222 3356889999877 33 555444 5799999998876
Q ss_pred CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CEEEEEE
Q 043707 195 PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESI 273 (347)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-~~~~~~~ 273 (347)
....... .....+.++... +++++.|+....+.++..+. .+.+..+
T Consensus 120 l~~~~~~-------------------------------~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 120 LLKKAFY-------------------------------DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp EEEEEEE--------------------------------BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred chhhhee-------------------------------cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 2111110 122345555544 56999999888888875543 3333333
Q ss_pred e--cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcc--cee-eehhhhhcc-CCcEEEE---EEcc--CCC----
Q 043707 274 N--AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKG--TKH-FLAQVLLKQ-ENAITAL---AVNQ--ESA---- 337 (347)
Q Consensus 274 ~--~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~--~~~-~~~~~~~~h-~~~V~~l---~~~p--~~~---- 337 (347)
. .....+.++.+-.++ .++++..+|.|.++........ ... .+.....-| ...|+++ ++.| .+.
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~ 246 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN 246 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence 2 234567888776444 9999999999999988632110 011 122222223 4567877 5555 222
Q ss_pred --EEEEecCCC
Q 043707 338 --VVYCGSSDG 346 (347)
Q Consensus 338 --~l~sgs~DG 346 (347)
.++.++.+|
T Consensus 247 ~~~i~~~T~~G 257 (321)
T PF03178_consen 247 RPQILYGTVDG 257 (321)
T ss_dssp EEEEEEEETTS
T ss_pred cceEEEEecCC
Confidence 366666666
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0084 Score=59.57 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=59.4
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCCCcceee---ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeee
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF---KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRV 201 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~ 201 (347)
.+.+.+.-+..++.|+..|.|-..|....+..+ ..-.++|++++|+.+|..++.|-.+|.|.+||+..++.......
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 344555556789999999999998865543321 22357999999999999999999999999999998876554444
Q ss_pred c
Q 043707 202 G 202 (347)
Q Consensus 202 ~ 202 (347)
.
T Consensus 171 ~ 171 (1206)
T KOG2079|consen 171 H 171 (1206)
T ss_pred c
Confidence 3
No 346
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.91 E-value=0.18 Score=43.55 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=88.6
Q ss_pred CeeEEEEeCCCCEEEEEe---CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 163 LVKAIIITGDSNKIFTGH---QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~~---~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
.+...+++++++.++... ....++++...... .... ....+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---------------------------------~g~~l~ 69 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---------------------------------TGGSLT 69 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---------------------------------cCCccc
Confidence 688999999998776655 22345555433221 1110 123567
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEe-CCCCEE-EEEEecC--CCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCcc
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWR-ISDCKC-LESINAH--DDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKG 311 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwd-l~~~~~-~~~~~~h--~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~ 311 (347)
.-+|++++...+....+...+++. ..+++. ...+... ...|..+.++||| +++....++.|.|=-+.....+
T Consensus 70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred cccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 778999977776666666666664 333322 1122211 1279999999999 3334455688888776544332
Q ss_pred ceeee---hhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 312 TKHFL---AQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 312 ~~~~~---~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
....+ ..........+++++|.+++.+++.+...+
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 11111 122223356899999999998888776543
No 347
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0036 Score=51.51 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=82.5
Q ss_pred EEEecCCCcEEEEeCCCcceeeecCCCCeeEE-EEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEec
Q 043707 136 LYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAI-IITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSS 214 (347)
Q Consensus 136 l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l-~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (347)
|..-+.||.|+-++..+.....+.- ..+.+. ....-+..++.|+.+|.|.+|.............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~------------- 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE-RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC------------- 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh-hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhh-------------
Confidence 4445667888777754332111110 111122 1122345899999999999998863211100000
Q ss_pred cCCCeEEEEeecceeeeeecCCCeeEE-EEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-CcEE-EEEeCCCCEE
Q 043707 215 VNPKNYVEVRRNRNVLKIRHYDAVSCL-SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-DAIN-SVVAGFDSLV 291 (347)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-~~v~-~i~~~~~~~l 291 (347)
.-...|.++ .--.++.+..++++||.|+.|.+.-.+.+.....|. ..+. .+..+.+..+
T Consensus 99 ------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i 160 (238)
T KOG2444|consen 99 ------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFL 160 (238)
T ss_pred ------------------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceE
Confidence 011223332 222245688999999999999998888887777676 3333 3344445577
Q ss_pred EEE--eCCCcEEEEEccc
Q 043707 292 FTG--SADGTVKVWRREL 307 (347)
Q Consensus 292 ~s~--~~dg~I~vwd~~~ 307 (347)
+.+ +.|..++.|++..
T Consensus 161 ~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 161 KIADTSHDRVLKKWNVEK 178 (238)
T ss_pred Eeeccccchhhhhcchhh
Confidence 777 8888889998863
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.095 Score=44.25 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCEEEEecCCCcEEEEeCCCcceeeec-CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707 133 GDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
..+++.|+..+.+.--|.......++. -...|.+-+.- -|++++.|+..|.+++.+++++.+......
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~---------- 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI---------- 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee----------
Confidence 346666666666666554322222211 12344443333 355899999999999999999864433221
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeE-EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CC
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSC-LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF-DS 289 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~ 289 (347)
.+.|.+ -...+++.+++.|+.|++.+..|.++..++.+.+...+...+=+..+ ++
T Consensus 92 -----------------------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~ 148 (354)
T KOG4649|consen 92 -----------------------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG 148 (354)
T ss_pred -----------------------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence 122221 23467899999999999999999999999988775444333334444 34
Q ss_pred EEEEEeCCCcE
Q 043707 290 LVFTGSADGTV 300 (347)
Q Consensus 290 ~l~s~~~dg~I 300 (347)
-|+.+...|.|
T Consensus 149 sly~a~t~G~v 159 (354)
T KOG4649|consen 149 SLYAAITAGAV 159 (354)
T ss_pred eEEEEeccceE
Confidence 44444444443
No 349
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0067 Score=60.26 Aligned_cols=101 Identities=22% Similarity=0.410 Sum_probs=75.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707 173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS 252 (347)
Q Consensus 173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 252 (347)
+..++.|+..|.|...|+...-....... ....+|++++|+.+|..++.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-------------------------------~v~~~Vtsvafn~dg~~l~~ 147 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNE-------------------------------RVQGPVTSVAFNQDGSLLLA 147 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCC-------------------------------ccCCcceeeEecCCCceecc
Confidence 34788888889998888876411111100 25678999999999999999
Q ss_pred EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe---CCC-CEEEEEeCCCcEEEEEcc
Q 043707 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVA---GFD-SLVFTGSADGTVKVWRRE 306 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~---~~~-~~l~s~~~dg~I~vwd~~ 306 (347)
|-.+|.|.+||+..++.++.+..|..+.+.+.+ ..+ ..++++...|. +|.+-
T Consensus 148 G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 148 GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 999999999999999999998877766655543 233 37888888886 67664
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.72 E-value=0.0054 Score=37.52 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.4
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC 269 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~ 269 (347)
....|.+++|+|...+|+.+..||.|.++++ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5543
No 351
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0073 Score=54.35 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=100.8
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
-|...|+.+.... .+++.+++.||.++.|.-..-.- ...+. ....|...|
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG--vEfVK---------------------------hFraHL~~I 56 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG--VEFVK---------------------------HFRAHLGVI 56 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc--eeehh---------------------------hhHHHHHHH
Confidence 3677777766554 34999999999999996543110 00000 011377788
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEecC--CCcEEEEEeCCCC---EEEEEe-CCCcEEEEEcccCCcc
Q 043707 239 SCLSLNAEQGLLYSGSW-DKTLKVWRISDCKCLESINAH--DDAINSVVAGFDS---LVFTGS-ADGTVKVWRRELQGKG 311 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~~~~~~~h--~~~v~~i~~~~~~---~l~s~~-~dg~I~vwd~~~~~~~ 311 (347)
..++.+-++.++.+.+. |..++++|+.+...+..++.. .+.+..+ .++.. .|+++. .++.|.|+|-.....
T Consensus 57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~- 134 (558)
T KOG0882|consen 57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC- 134 (558)
T ss_pred HhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-
Confidence 88999999999999777 999999999877655444322 2222222 23332 555443 678999999874321
Q ss_pred ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.....-.-|..+|..+.+.|-+..+++....|
T Consensus 135 ---q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 135 ---QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred ---ccceecccccCceEEEEeeccccceeeccccc
Confidence 23334456889999999999988888766544
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.67 E-value=0.072 Score=51.05 Aligned_cols=113 Identities=9% Similarity=-0.033 Sum_probs=71.0
Q ss_pred eeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCEE------------EEEEecCCCcEEEEEeCCCC-EEEEE
Q 043707 229 VLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRISDCKC------------LESINAHDDAINSVVAGFDS-LVFTG 294 (347)
Q Consensus 229 ~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl~~~~~------------~~~~~~h~~~v~~i~~~~~~-~l~s~ 294 (347)
...+.-......+.++|||+++++++. +.++.|.|+.+.+. +.+.+.-.+ -...+|.++| ...+.
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytsl 392 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTL 392 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeE
Confidence 444556677888999999998887765 89999999987553 333333233 3456788887 45566
Q ss_pred eCCCcEEEEEcccC-----Cccceeeehhhhhcc-----CCcEEEEEEccCCCEEEEec
Q 043707 295 SADGTVKVWRRELQ-----GKGTKHFLAQVLLKQ-----ENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 295 ~~dg~I~vwd~~~~-----~~~~~~~~~~~~~~h-----~~~V~~l~~~p~~~~l~sgs 343 (347)
.-|.+|..|++... ++. ....+..+..| ......=.-.|+|++|++..
T Consensus 393 f~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 393 FLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eecceeEEEehHHHHHHhcccc-CCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 78999999999752 110 11123333333 22222223367888888754
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.66 E-value=0.015 Score=54.20 Aligned_cols=135 Identities=10% Similarity=0.101 Sum_probs=71.1
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
..-....+.++|+|+.++.++ ||...|+.....+. ...+.-.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~-------------------------------------k~~G~g~ 72 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN-------------------------------------KAFGSGL 72 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE-------------------------------------EEEEE-S
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc-------------------------------------cccCcee
Confidence 344578999999998888855 77777777322210 0223345
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehh
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQ 318 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~ 318 (347)
...|.+. +.+++-...++|.|+.--+.+....++.. ..+..|.. | +|+.. .++.|.+||..+.. .+.
T Consensus 73 ~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~-~~~~i~~yDw~~~~------~i~ 140 (443)
T PF04053_consen 73 SFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVK-SSDFICFYDWETGK------LIR 140 (443)
T ss_dssp EEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEE-ETTEEEEE-TTT--------EEE
T ss_pred EEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEE-CCCCEEEEEhhHcc------eee
Confidence 6788884 45666666888999732222222344422 23455543 5 44444 44489999998543 333
Q ss_pred hhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 319 VLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 319 ~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+. -.+|..|.|++++.+++..+.|.
T Consensus 141 ~i~--v~~vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 141 RID--VSAVKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp EES--S-E-EEEEE-TTSSEEEEE-S-S
T ss_pred EEe--cCCCcEEEEECCCCEEEEEeCCe
Confidence 332 22489999999999999988775
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.59 E-value=0.097 Score=50.80 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=76.3
Q ss_pred CCeeEEEEeCCCCEEEEEe------CCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecC
Q 043707 162 GLVKAIIITGDSNKIFTGH------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHY 235 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 235 (347)
..+...+++|+|+.++..- .|+.-.||-...+....... ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---------------------------------~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---------------------------------EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---------------------------------cC
Confidence 4678899999998877665 24444444333221111000 11
Q ss_pred CCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEE
Q 043707 236 DAVSCLSLNAEQGLLYSGSWD------------KTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKV 302 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~d------------g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~v 302 (347)
...+.-.|+|+|..|++.... +.+.+.+++.++... .....|..+.|+||| .++... +++|.+
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 236778899998777666432 233333444333222 235579999999999 444333 577777
Q ss_pred EEcccCCccc-eeeehhhhhc-cCCcEEEEEEccCCCEEE
Q 043707 303 WRRELQGKGT-KHFLAQVLLK-QENAITALAVNQESAVVY 340 (347)
Q Consensus 303 wd~~~~~~~~-~~~~~~~~~~-h~~~V~~l~~~p~~~~l~ 340 (347)
=-+.....+. .......+.. -...+.++.|..++.+++
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence 4333211111 1111111222 233468899999988553
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.57 E-value=0.41 Score=40.97 Aligned_cols=201 Identities=11% Similarity=0.130 Sum_probs=104.5
Q ss_pred eeeeccccEEEEeec---CCEEEEecCCCcEEEEeCC-CcceeeecC-CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707 118 SIVRKEGHIYSLAAS---GDLLYTGSDSKNIRVWKNL-KEFSGFKSN-SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 118 ~l~~h~~~V~~l~~~---~~~l~tg~~dg~I~vwd~~-~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~ 192 (347)
.+.+-...+..+.++ +.++++....+.|..++.. +.++.+.-. -+-..+|++..++.++++--.++.+.+.++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 344445568888875 3478888888888888865 333333322 25688999998887777666789999999855
Q ss_pred CCCceee-eecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---CE
Q 043707 193 KNPSVHK-RVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD---CK 268 (347)
Q Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~---~~ 268 (347)
....... ...... ......++..+-.|+|++.++.|+.+-...-..||.++. ..
T Consensus 96 ~~~~~~~~~~~~~~----------------------l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 96 DTTSLDRADVQKIS----------------------LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp --TT--EEEEEEEE-------------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred cccccchhhceEEe----------------------cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 4321111 000000 000012556688999999888777777766666776643 21
Q ss_pred EEEE--Ee------cCCCcEEEEEeCCCC--EEEEEeCCCcEEEEEcccCCccce-eeehhhhh---ccCCcEEEEEEcc
Q 043707 269 CLES--IN------AHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTK-HFLAQVLL---KQENAITALAVNQ 334 (347)
Q Consensus 269 ~~~~--~~------~h~~~v~~i~~~~~~--~l~s~~~dg~I~vwd~~~~~~~~~-~~~~~~~~---~h~~~V~~l~~~p 334 (347)
.+.. .. .....+..+.++|.. +++.+.....|..+|.. ++... ..+..... ..-.....|+|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~ 231 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP 231 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECC
Confidence 2111 11 123457888998874 67777788899888864 22111 11111111 1123578999999
Q ss_pred CCCEEEEe
Q 043707 335 ESAVVYCG 342 (347)
Q Consensus 335 ~~~~l~sg 342 (347)
+|++.++.
T Consensus 232 ~G~LYIvs 239 (248)
T PF06977_consen 232 DGNLYIVS 239 (248)
T ss_dssp T--EEEEE
T ss_pred CCCEEEEc
Confidence 99766554
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.53 E-value=0.24 Score=43.15 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=88.8
Q ss_pred EEeecCCEEEEecCCCcEEEEeCC-CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707 128 SLAASGDLLYTGSDSKNIRVWKNL-KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg~I~vwd~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~ 206 (347)
|....++.|+.|.++| +++++.. ........+...|..+...++-+.++.-+ |+.++++++..-...........+.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3445678999999998 8999872 11111222334499999999877777665 5999999998654332111000000
Q ss_pred ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE--EcCCCCEEEEEeCCCcEEEEeCCCC-----EEEEEEecCCCc
Q 043707 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS--LNAEQGLLYSGSWDKTLKVWRISDC-----KCLESINAHDDA 279 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~dg~i~vwdl~~~-----~~~~~~~~h~~~ 279 (347)
.. ...........+...+ -...+...+.....++|.+|..... +.++.+.. ...
T Consensus 80 ~~------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~ 140 (275)
T PF00780_consen 80 SR------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDP 140 (275)
T ss_pred cc------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCC
Confidence 00 0000111223333333 1123333333444568999887642 45566654 366
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707 280 INSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 280 v~~i~~~~~~~l~s~~~dg~I~vwd~~~~ 308 (347)
+..+.|. +..|+.|.. +...+.|+.+.
T Consensus 141 ~~~i~~~-~~~i~v~~~-~~f~~idl~~~ 167 (275)
T PF00780_consen 141 PSSIAFL-GNKICVGTS-KGFYLIDLNTG 167 (275)
T ss_pred cEEEEEe-CCEEEEEeC-CceEEEecCCC
Confidence 8888888 445555554 44778888743
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.52 E-value=0.14 Score=43.34 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707 173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS 252 (347)
Q Consensus 173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 252 (347)
..+++.|+..+.+.--|..+++.......+ ..+.+-+.- -|++++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL 68 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence 457788888888888888877643332221 112221111 2677999
Q ss_pred EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
|+..|.+++.+.++|..+..+..-+.--..-...+++ ++..|+.|+..+.-|.++.+
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 9999999999999998777776543322222345554 99999999999999987543
No 358
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.012 Score=48.47 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=41.8
Q ss_pred cCCEEEEecCCCcEEEEeCCCc---ceeeecCCCCeeEEEEe-CCCCEEEEEeCCCcEEEEecCCCC
Q 043707 132 SGDLLYTGSDSKNIRVWKNLKE---FSGFKSNSGLVKAIIIT-GDSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~~---~~~~~~h~~~V~~l~~s-p~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
-+.-|+.|+.+|.|++|..... ...+..-...|.++.-. .++.+.++++.||.||.|++.-.+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 4667899999999999986521 11222222334333322 245688999999999999987664
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.48 E-value=0.29 Score=43.88 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=88.0
Q ss_pred eccccEEEEeecCCEEEEecCCCcEEEEeCCCc--ceeeecC--CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc
Q 043707 121 RKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--FSGFKSN--SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS 196 (347)
Q Consensus 121 ~h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--~~~~~~h--~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~ 196 (347)
..++.|+++..-+++|+.+.. +.|++|++... +.....+ ...+.++.... ++|+.|.....|.++..+.....
T Consensus 86 ~~~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 86 EVKGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EESS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEEETTTE-
T ss_pred eecCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEEEccCCE
Confidence 457889999976666555553 68999984422 2222222 23566666654 49999998888888866542210
Q ss_pred eeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--
Q 043707 197 VHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------C-- 267 (347)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-------~-- 267 (347)
. ..+.. -.....++++.+-++++.++.+..+|.+.++.... +
T Consensus 163 l-~~va~----------------------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~ 213 (321)
T PF03178_consen 163 L-ILVAR----------------------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDP 213 (321)
T ss_dssp E-EEEEE----------------------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTT
T ss_pred E-EEEEe----------------------------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccc
Confidence 1 11100 01344577888876667999999999999998752 1
Q ss_pred E--EEEEEecCCCcEEEE---EeCCC--C-------EEEEEeCCCcEEEEE
Q 043707 268 K--CLESINAHDDAINSV---VAGFD--S-------LVFTGSADGTVKVWR 304 (347)
Q Consensus 268 ~--~~~~~~~h~~~v~~i---~~~~~--~-------~l~s~~~dg~I~vwd 304 (347)
+ .+..+.. ...|+++ .+.|. + .++.++.+|.|-+.-
T Consensus 214 ~L~~~~~f~l-g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 214 KLERISSFHL-GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp BEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred cceeEEEEEC-CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 2 3334432 3557777 44441 1 378888999988543
No 360
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.44 E-value=0.15 Score=42.44 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=77.2
Q ss_pred CcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEE-EEEeCCCcEEEEe--cCCCCCceeeeecccccccceEEeccCCCe
Q 043707 143 KNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKI-FTGHQDGKIRIWK--VSRKNPSVHKRVGSLPTFKDYVKSSVNPKN 219 (347)
Q Consensus 143 g~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~Dg~I~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
|.++.|-....+..+...-+--+.++|+.+.+.+ ++-+.+-+|.-|| ..++...... .
