Query 043708
Match_columns 254
No_of_seqs 122 out of 219
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 12:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 47.4 15 0.0005 24.2 2.7 20 14-33 7-26 (34)
2 2f93_B Sensory rhodopsin II tr 44.5 6.6 0.00023 31.6 0.9 30 10-40 60-89 (122)
3 2kse_A Sensor protein QSEC; me 32.9 41 0.0014 24.0 3.5 32 1-32 1-34 (186)
4 2ks1_B Epidermal growth factor 27.1 55 0.0019 22.1 3.1 15 19-33 21-35 (44)
5 2lx0_A Membrane fusion protein 24.2 59 0.002 21.1 2.7 20 14-33 8-27 (32)
6 3arc_I Photosystem II reaction 24.1 42 0.0014 22.7 2.0 14 16-29 10-23 (38)
7 2ksf_A Sensor protein KDPD; me 20.8 60 0.0021 24.4 2.6 26 6-31 1-26 (107)
8 2klu_A T-cell surface glycopro 19.9 54 0.0019 24.6 2.1 14 16-29 18-32 (70)
9 2cvc_A Cytochrome CC3, high-mo 19.7 21 0.00072 33.3 -0.2 31 12-42 8-38 (545)
10 1spf_A Pulmonary surfactant-as 19.6 85 0.0029 20.8 2.8 22 11-32 12-33 (35)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=47.42 E-value=15 Score=24.15 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=16.5
Q ss_pred hhhHhHHHHHHHHHHHHHhh
Q 043708 14 IVVTVVVFVGLCLVGVWMLM 33 (254)
Q Consensus 14 ~~~t~v~fv~lclvgvwm~~ 33 (254)
-|.++|.+|++.++..|..+
T Consensus 7 GTl~~V~ilg~~I~i~W~~v 26 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGV 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHH
Confidence 47788999999999999754
No 2
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=44.48 E-value=6.6 Score=31.63 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=15.3
Q ss_pred cchhhhhHhHHHHHHHHHHHHHhhcCCcccC
Q 043708 10 QKFLIVVTVVVFVGLCLVGVWMLMSSSVVPD 40 (254)
Q Consensus 10 ~~y~~~~t~v~fv~lclvgvwm~~sssv~p~ 40 (254)
+++.+.+++|++++|.+||+|+-- +-+.|-
T Consensus 60 ~~~liil~~v~lv~LgvvG~~lGR-~t~~pL 89 (122)
T 2f93_B 60 VSAILGLIILLGINLGLVAATLGG-DTAASL 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 456677788888899999998644 334443
No 3
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=32.87 E-value=41 Score=24.02 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=15.9
Q ss_pred CccccCc-cccchhhh-hHhHHHHHHHHHHHHHh
Q 043708 1 MRLMRMP-SIQKFLIV-VTVVVFVGLCLVGVWML 32 (254)
Q Consensus 1 ~~~~~~~-s~~~y~~~-~t~v~fv~lclvgvwm~ 32 (254)
|-.|++| |+..-... ++++++++++++|++..
T Consensus 1 ~~~m~~~~SLr~RL~l~~~~~~~~~~~~~~~~~~ 34 (186)
T 2kse_A 1 MGKFTQRLSLRVRLTLIFLILASVTWLLSSFVAW 34 (186)
T ss_dssp CCSTTTCSSCCCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345443 55554433 44455555556665544
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.07 E-value=55 Score=22.11 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhh
Q 043708 19 VVFVGLCLVGVWMLM 33 (254)
Q Consensus 19 v~fv~lclvgvwm~~ 33 (254)
|++|+++++++|.++
T Consensus 21 v~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 21 LLLLLVVALGIGLFM 35 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555666666664
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.17 E-value=59 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.615 Sum_probs=14.4
Q ss_pred hhhHhHHHHHHHHHHHHHhh
Q 043708 14 IVVTVVVFVGLCLVGVWMLM 33 (254)
Q Consensus 14 ~~~t~v~fv~lclvgvwm~~ 33 (254)
..+.+|+.+.+..+|.|+|-
T Consensus 8 viaglvalltflafgfwlfk 27 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777777789999873
No 6
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=24.08 E-value=42 Score=22.69 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=10.2
Q ss_pred hHhHHHHHHHHHHH
Q 043708 16 VTVVVFVGLCLVGV 29 (254)
Q Consensus 16 ~t~v~fv~lclvgv 29 (254)
+.|..||+|.++|.
T Consensus 10 ~vV~ffvsLFiFGf 23 (38)
T 3arc_I 10 IVVTFFVLLFVFGF 23 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccc
Confidence 45566788888884
No 7
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=20.82 E-value=60 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=20.9
Q ss_pred CccccchhhhhHhHHHHHHHHHHHHH
Q 043708 6 MPSIQKFLIVVTVVVFVGLCLVGVWM 31 (254)
Q Consensus 6 ~~s~~~y~~~~t~v~fv~lclvgvwm 31 (254)
||+...|+.++.+++...++++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~~~~~~~ 26 (107)
T 2ksf_A 1 MVQIQGSVVAAALSAVITLIAMQWLM 26 (107)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998888877777776554
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=19.94 E-value=54 Score=24.61 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=7.6
Q ss_pred hHhHHHHHHHHH-HH
Q 043708 16 VTVVVFVGLCLV-GV 29 (254)
Q Consensus 16 ~t~v~fv~lclv-gv 29 (254)
+.+++|.+||++ +|
T Consensus 18 ~~lll~~glcI~ccv 32 (70)
T 2klu_A 18 AGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555566655 44
No 9
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Probab=19.69 E-value=21 Score=33.27 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhcCCcccCCC
Q 043708 12 FLIVVTVVVFVGLCLVGVWMLMSSSVVPDST 42 (254)
Q Consensus 12 y~~~~t~v~fv~lclvgvwm~~sssv~p~~~ 42 (254)
+.+++.++|++++.|||+|...+....|..+
T Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 38 (545)
T 2cvc_A 8 LRWAGVLAATAIIGVGGFWSQGTTKALPEGP 38 (545)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHhhHhhhcccccCCCCc
Confidence 3456667777778889999987765555543
No 10
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=19.64 E-value=85 Score=20.84 Aligned_cols=22 Identities=41% Similarity=0.765 Sum_probs=16.0
Q ss_pred chhhhhHhHHHHHHHHHHHHHh
Q 043708 11 KFLIVVTVVVFVGLCLVGVWML 32 (254)
Q Consensus 11 ~y~~~~t~v~fv~lclvgvwm~ 32 (254)
...+.+.+|+.|.+.+||+-.|
T Consensus 12 rLlivVvVvVlvVvVivGaLLm 33 (35)
T 1spf_A 12 RLLVVVVVVVLVVVVIVGALLM 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeehhhHHHHHHHHHc
Confidence 4456667777788888998765
Done!