Query 043708
Match_columns 254
No_of_seqs 122 out of 219
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 12:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 30.3 12 0.00089 23.3 1.9 15 15-29 9-23 (35)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 28.9 20 0.0014 21.6 2.6 19 15-34 3-21 (30)
3 d1xpha1 d.169.1.1 (A:265-394) 15.0 19 0.0014 23.6 0.3 29 190-222 1-33 (130)
4 d1g31a_ b.35.1.1 (A:) GP31 co- 9.3 17 0.0013 27.2 -1.5 30 191-234 52-83 (107)
5 d1x6fa1 g.37.1.1 (A:8-82) Zinc 9.2 63 0.0046 22.6 1.6 12 183-194 14-25 (75)
6 d1oede_ f.36.1.1 (E:) Acetylch 9.0 90 0.0065 23.1 2.6 14 18-31 12-25 (260)
7 d1oedb_ f.36.1.1 (B:) Acetylch 8.3 1E+02 0.0075 22.6 2.6 14 18-31 12-25 (250)
8 d1xn7a_ a.4.5.62 (A:) Hypothet 7.5 66 0.0048 22.8 1.1 12 189-201 60-71 (78)
9 d1v54l_ f.23.6.1 (L:) Mitochon 7.4 98 0.0071 20.0 1.8 20 9-28 15-34 (46)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 6.7 1.6E+02 0.012 18.8 2.8 20 15-34 7-26 (158)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.35 E-value=12 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.518 Sum_probs=11.4
Q ss_pred hhHhHHHHHHHHHHH
Q 043708 15 VVTVVVFVGLCLVGV 29 (254)
Q Consensus 15 ~~t~v~fv~lclvgv 29 (254)
.+++..||+|.++|.
T Consensus 9 y~vV~fFv~lFiFGF 23 (35)
T d2axti1 9 YIVVTFFVLLFVFGF 23 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhh
Confidence 345667899999995
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=28.85 E-value=20 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=11.9
Q ss_pred hhHhHHHHHHHHHHHHHhhc
Q 043708 15 VVTVVVFVGLCLVGVWMLMS 34 (254)
Q Consensus 15 ~~t~v~fv~lclvgvwm~~s 34 (254)
+||-|+ +-.||+|.+.|.-
T Consensus 3 ~i~yv~-ifac~i~lfffai 21 (30)
T d2axtt1 3 TITYVF-IFACIIALFFFAI 21 (30)
T ss_dssp HHHHHH-HHHHHHHHHHHHH
T ss_pred eeehHH-HHHHHHHHHHHHH
Confidence 345444 4458888887754
No 3
>d1xpha1 d.169.1.1 (A:265-394) DC-SIGNR (DC-SIGN related receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.02 E-value=19 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=17.8
Q ss_pred eccCCC----CCCcccccCCCCCCCCCCCCCcccccc
Q 043708 190 WRYCPE----EACTSIAPLPEGYKRSIKWPKSRDRIW 222 (254)
Q Consensus 190 cRHCPe----e~~~CLVPpP~GYK~PIrWPkSRDkIW 222 (254)
||+||. -.-.|..-. ..+..|-..+..+=
T Consensus 1 c~~Cp~gw~~~~~~CY~~~----~~~~tw~~A~~~C~ 33 (130)
T d1xpha1 1 CRHCPKDWTFFQGNCYFMS----NSQRNWHDSVTACQ 33 (130)
T ss_dssp SCBCCTTCEEETTEEEEEC----SSCBCHHHHHHHHH
T ss_pred CCCCCCCCEEECCEEEEEE----CcccCHHHHHHHHh
Confidence 899994 235676543 34566766666653
No 4
>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}
Probab=9.30 E-value=17 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=21.0
Q ss_pred ccCCCCC--CcccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 043708 191 RYCPEEA--CTSIAPLPEGYKRSIKWPKSRDRIWYYNFPHTKLSEV 234 (254)
Q Consensus 191 RHCPee~--~~CLVPpP~GYK~PIrWPkSRDkIWy~NVPHTkLae~ 234 (254)
--||++. +-=+|++|.| | ++||||+.++.+
T Consensus 52 ~dVpe~~~kvG~~vlLP~G----------~----m~NVPdPr~~~G 83 (107)
T d1g31a_ 52 PDVPEGFCEVGDLTSLPVG----------Q----IRNVPHPFVALG 83 (107)
T ss_dssp TTSCTTSCCTTCEEEEEGG----------G----CEEECCHHHHTT
T ss_pred CCCCHHHhccccEEEccCC----------c----ccCCCCcHHhcc
Confidence 4577532 5567888877 2 899999996554
No 5
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=63 Score=22.61 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=10.0
Q ss_pred CccceeEeccCC
Q 043708 183 YGHRWKIWRYCP 194 (254)
Q Consensus 183 ~~y~WkLcRHCP 194 (254)
..-.|.-|+||-
T Consensus 14 ~~s~~yQC~HCd 25 (75)
T d1x6fa1 14 LQNSTYQCKHCD 25 (75)
T ss_dssp CCCSCEECSSSC
T ss_pred cCCceeeechhH
Confidence 356899999997
No 6
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.99 E-value=90 Score=23.13 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHH
Q 043708 18 VVVFVGLCLVGVWM 31 (254)
Q Consensus 18 ~v~fv~lclvgvwm 31 (254)
.+++|+|.++|.|+
T Consensus 12 ~~li~~ls~~~F~l 25 (260)
T d1oede_ 12 CVLISSLVVLVYFL 25 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheEe
Confidence 34555555555554
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.32 E-value=1e+02 Score=22.64 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q 043708 18 VVVFVGLCLVGVWM 31 (254)
Q Consensus 18 ~v~fv~lclvgvwm 31 (254)
.+++++|.++|.|+
T Consensus 12 ~~~i~~l~~~~f~~ 25 (250)
T d1oedb_ 12 CILISILAILVFYL 25 (250)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhee
Confidence 34455555555554
No 8
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=7.52 E-value=66 Score=22.77 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.1
Q ss_pred EeccCCCCCCccc
Q 043708 189 IWRYCPEEACTSI 201 (254)
Q Consensus 189 LcRHCPee~~~CL 201 (254)
-|.+||+.+- |.
T Consensus 60 sCKsCPEg~~-C~ 71 (78)
T d1xn7a_ 60 SCKSCPEGKA-CL 71 (78)
T ss_dssp SCCCCCCCCC-CC
T ss_pred CCCCCCCccc-cc
Confidence 5999997653 75
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.35 E-value=98 Score=19.98 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.1
Q ss_pred ccchhhhhHhHHHHHHHHHH
Q 043708 9 IQKFLIVVTVVVFVGLCLVG 28 (254)
Q Consensus 9 ~~~y~~~~t~v~fv~lclvg 28 (254)
..+|.+++.|++|.+.++.-
T Consensus 15 ~Nk~rLla~m~~~fGsgfa~ 34 (46)
T d1v54l_ 15 ENKWRLLAMMTLFFGSGFAA 34 (46)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccc
Confidence 45799999999999887643
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.70 E-value=1.6e+02 Score=18.82 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=11.7
Q ss_pred hhHhHHHHHHHHHHHHHhhc
Q 043708 15 VVTVVVFVGLCLVGVWMLMS 34 (254)
Q Consensus 15 ~~t~v~fv~lclvgvwm~~s 34 (254)
.|+|+|+..|..+++-.+..
T Consensus 7 lVViaIIgILaaia~P~~~~ 26 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQD 26 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666543
Done!