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~-------------------~ 199 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK-------------------V 199 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcc-------------------e
Confidence 4455555544444444444555678898765544 4556777887788 4444322111 1
Q ss_pred EEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707 220 YVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (347)
Q Consensus 220 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~ 288 (347)
++.++..+.. ++ -.--.++...+|.+.++.-..++|...|..+|+.+.+++.....|++++|.-.
T Consensus 200 i~dlrk~~~~---e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 200 IFDLRKSQPF---ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEEeccCCCc---CC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 1222221110 11 11123455667888888888899999999999999999999999999999654
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.43 E-value=0.059 Score=49.57 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=66.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-------------------------------------------EEEEE
Q 043707 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-------------------------------------------CLESI 273 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-------------------------------------------~~~~~ 273 (347)
.|+.++|.++...|++|...|.+.||.....+ +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999988889999999999988653211 22223
Q ss_pred ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhh-hh-ccCCcEEEEEEcc-----CC---CEEEEec
Q 043707 274 NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQV-LL-KQENAITALAVNQ-----ES---AVVYCGS 343 (347)
Q Consensus 274 ~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~-~~-~h~~~V~~l~~~p-----~~---~~l~sgs 343 (347)
+...++|++++.+.-|++|.|..+|.+.|.|+|...-......... +. .....|+++.|.- |+ -+|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 3456889999998779999999999999999984322111111110 11 2345688888873 22 3566666
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
..|
T Consensus 163 n~G 165 (395)
T PF08596_consen 163 NSG 165 (395)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.38 E-value=0.54 Score=40.25 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=82.6
Q ss_pred EEEEeec--CCEEEEecCCCcEEEEeCC---Cc-----ceee-----ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEec
Q 043707 126 IYSLAAS--GDLLYTGSDSKNIRVWKNL---KE-----FSGF-----KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKV 190 (347)
Q Consensus 126 V~~l~~~--~~~l~tg~~dg~I~vwd~~---~~-----~~~~-----~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~ 190 (347)
.-.+.+- +.++++--.++.+.+++.. +. ...+ ..+...+..|+|.+.++.|+.+-+....+++.+
T Consensus 67 ~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~ 146 (248)
T PF06977_consen 67 YEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV 146 (248)
T ss_dssp EEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred ceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence 3444442 3345544458888888742 11 1111 124456999999998888888887777778877
Q ss_pred CCCC---CceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCC
Q 043707 191 SRKN---PSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 191 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~vwdl~~ 266 (347)
.... ............ .......+..++++|. +++++....+..|.++| .+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~ 201 (248)
T PF06977_consen 147 NGFPGGFDLFVSDDQDLDD------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQ 201 (248)
T ss_dssp ESTT-SS--EEEE-HHHH-------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred ccccCccceeecccccccc------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence 6521 100000000000 0013455789999996 56677777788899999 67
Q ss_pred CEEEEEEecCC---------CcEEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 267 CKCLESINAHD---------DAINSVVAGFDSLVFTGSADGTVKVW 303 (347)
Q Consensus 267 ~~~~~~~~~h~---------~~v~~i~~~~~~~l~s~~~dg~I~vw 303 (347)
|+.+..+.-.. ...-.|++.++|.|+..++-+..++|
T Consensus 202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 88776664322 24678899999988877787766655
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.25 E-value=0.19 Score=43.85 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=79.2
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEE
Q 043707 171 GDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLL 250 (347)
Q Consensus 171 p~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 250 (347)
..++.|+.|..+| |.++++....... .+ .+...|..+...++-+.|
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i-------------------------------~~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RI-------------------------------LKLSSITQLSVLPELNLL 50 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce--eE-------------------------------eecceEEEEEEecccCEE
Confidence 3567899999999 8889882221111 10 133448899999987777
Q ss_pred EEEeCCCcEEEEeCCCCEEEEEE--------------ecCCCcEEEEE--eCCCC-EEEEEeCCCcEEEEEcccCCccce
Q 043707 251 YSGSWDKTLKVWRISDCKCLESI--------------NAHDDAINSVV--AGFDS-LVFTGSADGTVKVWRRELQGKGTK 313 (347)
Q Consensus 251 ~s~s~dg~i~vwdl~~~~~~~~~--------------~~h~~~v~~i~--~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~ 313 (347)
++-+ |+.+.++++......... ......+...+ -...+ ..++.....+|.+|..........
T Consensus 51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 7766 599999999765443311 01122343333 11222 444444555999998874322110
Q ss_pred eeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 314 HFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 314 ~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
...+.+ .-...+.+++|. ++.|+.|..++
T Consensus 130 -~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 130 -KLLKEI-SLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred -ceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc
Confidence 122222 123678899998 56677765554
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.16 E-value=0.02 Score=34.99 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=28.2
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
...|.+++|+|....||.+..||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.13 E-value=0.24 Score=49.23 Aligned_cols=139 Identities=10% Similarity=0.113 Sum_probs=87.3
Q ss_pred cCCCcEEEEeCC--CcceeeecCCCC-eeEEEEeC-----CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceE
Q 043707 140 SDSKNIRVWKNL--KEFSGFKSNSGL-VKAIIITG-----DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 140 ~~dg~I~vwd~~--~~~~~~~~h~~~-V~~l~~sp-----~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
.....|+-.|+. +.+..+..|... |..++=.. .....+.|-.+..|..||.+-........ .
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~--------- 570 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q--------- 570 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c---------
Confidence 444566666654 446666666543 55443211 13356778888899999988542110000 0
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEE
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l 291 (347)
..........+|++-..+| +||+|+.+|.|++||--..+....|.+-..+|..|..+.||..
T Consensus 571 -----------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 571 -----------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred -----------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence 0001244567788776654 7899999999999994322333445666889999999999954
Q ss_pred EEEeCCCcEEEEEcc
Q 043707 292 FTGSADGTVKVWRRE 306 (347)
Q Consensus 292 ~s~~~dg~I~vwd~~ 306 (347)
+.|..+..|.+++..
T Consensus 633 ilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 633 ILATCKTYLLLIDTL 647 (794)
T ss_pred EEEeecceEEEEEEe
Confidence 455557788888864
No 366
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.12 Score=52.27 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=95.7
Q ss_pred eeecCC-CCeeEEEEeCCCCEEEEE--eCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee
Q 043707 156 GFKSNS-GLVKAIIITGDSNKIFTG--HQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI 232 (347)
Q Consensus 156 ~~~~h~-~~V~~l~~sp~~~~l~s~--~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (347)
.+..|. -+|..+...+|+...++. +.+-.|..+|++.-..........+.. .....
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~---------------------s~ts~ 152 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN---------------------SATSF 152 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc---------------------ccchh
Confidence 344443 356667777776554433 344478899997653222111000000 00001
Q ss_pred ecCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCEE-EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 233 RHYDAVSCLSLNAEQ-GLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 233 ~h~~~V~~l~~~~~~-~~l~s~s~dg~i~vwdl~~~~~-~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
.......++.|+|.- ...+....|+.|+|..+..... +.++. -....++++|+|.| .++.|-..|++.-|....+.
T Consensus 153 ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 153 EKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred ccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 133446788899863 3455666799999888764432 33333 34568999999998 89999999999999876443
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
+.....+... -...|.+|+|-....+|++=
T Consensus 232 k~~ip~Pp~~---e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 232 KSEIPEPPVE---ENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eecccCCCcC---CCcceeEEEEecceeEEEEe
Confidence 2111111111 14689999999887777653
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.94 Score=41.69 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=94.5
Q ss_pred eeEEEEeCCCCE-EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEE
Q 043707 164 VKAIIITGDSNK-IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLS 242 (347)
Q Consensus 164 V~~l~~sp~~~~-l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 242 (347)
-..+++++.+.. +++...++.|.+.|....+......++ .....++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG---------------------------------~~P~~~~ 122 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG---------------------------------LGPVGLA 122 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec---------------------------------cCCceEE
Confidence 456788887774 444455689999996665433333222 1456789
Q ss_pred EcCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEE-EEeCCCcEEEEEcccCCccceeeeh
Q 043707 243 LNAEQGLLYSGSW---DKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF-TGSADGTVKVWRRELQGKGTKHFLA 317 (347)
Q Consensus 243 ~~~~~~~l~s~s~---dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~-s~~~dg~I~vwd~~~~~~~~~~~~~ 317 (347)
+.++++.++.+.. ++++.+.|-.+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........ . ..
T Consensus 123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~ 199 (381)
T COG3391 123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SV 199 (381)
T ss_pred ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cc
Confidence 9999987777765 688999999999888886654445 788999998 344 44579999999976432100 0 00
Q ss_pred hhhhccCCcEEEEEEccCCCEEEEec
Q 043707 318 QVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 318 ~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.....-......+++.|++..++..-
T Consensus 200 ~~~~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred ccccccCCCCceEEECCCCCEEEEEe
Confidence 01122233456888999998766543
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.76 E-value=1.2 Score=39.74 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=83.4
Q ss_pred CcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEe----------CCCcEEEEecCCCCCceeeeecccccccceE
Q 043707 143 KNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGH----------QDGKIRIWKVSRKNPSVHKRVGSLPTFKDYV 211 (347)
Q Consensus 143 g~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
+.|+|+|..+. +.... ..+..-.+..+|+++.++++. ..-.|.+||..+-.......+..-+...
T Consensus 17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----
T ss_pred ceEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---
Confidence 36778874432 21111 123344567899999888754 2346889999887655444443211100
Q ss_pred EeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC
Q 043707 212 KSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS--WDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (347)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~ 289 (347)
.......++++.++++++... -.-.|.|-|+...+.+..+..... ..+.=..+.
T Consensus 93 ----------------------~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~~ 148 (342)
T PF06433_consen 93 ----------------------VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPSGNR 148 (342)
T ss_dssp ----------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEEETT
T ss_pred ----------------------ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEEecCCC
Confidence 111233467888998888754 356699999999999888874322 222212233
Q ss_pred EEEEEeCCCcEEEEEcccCCc
Q 043707 290 LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 290 ~l~s~~~dg~I~vwd~~~~~~ 310 (347)
-|.+-|.||.+.-..+...++
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSS
T ss_pred ceEEEecCCceEEEEECCCCC
Confidence 677888899998888876555
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.29 Score=45.51 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=59.8
Q ss_pred CCeeEEEEeCCCCEEEE-EeCCCc--EEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe
Q 043707 162 GLVKAIIITGDSNKIFT-GHQDGK--IRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV 238 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s-~~~Dg~--I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 238 (347)
+.-..-+|+|||++|+- ...||. |.+.|+..++... +. ...+.-
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt------------------------------~~~gi~ 284 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LT------------------------------NGFGIN 284 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cc------------------------------cCCccc
Confidence 34445689999987654 456666 4555666554211 11 011112
Q ss_pred eEEEEcCCCCEEEEEe-CCCc--EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEE-EeCCCc--EEEEEcc
Q 043707 239 SCLSLNAEQGLLYSGS-WDKT--LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFT-GSADGT--VKVWRRE 306 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s-~dg~--i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s-~~~dg~--I~vwd~~ 306 (347)
..=.|+|+|+.++-.+ ..|. |.++++..... ..+......-..-.|+||| +|+. ...+|. |.+.|+.
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 2457899998776655 4555 45555544433 3443333322356789998 4443 333555 4455544
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.60 E-value=1.5 Score=38.75 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=82.3
Q ss_pred ecCCCcEEEEeC-CCccee-eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccC
Q 043707 139 GSDSKNIRVWKN-LKEFSG-FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVN 216 (347)
Q Consensus 139 g~~dg~I~vwd~-~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
.+..|.|+.-.. .+..+. ...-.+.+..+.-+++|++++++..-..+.-||--...-..+.+
T Consensus 120 ~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r---------------- 183 (302)
T PF14870_consen 120 AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR---------------- 183 (302)
T ss_dssp EETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------
T ss_pred EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc----------------
Confidence 344455555432 222222 23334678889889999988888766666677654322111111
Q ss_pred CCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCEEEEE----EecCCCcEEEEEeCCCCEE
Q 043707 217 PKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLES----INAHDDAINSVVAGFDSLV 291 (347)
Q Consensus 217 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl-~~~~~~~~----~~~h~~~v~~i~~~~~~~l 291 (347)
.....|..|.|.|++.+.+.+ ..|.|++=+. ...+.... +....-.+..++|.+++.+
T Consensus 184 ----------------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 184 ----------------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp -----------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred ----------------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 145679999999998776655 7888888872 22222222 1112234788999988866
Q ss_pred EEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 292 FTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 292 ~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+++..|.+.+ -..+++ ..........-...+..|.|..+.+-++.| .||
T Consensus 247 wa~gg~G~l~~--S~DgGk--tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 247 WAVGGSGTLLV--STDGGK--TWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp EEEESTT-EEE--ESSTTS--S-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred EEEeCCccEEE--eCCCCc--cceECccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence 66666665532 223333 333333333335568899998765555554 344
No 371
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.43 E-value=0.34 Score=45.74 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=62.6
Q ss_pred ecCCCeeEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCEEEEEEecC-CC----cEEEEEeCCCC-EEEEEeCC
Q 043707 233 RHYDAVSCLSLNAE----QGLLYSGSWDKTLKVWRIS-----DCKCLESINAH-DD----AINSVVAGFDS-LVFTGSAD 297 (347)
Q Consensus 233 ~h~~~V~~l~~~~~----~~~l~s~s~dg~i~vwdl~-----~~~~~~~~~~h-~~----~v~~i~~~~~~-~l~s~~~d 297 (347)
+....|..++|.|- ..-|++......|.||.+. ..+.+..-..+ .. --..+.|+|.. .|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 46677899999984 3244555567889999985 22333222211 11 12346799987 55444444
Q ss_pred CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 298 GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 298 g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
..=.+++++.... .+..-....+-|.|.+|.+||+.|+.+
T Consensus 134 dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 134 DVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred ceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEE
Confidence 4434566654332 222222456789999999999877665
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.24 E-value=1.2 Score=39.51 Aligned_cols=126 Identities=11% Similarity=0.110 Sum_probs=75.5
Q ss_pred EEEEe-CCCcceeeecCCCCeeEEEEeCCCCEEEEEeC-CCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEE
Q 043707 145 IRVWK-NLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQ-DGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVE 222 (347)
Q Consensus 145 I~vwd-~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (347)
|+..+ .....+.+..+-..-+.|+|+||++.|+.+-. .+.|.-|++...........
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~--------------------- 203 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR--------------------- 203 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc---------------------
Confidence 44444 22333334444455678999999987777754 47787777763110000000
Q ss_pred EeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCEEEEEEecCCCcEEEEEeCC-CC--EEEEEeC
Q 043707 223 VRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDK-TLKVWRISDCKCLESINAHDDAINSVVAGF-DS--LVFTGSA 296 (347)
Q Consensus 223 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg-~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~-~~--~l~s~~~ 296 (347)
.........+..-.++...+|.+-+++-++| .|.+|+.. ++.+..++.....+++++|-- +. +++++..
T Consensus 204 ----~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 204 ----GFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ----eEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 0000001334555677888888776665554 89999987 999999988877788888854 32 4444443
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.11 E-value=0.74 Score=42.82 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=62.5
Q ss_pred eeEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC--EEEEEeCC----------Cc
Q 043707 238 VSCLSLNAEQGLLYSG-SWDK----TLKVWRISDCKCLESI-NAHDDAINSVVAGFDS--LVFTGSAD----------GT 299 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~-s~dg----~i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~--~l~s~~~d----------g~ 299 (347)
+..+.++|++++++.+ +..| +|+++|+++++.+... ... ....+.|.+++ ++++...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3457889999988765 3334 4999999999876543 321 12338999986 55554333 23
Q ss_pred EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
|+.|++.+... ...++............+..++++++|+..+..+
T Consensus 204 v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 204 VYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred EEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 67777754332 1112222222222367899999999988765544
No 374
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.99 E-value=1.9 Score=41.19 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=34.9
Q ss_pred CCCcEEEEeCCCCEEEEEEecCC--------CcE--EEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707 255 WDKTLKVWRISDCKCLESINAHD--------DAI--NSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 255 ~dg~i~vwdl~~~~~~~~~~~h~--------~~v--~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~ 310 (347)
.+|.+.-.|+.+++.+-+..... ... ..+.. .++.|++++.||.|+.+|.++++.
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCce
Confidence 35677777777777665554320 111 11222 245888899999999999987654
No 375
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.96 E-value=0.97 Score=43.92 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=65.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEe-cCCCcEEEEEeC--CCC-EEEEEeCCCcEEEEEccc---CCcc
Q 043707 239 SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESIN-AHDDAINSVVAG--FDS-LVFTGSADGTVKVWRREL---QGKG 311 (347)
Q Consensus 239 ~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~-~h~~~v~~i~~~--~~~-~l~s~~~dg~I~vwd~~~---~~~~ 311 (347)
.-+.-+.-++..++-+...++.|||.+.+.....-. ...+.|..+.|. |++ .+++.|..+.|.++.-.. ....
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334444444444444445679999999887543332 346789999885 455 777778888998885421 1111
Q ss_pred ceeeehhhh--hccC-CcEEEEEEccCCCEEEEecC
Q 043707 312 TKHFLAQVL--LKQE-NAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 312 ~~~~~~~~~--~~h~-~~V~~l~~~p~~~~l~sgs~ 344 (347)
....++..+ ..|. .+|.+..|.++|.+++.+|.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 222222222 2333 57999999999988877653
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.95 E-value=2.5 Score=37.43 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD--CKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~--~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~ 312 (347)
...+..+.-.+++.+++++.....+.-||--. .++.. +.-...|..|.|.|++.|......|.|++=+......
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~-- 219 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE-- 219 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE--
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc--
Confidence 35677888899999998887666666787543 23322 2345789999999998665566999998887221111
Q ss_pred eeee-hhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 313 KHFL-AQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 313 ~~~~-~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.... ...+....-.+.+++|.++....++|+..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 1111 11122234458999999998888877753
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=3 Score=38.40 Aligned_cols=172 Identities=13% Similarity=0.194 Sum_probs=103.4
Q ss_pred ecCC-EEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeC---CCcEEEEecCCCCCceeeeecccc
Q 043707 131 ASGD-LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQ---DGKIRIWKVSRKNPSVHKRVGSLP 205 (347)
Q Consensus 131 ~~~~-~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~---Dg~I~vwd~~~~~~~~~~~~~~~~ 205 (347)
..+. .+++...+..|.+.|.... ......-......+++++++..+..+.. ++++.+.|-.+.+.......+
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG--- 159 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG--- 159 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---
Confidence 3444 4555555688999884322 1111112226778999999887777765 577777777766543332221
Q ss_pred cccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCEEEE-E----EecCCCc
Q 043707 206 TFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS-WDKTLKVWRISDCKCLE-S----INAHDDA 279 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~vwdl~~~~~~~-~----~~~h~~~ 279 (347)
..+ ..+++.|++..++... .+++|.+.|........ . ... ...
T Consensus 160 -----------------------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~ 208 (381)
T COG3391 160 -----------------------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTG 208 (381)
T ss_pred -----------------------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCC
Confidence 122 7799999999766665 68899999977665553 1 221 223
Q ss_pred EEEEEeCCCC-EEEEEe-C--CCcEEEEEcccCCccceeeehh-hhhccCCcEEEEEEccCCCEEEEe
Q 043707 280 INSVVAGFDS-LVFTGS-A--DGTVKVWRRELQGKGTKHFLAQ-VLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 280 v~~i~~~~~~-~l~s~~-~--dg~I~vwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
...+.+.+++ ++.... . ++.+...|...... ... ...+.. ....+.++|+|..+++.
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-----~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-----TATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-----EEeccccccC-CCCceeECCCCCEEEEE
Confidence 4567888888 333332 2 25888888874432 111 111112 45678888888887776
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.94 E-value=2.5 Score=37.52 Aligned_cols=141 Identities=8% Similarity=0.098 Sum_probs=74.1
Q ss_pred EEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc-eeeeecccccccceEE
Q 043707 135 LLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS-VHKRVGSLPTFKDYVK 212 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~-~~~~~~~~~~~~~~~~ 212 (347)
++.+--..+.|.-|+.... ...+. +.+.+.++.....+..|+++.. -+++++.+.+... ....... .
