Query 043713
Match_columns 190
No_of_seqs 130 out of 1148
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13436 F0F1 ATP synthase sub 100.0 1.6E-47 3.5E-52 301.2 23.1 174 6-182 5-178 (179)
2 PRK13434 F0F1 ATP synthase sub 100.0 4.4E-46 9.6E-51 294.3 23.3 173 6-184 4-176 (184)
3 COG0712 AtpH F0F1-type ATP syn 100.0 9.8E-46 2.1E-50 290.1 22.1 176 4-182 3-178 (178)
4 KOG1662 Mitochondrial F1F0-ATP 100.0 2.5E-45 5.5E-50 284.5 21.8 185 1-185 26-210 (210)
5 CHL00119 atpD ATP synthase CF1 100.0 2.3E-42 5E-47 273.0 23.4 180 4-185 4-183 (184)
6 TIGR01145 ATP_synt_delta ATP s 100.0 3.5E-42 7.7E-47 269.2 22.7 172 8-181 1-172 (172)
7 PRK08474 F0F1 ATP synthase sub 100.0 4.4E-42 9.5E-47 269.7 22.0 169 7-185 4-172 (176)
8 PRK13441 F0F1 ATP synthase sub 100.0 1.4E-41 3E-46 267.7 22.8 172 6-182 4-177 (180)
9 PRK13429 F0F1 ATP synthase sub 100.0 9.8E-41 2.1E-45 262.9 24.0 176 6-183 4-179 (181)
10 PRK13430 F0F1 ATP synthase sub 100.0 7.7E-41 1.7E-45 278.4 23.8 176 4-182 95-270 (271)
11 PRK05758 F0F1 ATP synthase sub 100.0 7.2E-40 1.6E-44 257.1 23.2 173 5-182 4-176 (177)
12 PRK13428 F0F1 ATP synthase sub 100.0 1.4E-39 3E-44 287.2 23.2 174 6-181 269-443 (445)
13 PF00213 OSCP: ATP synthase de 100.0 4.8E-45 1E-49 285.1 -11.0 172 8-181 1-172 (172)
14 PRK13431 F0F1 ATP synthase sub 100.0 9.3E-30 2E-34 199.4 21.4 168 5-183 4-178 (180)
15 TIGR03321 alt_F1F0_F0_B altern 99.7 7.5E-17 1.6E-21 132.8 13.4 69 111-181 177-245 (246)
16 PRK14474 F0F1 ATP synthase sub 99.2 3.7E-10 8E-15 93.3 12.4 76 108-185 173-249 (250)
17 PRK06669 fliH flagellar assemb 98.3 9.3E-06 2E-10 68.2 10.9 104 76-186 175-279 (281)
18 PRK13430 F0F1 ATP synthase sub 97.1 0.0043 9.4E-08 51.9 9.4 62 25-87 26-87 (271)
19 PRK03963 V-type ATP synthase s 97.0 0.029 6.3E-07 44.5 12.7 66 117-185 125-192 (198)
20 PRK02292 V-type ATP synthase s 96.9 0.019 4.2E-07 45.2 11.2 105 57-185 75-181 (188)
21 TIGR03825 FliH_bacil flagellar 96.9 0.008 1.7E-07 49.8 9.0 104 78-188 147-251 (255)
22 PF02108 FliH: Flagellar assem 96.2 0.14 3.1E-06 37.1 11.3 92 76-177 36-128 (128)
23 PRK06328 type III secretion sy 96.1 0.063 1.4E-06 43.7 9.6 63 121-185 138-204 (223)
24 PRK06937 type III secretion sy 95.9 0.09 2E-06 42.0 9.4 71 109-185 129-203 (204)
25 PRK09098 type III secretion sy 95.7 0.11 2.4E-06 42.6 9.4 92 86-186 129-224 (233)
26 PRK13428 F0F1 ATP synthase sub 95.6 0.095 2.1E-06 46.9 9.2 63 25-88 198-260 (445)
27 PRK05687 fliH flagellar assemb 95.1 0.063 1.4E-06 44.1 6.1 61 121-184 182-243 (246)
28 PRK01558 V-type ATP synthase s 95.0 0.53 1.1E-05 37.5 11.1 51 129-183 137-189 (198)
29 PF01991 vATP-synt_E: ATP synt 95.0 0.062 1.3E-06 42.2 5.6 41 145-185 147-193 (198)
30 PRK13386 fliH flagellar assemb 94.5 0.12 2.6E-06 42.5 6.3 60 121-185 169-229 (236)
31 COG1317 FliH Flagellar biosynt 93.9 0.17 3.7E-06 41.5 6.1 67 121-188 164-231 (234)
32 PRK01005 V-type ATP synthase s 92.2 5.3 0.00011 32.2 12.9 81 92-182 114-197 (207)
33 COG1390 NtpE Archaeal/vacuolar 90.3 1.4 3E-05 35.1 7.0 94 76-182 89-184 (194)
34 PRK06032 fliH flagellar assemb 89.5 5 0.00011 31.9 9.7 99 76-183 96-198 (199)
35 PRK01194 V-type ATP synthase s 86.5 0.81 1.8E-05 36.1 3.3 36 150-185 142-179 (185)
36 PF14480 DNA_pol3_a_NI: DNA po 75.1 8.4 0.00018 25.3 4.7 43 105-147 32-74 (76)
37 PF07560 DUF1539: Domain of Un 67.4 20 0.00044 26.6 5.6 32 45-76 71-102 (126)
38 PHA01351 putative minor struct 64.1 30 0.00065 33.1 7.2 67 61-131 986-1062(1070)
39 PRK09019 translation initiatio 62.2 25 0.00054 25.4 5.1 36 109-144 43-78 (108)
40 PRK06824 translation initiatio 61.0 25 0.00055 25.8 5.0 36 108-143 52-87 (118)
41 PF12327 FtsZ_C: FtsZ family, 60.2 55 0.0012 22.7 7.9 54 108-161 36-89 (95)
42 TIGR01160 SUI1_MOF2 translatio 60.1 44 0.00095 24.2 6.1 50 107-163 35-84 (110)
43 COG0023 SUI1 Translation initi 55.5 27 0.00059 25.0 4.3 36 108-143 37-72 (104)
44 PRK07738 flagellar protein Fla 54.0 33 0.00071 25.1 4.6 41 119-161 41-81 (117)
45 PF08863 YolD: YolD-like prote 53.9 50 0.0011 22.2 5.5 32 118-149 20-51 (92)
46 KOG1664 Vacuolar H+-ATPase V1 52.8 55 0.0012 26.4 6.0 74 108-181 125-205 (220)
47 COG0092 RpsC Ribosomal protein 52.0 59 0.0013 26.7 6.3 43 109-152 51-100 (233)
48 cd00474 SUI1_eIF1 The SUI1/eIF 51.6 42 0.00091 22.5 4.6 36 109-144 11-46 (77)
49 TIGR01609 PF_unchar_267 Plasmo 51.5 75 0.0016 24.2 6.3 40 45-86 103-142 (146)
50 PF09688 Wx5_PLAF3D7: Protein 51.3 75 0.0016 24.2 6.4 50 29-86 94-143 (147)
51 TIGR01158 SUI1_rel translation 46.3 54 0.0012 23.2 4.7 36 108-143 35-70 (101)
52 PRK00939 translation initiatio 45.8 53 0.0011 23.2 4.6 37 107-143 33-69 (99)
53 PF03646 FlaG: FlaG protein; 45.7 51 0.0011 23.2 4.6 41 119-161 32-72 (107)
54 PF02520 DUF148: Domain of unk 44.1 1.1E+02 0.0025 21.6 8.4 42 44-85 5-46 (113)
55 PF15603 Imm45: Immunity prote 44.0 43 0.00092 22.9 3.7 28 119-147 54-81 (82)
56 PF12685 SpoIIIAH: SpoIIIAH-li 42.6 69 0.0015 25.3 5.3 84 43-138 103-187 (196)
57 cd00256 VATPase_H VATPase_H, r 42.4 2.6E+02 0.0056 25.2 9.4 81 10-90 52-134 (429)
58 PRK07451 translation initiatio 41.8 74 0.0016 23.2 4.9 35 109-143 50-84 (115)
59 PF07862 Nif11: Nitrogen fixat 41.4 77 0.0017 18.9 5.0 36 31-67 4-39 (49)
60 PF13103 TonB_2: TonB C termin 41.2 71 0.0015 21.0 4.6 36 140-177 25-65 (85)
61 PF14675 FANCI_S1: FANCI solen 38.3 1.9E+02 0.0041 23.5 7.3 88 45-132 115-212 (223)
62 PF07315 DUF1462: Protein of u 35.7 60 0.0013 22.7 3.4 28 120-148 16-43 (93)
63 PRK05904 coproporphyrinogen II 34.4 2.7E+02 0.0059 24.0 8.2 57 117-175 66-133 (353)
64 cd02413 40S_S3_KH K homology R 34.3 1.3E+02 0.0028 20.3 4.9 38 109-147 30-72 (81)
65 COG0635 HemN Coproporphyrinoge 33.8 68 0.0015 28.5 4.4 62 117-178 97-170 (416)
66 PF09822 ABC_transp_aux: ABC-t 33.6 2.4E+02 0.0051 23.0 7.4 92 72-169 11-120 (271)
67 PF02520 DUF148: Domain of unk 33.3 1.7E+02 0.0038 20.6 8.9 38 43-83 67-104 (113)
68 PF10346 Con-6: Conidiation pr 32.1 79 0.0017 18.2 3.0 23 45-67 9-31 (36)
69 PF14788 EF-hand_10: EF hand; 30.2 48 0.001 20.6 2.0 17 7-23 17-33 (51)
70 TIGR02670 cas_csx8 CRISPR-asso 29.9 1.2E+02 0.0025 27.3 5.0 66 43-108 71-145 (441)
71 PF06798 PrkA: PrkA serine pro 29.7 3.2E+02 0.007 22.6 9.8 119 5-138 34-161 (254)
72 PRK15322 invasion protein OrgB 29.7 3E+02 0.0066 22.2 14.8 99 75-185 79-178 (210)
73 PF02216 B: B domain; InterPr 29.0 1.3E+02 0.0027 18.9 3.7 27 44-70 11-37 (54)
74 PF06635 NolV: Nodulation prot 28.3 2.2E+02 0.0047 23.0 6.0 68 112-186 132-203 (207)
75 PF04918 DltD_M: DltD central 27.9 2.1E+02 0.0045 21.8 5.7 60 43-103 52-111 (163)
76 PF13174 TPR_6: Tetratricopept 27.3 49 0.0011 17.0 1.6 17 28-44 15-31 (33)
77 PRK08208 coproporphyrinogen II 26.6 3.9E+02 0.0084 23.7 8.0 77 92-168 72-164 (430)
78 cd02685 MIT_C MIT_C; domain fo 26.3 3E+02 0.0064 21.0 8.6 54 107-162 49-111 (148)
79 KOG2759 Vacuolar H+-ATPase V1 25.9 4.9E+02 0.011 23.5 8.2 98 11-110 65-167 (442)
80 cd02201 FtsZ_type1 FtsZ is a G 25.9 4E+02 0.0086 22.4 7.6 52 109-160 248-299 (304)
81 PRK05628 coproporphyrinogen II 25.1 4E+02 0.0087 23.0 7.7 83 92-174 38-137 (375)
82 PF04591 DUF596: Protein of un 24.9 1.6E+02 0.0035 19.5 3.9 27 155-181 4-30 (70)
83 PRK08898 coproporphyrinogen II 24.7 4.3E+02 0.0093 23.1 7.8 84 91-174 53-151 (394)
84 COG2026 RelE Cytotoxic transla 24.6 2.1E+02 0.0046 19.4 4.8 47 120-166 17-63 (90)
85 PF09107 SelB-wing_3: Elongati 24.4 73 0.0016 19.5 2.1 19 6-24 20-38 (50)
86 PRK09057 coproporphyrinogen II 24.3 3.4E+02 0.0074 23.6 7.1 65 110-174 56-133 (380)
87 COG3958 Transketolase, C-termi 24.2 2E+02 0.0044 24.6 5.3 57 92-157 203-259 (312)
88 PF01253 SUI1: Translation ini 23.8 1.7E+02 0.0037 19.5 4.1 52 108-165 15-66 (83)
89 PF12224 Amidoligase_2: Putati 23.6 2.8E+02 0.006 22.2 6.0 54 110-171 75-129 (252)
90 PF07319 DnaI_N: Primosomal pr 23.5 2.5E+02 0.0055 19.2 5.2 40 28-67 16-57 (94)
91 PF12170 DNA_pol3_tau_5: DNA p 23.4 1.4E+02 0.0031 22.4 3.9 84 56-150 8-93 (142)
92 PF04695 Pex14_N: Peroxisomal 23.3 84 0.0018 23.3 2.7 34 47-84 10-47 (136)
93 PF15612 WHIM1: WSTF, HB1, Itc 23.3 80 0.0017 18.8 2.1 31 53-83 15-45 (50)
94 PF08302 tRNA_lig_CPD: Fungal 23.2 4.3E+02 0.0094 21.8 8.0 93 55-168 79-174 (257)
95 PF08822 DUF1804: Protein of u 23.0 3.7E+02 0.0079 20.9 7.8 55 51-107 88-142 (165)
96 PRK00745 4-oxalocrotonate taut 22.7 1.9E+02 0.0042 17.6 4.2 23 113-135 4-26 (62)
97 PF05291 Bystin: Bystin; Inte 22.7 4.3E+02 0.0092 22.7 7.0 83 54-138 182-276 (301)
98 PF06819 Arc_PepC: Archaeal Pe 22.4 1.1E+02 0.0025 22.1 3.0 24 112-135 78-101 (110)
99 PF15513 DUF4651: Domain of un 22.4 1.1E+02 0.0023 19.9 2.6 38 125-162 3-45 (62)
100 TIGR01159 DRP1 density-regulat 21.9 1.5E+02 0.0032 23.2 3.9 53 109-167 100-152 (173)
101 PRK05660 HemN family oxidoredu 21.8 5.3E+02 0.011 22.4 7.8 67 108-174 57-136 (378)
102 TIGR00065 ftsZ cell division p 21.6 4.5E+02 0.0098 22.8 7.2 62 111-172 269-335 (349)
103 PF05823 Gp-FAR-1: Nematode fa 21.5 2E+02 0.0043 21.9 4.5 70 61-133 64-133 (154)
104 PRK08446 coproporphyrinogen II 21.2 4.7E+02 0.01 22.4 7.3 82 91-174 31-127 (350)
105 PF13348 Y_phosphatase3C: Tyro 20.9 36 0.00078 21.7 0.2 40 94-133 28-67 (68)
106 PRK01964 4-oxalocrotonate taut 20.8 2.2E+02 0.0048 17.6 4.3 24 113-136 4-27 (64)
107 PF00515 TPR_1: Tetratricopept 20.6 82 0.0018 16.5 1.7 33 13-45 1-33 (34)
108 PF14832 Tautomerase_3: Putati 20.6 1.7E+02 0.0036 21.9 3.8 24 114-137 5-29 (136)
109 PF13709 DUF4159: Domain of un 20.6 2.8E+02 0.0062 22.0 5.4 54 109-177 55-108 (207)