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~--~------ 107 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED--G------ 107 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC--C------
Confidence 4555555667777776533 33333 3334455544444446665543 3556676544321 1111000 0
Q ss_pred eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCC-CCEEEEEEecCCCcEEE
Q 043707 213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW---------DKTLKVWRIS-DCKCLESINAHDDAINS 282 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~vwdl~-~~~~~~~~~~h~~~v~~ 282 (347)
.-....+.+...|+|.+.++... -..-.||.+. .+..++.+..+-..-+.
T Consensus 108 --------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NG 167 (307)
T COG3386 108 --------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNG 167 (307)
T ss_pred --------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCc
Confidence 01123345566677665554332 0111355544 56666666665566788
Q ss_pred EEeCCCC-EEE-EEeCCCcEEEEEcc
Q 043707 283 VVAGFDS-LVF-TGSADGTVKVWRRE 306 (347)
Q Consensus 283 i~~~~~~-~l~-s~~~dg~I~vwd~~ 306 (347)
|+|+||+ .|+ +=+..+.|.-|++.
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecC
Confidence 9999998 444 44556888888876
No 379
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.91 E-value=0.9 Score=44.11 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=52.1
Q ss_pred cCCCeeEEEEc--CCCCEEEEEeCCCcEEEEeCC---------CCEEEEEE--ecCC-CcEEEEEeCCCCEEEEEeCCCc
Q 043707 234 HYDAVSCLSLN--AEQGLLYSGSWDKTLKVWRIS---------DCKCLESI--NAHD-DAINSVVAGFDSLVFTGSADGT 299 (347)
Q Consensus 234 h~~~V~~l~~~--~~~~~l~s~s~dg~i~vwdl~---------~~~~~~~~--~~h~-~~v~~i~~~~~~~l~s~~~dg~ 299 (347)
..+.|..+.|. |+++.+++-+..+.|.+|--. ...++..+ ..|. .+|.+..|.++|.+++|+ +++
T Consensus 71 ~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNq 149 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQ 149 (631)
T ss_pred CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCE
Confidence 56788889886 478888888888899988531 12234433 2333 578899999999777765 568
Q ss_pred EEEEEcccC
Q 043707 300 VKVWRRELQ 308 (347)
Q Consensus 300 I~vwd~~~~ 308 (347)
+.|+|-...
T Consensus 150 lfv~dk~~~ 158 (631)
T PF12234_consen 150 LFVFDKWLD 158 (631)
T ss_pred EEEECCCcC
Confidence 888877543
No 380
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.90 E-value=1.1 Score=43.32 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=71.6
Q ss_pred cCCEEEEecCCCcEEEEeCCC------cceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCCCCceeeeeccc
Q 043707 132 SGDLLYTGSDSKNIRVWKNLK------EFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~------~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
+|++...+ +++|.+.|..+ .+..+-.-......+.++|||+++++++ .+.+|.|.|+.+.+......+.
T Consensus 287 dGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-- 362 (635)
T PRK02888 287 AGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-- 362 (635)
T ss_pred CCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC--
Confidence 46655553 56899999665 2333333456788999999999877665 5899999999876532211110
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~ 266 (347)
..+.+ .....-...-...+|.++|+.+.+-.-|..|..|++.+
T Consensus 363 --~~~~v-----------------vaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 --PRDAV-----------------VAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --ccceE-----------------EEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 00000 00001122334578899988888888899999999875
No 381
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.78 E-value=0.0034 Score=57.20 Aligned_cols=142 Identities=11% Similarity=0.166 Sum_probs=99.6
Q ss_pred eecCCEEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEE-EEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707 130 AASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIF-TGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK 208 (347)
Q Consensus 130 ~~~~~~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 208 (347)
.+.+.-++.++.+..+..||.......-..-.+...+++|..++..++ .+...+.+.+||+.+........-+
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg------ 116 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG------ 116 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC------
Confidence 345555777788888889986554433333456677889988777644 4567789999999876422111111
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCC
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~ 288 (347)
.|.... +.|++....++.+-..|.+.|+...+.+.+-..-.|...+.++++.++
T Consensus 117 ------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 117 ------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred ------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 122222 678888888888888999999998877766666558889999999999
Q ss_pred CEEEEEeCCCcEEEE
Q 043707 289 SLVFTGSADGTVKVW 303 (347)
Q Consensus 289 ~~l~s~~~dg~I~vw 303 (347)
++.+.++.|..+.+-
T Consensus 171 d~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 171 DYVILCDCDNTLSVT 185 (615)
T ss_pred ceeeecCcHHHHHHh
Confidence 988888777655433
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.72 E-value=1.4 Score=40.41 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CEEE-EEEec----CCCcEEEEEeCCCCEEE
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD-------CKCL-ESINA----HDDAINSVVAGFDSLVF 292 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~-------~~~~-~~~~~----h~~~v~~i~~~~~~~l~ 292 (347)
.....|++.+++ |++++....+++.|... .+.+ ..+.. +......+.|.|||.|+
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LY 138 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLY 138 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEE
Confidence 345778888887 44445444333434421 1122 22322 23457789999998443
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.58 E-value=1.8 Score=40.20 Aligned_cols=112 Identities=11% Similarity=0.149 Sum_probs=64.0
Q ss_pred CeeEEEEeCCCCEEEEE-eCCC----cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707 163 LVKAIIITGDSNKIFTG-HQDG----KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~-~~Dg----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 237 (347)
.+..+.++|++++++-+ +..| .|++.|+.+++....... . ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------------------~-~~ 171 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------------------N-PK 171 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------------------E-EE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------------------c-cc
Confidence 34467889999987755 3444 499999998853221110 0 11
Q ss_pred eeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCEE--EEEEecCCCc--EEEEEeCCCC-E-EEEEeCC---
Q 043707 238 VSCLSLNAEQGLLYSGSWDK-----------TLKVWRISDCKC--LESINAHDDA--INSVVAGFDS-L-VFTGSAD--- 297 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~s~dg-----------~i~vwdl~~~~~--~~~~~~h~~~--v~~i~~~~~~-~-l~s~~~d--- 297 (347)
...+.|.+++..|+....+. .|+.|++.+... ...+...... ...+..++|+ + ++.....
T Consensus 172 ~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 172 FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSE 251 (414)
T ss_dssp SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSE
T ss_pred cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccC
Confidence 12389999977766554433 277888766532 2334433332 5677888887 3 3333333
Q ss_pred CcEEEEEccc
Q 043707 298 GTVKVWRREL 307 (347)
Q Consensus 298 g~I~vwd~~~ 307 (347)
..|.+.++..
T Consensus 252 s~v~~~d~~~ 261 (414)
T PF02897_consen 252 SEVYLLDLDD 261 (414)
T ss_dssp EEEEEEECCC
T ss_pred CeEEEEeccc
Confidence 3567777764
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=1.2 Score=41.63 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=86.9
Q ss_pred EEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCC-------EEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707 136 LYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSN-------KIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 136 l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~-------~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~ 206 (347)
|.++..-..++-.|+. +.+..+.-+.. |.-+.+.|+.. .-+.|-.|..|.-||.+-.......... .
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q-~-- 424 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ-S-- 424 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-c--
Confidence 3444444445555543 33555555554 66677777542 2345666788888988743221000000 0
Q ss_pred ccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC
Q 043707 207 FKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~ 286 (347)
..........|.+--.+ .++++|+.+|.|++||--..+....|.+-..+|..|..+
T Consensus 425 -----------------------kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 425 -----------------------KQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred -----------------------cccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence 00012234455554444 589999999999999963323344567788899999999
Q ss_pred CCCEEEEEeCCCcEEEEEccc
Q 043707 287 FDSLVFTGSADGTVKVWRREL 307 (347)
Q Consensus 287 ~~~~l~s~~~dg~I~vwd~~~ 307 (347)
.+|..+.|..+..+.+-++..
T Consensus 481 adGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccCcEEEEecccEEEEEEEec
Confidence 999666666788888888764
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.29 E-value=0.014 Score=57.05 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=42.8
Q ss_pred CCEEEEecCCCcEEEEeCCCc-ceeeecCCCCeeEEE-----------EeCCCCEEEEEeCCCcEEEEecC
Q 043707 133 GDLLYTGSDSKNIRVWKNLKE-FSGFKSNSGLVKAII-----------ITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~~-~~~~~~h~~~V~~l~-----------~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
.-++..+..+++|++....+. ...+.+|...+..++ .+|||+.|+.++.||.++.|.+-
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 447777888889988775433 345566877666554 47888888888889888888763
No 386
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=2.8 Score=36.37 Aligned_cols=152 Identities=7% Similarity=0.103 Sum_probs=89.8
Q ss_pred ecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCC
Q 043707 158 KSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDA 237 (347)
Q Consensus 158 ~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 237 (347)
.+-...|.++.|+|+.+.|++......-.||=-..++......... -..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------------------------~~D 130 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------------------------FSD 130 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------------------------cCC
Confidence 4444559999999999998888877777777665665444333321 122
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE----------EEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcc
Q 043707 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE----------SINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~----------~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~ 306 (347)
.-.+.+..++.+.++--.++++.++.+.....+. .........-.++|.|.. .|+.+-+-+-+.||...
T Consensus 131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 3345666666666666667777777665432111 111114557789999875 77778788888888776
Q ss_pred cCCccceeeehhhhhcc-------CCcEEEEEEccCCC-EEEEec
Q 043707 307 LQGKGTKHFLAQVLLKQ-------ENAITALAVNQESA-VVYCGS 343 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h-------~~~V~~l~~~p~~~-~l~sgs 343 (347)
..... ........+ -..|.++.|++... +|+-+-
T Consensus 211 ~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ 252 (316)
T COG3204 211 QSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD 252 (316)
T ss_pred cCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEec
Confidence 33211 011111111 23577788887544 444333
No 387
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.05 E-value=1.5 Score=43.04 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=96.1
Q ss_pred ccccEEEEeecCCEEEEecCCCcEEEEeCCCcce--------eee----------------cCCCCeeEEEEeC--CCCE
Q 043707 122 KEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS--------GFK----------------SNSGLVKAIIITG--DSNK 175 (347)
Q Consensus 122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~--------~~~----------------~h~~~V~~l~~sp--~~~~ 175 (347)
-++-.+++.- .++|+++. .+.|+||+...... .+. .....|+-|...- +...
T Consensus 39 fKNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EV 116 (717)
T PF08728_consen 39 FKNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEV 116 (717)
T ss_pred cccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeE
Confidence 3344555555 67777766 56899997321111 000 0112355555433 4568
Q ss_pred EEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc--CCCCEEEEE
Q 043707 176 IFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN--AEQGLLYSG 253 (347)
Q Consensus 176 l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~ 253 (347)
|+.|..||.|.+|.++.--............ ......-...........++.++++ ...++||++
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~-------------~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVS 183 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDS-------------GFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVS 183 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhcccccc-------------ccccccCCCCeEeecCCceeEEEEEecCcceEEEEe
Confidence 9999999999999874321000000000000 0000000111222355678999998 788899999
Q ss_pred eCCCcEEEEeCCCC--EE-EEEEecCCCcEEEEEeCCC-----C--EEEEEeCCCcEEEEEcc
Q 043707 254 SWDKTLKVWRISDC--KC-LESINAHDDAINSVVAGFD-----S--LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 254 s~dg~i~vwdl~~~--~~-~~~~~~h~~~v~~i~~~~~-----~--~l~s~~~dg~I~vwd~~ 306 (347)
+....|.||-.... +. ...-..|..-|.+|.|-++ | .|++++-.|.+.+|++.
T Consensus 184 sNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 184 SNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 98888888865432 11 1111125566888888654 2 67788899999999883
No 388
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.98 E-value=0.41 Score=40.26 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=48.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-------e-------cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESI-------N-------AHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (347)
Q Consensus 243 ~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-------~-------~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~ 307 (347)
+...+++|++-+.+|.+++||+.+++++..- . .....|..+....+|..+..-.+|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 4456788999999999999999998765332 1 244668888888888544555678889998863
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.34 Score=49.07 Aligned_cols=107 Identities=8% Similarity=-0.049 Sum_probs=67.6
Q ss_pred CCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCEEE-----EEEecC------CCcEEEEEeCCCC--EEEEEeCCCc
Q 043707 235 YDAVSCLSLNAEQGLLYSG--SWDKTLKVWRISDCKCL-----ESINAH------DDAINSVVAGFDS--LVFTGSADGT 299 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~--s~dg~i~vwdl~~~~~~-----~~~~~h------~~~v~~i~~~~~~--~l~s~~~dg~ 299 (347)
.-.+..+...+|+...++. +.+-.|..||+++...- .-|+.| .....++.|.|.- ..+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 3445556666665544443 33447889999754221 112222 2335577888864 7778889999
Q ss_pred EEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 300 VKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 300 I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
|+|..+..... .... ..-...+++++|+|.|+.++.|-..|+
T Consensus 180 l~V~~~~~~~~-----~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt 221 (1405)
T KOG3630|consen 180 LRVKSTKQLAQ-----NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGT 221 (1405)
T ss_pred hhhhhhhhhhh-----hhcc-cCcccceeeEEeccccceeeEecCCCe
Confidence 99998863322 1111 223557899999999999999987774
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.86 E-value=3.9 Score=35.22 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=51.0
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCC-----CcEEEEEeCCCCEEEE-EeCCCcEEEEEcccCC
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHD-----DAINSVVAGFDSLVFT-GSADGTVKVWRRELQG 309 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~-----~~v~~i~~~~~~~l~s-~~~dg~I~vwd~~~~~ 309 (347)
..=+.|+ .++..|+.......|+++|..+.+.+..+.... ..++-+.|. +|.|.+ .=....|...|..++.
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 3444555 345667766667789999998887776665332 235556665 443332 3334455555555433
Q ss_pred ccceee---ehhhhh------ccCCcEEEEEEccCCCEEEEec
Q 043707 310 KGTKHF---LAQVLL------KQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 310 ~~~~~~---~~~~~~------~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.....- +..... ....-.+.||++|+.+.|...|
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 210000 111110 1134679999999876655554
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.84 E-value=0.36 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 043707 236 DAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 236 ~~V~~l~~~~~~---~~l~s~s~dg~i~vwdl~~ 266 (347)
+.|+++.|+|+. .+|+-+-.-|.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888887789999999995
No 392
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.59 E-value=0.12 Score=50.98 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=87.5
Q ss_pred eeeccccEEEEeec-CC--EEEEecCCCcEEEEeCCC---c------ceeeecCCCCeeEEEEeC---CCCEEEEEeCCC
Q 043707 119 IVRKEGHIYSLAAS-GD--LLYTGSDSKNIRVWKNLK---E------FSGFKSNSGLVKAIIITG---DSNKIFTGHQDG 183 (347)
Q Consensus 119 l~~h~~~V~~l~~~-~~--~l~tg~~dg~I~vwd~~~---~------~~~~~~h~~~V~~l~~sp---~~~~l~s~~~Dg 183 (347)
+++..|.|-.+.+- .+ .++ ..-|...||++.. . ++....-...+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 34555666666652 11 111 3347788998431 1 122222233445555554 666777778889
Q ss_pred cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCe-----------eEEEEcCCCCEEEE
Q 043707 184 KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAV-----------SCLSLNAEQGLLYS 252 (347)
Q Consensus 184 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-----------~~l~~~~~~~~l~s 252 (347)
.|++...+........ .|...+ .--.++|||..++.
T Consensus 206 ~i~lL~~~ra~~~l~r---------------------------------sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~ 252 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFR---------------------------------SHSQRVTDMAFFAEGVLKLASLSPDGTVFAW 252 (1283)
T ss_pred ceeEeeechHHHHHHH---------------------------------hcCCCcccHHHHhhchhhheeeCCCCcEEEE
Confidence 9998877654321000 122221 11237999999999
Q ss_pred EeCCCcEEEEeC-----CCCEEEEEEecCC-CcEEEEEeCCC-------C---EEEEE-eCCCcEEEEEcc
Q 043707 253 GSWDKTLKVWRI-----SDCKCLESINAHD-DAINSVVAGFD-------S---LVFTG-SADGTVKVWRRE 306 (347)
Q Consensus 253 ~s~dg~i~vwdl-----~~~~~~~~~~~h~-~~v~~i~~~~~-------~---~l~s~-~~dg~I~vwd~~ 306 (347)
++.||.++.|.+ +.-+|+...+.|+ .+-.|..|+.. + +++++ ..+..+++|...
T Consensus 253 a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred eecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 999999888865 3345677777777 34334444432 1 34444 456788999765
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.49 E-value=0.85 Score=38.35 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=51.0
Q ss_pred cEEEEeecCCEEEEecCCCcEEEEeCCCcceee---------e-------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEE
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGF---------K-------SNSGLVKAIIITGDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~~~---------~-------~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vw 188 (347)
.+..+...+++|++-..+|.+++||+.+....+ . .....|..+.++.+|.-|++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 556688899999999999999999965432221 1 2456788899998887777665 5788999
Q ss_pred ecCCC
Q 043707 189 KVSRK 193 (347)
Q Consensus 189 d~~~~ 193 (347)
+.+-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 87654
No 394
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=4 Score=40.00 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=86.0
Q ss_pred ccceeEeeeeccccEEEEeecC-CEEEEecCCCcEEEEeCCCccee-----eecCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 112 CNGLIGSIVRKEGHIYSLAASG-DLLYTGSDSKNIRVWKNLKEFSG-----FKSNSGLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 112 ~~~~i~~l~~h~~~V~~l~~~~-~~l~tg~~dg~I~vwd~~~~~~~-----~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
.+.+++.+.-..+.+..+.|+. .-|+.-..+|+++||+....... +......|..+.+..+|-.+++. +|.+
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v 149 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQV 149 (829)
T ss_pred cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcE
Confidence 3444555555556888899874 47888899999999995533222 23344456666666666444433 3444
Q ss_pred E-EEecCCCCCceeeeecccccccceEEeccC---CCeEEEEe-----------ec--ceeeeeecCCCeeEEEEcCCCC
Q 043707 186 R-IWKVSRKNPSVHKRVGSLPTFKDYVKSSVN---PKNYVEVR-----------RN--RNVLKIRHYDAVSCLSLNAEQG 248 (347)
Q Consensus 186 ~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----------~~--~~~~~~~h~~~V~~l~~~~~~~ 248 (347)
. +-++..........++.............+ ...+..+. .. .......-...+..+..+|+.+
T Consensus 150 ~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~ 229 (829)
T KOG2280|consen 150 ILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRR 229 (829)
T ss_pred EEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcc
Confidence 3 333332221111111111111111111111 11111111 11 1111111235577889999999
Q ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 249 LLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 249 ~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
+|+--..+|.|.+-+....+++..+.
T Consensus 230 ~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 230 FLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEecCCcEEEEecchhhhhhccC
Confidence 99999999999999888777776665
No 395
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.35 E-value=5.7 Score=35.54 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=48.7
Q ss_pred eeEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC--EEEEE-eCCCcEEEEE
Q 043707 238 VSCLSLNAEQGLLYSGSW--------DK--TLKVWRISDCKCLESINAHDDAINSVVAGFDS--LVFTG-SADGTVKVWR 304 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~s~--------dg--~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~--~l~s~-~~dg~I~vwd 304 (347)
-.-+++++..+.|++--. |+ .|-++|+.+++.+..+.. ...+.+|..+.+. +|++. ..++.|.+||
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 345778876666665322 21 277889999999999874 3457788888775 66554 5689999999
Q ss_pred cccCC
Q 043707 305 RELQG 309 (347)
Q Consensus 305 ~~~~~ 309 (347)
..+++
T Consensus 319 ~~tGk 323 (342)
T PF06433_consen 319 AATGK 323 (342)
T ss_dssp TTT--
T ss_pred CcCCc
Confidence 98754
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.14 E-value=5.9 Score=38.59 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCEEEEEeCCCc------EEEEeCCCCE--EEEEEecCCCcEEEEEeCCCCEEEEEeCCC-----cEEEEEcccCCccc
Q 043707 246 EQGLLYSGSWDKT------LKVWRISDCK--CLESINAHDDAINSVVAGFDSLVFTGSADG-----TVKVWRRELQGKGT 312 (347)
Q Consensus 246 ~~~~l~s~s~dg~------i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg-----~I~vwd~~~~~~~~ 312 (347)
++.+.++|+.++. +..||..+.+ .+..+..-..... ++.-.+.+.+.||.|+ +|..||.++.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~---- 501 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETN---- 501 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCC----
Confidence 5677777775544 5677766543 2223322222222 3333344777787776 3677877643
Q ss_pred eeeehhhhhccCCcEEEEEEccCCCEEEEecCCCC
Q 043707 313 KHFLAQVLLKQENAITALAVNQESAVVYCGSSDGL 347 (347)
Q Consensus 313 ~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG~ 347 (347)
.+..+..+......+-.+.+ +++..+.|+.||.
T Consensus 502 ~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 22333323333333333333 4677788888773
No 397
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.04 E-value=0.47 Score=43.12 Aligned_cols=70 Identities=10% Similarity=-0.024 Sum_probs=40.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-ecC----------------CCcEEEEEeCCCC-EEEE-Ee
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAH----------------DDAINSVVAGFDS-LVFT-GS 295 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~-~~h----------------~~~v~~i~~~~~~-~l~s-~~ 295 (347)
...+....|+|+|+.++-.. ++.|.++++.+++..+-- .+- -+.-..+.|+||+ +|+. --
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35677899999999988886 678999998877443221 110 0122567799998 4443 33
Q ss_pred CCCcEEEEEc
Q 043707 296 ADGTVKVWRR 305 (347)
Q Consensus 296 ~dg~I~vwd~ 305 (347)
.+..|+.+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 4444444433
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.97 E-value=0.4 Score=28.50 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCeeEEEEeCCC---CEEEEEeCCCcEEEEecCCC
Q 043707 162 GLVKAIIITGDS---NKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 162 ~~V~~l~~sp~~---~~l~s~~~Dg~I~vwd~~~~ 193 (347)
++|.+++|+|+. ..|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999999844 47888888899999999853
No 399
>PHA02713 hypothetical protein; Provisional
Probab=92.97 E-value=6.6 Score=38.18 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=40.1
Q ss_pred cEEEEeCCCCE--EEEEEecCCCcEEEEEeCCCCEEEEEeCC------CcEEEEEcccCCccceeeehhhhhccCCcEEE
Q 043707 258 TLKVWRISDCK--CLESINAHDDAINSVVAGFDSLVFTGSAD------GTVKVWRRELQGKGTKHFLAQVLLKQENAITA 329 (347)
Q Consensus 258 ~i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~ 329 (347)
.+..||..+.+ .+..+....... +++...+.+.+.||.+ ..|..||.++.. .+.....+.........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSALHT 508 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCccccccee
Confidence 46778876543 222222111111 2222223355556654 246778877411 23333444333333333
Q ss_pred EEEccCCCEEEEecCCC
Q 043707 330 LAVNQESAVVYCGSSDG 346 (347)
Q Consensus 330 l~~~p~~~~l~sgs~DG 346 (347)
+++ +++..++||.||
T Consensus 509 ~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 509 ILH--DNTIMMLHCYES 523 (557)
T ss_pred EEE--CCEEEEEeeecc
Confidence 333 578888888776
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.97 E-value=7.8 Score=37.09 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=65.6
Q ss_pred ccEEEEeecCC------EEEEecCCCcEEEEeCC-------CcceeeecCC-----CCeeEEEEeCCCCEEEEEeCCCcE
Q 043707 124 GHIYSLAASGD------LLYTGSDSKNIRVWKNL-------KEFSGFKSNS-----GLVKAIIITGDSNKIFTGHQDGKI 185 (347)
Q Consensus 124 ~~V~~l~~~~~------~l~tg~~dg~I~vwd~~-------~~~~~~~~h~-----~~V~~l~~sp~~~~l~s~~~Dg~I 185 (347)
.+|+.+.|..- .|++.-..+.|.||.+. +.+.....+- ---..+.|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 46788887521 34444556789999732 1111111111 123467899987777766655444
Q ss_pred EEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 043707 186 RIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-DKTLKVWRI 264 (347)
Q Consensus 186 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~vwdl 264 (347)
.+.++.......... +...+.|.|.+|-.||+.|+++-. .=.-+|||-
T Consensus 137 V~~sV~~d~srVkaD-------------------------------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKAD-------------------------------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEe-------------------------------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 455655443222222 236788999999999988777643 334678985
Q ss_pred C
Q 043707 265 S 265 (347)
Q Consensus 265 ~ 265 (347)
.
T Consensus 186 ~ 186 (671)
T PF15390_consen 186 A 186 (671)
T ss_pred c
Confidence 4
No 401
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=4.7 Score=37.27 Aligned_cols=104 Identities=7% Similarity=0.054 Sum_probs=71.9
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEE----EEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCC
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL----ESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~----~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~ 309 (347)
..++|.++.|++|.+.|++--.|++|.+++....+.. .+-+.....|....|....-+|.-.. .-+.+|......
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-~G~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD-QGIEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec-CCeEEEEEchhh
Confidence 4568999999999999999999999999987432222 12233344577888876655554443 346777765443
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
+ .++....|...|+--.|.++.+.+.-++
T Consensus 144 r-----slRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 144 R-----SLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred h-----hhhhhhhcccCccEEEEccccceEeeec
Confidence 3 4555666788888899999887655443
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.96 E-value=2.8 Score=41.79 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=52.9
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC--CCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK--NPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
-.|..|.++|+|.+++-.|..|. .|-.+-.. .... .. ....-+ ....+.-........+...|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~-~~-----~g~~~i-------~Crt~~v~~~~~~~~~~~~i~ 150 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGE-FE-----DGKKEI-------NCRTVPVDERFFTSNSSLEIK 150 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCcccc-cc-----CCCcce-------eEEEEEechhhccCCCCceEE
Confidence 35888999999999998887654 44444221 0000 00 000000 000000011111113556789
Q ss_pred EEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 043707 240 CLSLNAE---QGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 240 ~l~~~~~---~~~l~s~s~dg~i~vwdl~~~ 267 (347)
.+.|+|. +..|+.-..|+++++||+...
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9999996 578888888999999999753
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=6 Score=34.33 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=95.4
Q ss_pred ecCC-EEEEecCCCcEEEEeCCCcceeeecCCCCeeEEEEeC-CCCEEEEEeCCCc-EEEEecCCCCCceeeeecccccc
Q 043707 131 ASGD-LLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIITG-DSNKIFTGHQDGK-IRIWKVSRKNPSVHKRVGSLPTF 207 (347)
Q Consensus 131 ~~~~-~l~tg~~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~Dg~-I~vwd~~~~~~~~~~~~~~~~~~ 207 (347)
.+|. ..++-+++|+|.-=- . -...-..|+++| ...-++.+-.-|+ ..++|....+.......
T Consensus 45 ~dgs~g~a~~~eaGk~v~~~----~-----lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s------ 109 (366)
T COG3490 45 RDGSFGAATLSEAGKIVFAT----A-----LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS------ 109 (366)
T ss_pred cCCceeEEEEccCCceeeee----e-----cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec------
Confidence 3555 455667777653211 0 111223456666 3334555555554 45788877764332211
Q ss_pred cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCC-EEEEEEecCCCcEE
Q 043707 208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSW-----DKTLKVWRISDC-KCLESINAHDDAIN 281 (347)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~vwdl~~~-~~~~~~~~h~~~v~ 281 (347)
.+...+.+|. .|++||.+|+..-. -|.|-|||.+.+ +.+..+..|.-...
T Consensus 110 ------------------~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH 165 (366)
T COG3490 110 ------------------QEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH 165 (366)
T ss_pred ------------------ccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc
Confidence 1112223443 58999999988644 367999999754 56777888887788
Q ss_pred EEEeCCCCEEEEEeCCC-------------------cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 282 SVVAGFDSLVFTGSADG-------------------TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 282 ~i~~~~~~~l~s~~~dg-------------------~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
.+.+.+||.+++....| .+.+.|..++...+++.+... .+.-.|..++..+||..++.|
T Consensus 166 ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~--l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 166 EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS--LRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh--hhhcceeeeeeCCCCcEEEEE
Confidence 88999998333222111 122333222221111111111 245578899999998877665
Q ss_pred cC
Q 043707 343 SS 344 (347)
Q Consensus 343 s~ 344 (347)
-.
T Consensus 244 Qy 245 (366)
T COG3490 244 QY 245 (366)
T ss_pred Ee
Confidence 43
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.60 E-value=3 Score=37.60 Aligned_cols=107 Identities=10% Similarity=0.083 Sum_probs=57.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEE---EEEEe----cCCCcEEEEEeCCC----CEEEEEeC-------CC
Q 043707 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC---LESIN----AHDDAINSVVAGFD----SLVFTGSA-------DG 298 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~---~~~~~----~h~~~v~~i~~~~~----~~l~s~~~-------dg 298 (347)
..+.|+|.|++.+|++ ...|.|++++ .++.. +..+. ........++++|+ ++|+.... +.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5599999999 44543 33331 23456789999995 44433322 12
Q ss_pred --cEEEEEcccCCc--cceeeehhhhhc---cCCcEEEEEEccCCCEEEEecCC
Q 043707 299 --TVKVWRRELQGK--GTKHFLAQVLLK---QENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 299 --~I~vwd~~~~~~--~~~~~~~~~~~~---h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.|.-|....... .....++..+.. ....-..|+|.|||.+.++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 344344432211 111222222222 23355679999999777666654
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=5.8 Score=34.55 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=74.0
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC-CCcEEEEEeCCCCE-EEEEeCCCcEEEEEcccCCcc
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH-DDAINSVVAGFDSL-VFTGSADGTVKVWRRELQGKG 311 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~~-l~s~~~dg~I~vwd~~~~~~~ 311 (347)
-...|..+.|+|+.+.|++......-.||=..+|+.+.++.-. -...-.|.+..++. +++--.++.+.++.+......
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3445999999999999999888888888877889998887521 12234567766664 444456888888887644220
Q ss_pred ----ceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 312 ----TKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 312 ----~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.....+............++|.|..+.|..+-
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence 11122233333366788999999887776553
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.10 E-value=6.1 Score=32.79 Aligned_cols=129 Identities=16% Similarity=0.317 Sum_probs=71.2
Q ss_pred EEeecC-CEEEEecCCCcEEEEeCCCc----ceeeecCCCCeeEEEEeCCCCEEEEEeCCC------cEEEE---ecCC-
Q 043707 128 SLAASG-DLLYTGSDSKNIRVWKNLKE----FSGFKSNSGLVKAIIITGDSNKIFTGHQDG------KIRIW---KVSR- 192 (347)
Q Consensus 128 ~l~~~~-~~l~tg~~dg~I~vwd~~~~----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg------~I~vw---d~~~- 192 (347)
++...| +.|+.+...+.|.+|++.+. ...|.. -+.|..++++..|++|+|--.+. .+|+| +...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344445 65555566678999996622 333433 37899999999999999875432 45654 3321
Q ss_pred CCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 193 KNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
.+.....++...+... ... -.....-..+.+.-...+.|++..|-..-|+.|+ ++++.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~-----~~~----~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTP-----SFN----ESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEccccccc-----CCC----CccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1111111111100000 000 0001112233344567888999999655566666 568999988643
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=92.06 E-value=8.9 Score=34.57 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=58.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC----CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH----DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h----~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~ 310 (347)
...++.+.+.+++..++++. .|.+++=....++.-.....+ ...+..+.+.+++.++.++.+|.|.. .. ..++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~-d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SK-DGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eC-CCCC
Confidence 45678889999888777654 576643233444433322221 23477888888876667777886653 22 2222
Q ss_pred cceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 311 GTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 311 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..........-......+.|..+++.+++|.
T Consensus 291 --tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 291 --TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred --CCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 1112111111224678888887777666554
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.82 E-value=2.7 Score=38.86 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=53.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE----EEEeCCC--------------C--EEEEE
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN----SVVAGFD--------------S--LVFTG 294 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~----~i~~~~~--------------~--~l~s~ 294 (347)
...+.+++.+|.+.+.++...-|+|.++|+.++..++.+++..++-. ...-... . +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 34578899999999998888889999999999988888776654321 1111111 1 33446
Q ss_pred eCCCcEEEEEcccCC
Q 043707 295 SADGTVKVWRRELQG 309 (347)
Q Consensus 295 ~~dg~I~vwd~~~~~ 309 (347)
-.-|.|.||.++.+.
T Consensus 387 prRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 387 PRRGILEVWSMRQGP 401 (415)
T ss_pred ccCCeEEEEecCCCC
Confidence 678999999998543
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.73 E-value=7.9 Score=33.32 Aligned_cols=145 Identities=12% Similarity=0.018 Sum_probs=78.4
Q ss_pred EEeecCCEEEEec---CCCcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEe-cCCCCCceeeeecc
Q 043707 128 SLAASGDLLYTGS---DSKNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWK-VSRKNPSVHKRVGS 203 (347)
Q Consensus 128 ~l~~~~~~l~tg~---~dg~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd-~~~~~~~~~~~~~~ 203 (347)
++..+++.++.-. ....++++.......... -...+..-.|.+++...+....+...+++. ...+... ...+..
T Consensus 30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~-~~~v~~ 107 (253)
T PF10647_consen 30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE-PVEVDW 107 (253)
T ss_pred EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-eEEecc
Confidence 4555565444333 334455555444333322 223677788999987666666677777774 2222211 111110
Q ss_pred cccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC------EEEE
Q 043707 204 LPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGS---WDKTLKVWRIS---DC------KCLE 271 (347)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~dg~i~vwdl~---~~------~~~~ 271 (347)
..-...|..+.++|||..++.-. .++.|.|=-+. .+ .++.
T Consensus 108 ----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 108 ----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred ----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 00112899999999998877665 35667666442 23 1122
Q ss_pred EEecCCCcEEEEEeCCCCEEE--EEeCCCcEEE
Q 043707 272 SINAHDDAINSVVAGFDSLVF--TGSADGTVKV 302 (347)
Q Consensus 272 ~~~~h~~~v~~i~~~~~~~l~--s~~~dg~I~v 302 (347)
........+..+.|.+++.|+ +...++.+..
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 222334678999999988333 3334443433
No 410
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.72 E-value=12 Score=35.26 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=24.0
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCC
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRK 193 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~ 193 (347)
..-+.|+|.|++++|++--..|.|++++-.++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 45778999999977666655699998876544
No 411
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.45 E-value=13 Score=35.41 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=38.2
Q ss_pred CCEEEEecCCCcEEEEeCCC--cceeeecCCC------Ce--eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707 133 GDLLYTGSDSKNIRVWKNLK--EFSGFKSNSG------LV--KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~~~--~~~~~~~h~~------~V--~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~ 199 (347)
+..++.++.++.|+-.|... .+..+..... .+ ..+... ++..++.++.+|.|+.+|.++++..-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 55666677778888887432 2222211111 11 011121 2258888889999999999998754443
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.85 E-value=1.5 Score=43.19 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=69.0
Q ss_pred cCCEEEEecCCCcEEEEeCCCc------c-------------ee-e-ecCCCCeeEEEEe--CCCCEEEEEeCCCcEEEE
Q 043707 132 SGDLLYTGSDSKNIRVWKNLKE------F-------------SG-F-KSNSGLVKAIIIT--GDSNKIFTGHQDGKIRIW 188 (347)
Q Consensus 132 ~~~~l~tg~~dg~I~vwd~~~~------~-------------~~-~-~~h~~~V~~l~~s--p~~~~l~s~~~Dg~I~vw 188 (347)
+.+.|+.|.+||.|.+|.+... . +. + ..-...+++++++ ...++||.++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 3558999999999999952100 0 00 1 1123478999998 778889999988888888
Q ss_pred ecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCC---C---EEEEEeCCCcEEEE
Q 043707 189 KVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQ---G---LLYSGSWDKTLKVW 262 (347)
Q Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~---~l~s~s~dg~i~vw 262 (347)
-............ ...|...|.+|+|-++. . .|++++-.|.+.+|
T Consensus 193 af~l~~~r~~~~~-----------------------------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 193 AFALVDERFYHVP-----------------------------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred EEecccccccccc-----------------------------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 6554211100000 01266789999997742 2 77788889999998
Q ss_pred eC
Q 043707 263 RI 264 (347)
Q Consensus 263 dl 264 (347)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 87
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.82 E-value=4.4 Score=37.97 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecC
Q 043707 279 AINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 279 ~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
...+..-...|++|+++..|-|++||.- +.+ ....+.+-...|..|....+|++|++.+.
T Consensus 564 ~Fss~~tTesGyIa~as~kGDirLyDRi-g~r-----AKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 564 KFSSGMTTESGYIAAASRKGDIRLYDRI-GKR-----AKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred cccccccccCceEEEecCCCceeeehhh-cch-----hhhcCcccccceeeeEeecCCcEEEEeec
Confidence 3445555556899999999999999975 222 33445566779999999999988877664
No 414
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.81 E-value=1.1 Score=43.43 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=28.8
Q ss_pred CeeEEEEcC----CCCEEEEEeCCCcEEEEeCCCCEEEEEEe
Q 043707 237 AVSCLSLNA----EQGLLYSGSWDKTLKVWRISDCKCLESIN 274 (347)
Q Consensus 237 ~V~~l~~~~----~~~~l~s~s~dg~i~vwdl~~~~~~~~~~ 274 (347)
.+..++++. +..+|++-+.|+++|+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 344555555 67899999999999999999999977653
No 415
>PHA03098 kelch-like protein; Provisional
Probab=90.80 E-value=15 Score=35.55 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=30.5
Q ss_pred EEeecCCEEEEecCCC------cEEEEeCCCc-ceee---ecCCCCeeEEEEeCCCCEEEEEeCCC-----cEEEEecCC
Q 043707 128 SLAASGDLLYTGSDSK------NIRVWKNLKE-FSGF---KSNSGLVKAIIITGDSNKIFTGHQDG-----KIRIWKVSR 192 (347)
Q Consensus 128 ~l~~~~~~l~tg~~dg------~I~vwd~~~~-~~~~---~~h~~~V~~l~~sp~~~~l~s~~~Dg-----~I~vwd~~~ 192 (347)
++..++.+++.|+.++ .+..||.... .... .........+. -++..++.||.++ .+..||..+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 3445666777776543 4666664322 1111 11111111222 2555777777652 355666654
Q ss_pred C
Q 043707 193 K 193 (347)
Q Consensus 193 ~ 193 (347)
.