110 KOG3311 Ribosomal protein S18 20.4 65 0.0014 24.7 1.5 62 118-180 56-117 (152)
111 PRK08868 flagellar protein Fla 20.3 2.1E+02 0.0046 21.7 4.3 41 119-161 66-106 (144)
112 PRK13347 coproporphyrinogen II 20.1 6E+02 0.013 22.6 7.9 83 92-174 83-181 (453)
No 1
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.6e-47 Score=301.19 Aligned_cols=174 Identities=25% Similarity=0.395 Sum_probs=170.2
Q ss_pred cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713 6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA 85 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~ 85 (190)
..+|++||+|||++|.+.+.+++|.++|..+.+++.++|+|+.|+.||.+++++|.+++.++|++ ++++.+.|||++|+
T Consensus 5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll~ 83 (179)
T PRK13436 5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKILA 83 (179)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999986 79999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV 165 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v 165 (190)
+|+|+.++++|+++|.++++++.|+..|+|+||.|||++|+++|.+.|++++| ++|+++++||||||||++|++||++
T Consensus 84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g--~~v~l~~~vDpslIGGi~i~~gd~v 161 (179)
T PRK13436 84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN--KKVHLVNKIDPKLIAGIKIKVDNKV 161 (179)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC--CeEEEEeecCHHHcCceEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHc
Q 043713 166 FDMSIKSRARQMERFLR 182 (190)
Q Consensus 166 iD~Si~~~L~~l~~~l~ 182 (190)
||+|++++|++|++.|.
T Consensus 162 iD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 162 FENSIKSKLKELKKQVL 178 (179)
T ss_pred eehhHHHHHHHHHHHHh
Confidence 99999999999999875
No 2
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=4.4e-46 Score=294.25 Aligned_cols=173 Identities=31% Similarity=0.391 Sum_probs=167.1
Q ss_pred cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713 6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA 85 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~ 85 (190)
..+|+|||+|||+ +.+.+++|.++|..+.+++.++|+|+.||.||.+++++|.+++.++|++ ++++.+.|||++|+
T Consensus 4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL~ 79 (184)
T PRK13434 4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVLL 79 (184)
T ss_pred hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 5799999999999 5689999999999999999999999999999999999999999999976 79999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV 165 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v 165 (190)
+|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++| ++|.++++||||||||++|++||++
T Consensus 80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g--~~v~l~~~vDpsLIGG~ii~igd~v 157 (184)
T PRK13434 80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK--SEFILEVSEDKNLLGGFVVQFNDLK 157 (184)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC--CEeEEEeeeChHHcCceEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHccc
Q 043713 166 FDMSIKSRARQMERFLREP 184 (190)
Q Consensus 166 iD~Si~~~L~~l~~~l~~~ 184 (190)
||+|+++||++|++.|...
T Consensus 158 iD~Svk~~L~~l~~~l~~~ 176 (184)
T PRK13434 158 IEKSIASQLGEIKKAMLEK 176 (184)
T ss_pred EeHhHHHHHHHHHHHHHhc
Confidence 9999999999999999654
No 3
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=9.8e-46 Score=290.12 Aligned_cols=176 Identities=32% Similarity=0.491 Sum_probs=169.8
Q ss_pred cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713 4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV 83 (190)
Q Consensus 4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l 83 (190)
...++|++||+|||++|.|++.++.|.++|..+.++++++|+|..++.||.+++++|.+++.++|++ ..++.+.|||.+
T Consensus 3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~l 81 (178)
T COG0712 3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRL 81 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999986 445999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713 84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ 163 (190)
Q Consensus 84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d 163 (190)
|++|+|+.++++|++.|..+.++++|+..|+||||.||+++|+++|.+.|+++++ +++.+.++||||||||++|++||
T Consensus 82 l~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~--~~v~i~~~VD~sliGG~iI~vgd 159 (178)
T COG0712 82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG--KKVKLNNKIDPSLIGGLIIKVGD 159 (178)
T ss_pred HHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC--CCceEEeeeCHHHhCceEEEECC
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred EEeehhHHHHHHHHHHHHc
Q 043713 164 KVFDMSIKSRARQMERFLR 182 (190)
Q Consensus 164 ~viD~Si~~~L~~l~~~l~ 182 (190)
.+||+|++++|++|++.|.