T Consensus 368 ~ 368 (534)
T PHA03098 368 S 368 (534)
T ss_pred C
Confidence 4
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.51 E-value=4.4 Score=37.04 Aligned_cols=107 Identities=7% Similarity=0.086 Sum_probs=61.4
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--CE--EEEEEecCCCcEEEEEeCCCCEEEEEeCCCc
Q 043707 236 DAVSCLSLNAEQGLLYSGS-----------WDK-TLKVWRISD--CK--CLESINAHDDAINSVVAGFDSLVFTGSADGT 299 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s-----------~dg-~i~vwdl~~--~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~ 299 (347)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....|...-.....|++.+++ |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4456799999999877753 223 677776543 33 233443333456788888889 555555543
Q ss_pred EEEEEcccCCccc--eeeehhhhhc----cCCcEEEEEEccCCCEEEEec
Q 043707 300 VKVWRRELQGKGT--KHFLAQVLLK----QENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 300 I~vwd~~~~~~~~--~~~~~~~~~~----h~~~V~~l~~~p~~~~l~sgs 343 (347)
+++.|....++.. ...+...+.. +......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3444554222211 1222222322 234578999999998766554
No 417
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.33 E-value=5.5 Score=39.79 Aligned_cols=72 Identities=18% Similarity=0.058 Sum_probs=51.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CEE---EEEE--------ecCCCcEEEEEeCCCC----E
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISD----------CKC---LESI--------NAHDDAINSVVAGFDS----L 290 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~----------~~~---~~~~--------~~h~~~v~~i~~~~~~----~ 290 (347)
..|..|.++++|.+|+..+..| |.|-.+.. ++. .+++ ..+...|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999888755 55555521 111 1111 1234578899999964 8
Q ss_pred EEEEeCCCcEEEEEcccC
Q 043707 291 VFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 291 l~s~~~dg~I~vwd~~~~ 308 (347)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888999999999999743
No 418
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.12 E-value=8.3 Score=33.50 Aligned_cols=101 Identities=7% Similarity=0.050 Sum_probs=67.5
Q ss_pred eeEEEEcCC-CCEEEEEeCCCc-EEEEeCCCCEEEEEEecCCCc--EEEEEeCCCC-EEEEEeC-----CCcEEEEEccc
Q 043707 238 VSCLSLNAE-QGLLYSGSWDKT-LKVWRISDCKCLESINAHDDA--INSVVAGFDS-LVFTGSA-----DGTVKVWRREL 307 (347)
Q Consensus 238 V~~l~~~~~-~~~l~s~s~dg~-i~vwdl~~~~~~~~~~~h~~~--v~~i~~~~~~-~l~s~~~-----dg~I~vwd~~~ 307 (347)
-..|+++|. ..-++.+-.-|+ ..++|....+....+...++. .-.=.|++|| +|++.-. -|.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345778885 445555666666 568999888766665433321 1122589999 5554433 27899999973
Q ss_pred CCccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
. ...+..+..|.-....+.|.+||+.|+.+.
T Consensus 150 ~-----fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 G-----FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred c-----cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 2 235666777877888999999999888764
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.96 E-value=2.4 Score=34.17 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=25.2
Q ss_pred cEEEEEeCCCC-------EEEEEeCCCcEEEEEccc
Q 043707 279 AINSVVAGFDS-------LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 279 ~v~~i~~~~~~-------~l~s~~~dg~I~vwd~~~ 307 (347)
.+..++|+|.| +|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999965 899999999999998763
No 420
>PHA02713 hypothetical protein; Provisional
Probab=89.81 E-value=4.7 Score=39.22 Aligned_cols=61 Identities=2% Similarity=0.081 Sum_probs=35.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCC---CEEEEEEecCCCcEEEEEeCCCCEEEEEeCCC--cEEEEEccc
Q 043707 246 EQGLLYSGSWD------KTLKVWRISD---CKCLESINAHDDAINSVVAGFDSLVFTGSADG--TVKVWRREL 307 (347)
Q Consensus 246 ~~~~l~s~s~d------g~i~vwdl~~---~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg--~I~vwd~~~ 307 (347)
++.+.+.|+.+ ..+..||..+ ...+..+.........+.. .+.+.++||.|+ .+..||..+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCccc
Confidence 35666667654 2367888876 3444555443333333333 334777888888 777777764
No 421
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.68 E-value=17 Score=33.67 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=63.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE-----EEEEEecC--CCcEEEEEeCCCCEEEEEeCCCcEEEEEccc
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK-----CLESINAH--DDAINSVVAGFDSLVFTGSADGTVKVWRREL 307 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~-----~~~~~~~h--~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~ 307 (347)
...+..+.+.+++.+++++ .+|.+ +|....++ ........ ...+..+.+.+++.+++++.+|.+....-
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-- 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-- 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--
Confidence 4557888999888887766 45654 34444443 22322221 23488899998887888888887766532
Q ss_pred CCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 308 QGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 308 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.++ .......-..-......+.|.++++-+++| .+|
T Consensus 356 ~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 356 GGK--SWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred CCc--ceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 233 222222112234568899998776666555 344
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.22 E-value=8.2 Score=29.43 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=69.6
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcC-
Q 043707 167 IIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNA- 245 (347)
Q Consensus 167 l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~- 245 (347)
-+|......|+.+..-|+|.|.+.......... .......+.-...|++|+-.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------~~~~i~~LNin~~italaaG~l 58 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------QDSDISFLNINQEITALAAGRL 58 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------------ccCceeEEECCCceEEEEEEec
Confidence 355555567888888899999987654321111 011122233566788876544
Q ss_pred ----CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCC----CCEEEEEeCCCcEEEEEcc
Q 043707 246 ----EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF----DSLVFTGSADGTVKVWRRE 306 (347)
Q Consensus 246 ----~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~----~~~l~s~~~dg~I~vwd~~ 306 (347)
+...|+.|+ ...+..||+....-+.....+ +.|+++.+.. +.-++..+.+..|.-||.+
T Consensus 59 ~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 59 KPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred CCCCCcCEEEEec-cceEEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 356788887 457999999877665444433 5678887632 2245555566777777765
No 423
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.71 E-value=3.2 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCEEEEEEecC
Q 043707 245 AEQGLLYSGS-WDKTLKVWRISDCKCLESINAH 276 (347)
Q Consensus 245 ~~~~~l~s~s-~dg~i~vwdl~~~~~~~~~~~h 276 (347)
|+++.|+++. .+++|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4667666665 4789999999999888887753
No 424
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.38 E-value=14 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=21.1
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEEe
Q 043707 163 LVKAIIITGDSNKIFTGHQDGKIRIWK 189 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd 189 (347)
..+.|+|.|+++.|+ +-..|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe
Confidence 357899999986655 56699999999
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.16 E-value=26 Score=33.87 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=36.7
Q ss_pred CcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc
Q 043707 257 KTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 257 g~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~ 310 (347)
|.|.-+|+.+++.+-..+..............++++.+..||.++.+|.++++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCE
Confidence 568888999998776665322212222222345778888899999999998764
No 426
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.49 E-value=24 Score=32.78 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCEEEEEEecCCC--cEEEEEeCC--CC--EEEEEeCCCcEEEEEcccCCccc-e------------eee
Q 043707 256 DKTLKVWRISDCKCLESINAHDD--AINSVVAGF--DS--LVFTGSADGTVKVWRRELQGKGT-K------------HFL 316 (347)
Q Consensus 256 dg~i~vwdl~~~~~~~~~~~h~~--~v~~i~~~~--~~--~l~s~~~dg~I~vwd~~~~~~~~-~------------~~~ 316 (347)
..++.+||+.+.+.++++.--.. ....|.|.. +. -++.+.-..+|..|-....+.=. + ..+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 56799999999999999975433 344566643 33 23333344455555442222100 0 000
Q ss_pred ---hhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 317 ---AQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 317 ---~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
++.+.+-..-|++|..+.|.++|+.+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~ 330 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSN 330 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEc
Confidence 011111134589999999999998765
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.90 E-value=18 Score=30.61 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=57.5
Q ss_pred eeEEEEcCCCCEEE-EEeCCCcEEEEe--CCCCE-----EEEEEecC---CC-cEEEEEeCCCC-EEEEEeCCCcEEEEE
Q 043707 238 VSCLSLNAEQGLLY-SGSWDKTLKVWR--ISDCK-----CLESINAH---DD-AINSVVAGFDS-LVFTGSADGTVKVWR 304 (347)
Q Consensus 238 V~~l~~~~~~~~l~-s~s~dg~i~vwd--l~~~~-----~~~~~~~h---~~-~v~~i~~~~~~-~l~s~~~dg~I~vwd 304 (347)
-+.++|+.+.+.++ +-+.+-+|.-|| +.+|. .+..++.. +. ..-.++...+| +.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35688888766554 455677787788 55543 33333321 11 11122334455 555666788999999
Q ss_pred cccCCccceeeehhhhhccCCcEEEEEEccC-CCEEEE
Q 043707 305 RELQGKGTKHFLAQVLLKQENAITALAVNQE-SAVVYC 341 (347)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~l~s 341 (347)
..+++ ++..+.-....|+++||--. -..|++
T Consensus 240 p~tGK------~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 240 PTTGK------ILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCCc------EEEEEEcCCCceEEEEecCCCccEEEE
Confidence 87654 44555555778999999643 244443
No 428
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.48 E-value=4 Score=39.55 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=27.6
Q ss_pred CCeeEEEEeC----CCCEEEEEeCCCcEEEEecCCCCCceee
Q 043707 162 GLVKAIIITG----DSNKIFTGHQDGKIRIWKVSRKNPSVHK 199 (347)
Q Consensus 162 ~~V~~l~~sp----~~~~l~s~~~Dg~I~vwd~~~~~~~~~~ 199 (347)
..+..++++. +..++++.+.|+++|+||+.+++.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 6679999999999999999999874433
No 429
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.41 E-value=25 Score=31.87 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred EEEEc-CC-CCEEEEEeCCCcEE--EEeCCCCEEEEEEecCCCcEEE-EEeCCCC--EEEEEeCC--CcEEEEEcccC-C
Q 043707 240 CLSLN-AE-QGLLYSGSWDKTLK--VWRISDCKCLESINAHDDAINS-VVAGFDS--LVFTGSAD--GTVKVWRRELQ-G 309 (347)
Q Consensus 240 ~l~~~-~~-~~~l~s~s~dg~i~--vwdl~~~~~~~~~~~h~~~v~~-i~~~~~~--~l~s~~~d--g~I~vwd~~~~-~ 309 (347)
...+. ++ ..+|.....||.-+ +++...+. ...+....-.|.. +.+.+++ +++++..+ ..-.||.+... +
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 34443 54 44555555777644 45555554 4455545555655 4666665 45556553 35556655543 2
Q ss_pred ccceeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 310 KGTKHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 310 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
. . ...+......-..+.|+|++++++-..
T Consensus 318 ~--~---~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 G--E---PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp T--E---EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred C--C---eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 2 1 222222222227999999998876543
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.91 E-value=8.3 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 043707 236 DAVSCLSLNAEQ------GLLYSGSWDKTLKVWRISD 266 (347)
Q Consensus 236 ~~V~~l~~~~~~------~~l~s~s~dg~i~vwdl~~ 266 (347)
..|..++|+|.| -+|++...++.+.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999953 3688888899999998653
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.76 E-value=32 Score=32.44 Aligned_cols=110 Identities=8% Similarity=0.025 Sum_probs=62.1
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEe-----cCCCcEEEEEeCCCC-------EEEEEe----
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK--CLESIN-----AHDDAINSVVAGFDS-------LVFTGS---- 295 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~-----~h~~~v~~i~~~~~~-------~l~s~~---- 295 (347)
.-...+.|+|.|++++|++--..|+|++++..++. .+..+. ..+.....|+++|+- +|+..-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 45667889999999877776556999999865543 222221 135678899999873 344331
Q ss_pred ------CCCcEEEEEcccCCc--cceeeehhhh---hccCCcEEEEEEccCCCEEEEecCC
Q 043707 296 ------ADGTVKVWRRELQGK--GTKHFLAQVL---LKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 296 ------~dg~I~vwd~~~~~~--~~~~~~~~~~---~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
....|.-|.+..... .....++..+ ..|. -..|+|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 122343344431110 0011122222 1232 3478899999877766654
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.20 E-value=39 Score=33.01 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=45.5
Q ss_pred CCCEEEEEeCCCc-----EEEEeCCCCE--EEEEEecCCCcEEEEEeCCCC-EEEEEeCCC------cEEEEEcccCCcc
Q 043707 246 EQGLLYSGSWDKT-----LKVWRISDCK--CLESINAHDDAINSVVAGFDS-LVFTGSADG------TVKVWRRELQGKG 311 (347)
Q Consensus 246 ~~~~l~s~s~dg~-----i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg------~I~vwd~~~~~~~ 311 (347)
+|.+.++|+.||. +-.||.++.+ .+..+.......-.+.+ ++ +.++||.++ ++..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~--- 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN--- 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC---
Confidence 5678888888865 6667765443 22222211112222222 45 555666443 5677777643
Q ss_pred ceeeehhhhhccCCcEEEEEEccCCCEEEEecCCC
Q 043707 312 TKHFLAQVLLKQENAITALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 312 ~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~DG 346 (347)
.+.....+........ ++. -++...+.||.||
T Consensus 455 -~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 455 -TWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDG 486 (571)
T ss_pred -ceeecCCcccccccce-EEE-ECCEEEEECCccC
Confidence 2222222222222222 222 2567777788776
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.19 E-value=16 Score=34.52 Aligned_cols=91 Identities=10% Similarity=0.075 Sum_probs=49.8
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEee---cceeeeeecCCCee
Q 043707 163 LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRR---NRNVLKIRHYDAVS 239 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~ 239 (347)
.|..+..++.|..++-.+.+|.+.++=-+.-....... +++..+..+. ..+.......-.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~e---------------Dgk~~v~CRt~~i~~~~ftss~~ltl~ 169 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFE---------------DGKSTVNCRTTPVAERFFTSSTSLTLK 169 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceec---------------CCCceEEEEeecccceeeccCCceeee
Confidence 57788889999999999999976654211100000000 0000000000 00111111222356
Q ss_pred EEEEcCCC---CEEEEEeCCCcEEEEeCCCCE
Q 043707 240 CLSLNAEQ---GLLYSGSWDKTLKVWRISDCK 268 (347)
Q Consensus 240 ~l~~~~~~---~~l~s~s~dg~i~vwdl~~~~ 268 (347)
..+|+|+. ..|+.-+.|.+|++||+....
T Consensus 170 Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 170 QAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 78899964 567777789999999997544
No 434
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.50 E-value=22 Score=29.56 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=34.8
Q ss_pred CcEEEEEeCCC-CEEEEEeCCCcEEEEEcccCCc-cce----eeehhhhhccCC-cEEEEEEccCCCEEEEecC
Q 043707 278 DAINSVVAGFD-SLVFTGSADGTVKVWRRELQGK-GTK----HFLAQVLLKQEN-AITALAVNQESAVVYCGSS 344 (347)
Q Consensus 278 ~~v~~i~~~~~-~~l~s~~~dg~I~vwd~~~~~~-~~~----~~~~~~~~~h~~-~V~~l~~~p~~~~l~sgs~ 344 (347)
..+.+++..|- |.|+.|+ ++++.+|.+..... ..+ ......+.-|.+ .+..+++. +.++|..+.
T Consensus 135 ~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~ 205 (215)
T PF14761_consen 135 EPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSD 205 (215)
T ss_pred CCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEecC
Confidence 45678887775 5666665 56889998864322 000 011111122222 36677776 567776654
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.37 E-value=0.16 Score=46.75 Aligned_cols=135 Identities=11% Similarity=0.114 Sum_probs=86.4
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEE
Q 043707 164 VKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSL 243 (347)
Q Consensus 164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 243 (347)
-....|-+++.-++.++.+..|..||-........ .-......++|
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~----------------------------------n~tg~aldm~w 82 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL----------------------------------NPTGKALDMAW 82 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceeccc----------------------------------CCchhHhhhhh
Confidence 34567888777788888888888888654321100 12334455777
Q ss_pred cCCCCEEE-EEeCCCcEEEEeCCCCEE--EEEEecCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCccceeeehhh
Q 043707 244 NAEQGLLY-SGSWDKTLKVWRISDCKC--LESINAHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKHFLAQV 319 (347)
Q Consensus 244 ~~~~~~l~-s~s~dg~i~vwdl~~~~~--~~~~~~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~ 319 (347)
.-++..++ .+-..+.+.+||+.+... +..--.|.... +.|++.. .++.+-..|.+.|++-.+... ...
T Consensus 83 DkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~------iiv 154 (615)
T KOG2247|consen 83 DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR------IIV 154 (615)
T ss_pred ccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhh------hhh
Confidence 77665544 455578999999975321 11111222222 6788766 777788899999998874332 334
Q ss_pred hhccCCcEEEEEEccCCCEEE
Q 043707 320 LLKQENAITALAVNQESAVVY 340 (347)
Q Consensus 320 ~~~h~~~V~~l~~~p~~~~l~ 340 (347)
...|...+++++|.+++..+.
T Consensus 155 ~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred hcccccceeEEEecccceeee
Confidence 445888999999999865544
No 436
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.23 E-value=19 Score=33.67 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CcEEEEEeCCCC-EEEEEeCCCcEEEEEccc
Q 043707 278 DAINSVVAGFDS-LVFTGSADGTVKVWRREL 307 (347)
Q Consensus 278 ~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~ 307 (347)
..|.+++..+.. .+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 348888887654 999999999999999975
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.41 E-value=19 Score=33.46 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=30.6
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707 159 SNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 159 ~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
.....+.+|+.+|.+++.++...=|.|.++|+..+..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3445688999999998888887779999999988753
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=33 Score=32.05 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=71.5
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 160 NSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 160 h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
..++|.+|.|++|.+.|+.--.|.+|.+++....+........+- .....|.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck----------------------------~k~~~Il 116 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK----------------------------TKNANIL 116 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc----------------------------cCcceeE
Confidence 457999999999999999999999999998854432211110000 1234477
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcc
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISD-CKCLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~-~~~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~ 306 (347)
...|... .-++.-...| +-+|-+.. .+.++..+.|...|+--.|.++. +|+++-..+++.=+.++
T Consensus 117 GF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 117 GFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred EEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 7778765 3444444333 66665533 23455556677778777888876 33344345554444443
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=17 Score=34.47 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=48.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEe---------CCCCEEEEE---Ee--------cCCCcEEEEEeCCCC----EE
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWR---------ISDCKCLES---IN--------AHDDAINSVVAGFDS----LV 291 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwd---------l~~~~~~~~---~~--------~h~~~v~~i~~~~~~----~l 291 (347)
-.|..+..++.|..++..+.+|.+.++= ++++++.-. +. ...-.+..+.|+|+. .|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4577888899999988888888655443 123432211 10 111235677899975 77
Q ss_pred EEEeCCCcEEEEEccc
Q 043707 292 FTGSADGTVKVWRREL 307 (347)
Q Consensus 292 ~s~~~dg~I~vwd~~~ 307 (347)
..-..|..|++||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 8888999999999863
No 440
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=81.85 E-value=9.8 Score=37.91 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=83.3
Q ss_pred EEEEecCCCcEEEEeCC-Cc-----ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccccc
Q 043707 135 LLYTGSDSKNIRVWKNL-KE-----FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFK 208 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~-~~-----~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 208 (347)
.+..|+.++.|.++... .. ...+......+.++.+++. -+..|..||++-.+--..... .... |.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gS-wd~e----p~-- 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGS-WDGE----PN-- 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCC-CCCC----Cc--
Confidence 56778888888888633 11 1122233456777777665 566666777766542211100 0000 00
Q ss_pred ceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecC---CCcEEEEEe
Q 043707 209 DYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH---DDAINSVVA 285 (347)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h---~~~v~~i~~ 285 (347)
........+|..+++..| ++-++.+|.+.|+...+......+..| ...|+++..
T Consensus 620 --------------------~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~ 676 (925)
T KOG3522|consen 620 --------------------ISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLY 676 (925)
T ss_pred --------------------cccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEe
Confidence 000013456777777654 566777999999998876655555444 457899998
Q ss_pred CCCCEEEEEeCCCcEEEEEcccC
Q 043707 286 GFDSLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 286 ~~~~~l~s~~~dg~I~vwd~~~~ 308 (347)
...+..++-.....+++++.++.
T Consensus 677 ~~~gVwvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 677 LDNGVWVAFASGDEERLFHTETL 699 (925)
T ss_pred eCCceEEEEcCCCEEEEeccccc
Confidence 87785555555556777766543
No 441
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=81.25 E-value=70 Score=32.94 Aligned_cols=211 Identities=11% Similarity=0.079 Sum_probs=104.8
Q ss_pred cccEEEEeecCCEEEEecCCCcEEEEeCCCc--------ceeee--cCCCCeeEEEEeCC--CCEEEEEeCC---CcEEE
Q 043707 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKE--------FSGFK--SNSGLVKAIIITGD--SNKIFTGHQD---GKIRI 187 (347)
Q Consensus 123 ~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~--------~~~~~--~h~~~V~~l~~sp~--~~~l~s~~~D---g~I~v 187 (347)
.+.+..+++.++.+...-.+|.+++....+. ...|. -..--|.+++|.-+ ...+++...| ..++-
T Consensus 115 ~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~ 194 (1096)
T KOG1897|consen 115 NGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKT 194 (1096)
T ss_pred CceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEE
Confidence 3456667788888888888888887653321 11111 11224778887542 2345555444 45777
Q ss_pred EecCCCCCceeeeec--ccccccceEEeccCC-CeEEEE--------eecceeeee---ecCCC-eeEEEEcCCCCEEEE
Q 043707 188 WKVSRKNPSVHKRVG--SLPTFKDYVKSSVNP-KNYVEV--------RRNRNVLKI---RHYDA-VSCLSLNAEQGLLYS 252 (347)
Q Consensus 188 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~---~h~~~-V~~l~~~~~~~~l~s 252 (347)
++++-+.....+... ........+..-..+ ..++.. ......... ..... +..-..+.++..++.
T Consensus 195 yelnl~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl 274 (1096)
T KOG1897|consen 195 YELNLRDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLL 274 (1096)
T ss_pred EEeccchhhccccccccccccCCceeeecCCCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEEE
Confidence 776655322221110 011111111110011 111111 000000000 11111 111234557888899
Q ss_pred EeCCCcEEEEeCC-CCEEEEE--E----ecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccce-eeehhhhhccC
Q 043707 253 GSWDKTLKVWRIS-DCKCLES--I----NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTK-HFLAQVLLKQE 324 (347)
Q Consensus 253 ~s~dg~i~vwdl~-~~~~~~~--~----~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~-~~~~~~~~~h~ 324 (347)
+..+|.+...-+. +++.... + -+...-..|+..-++|.+++|+.-|.=.+-.+.+..+... ..+... ...-
T Consensus 275 ~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet-~~NL 353 (1096)
T KOG1897|consen 275 GDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILET-FVNL 353 (1096)
T ss_pred ecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhh-cccc
Confidence 9999998776655 4443322 1 1334455677777889999999888778887776544211 112222 2234
Q ss_pred CcEEEEEEcc
Q 043707 325 NAITALAVNQ 334 (347)
Q Consensus 325 ~~V~~l~~~p 334 (347)
++|.+++...
T Consensus 354 gPI~Dm~Vvd 363 (1096)
T KOG1897|consen 354 GPIVDMCVVD 363 (1096)
T ss_pred cceeeEEEEe
Confidence 5888877654
No 442
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.48 E-value=31 Score=32.11 Aligned_cols=65 Identities=8% Similarity=0.137 Sum_probs=30.4
Q ss_pred cEEEEEeCCCC-EE-EEEeCCCcEEEEEcccCCcccee--eeh-hh--------hh--ccCCcEEEEEEccCCCEEEEec
Q 043707 279 AINSVVAGFDS-LV-FTGSADGTVKVWRRELQGKGTKH--FLA-QV--------LL--KQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 279 ~v~~i~~~~~~-~l-~s~~~dg~I~vwd~~~~~~~~~~--~~~-~~--------~~--~h~~~V~~l~~~p~~~~l~sgs 343 (347)
-|+.|..+.|. +| +++-.+|.|+.||+....+.... ..+ .. .. .-.+...-|..+-||+.|+...
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46888888876 44 45567999999999754331000 000 00 00 1123456788889998888765
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.43 E-value=25 Score=33.99 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=61.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEE
Q 043707 173 SNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYS 252 (347)
Q Consensus 173 ~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 252 (347)
+..++.++.++.|.-.|..+++..-............. ......-..+++. +..++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~---------------------~~~~~~~rg~av~--~~~v~v 125 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV---------------------MCCDVVNRGVALY--DGKVFF 125 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc---------------------cccccccccceEE--CCEEEE
Confidence 34777777788888889888875443332110000000 0000000112222 346777
Q ss_pred EeCCCcEEEEeCCCCEEEEEEecCCCc-EEEEEeCC---CCEEEEEeC------CCcEEEEEcccCCc
Q 043707 253 GSWDKTLKVWRISDCKCLESINAHDDA-INSVVAGF---DSLVFTGSA------DGTVKVWRRELQGK 310 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~-v~~i~~~~---~~~l~s~~~------dg~I~vwd~~~~~~ 310 (347)
++.|+.+.-.|.++++.+-.+...... -..+.-.| ++.++.+.. +|.|.-+|.++++.
T Consensus 126 ~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 126 GTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred EcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 888999999999999988665421110 00111122 455555432 67888888876543
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.79 E-value=28 Score=36.69 Aligned_cols=143 Identities=17% Similarity=0.304 Sum_probs=81.8
Q ss_pred cCCCcEEEEeCC--CcceeeecCCCCeeEEEE--------eCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccc
Q 043707 140 SDSKNIRVWKNL--KEFSGFKSNSGLVKAIII--------TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKD 209 (347)
Q Consensus 140 ~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~--------sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 209 (347)
+.|..+.+|+.. .....+.+-...|..+.. -|.=++++.-+.--.|.++-+.-.+......+. ..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-----~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-----NT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----cc
Confidence 457889999854 445666665556666543 222234444444445666654332211100000 00
Q ss_pred eEEeccCCCeEEEEeecceeeeee-cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC----CC---E-E-----------
Q 043707 210 YVKSSVNPKNYVEVRRNRNVLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS----DC---K-C----------- 269 (347)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~----~~---~-~----------- 269 (347)
- ..+. ..-.|+|+....+|+.+++|- || .+|.+- ++ + |
T Consensus 171 ~-------------------~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 171 S-------------------FKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred c-------------------eeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHH
Confidence 0 1111 345688888777788777765 55 455541 11 1 1
Q ss_pred -----EEEEe-cCCCcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCC
Q 043707 270 -----LESIN-AHDDAINSVVAGFDS-LVFTGSADGTVKVWRRELQG 309 (347)
Q Consensus 270 -----~~~~~-~h~~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~ 309 (347)
+-.+. .+.++|..|...... .+.+-+..|+|.+||+...+
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 12233 567899999987653 88899999999999998643
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.34 E-value=58 Score=33.11 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEE-------------EEEeCC---CCEEEEEeC----------CCcE
Q 043707 247 QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN-------------SVVAGF---DSLVFTGSA----------DGTV 300 (347)
Q Consensus 247 ~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~-------------~i~~~~---~~~l~s~~~----------dg~I 300 (347)
+..++.++.|+.+.-.|.++|+.+..|.. .+.|. .+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788888999999999999998877642 11110 111112 456666643 6889
Q ss_pred EEEEcccCCc
Q 043707 301 KVWRRELQGK 310 (347)
Q Consensus 301 ~vwd~~~~~~ 310 (347)
+-+|+++++.
T Consensus 339 ~A~Da~TGkl 348 (764)
T TIGR03074 339 RAFDVNTGAL 348 (764)
T ss_pred EEEECCCCcE
Confidence 9999987654
No 446
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.65 E-value=50 Score=30.32 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=25.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEe
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~ 285 (347)
..++++.+.++-......++-.|+++.+....+...+..+-...|
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~ 130 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW 130 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccce
Confidence 455677777655545668888999988766666666665544444
No 447
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.44 E-value=67 Score=30.00 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=30.4
Q ss_pred EEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 290 LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 290 ~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
+|.+=+.||.+.+|+-+... ....+.. ---.--+++.+....+++++.+
T Consensus 147 ~IcVQS~DG~L~~feqe~~~------f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFA------FSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEecCceEEEEeCCcEE------EEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 88889999999999986321 1111111 1123456677777777776654
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.41 E-value=7.6 Score=21.01 Aligned_cols=25 Identities=32% Similarity=0.334 Sum_probs=20.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCEEEEE
Q 043707 248 GLLYSGSWDKTLKVWRISDCKCLES 272 (347)
Q Consensus 248 ~~l~s~s~dg~i~vwdl~~~~~~~~ 272 (347)
..++.++.+|.+..+|.++++.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 4678888899999999999887654
No 449
>PRK10115 protease 2; Provisional
Probab=76.30 E-value=89 Score=31.40 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=60.9
Q ss_pred CCeeEEEEeCCCCEEEEEeCC-----CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707 162 GLVKAIIITGDSNKIFTGHQD-----GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~D-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 236 (347)
-.+..+.|+|++++|+-+... ..|++-|+.++....... . ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~-------------------------------~~- 173 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-D-------------------------------NV- 173 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-c-------------------------------Cc-
Confidence 357778999999987765422 257788887664211110 0 11
Q ss_pred CeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCC--EEEEEEecCCCcEE-EEEeCCCC-E-EEEE--eCCCcEEEE
Q 043707 237 AVSCLSLNAEQGLLYSGSWD------KTLKVWRISDC--KCLESINAHDDAIN-SVVAGFDS-L-VFTG--SADGTVKVW 303 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~d------g~i~vwdl~~~--~~~~~~~~h~~~v~-~i~~~~~~-~-l~s~--~~dg~I~vw 303 (347)
-..++|.+|++.|+....+ ..|+.+++.++ +-...+........ .+..+.++ + ++.. ..++.+.++
T Consensus 174 -~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 174 -EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred -ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence 1358899887755544332 35777888777 32333333233333 22333344 3 3322 235678888
Q ss_pred Ecc
Q 043707 304 RRE 306 (347)
Q Consensus 304 d~~ 306 (347)
+..
T Consensus 253 ~~~ 255 (686)
T PRK10115 253 DAE 255 (686)
T ss_pred ECc
Confidence 864
No 450
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=75.24 E-value=8.9 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=14.1
Q ss_pred cEEEEeecCCEEEEecCCCcEEEE
Q 043707 125 HIYSLAASGDLLYTGSDSKNIRVW 148 (347)
Q Consensus 125 ~V~~l~~~~~~l~tg~~dg~I~vw 148 (347)
.|.+++...++++.+...+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 355566556666666655666655
No 451
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=1e+02 Score=32.40 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=23.0
Q ss_pred ccccEEEEeecCCEEEEecCCCcEEEEe
Q 043707 122 KEGHIYSLAASGDLLYTGSDSKNIRVWK 149 (347)
Q Consensus 122 h~~~V~~l~~~~~~l~tg~~dg~I~vwd 149 (347)
|.....++++.-.+++.|..+|.|+++-
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg 63 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYG 63 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEec
Confidence 4556777888888999999999999984
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=74.28 E-value=70 Score=32.63 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=74.5
Q ss_pred CCeeEEEEeC-CCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707 162 GLVKAIIITG-DSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC 240 (347)
Q Consensus 162 ~~V~~l~~sp-~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 240 (347)
.+..+++|+| +.+.||.....|.-.|||+................... .+ . ......+.-..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~g---------si--~------~d~~e~s~w~r 208 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISG---------SI--I------FDPEELSNWKR 208 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCc---------cc--c------CCCcccCccee
Confidence 3677899999 66799999999999999993222111100000000000 00 0 00011244557
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCEEEE-E-EecCCCcEEEEEeCCC--CEEEEEeCCCcEEEEEccc
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCKCLE-S-INAHDDAINSVVAGFD--SLVFTGSADGTVKVWRREL 307 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~-~-~~~h~~~v~~i~~~~~--~~l~s~~~dg~I~vwd~~~ 307 (347)
+.|..+.+.|+.++. ..+.++|+++..... - .......|..+.-+++ ++++.-. -..|...++..
T Consensus 209 I~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 209 ILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred eEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 889888888888875 568999998775533 1 1224467888888877 3333322 25666666664
No 453
>PRK13613 lipoprotein LpqB; Provisional
Probab=73.77 E-value=96 Score=30.56 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=37.8
Q ss_pred cEEEEEeCCCC-EEE--E-EeCCCcEEEEEcccCCccc-eeeehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 279 AINSVVAGFDS-LVF--T-GSADGTVKVWRRELQGKGT-KHFLAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 279 ~v~~i~~~~~~-~l~--s-~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.|..+..++|| .++ . ....++|.|=-+.....+. .......+..-...+.+++|..++.+++.+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEec
Confidence 79999999999 222 2 2334667666655433321 1111122222233599999999988877553
No 454
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.71 E-value=49 Score=30.16 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCC-cEEEEEeCCCCEEEEEeCCCcEEEEEcccC
Q 043707 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDD-AINSVVAGFDSLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 246 ~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~-~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~ 308 (347)
+|+ ++.++.++.++.+|.++++.+-.+..... .+..-....++.++.++.++.+.-.+..++
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCC
Confidence 444 88888899999999988988877775551 111111222445555555666666555543
No 455
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=72.29 E-value=50 Score=28.46 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=50.8
Q ss_pred ecCCCeeEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEE---EeC-CCCEEEEEeCCCcEE
Q 043707 233 RHYDAVSCLSLNAE-------QGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV---VAG-FDSLVFTGSADGTVK 301 (347)
Q Consensus 233 ~h~~~V~~l~~~~~-------~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i---~~~-~~~~l~s~~~dg~I~ 301 (347)
.+...|+||+--.. -..|+.|.++|.|.|.|-.....+.+++-..-++.-. .|. -|..|+.++.||.|+
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence 35667888875331 3589999999999999998888888877554444222 222 344889999999988
Q ss_pred EE
Q 043707 302 VW 303 (347)
Q Consensus 302 vw 303 (347)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 65
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.38 E-value=77 Score=28.41 Aligned_cols=103 Identities=11% Similarity=0.226 Sum_probs=61.0
Q ss_pred CeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCEEEEEEe---------------cCCCcEEEEEeCCCC-EEEEE
Q 043707 237 AVSCLSLNAEQGLLYSGSWD------KTLKVWRISDCKCLESIN---------------AHDDAINSVVAGFDS-LVFTG 294 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~d------g~i~vwdl~~~~~~~~~~---------------~h~~~v~~i~~~~~~-~l~s~ 294 (347)
..-.|++.+++.++++.-.+ ..|..++.. ++.+..+. .....+-.|+++|++ .|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34567776777777776666 778888865 66544441 123457899999998 35544
Q ss_pred eC-----CC--c-------EEEEEcccCC--ccceeeehhhhhc-----cCCcEEEEEEccCCCEEEE
Q 043707 295 SA-----DG--T-------VKVWRRELQG--KGTKHFLAQVLLK-----QENAITALAVNQESAVVYC 341 (347)
Q Consensus 295 ~~-----dg--~-------I~vwd~~~~~--~~~~~~~~~~~~~-----h~~~V~~l~~~p~~~~l~s 341 (347)
.+ |+ . ++++...... ..... ....+.. ....|..+.+.+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~-~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAE-YAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceE-EEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 32 22 1 5565554322 11111 1222221 4567999999999987764
No 457
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.13 E-value=12 Score=21.28 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=22.6
Q ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEec
Q 043707 249 LLYSGSWDKTLKVWRISDCKCLESINA 275 (347)
Q Consensus 249 ~l~s~s~dg~i~vwdl~~~~~~~~~~~ 275 (347)
.++.++.||.|.-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466778999999999999998877763
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=71.05 E-value=98 Score=29.51 Aligned_cols=90 Identities=8% Similarity=0.014 Sum_probs=40.7
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCEEEE--EEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhh
Q 043707 246 EQGLLYSGSWDK---TLKVWRISDCKCLE--SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVL 320 (347)
Q Consensus 246 ~~~~l~s~s~dg---~i~vwdl~~~~~~~--~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~ 320 (347)
++.+.+.|+.++ .+..||.++.+-.. .+....... +++. -++.|+..| |.+.+||.++. .+.....+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~-~~~~IYv~G--G~~e~ydp~~~----~W~~~~~m 433 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALV-FGRRLFLVG--RNAEFYCESSN----TWTLIDDP 433 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEE-ECCEEEEEC--CceEEecCCCC----cEeEcCCC
Confidence 456666666543 46678876543221 111111111 2222 245443333 35678887532 23333322
Q ss_pred hccCCcEEEEEEccCCCEEEEecCC
Q 043707 321 LKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 321 ~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
.........+. -+++..+.||.+
T Consensus 434 ~~~r~~~~~~v--~~~~IYviGG~~ 456 (480)
T PHA02790 434 IYPRDNPELII--VDNKLLLIGGFY 456 (480)
T ss_pred CCCccccEEEE--ECCEEEEECCcC
Confidence 22222222222 256777777765
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.66 E-value=1.3e+02 Score=30.73 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=56.3
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCE-----EEEEEecCCCc----------EEEEEeCCCC-EEEEEeCCC
Q 043707 236 DAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCK-----CLESINAHDDA----------INSVVAGFDS-LVFTGSADG 298 (347)
Q Consensus 236 ~~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~-----~~~~~~~h~~~----------v~~i~~~~~~-~l~s~~~dg 298 (347)
.+...++|+| +...||.-...|...|||+.... .+.....+.+. -..|.|..+. .|+.+ .-.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCC
Confidence 4566799999 46789999999999999992111 11111111122 2366776654 44444 345
Q ss_pred cEEEEEcccCCccceeeehhhhhccCCcEEEEEEccC
Q 043707 299 TVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQE 335 (347)
Q Consensus 299 ~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~ 335 (347)
.+.++|++..... ..-........|.+++-++.
T Consensus 225 ~l~~~d~~~~~~~----~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQT----EYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCcc----chhccCCChhheeeEEecCC
Confidence 6788888744320 11122234567888888887
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=70.47 E-value=19 Score=34.03 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCEEEEecCCCcEEEEeC-CC-cceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707 133 GDLLYTGSDSKNIRVWKN-LK-EFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vwd~-~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
..++|.|+..|-|++||. .. ....+.+-..+|..|..+.+|.++++.+. ..+.+-|+.-..
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik~ 635 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIKY 635 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccccc
Confidence 459999999999999993 32 24456677789999999999988776664 478888876543
No 461
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=70.25 E-value=1.4e+02 Score=30.93 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=114.2
Q ss_pred ccEEEEee---c---CCEEEEe---cCCCcEEEEeCCCc-----ceeeecCCCCeeEEE--EeCC-CCEEEEEeCCCcEE
Q 043707 124 GHIYSLAA---S---GDLLYTG---SDSKNIRVWKNLKE-----FSGFKSNSGLVKAII--ITGD-SNKIFTGHQDGKIR 186 (347)
Q Consensus 124 ~~V~~l~~---~---~~~l~tg---~~dg~I~vwd~~~~-----~~~~~~h~~~V~~l~--~sp~-~~~l~s~~~Dg~I~ 186 (347)
++|..+.. + +..++|+ ..||++|+....-. ...+.+ -..++.+. +.++ .++|+.+--+ .-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceE
Confidence 45655552 1 2355555 45899999974322 122333 34566666 4442 2255544433 445
Q ss_pred EEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeee--------ecCCCeeEEEEcCCCCEEEEEeCCCc
Q 043707 187 IWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKI--------RHYDAVSCLSLNAEQGLLYSGSWDKT 258 (347)
Q Consensus 187 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~~~~~~~l~s~s~dg~ 258 (347)
+..+... .......+.......++.+......++++......+.. .....+++.....+...++.++.++.
T Consensus 432 vl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~ 510 (1096)
T KOG1897|consen 432 VLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLA 510 (1096)
T ss_pred EEEEccc-eEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccE
Confidence 5566543 33333334444556667777777766665544433322 22344555555555566777776777
Q ss_pred EEEEeCCCCEEEEEE-ecCCCcEEEEEeCCCC-------EEEEEeCCCcEEEEEcccCCccceeeehhhhhcc--CCcEE
Q 043707 259 LKVWRISDCKCLESI-NAHDDAINSVVAGFDS-------LVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQ--ENAIT 328 (347)
Q Consensus 259 i~vwdl~~~~~~~~~-~~h~~~v~~i~~~~~~-------~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h--~~~V~ 328 (347)
+...++..+...... +.-...|.|+.++|-+ +++.|..+..+.+--...... ......+... ...|.