T Consensus 160 ~viD~Svr~~L~~l~~~l~ 178 (178)
T COG0712 160 EVIDGSVRGKLKRLAKALK 178 (178)
T ss_pred EEEechHHHHHHHHHHhcC
Confidence 9999999999999998763
No 4
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=100.00 E-value=2.5e-45 Score=284.51 Aligned_cols=185 Identities=48% Similarity=0.753 Sum_probs=180.9
Q ss_pred CCccccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHH
Q 043713 1 VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHF 80 (190)
Q Consensus 1 ~~~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nf 80 (190)
|||.++++.++||.|||+.|..++++|.+..||+.+.+.++.+|.|.+|+.||.++++.|..+++++++..++.+.+.||
T Consensus 26 pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~Nf 105 (210)
T KOG1662|consen 26 PPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNF 105 (210)
T ss_pred CCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE
Q 043713 81 LVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE 160 (190)
Q Consensus 81 L~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~ 160 (190)
|.+|+||||+..+..|+.+|..++++|+|.+.|+||||.||+..+.++|+..|++.++.|+++.+++.|||||+||++++
T Consensus 106 lnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVe 185 (210)
T KOG1662|consen 106 LNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVE 185 (210)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEE
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred ECCEEeehhHHHHHHHHHHHHcccc
Q 043713 161 FGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 161 i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
+||+.+|.||++|++++.+.+.+.+
T Consensus 186 iGdK~vDmSI~tr~q~l~~ll~~~i 210 (210)
T KOG1662|consen 186 IGDKYVDMSIKTRLQKLNKLLEEPI 210 (210)
T ss_pred EcCeeEeeeHHHHHHHHHHHhhccC
Confidence 9999999999999999999888753
No 5
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=100.00 E-value=2.3e-42 Score=273.04 Aligned_cols=180 Identities=26% Similarity=0.434 Sum_probs=173.8
Q ss_pred cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713 4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV 83 (190)
Q Consensus 4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l 83 (190)
....+|++||+|||++|.+.+.+++|.+++..+.+++.++|+|+++|.||.++.++|.+++.++|++ ++++.+.|||++
T Consensus 4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~~ 82 (184)
T CHL00119 4 LVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLMV 82 (184)
T ss_pred hHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713 84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ 163 (190)
Q Consensus 84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d 163 (190)
|++|+|+.+++.|++.|.++++++.|+..+.|+||.||+++++++|.+.|++++| ++++.+.+++||+++||+++++||
T Consensus 83 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~ 161 (184)
T CHL00119 83 LVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGS 161 (184)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999997 378999999999999999999999
Q ss_pred EEeehhHHHHHHHHHHHHcccc
Q 043713 164 KVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 164 ~viD~Si~~~L~~l~~~l~~~~ 185 (190)
++||+|++++|+++++.|.+.+
T Consensus 162 ~~~D~Si~~~L~~l~~~l~~~~ 183 (184)
T CHL00119 162 KVIDTSIKGQLKQLASHLDTVL 183 (184)
T ss_pred EEEeHhHHHHHHHHHHHHHHhc
Confidence 9999999999999999998765
No 6
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=100.00 E-value=3.5e-42 Score=269.22 Aligned_cols=172 Identities=27% Similarity=0.463 Sum_probs=167.0
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713 8 GSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN 87 (190)
Q Consensus 8 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~ 87 (190)
+|++||+|||++|.+.++++.|.+++..+.++++++|+|++||.||.++.++|.++++++|++ ++++.+.|||+++++|
T Consensus 1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~ 79 (172)
T TIGR01145 1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN 79 (172)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence 589999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713 88 GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD 167 (190)
Q Consensus 88 ~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD 167 (190)
+|+.+++.|+.+|.++++++.|+..++|+||.||+++++++|.+.|++++|. ++|.+.+++||+++||+++++||++||
T Consensus 80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~-~~v~~~~~vd~~ligGi~i~~~~~~iD 158 (172)
T TIGR01145 80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGA-AKVKLNCKVDKDLIGGVIIRIGDRVID 158 (172)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCC-CeEEEEEeECHHHhCceEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999999999982 499999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 043713 168 MSIKSRARQMERFL 181 (190)
Q Consensus 168 ~Si~~~L~~l~~~l 181 (190)
+|++++|++|+++|
T Consensus 159 ~Si~~~L~~l~~~l 172 (172)
T TIGR01145 159 GSVRGQLKRLSRQL 172 (172)
T ss_pred hhHHHHHHHHHhhC
Confidence 99999999999875
No 7
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=4.4e-42 Score=269.69 Aligned_cols=169 Identities=23% Similarity=0.270 Sum_probs=162.6
Q ss_pred chhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 043713 7 GGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAE 86 (190)
Q Consensus 7 ~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~ 86 (190)
.+|+|||+|||++|. .+.+++|.+++..+.+++. +|+|+.||.||.+++++|.+++..+|++ .++.+.|||++|++
T Consensus 4 ~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~-~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vLi~ 79 (176)
T PRK08474 4 LIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFA-DEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLLAE 79 (176)
T ss_pred hhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHC-ChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence 689999999999985 6899999999999999995 7999999999999999999999999985 58999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEe
Q 043713 87 NGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVF 166 (190)
Q Consensus 87 ~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~vi 166 (190)
|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.+++++| ++|++++.+|| |||++|++||++|
T Consensus 80 n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g--~~v~l~~~vD~--IGG~ii~igd~v~ 155 (176)
T PRK08474 80 NKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN--AKIKLKQKKSD--YDGIKVEVDDLGV 155 (176)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC--CeEEEEEEEcC--CCCEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999998 79999999999 9999999999999
Q ss_pred ehhHHHHHHHHHHHHcccc
Q 043713 167 DMSIKSRARQMERFLREPI 185 (190)
Q Consensus 167 D~Si~~~L~~l~~~l~~~~ 185 (190)
|+|++ |++|+.+|.+++
T Consensus 156 D~s~~--l~~~~~~~~~~~ 172 (176)
T PRK08474 156 EVSFS--KDRLKNQLIEYI 172 (176)
T ss_pred Eeeee--HHHHHHHHHHHH
Confidence 99777 999999999886
No 8
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.4e-41 Score=267.68 Aligned_cols=172 Identities=24% Similarity=0.308 Sum_probs=163.8
Q ss_pred cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHH
Q 043713 6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQ--AKFSDVTKHFLVV 83 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~~~nfL~l 83 (190)
..+|++||+|||++|.+.+.+++|.+++..+.+++.+ ++.||.||.+|.++|.++++.+|+. .++++.+.|||++
T Consensus 4 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~---~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~v 80 (180)
T PRK13441 4 SAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES---AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNL 80 (180)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 4799999999999999999999999999999999974 5789999999999999999999852 2589999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713 84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ 163 (190)
Q Consensus 84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d 163 (190)
|++|+|+.+++.|++.|..++++++|+..|+|+||.||+++++++|.+.+++++| ++|++.++|||+||||+++++||
T Consensus 81 L~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~--~~v~l~~~vD~sliGG~~i~ig~ 158 (180)
T PRK13441 81 VFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL--RDPVFEETIDESLIAGAVVEFEG 158 (180)
T ss_pred HHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC--CcceEEeeeChHHhCcEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred EEeehhHHHHHHHHHHHHc
Q 043713 164 KVFDMSIKSRARQMERFLR 182 (190)
Q Consensus 164 ~viD~Si~~~L~~l~~~l~ 182 (190)
++||+|++++|++|++.|.