T Consensus 511 l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~---~~~~~~l~~~~iPRSIl 587 (1096)
T KOG1897|consen 511 LFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI---LITHEQLSGEIIPRSIL 587 (1096)
T ss_pred EEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc---eeeeeccCCCccchhee
Confidence 777777665522211 1224578899888642 778887776665543321111 0000111111 12344
Q ss_pred EEEEccCCCEEEEecCCC
Q 043707 329 ALAVNQESAVVYCGSSDG 346 (347)
Q Consensus 329 ~l~~~p~~~~l~sgs~DG 346 (347)
-..|--|..+|.++..||
T Consensus 588 ~~~~e~d~~yLlvalgdG 605 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDG 605 (1096)
T ss_pred eEEeeccceEEEEEcCCc
Confidence 555555678888888887
No 462
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.86 E-value=1.3e+02 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCEEEEEEec-C-CC-------cEEEEEeCC-CC----EEEEEeCCCcEEEEEcccCCc
Q 043707 256 DKTLKVWRISDCKCLESINA-H-DD-------AINSVVAGF-DS----LVFTGSADGTVKVWRRELQGK 310 (347)
Q Consensus 256 dg~i~vwdl~~~~~~~~~~~-h-~~-------~v~~i~~~~-~~----~l~s~~~dg~I~vwd~~~~~~ 310 (347)
.+.|.-.|+++++..-.++. | +- ...-+.+.. ++ .++.+..+|.+.+.|.++++.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 45678888899988776654 2 11 111112222 44 788999999999999987643
No 463
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.77 E-value=92 Score=28.64 Aligned_cols=205 Identities=10% Similarity=0.153 Sum_probs=79.8
Q ss_pred cCC-EEEEecCCCcEEEE--eCCC-cceeeecCCC-CeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccccc
Q 043707 132 SGD-LLYTGSDSKNIRVW--KNLK-EFSGFKSNSG-LVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPT 206 (347)
Q Consensus 132 ~~~-~l~tg~~dg~I~vw--d~~~-~~~~~~~h~~-~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~ 206 (347)
+|+ +|+.+..||.-.+| |+.. ....+....+ ......++|+.+.++-......|+-.|+++.+......+...-.
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 454 45555556654444 5443 2333333322 22345667777776555455677777887765432222221111
Q ss_pred ccceEEeccCCCeEE---------------------------------EEeecceeeeeecCCCeeEEEEcCCCC-EEEE
Q 043707 207 FKDYVKSSVNPKNYV---------------------------------EVRRNRNVLKIRHYDAVSCLSLNAEQG-LLYS 252 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s 252 (347)
...-.....+...++ .+..++......-...+..+.|+|... +|+-
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 000111111111111 122222333334455677888999644 4444
Q ss_pred Ee---CCCc-EEEEeCC-CCEEEEEEecCC--CcEEEEEeCCCC--EEEE----EeCCCcEEEEEcccCCccceeeehhh
Q 043707 253 GS---WDKT-LKVWRIS-DCKCLESINAHD--DAINSVVAGFDS--LVFT----GSADGTVKVWRRELQGKGTKHFLAQV 319 (347)
Q Consensus 253 ~s---~dg~-i~vwdl~-~~~~~~~~~~h~--~~v~~i~~~~~~--~l~s----~~~dg~I~vwd~~~~~~~~~~~~~~~ 319 (347)
|- ++.. -+||-++ .+.....+..+. ..+..=.|.+|| +.+. ++.+..|.-+|+.+.+. . .+
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~--~~-- 279 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER--R--RL-- 279 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E--E--EE--
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc--e--EE--
Confidence 33 3432 3667654 233444443332 234444688888 2222 22344555566654432 1 11
Q ss_pred hhccCCcEEEEEEccCCCEEEEecC
Q 043707 320 LLKQENAITALAVNQESAVVYCGSS 344 (347)
Q Consensus 320 ~~~h~~~V~~l~~~p~~~~l~sgs~ 344 (347)
....+...+--++||++++-=+.
T Consensus 280 --~~~p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 280 --MEMPWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp --EEE-SEEEEEE-TTSSEEEEEE-
T ss_pred --EeCCceeeeEEcCCCCEEEecCC
Confidence 11113345555678887765433
No 464
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.51 E-value=65 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=15.0
Q ss_pred ccCCcEEEEEEccCC-CEEEEe
Q 043707 322 KQENAITALAVNQES-AVVYCG 342 (347)
Q Consensus 322 ~h~~~V~~l~~~p~~-~~l~sg 342 (347)
.|....+.|++.|++ +++++|
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 345577899999988 555554
No 465
>PHA03098 kelch-like protein; Provisional
Probab=69.04 E-value=1.1e+02 Score=29.42 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCEEEEEeCC--------CcEEEEeCCCCEE--EEEEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEccc
Q 043707 246 EQGLLYSGSWD--------KTLKVWRISDCKC--LESINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRREL 307 (347)
Q Consensus 246 ~~~~l~s~s~d--------g~i~vwdl~~~~~--~~~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~~ 307 (347)
++.+++.|+.+ ..+.+||..+.+- +..+.........+.+ .+.+++.||.+ +.|.+||...
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 34555555532 1378888876542 2222111111122222 23355566654 4678888763
No 466
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=68.63 E-value=1.1e+02 Score=29.25 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=38.2
Q ss_pred CcEEEEeCCCCEEEEEEecC-CCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeehhhhhccCCcEEEEEEcc
Q 043707 257 KTLKVWRISDCKCLESINAH-DDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVNQ 334 (347)
Q Consensus 257 g~i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p 334 (347)
..|++.+...++........ ...|.+.+.. +++++.+-.++.+.++.+........ ............|.|+...|
T Consensus 427 ~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 427 KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN-DPQVLVALSGGELVYFELDDNKISVS-DNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEESSSTSEEEEEE-TTS---SEEEES-SSEEEEEE-TTEEEEEEEETTEEEEE-EE----EE-SS-EEEEE---
T ss_pred CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC-CCEEEEEEeCCcEEEEEEECCceeee-eeccccccCCCceEEEEeCC
Confidence 34777887777776665433 3345554443 56777777788999998874432100 00011112456888888766
No 467
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=68.43 E-value=18 Score=33.62 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=85.0
Q ss_pred eecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707 157 FKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236 (347)
Q Consensus 157 ~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 236 (347)
+..--..|..+-..|+|+.++.-.. .++.|+++.+......+.+...|.. ...
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~--------------------------~~~ 268 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGD--------------------------SRH 268 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCc--------------------------hHH
Confidence 3334456788889999998777665 6889999987764433332221110 001
Q ss_pred Cee-EEEEcCCCCEEEEEeCCCcEEEE-eCCCC-E----EEEEEecCCCcEEEEEeCCCC---EEEEEeCCCcEEEEEcc
Q 043707 237 AVS-CLSLNAEQGLLYSGSWDKTLKVW-RISDC-K----CLESINAHDDAINSVVAGFDS---LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 237 ~V~-~l~~~~~~~~l~s~s~dg~i~vw-dl~~~-~----~~~~~~~h~~~v~~i~~~~~~---~l~s~~~dg~I~vwd~~ 306 (347)
.|+ .+.+-..+.-|+.++.||.|.-| |.+.+ . .++.++-....+..+ .|+. -+++-...|++.++...
T Consensus 269 ~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 269 QVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred HHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecc
Confidence 122 12222345668888889998877 54432 2 233333333334333 2332 67777888999888664
Q ss_pred cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEe
Q 043707 307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCG 342 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sg 342 (347)
.... .+.+.. -..+.-++++|++.+|++-
T Consensus 347 ~~~~----lL~~~~---~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 347 SEKL----LLFERA---YQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred cCcc----eehhhh---hcCcceeeeCcccchheee
Confidence 2211 111211 2256678899988877753
No 468
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=67.15 E-value=1.5e+02 Score=30.18 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=42.6
Q ss_pred CcEEEEEeCCCC-EEEEEeCCCcEEEEEcccCCcccee----eehh---hh------hccCCcEEEEEEccCCCEEEEec
Q 043707 278 DAINSVVAGFDS-LVFTGSADGTVKVWRRELQGKGTKH----FLAQ---VL------LKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 278 ~~v~~i~~~~~~-~l~s~~~dg~I~vwd~~~~~~~~~~----~~~~---~~------~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
..|.+|....-+ .++..-.||+|.++|..+.+..... .... .+ ..+...+..++|+|.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 456666654434 7888999999999999865321111 0111 11 01122556789999998888777
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
.||
T Consensus 340 ~~~ 342 (753)
T PF11635_consen 340 EDG 342 (753)
T ss_pred cCC
Confidence 665
No 469
>PRK13615 lipoprotein LpqB; Provisional
Probab=66.15 E-value=1.4e+02 Score=29.23 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=74.7
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEc
Q 043707 165 KAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLN 244 (347)
Q Consensus 165 ~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 244 (347)
.+++.++++..++....++.+.++.......... ....++.-+|.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~-----------------------------------~~~~Lt~PS~d 381 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVLLD-----------------------------------TRPGLVAPSLD 381 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcceeec-----------------------------------cCCccccCcCc
Confidence 6788999998888887788787776652211000 11123333444
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCEEEE-EEec-CCCcEEEEEeCCCC----EEEEEeCCCcEEEEEcccCCcc-cee-e
Q 043707 245 AEQGLLYSGSWDKTLKVWRIS-DCKCLE-SINA-HDDAINSVVAGFDS----LVFTGSADGTVKVWRRELQGKG-TKH-F 315 (347)
Q Consensus 245 ~~~~~l~s~s~dg~i~vwdl~-~~~~~~-~~~~-h~~~v~~i~~~~~~----~l~s~~~dg~I~vwd~~~~~~~-~~~-~ 315 (347)
+++ .+-+...+...++.... ++.... .... -...|..+..++|| +|+-....++|.|--+...+.. ... .
T Consensus 382 ~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~ 460 (557)
T PRK13615 382 AQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTT 460 (557)
T ss_pred CCC-CEEEEeCCCceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeee
Confidence 444 33333332223333322 122211 1111 23579999999999 2333344567877655432110 111 1
Q ss_pred ehhhhhccCCcEEEEEEccCCCEEEEec
Q 043707 316 LAQVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 316 ~~~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
....+..-...+.+++|..++.+++.+.
T Consensus 461 ~p~~l~~~l~~v~sl~W~~~~~laVl~~ 488 (557)
T PRK13615 461 TPLELLASPGTPLDATWVDELDVATLTL 488 (557)
T ss_pred ccEEcccCcCcceeeEEcCCCEEEEEec
Confidence 1122222233889999999988766653
No 470
>PRK13684 Ycf48-like protein; Provisional
Probab=65.50 E-value=1e+02 Score=27.70 Aligned_cols=104 Identities=10% Similarity=0.075 Sum_probs=56.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCEEEEEEe-cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccc
Q 043707 235 YDAVSCLSLNAEQGLLYSGSWDKTLKV-WRISDCKCLESIN-AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGT 312 (347)
Q Consensus 235 ~~~V~~l~~~~~~~~l~s~s~dg~i~v-wdl~~~~~~~~~~-~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~ 312 (347)
...+..+.+.+++.+++++. .|.+.. +| ..++....+. .-...++.+.+.+++.++..+..|.+.+=..+ .+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~-- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLE-- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCC--
Confidence 34678888999877766665 555443 22 2223222222 23457889999888855555667776532122 221
Q ss_pred eeeehhhh-hccCCcEEEEEEccCCCEEEEec
Q 043707 313 KHFLAQVL-LKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 313 ~~~~~~~~-~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.......- ......+.++.+.+++..+++|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 11111111 11223578899998877665543
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.84 E-value=20 Score=35.50 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCC
Q 043707 162 GLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNP 195 (347)
Q Consensus 162 ~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~ 195 (347)
..++++.-+|.++-++.++.||.|++++......
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 4577888899999999999999999999876643
No 472
>PRK10115 protease 2; Provisional
Probab=63.39 E-value=1.7e+02 Score=29.44 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=35.2
Q ss_pred EEeecCCEEEEecC-CC----cEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEeCC------CcEEEEecCCC
Q 043707 128 SLAASGDLLYTGSD-SK----NIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGHQD------GKIRIWKVSRK 193 (347)
Q Consensus 128 ~l~~~~~~l~tg~~-dg----~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~D------g~I~vwd~~~~ 193 (347)
.+++++++|+.+-+ +| .|++.|............+.-..++|.++++.|+-...+ ..|+.+++.+.
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 34567777665522 22 467777643321111111112469999988766665443 24666666655
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=62.78 E-value=1.3e+02 Score=27.75 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred eCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCC-
Q 043707 170 TGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQG- 248 (347)
Q Consensus 170 sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~- 248 (347)
.|...+|+....++=+.+||+..+..... -.+.++.+..-.+-.
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~-----------------------------------~~Gr~NNVDvrygf~l 109 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSL-----------------------------------PVGRPNNVDVRYGFPL 109 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE------------------------------------SS-EEEEEEEEEEEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEee-----------------------------------cCCCcceeeeecceec
Q ss_pred ------EEEEEeCC---CcEEEEeCC-CCEEEEEEecCCCcE---------EEEEeCCCC---EEEEEeCCCcEEEEEcc
Q 043707 249 ------LLYSGSWD---KTLKVWRIS-DCKCLESINAHDDAI---------NSVVAGFDS---LVFTGSADGTVKVWRRE 306 (347)
Q Consensus 249 ------~l~s~s~d---g~i~vwdl~-~~~~~~~~~~h~~~v---------~~i~~~~~~---~l~s~~~dg~I~vwd~~ 306 (347)
++++...+ .+|++|.+. ....+..+.....++ .|+.-++.. +++....+|.+..|.+.
T Consensus 110 ~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~ 189 (381)
T PF02333_consen 110 NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELT 189 (381)
T ss_dssp TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEE
T ss_pred CCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEE
Q ss_pred cCCccceeeehhhhhccCCcEEEEEEccCCCEEEEecCC
Q 043707 307 LQGKGTKHFLAQVLLKQENAITALAVNQESAVVYCGSSD 345 (347)
Q Consensus 307 ~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l~sgs~D 345 (347)
..+.+.....+..-..-...+..++.......|+.|-+|
T Consensus 190 ~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 190 DDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp E-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=62.19 E-value=27 Score=19.73 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=18.7
Q ss_pred cCCCcEEEEEeCCCC--EEEEEeCC--CcEEEE
Q 043707 275 AHDDAINSVVAGFDS--LVFTGSAD--GTVKVW 303 (347)
Q Consensus 275 ~h~~~v~~i~~~~~~--~l~s~~~d--g~I~vw 303 (347)
..........|+||| +++++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778899998 55566666 766666
No 475
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=61.45 E-value=2.3e+02 Score=30.27 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred CcEEEEe----CCCcceeeecC----------CCCeeEEEEeCCCCEEEEEeCCCcEEEEec-CCCCCceeeeecccccc
Q 043707 143 KNIRVWK----NLKEFSGFKSN----------SGLVKAIIITGDSNKIFTGHQDGKIRIWKV-SRKNPSVHKRVGSLPTF 207 (347)
Q Consensus 143 g~I~vwd----~~~~~~~~~~h----------~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~-~~~~~~~~~~~~~~~~~ 207 (347)
|.+.|+| ..+.-+.+..| ++.|..++=... +|++|... +|.||++ +.........
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G--~l~~~~Gq-KI~v~~l~r~~~ligVaF------- 1134 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG--HLLSSQGQ-KIIVRKLDRDSELIGVAF------- 1134 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc--EEEEccCc-EEEEEEeccCCcceeeEE-------
Q ss_pred cceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCc---EEEEE
Q 043707 208 KDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA---INSVV 284 (347)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~---v~~i~ 284 (347)
-.-++...+..-=+++|+.|.--..|.+......-....+-..+.. +.++.
T Consensus 1135 --------------------------iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~E 1188 (1366)
T KOG1896|consen 1135 --------------------------IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTE 1188 (1366)
T ss_pred --------------------------eccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeee
Q ss_pred eCCCC---EEEEEeCCCcEEEE
Q 043707 285 AGFDS---LVFTGSADGTVKVW 303 (347)
Q Consensus 285 ~~~~~---~l~s~~~dg~I~vw 303 (347)
|--+| .++++..|+.|+++
T Consensus 1189 FLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1189 FLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred eEEcCCeeEEEEEcCCCcEEEE
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=61.42 E-value=38 Score=28.95 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=44.7
Q ss_pred EEEEeCCCCEEEEEEecC-CCcEEEEEeCCCC-EEEEEeC-C--CcEEEEEcccCCccceeeehhhhhccCCcEEEEEEc
Q 043707 259 LKVWRISDCKCLESINAH-DDAINSVVAGFDS-LVFTGSA-D--GTVKVWRRELQGKGTKHFLAQVLLKQENAITALAVN 333 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~h-~~~v~~i~~~~~~-~l~s~~~-d--g~I~vwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 333 (347)
-.+||+.+.+.. .+... +.....-.+-+|| +|.+|+. | ..+++++.....................+--.+..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357888776532 22222 2222222456777 6666654 3 457888765311101111111112223455566677
Q ss_pred cCCCEEEEecCC
Q 043707 334 QESAVVYCGSSD 345 (347)
Q Consensus 334 p~~~~l~sgs~D 345 (347)
|||+.|+.||.+
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899999999875
No 477
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=61.14 E-value=1.4e+02 Score=27.84 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=90.0
Q ss_pred CEEEEecCCCcEEEEeCCCcc-eeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCc----------------
Q 043707 134 DLLYTGSDSKNIRVWKNLKEF-SGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPS---------------- 196 (347)
Q Consensus 134 ~~l~tg~~dg~I~vwd~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~---------------- 196 (347)
++++.-+.||.+.+++-.... ..+-..---.-.+++.+....|++++.+..|..|....-...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 588889999999999865443 222222222335678888789999999988888875321100
Q ss_pred -------eeeeecccccccceEEeccCC--------CeEEEEeecceeeee-ecCCCeeEEE-Ec----CCC---CEEEE
Q 043707 197 -------VHKRVGSLPTFKDYVKSSVNP--------KNYVEVRRNRNVLKI-RHYDAVSCLS-LN----AEQ---GLLYS 252 (347)
Q Consensus 197 -------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~h~~~V~~l~-~~----~~~---~~l~s 252 (347)
....++........+...... ..++.+.......+. +......|++ +. .++ ..++.
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV 305 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV 305 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE
Confidence 000000000000011110111 112222222222111 2222223322 11 122 25888
Q ss_pred EeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeC----CCCEEEEEeCCCcEEEEEcccC
Q 043707 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAG----FDSLVFTGSADGTVKVWRRELQ 308 (347)
Q Consensus 253 ~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~----~~~~l~s~~~dg~I~vwd~~~~ 308 (347)
++.++++.||. +.+.+-..+....+| +|... -+|.|++-+.+|.|.+-=+-+.