T Consensus 159 ~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 159 KRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred EEEeHhHHHHHHHHHHHHh
Confidence 9999999999999999883
No 9
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=9.8e-41 Score=262.94 Aligned_cols=176 Identities=31% Similarity=0.504 Sum_probs=170.3
Q ss_pred cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713 6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA 85 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~ 85 (190)
..+|++||+|||++|.+.+.++.|.+++..+.+++.++|+|+.++.||.++.++|.++++++|++.++++.+.|||++|+
T Consensus 4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~ 83 (181)
T PRK13429 4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA 83 (181)
T ss_pred chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999986449999999999999
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV 165 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v 165 (190)
+++|+.+++.|++.|.++++++.|+..++|+||.||+++++++|.+.|++++| +++.+.++|||+++||+++++||++
T Consensus 84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~--~~~~~~~~vd~sligG~~i~~~~~~ 161 (181)
T PRK13429 84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG--KKVELDTAVDPSLIGGVVVKIGDKV 161 (181)
T ss_pred HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC--CEEEEEeeeChhhhCceEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHcc
Q 043713 166 FDMSIKSRARQMERFLRE 183 (190)
Q Consensus 166 iD~Si~~~L~~l~~~l~~ 183 (190)
||+|++++|+++++.|..
T Consensus 162 iD~Si~~~L~~l~~~l~~ 179 (181)
T PRK13429 162 LDASVRTQLRRLKETLKK 179 (181)
T ss_pred EehhHHHHHHHHHHHHhc
Confidence 999999999999999853
No 10
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=7.7e-41 Score=278.37 Aligned_cols=176 Identities=26% Similarity=0.353 Sum_probs=170.6
Q ss_pred cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713 4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV 83 (190)
Q Consensus 4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l 83 (190)
...++..-+..|||+.|.+++++++|.++|..+..++.++|+|+.+|.||.+++++|.+++.++|++ ++++.+.||+.+
T Consensus 95 l~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~~~~~~nfl~~ 173 (271)
T PRK13430 95 LADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KVTPVTERLAEQ 173 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713 84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ 163 (190)
Q Consensus 84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d 163 (190)
+++|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++| ++|.++++|||+||||++|++||
T Consensus 174 lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g--~~V~l~~~VDpsLIGGivI~vGd 251 (271)
T PRK13430 174 AVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG--RPVHLNSEVDPSVLGGMRVQVGD 251 (271)
T ss_pred HHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC--CceEEEeeECccccCcEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred EEeehhHHHHHHHHHHHHc
Q 043713 164 KVFDMSIKSRARQMERFLR 182 (190)
Q Consensus 164 ~viD~Si~~~L~~l~~~l~ 182 (190)
++||+|++++|++|++.|.
T Consensus 252 ~viD~Sv~~rL~~L~~~L~ 270 (271)
T PRK13430 252 EVIDGSVAGRLERLRRRLA 270 (271)
T ss_pred EEEehhHHHHHHHHHHHhc
Confidence 9999999999999999885
No 11
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=7.2e-40 Score=257.15 Aligned_cols=173 Identities=31% Similarity=0.511 Sum_probs=167.7
Q ss_pred ccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713 5 LFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL 84 (190)
Q Consensus 5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll 84 (190)
...++++||+|||++|.+.+.++.|++++.. .+++.++|+|+.||.||.++.++|.++++++|++ .++.+.|||.+|
T Consensus 4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l 80 (177)
T PRK05758 4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL 80 (177)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence 4578999999999999999999999999999 9999999999999999999999999999999986 499999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCE
Q 043713 85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQK 164 (190)
Q Consensus 85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~ 164 (190)
++++|+.++++|+.+|.+++++++++..++|+||.||+++++++|.+.+++++| +++.+.+++||+++||+++++|++
T Consensus 81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~--~~v~l~~~vd~~ligG~~i~~~~~ 158 (177)
T PRK05758 81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG--RKVKLNEKVDPSLIGGVIIKVGDR 158 (177)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC--CeeEEEeeEChHHhCceEEEECCE
Confidence 999999999999999999999999999999999999999999999999999998 689999999999999999999999
Q ss_pred EeehhHHHHHHHHHHHHc
Q 043713 165 VFDMSIKSRARQMERFLR 182 (190)
Q Consensus 165 viD~Si~~~L~~l~~~l~ 182 (190)
++|+|++++|+++++.|.
T Consensus 159 ~~d~Si~~~L~~l~~~l~ 176 (177)
T PRK05758 159 VIDGSVRGKLERLKDALK 176 (177)
T ss_pred EeehhHHHHHHHHHHHhc
Confidence 999999999999999875
No 12
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.4e-39 Score=287.23 Aligned_cols=174 Identities=25% Similarity=0.335 Sum_probs=169.1
Q ss_pred cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Q 043713 6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA-KFSDVTKHFLVVL 84 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~-~~~~~~~nfL~ll 84 (190)
.++.+.||+|||++|.+++.+++|.++|..+..++.++|+|+.||.||.+|+++|.+++.++|++. ++++.+.||+.++
T Consensus 269 ~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~nfl~~l 348 (445)
T PRK13428 269 DALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVALLSQT 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999853 5899999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCE
Q 043713 85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQK 164 (190)
Q Consensus 85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~ 164 (190)
++++|+..++.|+..|.+++++++|+..|+||||.|||++|+++|.+.|+++|| ++|.++++||||||||++|++||.