T Consensus 306 ~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 306 GTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 88999999997 344444444334444 34332 2579999999999999877654
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=60.45 E-value=75 Score=24.35 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=39.7
Q ss_pred EEEEecCCCcEEEEeCCCc---------ceeeecCCCCeeEEEEeC-----CCCEEEEEeCCCcEEEEecCCCCCceeee
Q 043707 135 LLYTGSDSKNIRVWKNLKE---------FSGFKSNSGLVKAIIITG-----DSNKIFTGHQDGKIRIWKVSRKNPSVHKR 200 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~~~---------~~~~~~h~~~V~~l~~sp-----~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~ 200 (347)
-|+.++.-|+|.|.+.... -..+-.-...|++|+--+ +...|+.|+. ..|..||+........+.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence 5777778888999873321 112222345677776543 2345666664 578899998876554443
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=1.2e+02 Score=32.29 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=43.9
Q ss_pred cCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCc-------cce------------eeehhhhhccCCcEEEEEEccC
Q 043707 275 AHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGK-------GTK------------HFLAQVLLKQENAITALAVNQE 335 (347)
Q Consensus 275 ~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~-------~~~------------~~~~~~~~~h~~~V~~l~~~p~ 335 (347)
.....|+++....+|.++-+|.|| .+|.+..... ..+ ..+.+....+..+|..|+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 335578899988889888888888 5566543221 000 0011111255779999999888
Q ss_pred CCEEEEecCCC
Q 043707 336 SAVVYCGSSDG 346 (347)
Q Consensus 336 ~~~l~sgs~DG 346 (347)
...|++-++.|
T Consensus 254 R~IlY~lsek~ 264 (1311)
T KOG1900|consen 254 RNILYVLSEKG 264 (1311)
T ss_pred cceeeeeccCc
Confidence 77777766544
No 480
>PRK13614 lipoprotein LpqB; Provisional
Probab=59.38 E-value=1.8e+02 Score=28.47 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=38.8
Q ss_pred cEEEEEeCCCC--EEEEEeCCCc--EEEEEcccCCccceeeeh--hhhhccCCcEEEEEEccCCCEEEEec
Q 043707 279 AINSVVAGFDS--LVFTGSADGT--VKVWRRELQGKGTKHFLA--QVLLKQENAITALAVNQESAVVYCGS 343 (347)
Q Consensus 279 ~v~~i~~~~~~--~l~s~~~dg~--I~vwd~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~l~sgs 343 (347)
.|..+..++|| ..+....||. |.|=-+.....+....+. ..+ .....+.+++|..++.+++.+.
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred eeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEEEEEec
Confidence 49999999999 3333434554 777655433332211121 122 3346899999999888777654
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=58.88 E-value=1.3e+02 Score=26.60 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=86.5
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeE
Q 043707 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSC 240 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 240 (347)
.+.+.++.++.+ +.+.+..+.-++|.|+.+......+. .++ -.+--.+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~--~ln----------------------------t~gyayg 133 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIG--FLN----------------------------TDGYAYG 133 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceec--ccc----------------------------CCceEEE
Confidence 456777888766 77788788889999998765322211 110 1122344
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEecCCCcEEEEEeCCCCEEEEEeCCCcEEEEEcccCCccceeeeh
Q 043707 241 LSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHFLA 317 (347)
Q Consensus 241 l~~~~~~~~l~s~s~dg~i~vwdl~~~~---~~~~~~~h~~~v~~i~~~~~~~l~s~~~dg~I~vwd~~~~~~~~~~~~~ 317 (347)
+.. .|++.+.+..|.-+.+.|+.+.. ...........-..++.+- .+-+.+..|+-+++-|+..... +
T Consensus 134 v~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISG-n~AYvA~~d~GL~ivDVSnp~s-----P- 204 (370)
T COG5276 134 VYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISG-NYAYVAWRDGGLTIVDVSNPHS-----P- 204 (370)
T ss_pred EEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEec-CeEEEEEeCCCeEEEEccCCCC-----C-
Confidence 444 58899999988788899997643 2333333334345566652 3555667889999999974332 1
Q ss_pred hhhhcc--CC-cEEEEEEccCCCEEEEec
Q 043707 318 QVLLKQ--EN-AITALAVNQESAVVYCGS 343 (347)
Q Consensus 318 ~~~~~h--~~-~V~~l~~~p~~~~l~sgs 343 (347)
.+.+| .+ .+.++..+++.-+++...
T Consensus 205 -vli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 205 -VLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred -eEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 22222 22 677787777766665543
No 482
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=57.06 E-value=35 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.9
Q ss_pred CCEEEEEeCCCcEEEEEcc
Q 043707 288 DSLVFTGSADGTVKVWRRE 306 (347)
Q Consensus 288 ~~~l~s~~~dg~I~vwd~~ 306 (347)
++.++.++.||.|..+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 6789999999999999875
No 483
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.82 E-value=91 Score=29.25 Aligned_cols=107 Identities=13% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCEEEEecCCCcEEEE-eCCCc-------ceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeeccc
Q 043707 133 GDLLYTGSDSKNIRVW-KNLKE-------FSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSL 204 (347)
Q Consensus 133 ~~~l~tg~~dg~I~vw-d~~~~-------~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~ 204 (347)
|.-|+.+..||.|.-| |..+. .+.++-....|..+.--.+.+-+++-...|++.++.-...+......
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---- 355 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---- 355 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----
Confidence 4467888999999988 33222 12222222333333222233457777777777777654443322221
Q ss_pred ccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Q 043707 205 PTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI 273 (347)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~ 273 (347)
-.+.+..++++|.+.+|++-. .|.|+++.+++..+--++
T Consensus 356 -----------------------------~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 356 -----------------------------AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred -----------------------------hhcCcceeeeCcccchheeec-CCceEEEEecCCCCCccH
Confidence 223566789999999888765 577999998776544333
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=56.74 E-value=2.3e+02 Score=28.88 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=48.0
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEE----ec---------------CCCcEEEEEeCCCC-EEEE
Q 043707 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI----NA---------------HDDAINSVVAGFDS-LVFT 293 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~----~~---------------h~~~v~~i~~~~~~-~l~s 293 (347)
....|.++....-+..++..-.||+|.++|-.+.+.+... .. +...+..++|+|.+ .++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4566788887777889999999999999998877655443 10 01123357799987 6666
Q ss_pred EeCCCcEE
Q 043707 294 GSADGTVK 301 (347)
Q Consensus 294 ~~~dg~I~ 301 (347)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 67778765
No 485
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.57 E-value=1.6e+02 Score=26.25 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=24.5
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEecC
Q 043707 164 VKAIIITGDSNKIFTGHQDGKIRIWKVS 191 (347)
Q Consensus 164 V~~l~~sp~~~~l~s~~~Dg~I~vwd~~ 191 (347)
-+.|+++|.+...++...-+...+||..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCC
Confidence 4689999988888888888999999997
No 486
>PHA02790 Kelch-like protein; Provisional
Probab=52.91 E-value=2.1e+02 Score=27.25 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCE--EEEEEecCCCcEEEEEeCCCCEEEEEeCC-----CcEEEEEcc
Q 043707 246 EQGLLYSGSWDKTLKVWRISDCK--CLESINAHDDAINSVVAGFDSLVFTGSAD-----GTVKVWRRE 306 (347)
Q Consensus 246 ~~~~l~s~s~dg~i~vwdl~~~~--~~~~~~~h~~~v~~i~~~~~~~l~s~~~d-----g~I~vwd~~ 306 (347)
++.+.+.| |...+||.++.+ .+..+....... .++...+.+.+.||.+ ..|.+||..
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 34555555 356788886543 223232222222 2233333366666654 356677765
No 487
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.81 E-value=80 Score=22.06 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred CcEEEEeCCCcceeeecCCCCeeEEEEeCCCCEEEEEe-CCCcEEEEecCCC
Q 043707 143 KNIRVWKNLKEFSGFKSNSGLVKAIIITGDSNKIFTGH-QDGKIRIWKVSRK 193 (347)
Q Consensus 143 g~I~vwd~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~Dg~I~vwd~~~~ 193 (347)
+.|..||..+......+- ..-..|.++|++++|+.++ ..+.|++++....
T Consensus 36 ~~Vvyyd~~~~~~va~g~-~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGF-SFANGIAISPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred ceEEEEeCCEeEEeeccC-CCCceEEEcCCCCEEEEEeccCCeEEEEEecCC
No 488
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=50.91 E-value=98 Score=31.25 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=52.1
Q ss_pred eEEEEeCCCCEEEEEeCCC-----cEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCCCee
Q 043707 165 KAIIITGDSNKIFTGHQDG-----KIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVS 239 (347)
Q Consensus 165 ~~l~~sp~~~~l~s~~~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 239 (347)
..+.|-|+|..++|-+.|| .|+.+.-+.-+.. ...+..+-...+.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHG------------------------------ef~lr~~~dEk~~ 299 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHG------------------------------EFDLRVGCDEKAF 299 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccC------------------------------CccccCCchhhhh
Confidence 3478999999999988665 2444433221100 0000112334455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEecCCCcEEEEEeCCCC
Q 043707 240 CLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289 (347)
Q Consensus 240 ~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~ 289 (347)
.++|+-....++.+ ..+.+++|-..+..-.....-.-..+.-+.|+|..
T Consensus 300 ~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 300 LENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred hhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeecccc
Confidence 66776655444444 35679999877655433333333446667888864
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=2.8e+02 Score=27.99 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=37.7
Q ss_pred CcEEEEeC-CCcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCC
Q 043707 143 KNIRVWKN-LKEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKN 194 (347)
Q Consensus 143 g~I~vwd~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~ 194 (347)
-.|+|++. +..+.......+.+..+-|+.+. .|++...||+++||++-...
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh
Confidence 35788874 44455555555688899999775 77788899999999987553
No 490
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=50.53 E-value=2.3e+02 Score=27.01 Aligned_cols=40 Identities=5% Similarity=0.087 Sum_probs=25.0
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEecC
Q 043707 237 AVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKCLESINAH 276 (347)
Q Consensus 237 ~V~~l~~~~-~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~h 276 (347)
.++++.+.+ ++.+|+++-.-..|...|.++++..-.+-.+
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 378888888 4555555544558888898888877776544
No 491
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=50.25 E-value=11 Score=36.54 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=56.9
Q ss_pred EEEEeCCCCEEEEEEecCCCcEEEEEeCCCC-EEEEEe-CCCcEEEEEcccCCccceeeehhhhhcc-----CCcEEEEE
Q 043707 259 LKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGS-ADGTVKVWRRELQGKGTKHFLAQVLLKQ-----ENAITALA 331 (347)
Q Consensus 259 i~vwdl~~~~~~~~~~~h~~~v~~i~~~~~~-~l~s~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~h-----~~~V~~l~ 331 (347)
+.+=|+.....+..|++|..++..++|.+.+ ++++++ ....|.++.+... ........+.+..| ...|-.++
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet-~~t~~~~~qs~~~s~ra~t~aviqdic 375 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMET-VCTVNVSDQSLVVSPRANTAAVIQDIC 375 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccc-cccccccccccccchhcchHHHHHHHh
Confidence 5566777778888999999999999999888 555555 4455666655311 10111112222222 23466788
Q ss_pred EccCCCEEEEecCCCC
Q 043707 332 VNQESAVVYCGSSDGL 347 (347)
Q Consensus 332 ~~p~~~~l~sgs~DG~ 347 (347)
|+....++..++.+|.
T Consensus 376 fs~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 376 FSEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhhcceEeecccCCC
Confidence 8888888888888873
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.76 E-value=1.8e+02 Score=25.53 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=42.6
Q ss_pred cCCCeeEEEEcCCCCEEEEEe------CCCcEEEEeCCCCEEEEEEec-----CCCcEEEEEeCC-CC--EEEEEe-CCC
Q 043707 234 HYDAVSCLSLNAEQGLLYSGS------WDKTLKVWRISDCKCLESINA-----HDDAINSVVAGF-DS--LVFTGS-ADG 298 (347)
Q Consensus 234 h~~~V~~l~~~~~~~~l~s~s------~dg~i~vwdl~~~~~~~~~~~-----h~~~v~~i~~~~-~~--~l~s~~-~dg 298 (347)
-.+.|+.|.|..+.++++.|. ....+..||+.+.. ...+.. -.++|..+.+.. |. +.++|. .++
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 346799999987767777764 35568889987653 333433 136777777643 22 444443 344
Q ss_pred --cEEEEEc
Q 043707 299 --TVKVWRR 305 (347)
Q Consensus 299 --~I~vwd~ 305 (347)
.|..||=
T Consensus 114 ~~~l~~~dG 122 (281)
T PF12768_consen 114 STFLMKYDG 122 (281)
T ss_pred CceEEEEcC
Confidence 4555543
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=47.57 E-value=2.4e+02 Score=26.27 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 043707 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267 (347)
Q Consensus 236 ~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~ 267 (347)
..|..+...+..++|++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 44889999998899999999999999999743
No 494
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=46.45 E-value=44 Score=17.47 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=14.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEE
Q 043707 238 VSCLSLNAEQGLLYSGSWDKTLKVW 262 (347)
Q Consensus 238 V~~l~~~~~~~~l~s~s~dg~i~vw 262 (347)
...+++.++|+++++-.....|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3456677666666665555555543
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.67 E-value=2.1e+02 Score=25.12 Aligned_cols=52 Identities=8% Similarity=0.151 Sum_probs=33.9
Q ss_pred CcEEEEeCCCcce--eeecCCCCeeEEEEeCCCCEEEEEe------CCCcEEEEecCCCC
Q 043707 143 KNIRVWKNLKEFS--GFKSNSGLVKAIIITGDSNKIFTGH------QDGKIRIWKVSRKN 194 (347)
Q Consensus 143 g~I~vwd~~~~~~--~~~~h~~~V~~l~~sp~~~~l~s~~------~Dg~I~vwd~~~~~ 194 (347)
..|++||...... .-.+-.+.|.+|.|..+.+.++.|. ....+..||..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4689999553321 2223457899999996666666664 34567788887664
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=44.88 E-value=2.2e+02 Score=25.21 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=80.8
Q ss_pred cccEEEEeecCCEEEEecCCCcEEEEeCCCcce----eeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 043707 123 EGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFS----GFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVH 198 (347)
Q Consensus 123 ~~~V~~l~~~~~~l~tg~~dg~I~vwd~~~~~~----~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~ 198 (347)
.+-+..+.+.+++.+.+..+.-++|.|+...-. .+-.-.+--.++.. .|++...+..|.-+.+.|+.+......
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 344566778899999998888899999654322 12112234445555 466888888666677889887653222
Q ss_pred eeecccccccceEEeccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEec
Q 043707 199 KRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK---CLESINA 275 (347)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~---~~~~~~~ 275 (347)
......+ ...-..++.+ |++-+.+.+|+-++|-|+.... .+....
T Consensus 164 agrya~~-----------------------------~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n- 211 (370)
T COG5276 164 AGRYALP-----------------------------GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN- 211 (370)
T ss_pred eeeeccC-----------------------------CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-
Confidence 2111111 1112334443 6788888899999999997542 333333
Q ss_pred CCCcEEEEEeCCCC
Q 043707 276 HDDAINSVVAGFDS 289 (347)
Q Consensus 276 h~~~v~~i~~~~~~ 289 (347)
....+.++..+++.
T Consensus 212 ~g~g~~sv~vsdnr 225 (370)
T COG5276 212 TGPGTYSVSVSDNR 225 (370)
T ss_pred cCCceEEEEecCCe
Confidence 12257777777665
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=44.20 E-value=2.4e+02 Score=25.28 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=85.7
Q ss_pred CeeEEEEeCCCCEEEEEeCC------CcEEEEecCCCCCceeeeecccccccceEEeccCCCeEEEEeecceeeeeecCC
Q 043707 163 LVKAIIITGDSNKIFTGHQD------GKIRIWKVSRKNPSVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRNVLKIRHYD 236 (347)
Q Consensus 163 ~V~~l~~sp~~~~l~s~~~D------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 236 (347)
-..+|++.+++.++++.-.+ ..|+.++.. ++......+... . ... .........+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~---~--~~~------------~~~~~~~~~N~ 147 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA---F--LPD------------ANGTSGRRNNR 147 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc---c--ccc------------cCccccccCCC
Confidence 45578887788777777666 677777766 443222211110 0 000 00001123566
Q ss_pred CeeEEEEcCCCCEEEEEeC-----CCc---------EEE--EeCCC-CEEEEEE----ec-----CCCcEEEEEeCCCCE
Q 043707 237 AVSCLSLNAEQGLLYSGSW-----DKT---------LKV--WRISD-CKCLESI----NA-----HDDAINSVVAGFDSL 290 (347)
Q Consensus 237 ~V~~l~~~~~~~~l~s~s~-----dg~---------i~v--wdl~~-~~~~~~~----~~-----h~~~v~~i~~~~~~~ 290 (347)
..-.|+++|+++.|+++.+ |+. ++| ||..+ ++....+ .. ....|..+.+.+++.
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 7889999999997666543 221 444 45444 3233332 21 345688888888873
Q ss_pred EEEEe------CCCcEEEEEcccCCc--cc-------------eeeehhhhhc---cCCcEEEEEEcc--CC-CEEEEec
Q 043707 291 VFTGS------ADGTVKVWRRELQGK--GT-------------KHFLAQVLLK---QENAITALAVNQ--ES-AVVYCGS 343 (347)
Q Consensus 291 l~s~~------~dg~I~vwd~~~~~~--~~-------------~~~~~~~~~~---h~~~V~~l~~~p--~~-~~l~sgs 343 (347)
|++-- ....++|+.+..... .. ...++..+.. ....+..|+|.| +| ..|+..+
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvs 307 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVS 307 (326)
T ss_pred EEEEEccCCCCccceEEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEE
Confidence 33221 345666665543211 00 0001111111 255788999976 55 4477777
Q ss_pred CCC
Q 043707 344 SDG 346 (347)
Q Consensus 344 ~DG 346 (347)
.|.
T Consensus 308 DnN 310 (326)
T PF13449_consen 308 DNN 310 (326)
T ss_pred CCC
Confidence 664
No 498
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.91 E-value=2.2e+02 Score=24.76 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=66.4
Q ss_pred EEEEecCCCcEEEEeCC--CcceeeecCCCCeeEEEEeCCCCEEEEEeCCCcEEEEecCCCCCceeeeecccccccceEE
Q 043707 135 LLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIITGDSNKIFTGHQDGKIRIWKVSRKNPSVHKRVGSLPTFKDYVK 212 (347)
Q Consensus 135 ~l~tg~~dg~I~vwd~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
+..-.-.++...+||.. +.+..+.- .+.=+.++ .+++.|+.......|+.+|..+-+......+..
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--------- 169 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--------- 169 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE---------
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE---------
Confidence 33344556777778754 33334432 34556666 355667766667788888877654332222210
Q ss_pred eccCCCeEEEEeecceeeeeecCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCEEEEEEec------------C---C
Q 043707 213 SSVNPKNYVEVRRNRNVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA------------H---D 277 (347)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~vwdl~~~~~~~~~~~------------h---~ 277 (347)
... --..++-|.|- +|.+.+=.=....|...|..+|+.+..+.. + .
T Consensus 170 -------------~g~-----pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 170 -------------NGR-----PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp -------------TTE-----E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred -------------CCE-----ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 000 11234555554 343333333355678888888887776531 1 3
Q ss_pred CcEEEEEeCCCC--EEEEE
Q 043707 278 DAINSVVAGFDS--LVFTG 294 (347)
Q Consensus 278 ~~v~~i~~~~~~--~l~s~ 294 (347)
+-.+.|++.|+. +++||
T Consensus 231 dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp S-EEEEEEETTTTEEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEe
Confidence 458999998875 66666
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=43.90 E-value=3.4e+02 Score=27.08 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.0
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEEecCC
Q 043707 161 SGLVKAIIITGDSNKIFTGHQDGKIRIWKVSR 192 (347)
Q Consensus 161 ~~~V~~l~~sp~~~~l~s~~~Dg~I~vwd~~~ 192 (347)
.+.|.+|.|.+++..+++.-..|.|.+||...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 57899999999999999999999999999943
No 500
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=41.82 E-value=1.3e+02 Score=31.94 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 043707 29 ESVIFSPRNNNNQDDGDYYSGHPKSSASSTSPRYNNNSGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWLMPPYSPN 105 (347)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 105 (347)
.|..|.++++--|+.-+| +..+.+-|++||.|.. ...+.+++..+.++....-..-...-..-.+.|+|.
T Consensus 1484 spsysptspsysptspsy--sptspsysptspsysp-----tspsysptspsysptspsysptspsysptspsyspt 1553 (1605)
T KOG0260|consen 1484 SPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSP-----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1553 (1605)
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!