T Consensus 349 v~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g--~~V~l~~~VDpsLiGGivI~vGd~ 426 (445)
T PRK13428 349 VELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG--RPVSVQLHIDPELLGGLSIAVGDE 426 (445)
T ss_pred HHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC--CceEEEeeeCchhhCceEEEECCE
Confidence 999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred EeehhHHHHHHHHHHHH
Q 043713 165 VFDMSIKSRARQMERFL 181 (190)
Q Consensus 165 viD~Si~~~L~~l~~~l 181 (190)
+||+|++++|++++++|
T Consensus 427 viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 427 VIDGTLSSRLAAAEAQL 443 (445)
T ss_pred EeehhHHHHHHHHHhhC
Confidence 99999999999999886
No 13
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=100.00 E-value=4.8e-45 Score=285.08 Aligned_cols=172 Identities=38% Similarity=0.571 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713 8 GSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN 87 (190)
Q Consensus 8 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~ 87 (190)
||++||+|||++|.+++.++.|.+++..+.+++.++|+|+.||.+|.+|.++|.+++.++|++ ++++.+.|||++|+++
T Consensus 1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~ 79 (172)
T PF00213_consen 1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN 79 (172)
T ss_dssp HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713 88 GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD 167 (190)
Q Consensus 88 ~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD 167 (190)
+|+.++++|++.|.++++++.|+..|+|+||.||+++|+++|.+.+++++| ++++.+++.|||+||||++|++||++||
T Consensus 80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~-~~~v~~~~~vD~sLigG~~i~~~~~~iD 158 (172)
T PF00213_consen 80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYG-KKKVELNYKVDPSLIGGFIIEVGDKVID 158 (172)
T ss_dssp T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTT-T-------------------------TT
T ss_pred CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHC-CCeeeEEEEEccccCcEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999999999998 2489999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 043713 168 MSIKSRARQMERFL 181 (190)
Q Consensus 168 ~Si~~~L~~l~~~l 181 (190)
+|++++|++++++|
T Consensus 159 ~Sv~~~L~~l~~~L 172 (172)
T PF00213_consen 159 ASVKSRLEQLKKEL 172 (172)
T ss_dssp TTTTTTTTTT-TTT
T ss_pred hhHHHHHHHHHhcC
Confidence 99999999998764
No 14
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.97 E-value=9.3e-30 Score=199.41 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=148.0
Q ss_pred ccchhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHh----ccCCCHHHHH
Q 043713 5 LFGGSGNYASALYIAAVKT-NALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICT----QAKFSDVTKH 79 (190)
Q Consensus 5 ~~~va~~YA~AL~~~a~e~-~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~----~~~~~~~~~n 79 (190)
+..||+|||+|||++|.++ +.+++++++|..+.+++.+ ++|+.++.||.+ ++|.+++.++++ + ..++.+.|
T Consensus 4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~N 79 (180)
T PRK13431 4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKP 79 (180)
T ss_pred cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHH
Confidence 4568999999999999999 9999999999999999987 799999999999 777777777776 4 58899999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEE
Q 043713 80 FLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVV 159 (190)
Q Consensus 80 fL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i 159 (190)
||++|++|+|+.+||.|+.. +++++.|+..|+|+||.||+++++++|.+.|++++| ++|.+...+++ .-|+++
T Consensus 80 Fl~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g--~kV~L~~~~~~--~~gik~ 152 (180)
T PRK13431 80 VMEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN--APVEIAQDTWS--KKGVSL 152 (180)
T ss_pred HHHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC--CeEEEEeeccC--CCceEE
Confidence 99999999999999999994 999999999999999999999999999999999998 78999998888 599999
Q ss_pred EECCEEeehhHH--HHHHHHHHHHcc
Q 043713 160 EFGQKVFDMSIK--SRARQMERFLRE 183 (190)
Q Consensus 160 ~i~d~viD~Si~--~~L~~l~~~l~~ 183 (190)
.++|.-++.|++ .-..++.++..|
T Consensus 153 ~v~~lg~ei~fs~~~~~~~~~~~~~~ 178 (180)
T PRK13431 153 SVSSLDLEIGFSKEDILKKIEKQVIQ 178 (180)
T ss_pred EEecCceEEEeeHHHHHHHHHHHHhh
Confidence 999876665554 444444444433
No 15
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.73 E-value=7.5e-17 Score=132.83 Aligned_cols=69 Identities=25% Similarity=0.519 Sum_probs=66.5
Q ss_pred eEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHHHHHH
Q 043713 111 VKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181 (190)
Q Consensus 111 ~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l~~~l 181 (190)
..++|+||.||+++++++|.+.|++.+| +++.+++.+||+|||||+|++||++||+|++++|++|++.+
T Consensus 177 ~~~~v~sa~~l~~~~~~~i~~~l~~~~~--~~v~~~~~vdp~ligGi~l~~g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 177 NPVLVRSAFELPEEQREQIRDTIRETLG--PEIRLRFQTEPDLIGGIELTAGGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHC--CCeeEEeeeCchhcCceEEEECCEEEechHHHHHHHHHhhc
Confidence 5599999999999999999999999998 79999999999999999999999999999999999999876
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=99.19 E-value=3.7e-10 Score=93.31 Aligned_cols=76 Identities=11% Similarity=0.176 Sum_probs=70.3
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQE-TLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~-~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
.+...+.|+||+||++++.++|.+.|.+ .+| ..+.+.+.+||++|+|+.+++||..+.||+.++|+.|.+.+.+.+
T Consensus 173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~--~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~yl~~l~~~~~~~~ 249 (250)
T PRK14474 173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI--PGTDIHFVTSPELICGIELKTEGYKIAWTLAEYLDALESQLTTVL 249 (250)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--CCCceeeecCcccccCeEEecCCceEeccHHHHHHHHHHHHHHHh
Confidence 3555699999999999999999999999 887 788999999999999999999999999999999999999988754
No 17
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=98.28 E-value=9.3e-06 Score=68.15 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-c
Q 043713 76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-L 154 (190)
Q Consensus 76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-i 154 (190)
...+++..+.++++..+++.|-+.+..+.+ ...+.|+. .|-+-+........+...++ ....+....||++ -
T Consensus 175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l~--~~~~i~I~~D~~l~~ 247 (281)
T PRK06669 175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLLD--NEEHLKIYEDDAISK 247 (281)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhcC--CCCCeEEEECCCCCC
Confidence 455888888999998888888777776533 22344443 33333344444444555555 3445556677766 3
Q ss_pred ceeEEEECCEEeehhHHHHHHHHHHHHccccc
Q 043713 155 GGLVVEFGQKVFDMSIKSRARQMERFLREPIH 186 (190)
Q Consensus 155 GGi~i~i~d~viD~Si~~~L~~l~~~l~~~~~ 186 (190)
||++|+.++-.+|+|+.+||+++++.|.+.+.
T Consensus 248 GgcvIet~~G~IDasi~tqLe~l~~~L~e~~~ 279 (281)
T PRK06669 248 GGCVIETDFGNIDARIDTQLKQLKEKLLENLK 279 (281)
T ss_pred CCeEEEcCCCeeeccHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999987653
No 18
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=97.10 E-value=0.0043 Score=51.93 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713 25 ALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN 87 (190)
Q Consensus 25 ~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~ 87 (190)
...++.+||..+.+++..+|.++..|.+|..|++.|..++..+|++ ++++.+.+++..++.+
T Consensus 26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~ 87 (271)
T PRK13430 26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ 87 (271)
T ss_pred hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence 4568889999999999999999999999999999999999999987 7999999999888876
No 19
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.97 E-value=0.029 Score=44.48 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=44.7
Q ss_pred eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713 117 SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 117 sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
++.|=+.+-.+.....+.+.+| .+.+...-+++.+|||++. -|+..+|.|+.++|+.++..+.-.+
T Consensus 125 ~~~~~D~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i 192 (198)
T PRK03963 125 RSNERTLKLIDSRLEEIRDELG---DVEIELGEPIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKI 192 (198)
T ss_pred EEccccHHHHHHHHHHHHHHhC---CeEEEECCCCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHH
Confidence 3455444444444555566665 3444332345689999998 5668899999999999999886554
No 20
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.93 E-value=0.019 Score=45.20 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHH
Q 043713 57 AETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 57 ~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
...|..++..+|.. ....+.+ +....+..++..++... +.-.+.|+ ..|-+..-.+.+ + +.
T Consensus 75 L~~r~~~l~~v~~~--a~~kL~~----~~~~~y~~~l~~li~~~--------~~~~~~i~-~~~~D~~~~~~~---~-~~ 135 (188)
T PRK02292 75 LNARKEVLEDVRNQ--VEDEIAS----LDGDKREELTKSLLDAA--------DADGVRVY-SRKDDEDLVKSL---L-SD 135 (188)
T ss_pred HHHHHHHHHHHHHH--HHHHHHh----cchhhHHHHHHHHHHhc--------CCCCeEEE-EccccHHHHHHH---H-Hh
Confidence 35667777777753 2222323 23334445555555543 22223333 334443333332 2 33
Q ss_pred hCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713 137 LGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 137 ~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
++ .+.+ .-+++++|||++. -|+.++|.|+.++|+.+...+.-.+
T Consensus 136 ~~---~~~~--~~~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i 181 (188)
T PRK02292 136 YD---GLEY--AGNIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEI 181 (188)
T ss_pred cc---cCee--CCCCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHH
Confidence 33 1223 3468899999998 5668899999999999998876443
No 21
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=96.87 E-value=0.008 Score=49.80 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-ce
Q 043713 78 KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-GG 156 (190)
Q Consensus 78 ~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-GG 156 (190)
..++.--++.++- .+..++..+...+.. .-.++|+. .|-+-+........+...++ ....+....||++- ||
T Consensus 147 eKIi~~el~~~~e-~i~~lv~~al~~l~~---~~~i~I~v-~p~d~~~v~~~~~~l~~~~~--~~~~i~i~~D~~l~~Gg 219 (255)
T TIGR03825 147 EKVIGVSLAEDKN-AFQALVRQVLSEVRE---FDEVSIYV-HPHWYERVAAQKDELQSILP--ACEHLAVYPDEKLPDGG 219 (255)
T ss_pred HHHHHHHHccCHH-HHHHHHHHHHHhccC---CCcEEEEE-CHHHHHHHHHhHHHHHhhcC--CCCceEEEeCCCCCCCC
Confidence 3344444444443 345555555544432 22344443 23333334444455666665 34567777999996 99
Q ss_pred eEEEECCEEeehhHHHHHHHHHHHHccccccC
Q 043713 157 LVVEFGQKVFDMSIKSRARQMERFLREPIHFG 188 (190)
Q Consensus 157 i~i~i~d~viD~Si~~~L~~l~~~l~~~~~~~ 188 (190)
.+|..++=.+|+|+.+||+++++.|.+.+.-|
T Consensus 220 cvIEt~~G~iDasldtqLe~l~~~l~~~l~~g 251 (255)
T TIGR03825 220 CYVETNFGRIDASVDTQLEQLKEKLLEALKEG 251 (255)
T ss_pred eEEEcCCceEEeeHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998887655
No 22
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=96.23 E-value=0.14 Score=37.12 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-c
Q 043713 76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-L 154 (190)
Q Consensus 76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-i 154 (190)
....++..-++.++-.++..|-+.... ...+.-.++|+ ++++..+.+.+.+.+... ...+....||++ -
T Consensus 36 iae~vi~~~l~~~~~~i~~~i~~al~~---~~~~~~~v~I~----v~p~d~~~l~~~~~~~~~---~~~~~l~~D~~l~~ 105 (128)
T PF02108_consen 36 IAEKVIGRELEEDPEAILNLIREALQE---LPRDEEKVTIR----VHPDDYEALEELLEDELP---ELGWELVADPSLAP 105 (128)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH---hhccCCCeEEE----ECHHHHHHHHHHHHHHHh---hcCCEEEecCCCCC
Confidence 344445444444444444333333312 22223334444 367888888888875543 233377799997 5
Q ss_pred ceeEEEECCEEeehhHHHHHHHH
Q 043713 155 GGLVVEFGQKVFDMSIKSRARQM 177 (190)
Q Consensus 155 GGi~i~i~d~viD~Si~~~L~~l 177 (190)
||++|+.++-.+|+|+.+||+++
T Consensus 106 G~c~iet~~g~iD~~i~~ql~~l 128 (128)
T PF02108_consen 106 GDCRIETEDGIIDASIETQLEAL 128 (128)
T ss_pred CCEEEEECCeeEEeCHHHHHhcC
Confidence 78999999999999999999864
No 23
>PRK06328 type III secretion system protein; Validated
Probab=96.11 E-value=0.063 Score=43.71 Aligned_cols=63 Identities=10% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHH---HHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713 121 LPPEEEKELKET---LQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 121 L~~~~~~~l~~~---l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
++++..+.+.+. +...++ ....+....||+| -||.+|+.+.-.+|+|+.+||+.+++.|.+.+
T Consensus 138 VnP~D~~~v~~~~~~l~~~~~--~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~ql~~l~~al~~~l 204 (223)
T PRK06328 138 VNPKDLAIVEKSRPELKKIVE--YADSLIISPKADVTPGGCIIETEAGIINAQLDVQLAALEKAFSTIL 204 (223)
T ss_pred ECHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCCCCCeEEEeCCceEEecHHHHHHHHHHHHHHHH
Confidence 455556665554 445555 3456777799999 57799999999999999999999999987765
No 24
>PRK06937 type III secretion system protein; Reviewed
Probab=95.88 E-value=0.09 Score=42.05 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=51.2
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHH---HhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccc
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQE---TLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREP 184 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~---~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~ 184 (190)
+...+.|+ +++++.+.+.+.+.. .++ ..-.+....||+| -||.+|+.++=.+|+|+.+||+++++.|...
T Consensus 129 ~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~--~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~tql~~l~~al~~~ 202 (204)
T PRK06937 129 NQKQVVVR----VNPDQAAAVREQIAKVLKDFP--EVGYLEVVADARLDQGGCILETEVGIIDASLDGQLEALEQAFHST 202 (204)
T ss_pred cCCeEEEE----ECHHHHHHHHHHHHHHHHhCC--CCccEEEEeCCCCCCCCeEEecCCceEEccHHHHHHHHHHHHHHH
Confidence 33444444 355666666665444 333 2234677799997 5779999999999999999999999999765
Q ss_pred c
Q 043713 185 I 185 (190)
Q Consensus 185 ~ 185 (190)
+
T Consensus 203 ~ 203 (204)
T PRK06937 203 I 203 (204)
T ss_pred h
Confidence 4
No 25
>PRK09098 type III secretion system protein HrpB; Validated
Probab=95.69 E-value=0.11 Score=42.56 Aligned_cols=92 Identities=24% Similarity=0.365 Sum_probs=61.2
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHH---HhCCCceEEEEeeeCCCCc-ceeEEEE
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQE---TLGQGKKVKVEQKVDPSIL-GGLVVEF 161 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~---~~~~~~~v~l~~~vD~sli-GGi~i~i 161 (190)
..+.-.++..+.+....++. +...++|. ++++..+.+.+.+.. ..| ....+....||+|- ||.+|+.
T Consensus 129 ~~d~~~ll~~v~~al~~~~~---~~~~v~Ir----V~P~D~~~v~~~~~~~~~~~g--~~~~l~Iv~Dp~L~~GgCviET 199 (233)
T PRK09098 129 GEDRAALFARAAQTLERVVD---GASYLTVR----VHPADLDAARAAFGAAAAAGG--RNVPVEVVGDPRLAPGACVCEW 199 (233)
T ss_pred hcCHHHHHHHHHHHHHHHhc---cCCcEEEE----ECHHHHHHHHHHHHHHHHhcC--CCcceEEEeCCCCCCCCeEEEe
Confidence 33444455555544443333 22333443 344555555554433 344 56677788999995 7799999
Q ss_pred CCEEeehhHHHHHHHHHHHHccccc
Q 043713 162 GQKVFDMSIKSRARQMERFLREPIH 186 (190)
Q Consensus 162 ~d~viD~Si~~~L~~l~~~l~~~~~ 186 (190)
++=.+|+|+.+||+.+++.|.+.+.
T Consensus 200 ~~G~IDasl~~ql~~L~~al~~~l~ 224 (233)
T PRK09098 200 DFGVFDASLDTQLRALRRALARALA 224 (233)
T ss_pred CCCeEecCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987664
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.57 E-value=0.095 Score=46.95 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcC
Q 043713 25 ALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENG 88 (190)
Q Consensus 25 ~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~ 88 (190)
.+..+-+||..+..++..++.++..|.+|.-|.+.|..++..+|++ ++++.+..++.-++...
T Consensus 198 ~~~~~~~el~~v~~~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~r 260 (445)
T PRK13428 198 ALTTLADELVSVAKLLDREPVLTKHLTEPAEDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQR 260 (445)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHcCCCCCChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCc
Confidence 4558889999999999999999999999999999999999999987 89999988888776543
No 27
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=95.08 E-value=0.063 Score=44.10 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccc
Q 043713 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREP 184 (190)
Q Consensus 121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~ 184 (190)
++++..+.+++.+..... .-.+....||+| -||.+|..++-.+|+|+.+|++++.+.|.+.
T Consensus 182 v~P~D~~~v~~~~~~~~~---~~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~r~~~l~~~l~~~ 243 (246)
T PRK05687 182 VNPDDLELVEQLLGAELS---LHGWRLLADPSLHRGGCRISAEEGDVDASLETRWQEVCRLLAPG 243 (246)
T ss_pred ECHHHHHHHHHHHhhHHH---hCCeEEEeCCCcCCCCeEEEeCCCceeccHHHHHHHHHHHHhcc
Confidence 567788888888775543 224667799999 5889999999999999999999999998654
No 28
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=95.02 E-value=0.53 Score=37.53 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcc
Q 043713 129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLRE 183 (190)
Q Consensus 129 l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~ 183 (190)
+.+.+++.++ +.|.+.. +.+++|||+|+ =|+..+|+|.-+..+.|+..|+-
T Consensus 137 ~~~~~~~~l~--~gi~i~~--~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~ 189 (198)
T PRK01558 137 LRAALGNKLK--KGIELKP--FKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNP 189 (198)
T ss_pred HHHHHHHHhc--CCeEEcc--cCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcH
Confidence 4445555665 4566664 56699999999 57899999999999999888753
No 29
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.00 E-value=0.062 Score=42.17 Aligned_cols=41 Identities=34% Similarity=0.579 Sum_probs=32.5
Q ss_pred EEeeeCC----CCcceeEEEE--CCEEeehhHHHHHHHHHHHHcccc
Q 043713 145 VEQKVDP----SILGGLVVEF--GQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 145 l~~~vD~----sliGGi~i~i--~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
+....|+ +++|||++.. |+..+|+|+.++|+.+...+...+
T Consensus 147 ~~~~~~~~~~~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i 193 (198)
T PF01991_consen 147 VEVSVDSDYLIDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEI 193 (198)
T ss_dssp EEEEE-T---BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHH
T ss_pred ceeecCccccCCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHH
Confidence 3444664 8999999997 469999999999999988876543
No 30
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=94.52 E-value=0.12 Score=42.45 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
++++..+.|.+.+.... -.+....||+| -||.+|..++-.+|+|+.+||+++...+.+.+
T Consensus 169 vnP~D~~~l~~~~~e~~-----~~~~l~~D~~l~~GgC~Iet~~g~iDa~ietRl~~~~~~l~~~l 229 (236)
T PRK13386 169 LNPEEFGRLKDLAPEKV-----QAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKEHL 229 (236)
T ss_pred ECHHHHHHHHHhhhccc-----cCeEEEeCCCcCCCCEEEEeCCceEeeCHHHHHHHHHHHHHHhc
Confidence 57778888887665432 24667799998 69999999999999999999999988887766
No 31
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.93 E-value=0.17 Score=41.48 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccccccC
Q 043713 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFG 188 (190)
Q Consensus 121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~~~~ 188 (190)
.+.++.+.+.+.+.+..+.-... +...-||++ -||.+|..+.=.+|+|+.+||.++++.+.....++
T Consensus 164 VnP~d~e~i~~~~~~~~~~~~~~-l~l~~D~~l~~GgC~IeTe~G~iDasld~ql~~L~~~~~~~~~~~ 231 (234)
T COG1317 164 VNPDDLEIIRQQLDEELSLLGWR-LELVADPALSPGGCIIETEFGIIDASLDTQLAALKRALLESLKVE 231 (234)
T ss_pred ECHHHHHHHHHHHHHHHhhcchh-eeeccCCCCCCCCeEEEecCccccccHHHHHHHHHHHHHhhhccc
Confidence 35667777777665332210122 667789998 69999999999999999999999999998766554
No 32
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=92.17 E-value=5.3 Score=32.18 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHH-HHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CCEEeeh
Q 043713 92 NLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE-LKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQKVFDM 168 (190)
Q Consensus 92 ~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~-l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d~viD~ 168 (190)
++..++..+.. ...-...+++-....+++..+. +...+.+.+- .+.|.+... .|||+|+. |+..+|+
T Consensus 114 lI~~~v~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~-----~gG~~v~~~dg~~~vd~ 183 (207)
T PRK01005 114 LIQALVQAIEA----QGISGNLTAYIGKHVSARAVNELLGKEVTKKLK-EKGVSVGSF-----VGGAQLKVEEKNWVLDL 183 (207)
T ss_pred HHHHHHHHHhh----cccccccchhhhhcCCHHHHHHHHHHHHHHHHH-HcCeEEecc-----CCceEEEecCCeeEEeC
Confidence 45556666653 1111222233333335554444 4444455552 145666642 59999999 4578999
Q ss_pred hHHHHHHHHHHHHc
Q 043713 169 SIKSRARQMERFLR 182 (190)
Q Consensus 169 Si~~~L~~l~~~l~ 182 (190)
|..+.++.+...++
T Consensus 184 t~d~i~~~~~~~l~ 197 (207)
T PRK01005 184 SSQTLLDLLTRYLQ 197 (207)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999998877764
No 33
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=90.33 E-value=1.4 Score=35.13 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcc
Q 043713 76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILG 155 (190)
Q Consensus 76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliG 155 (190)
.+..-|.-|....+... +..+..-.......-.+.|++.. -+.+- +.+.++. . .+........+.+|
T Consensus 89 ~~~e~L~~i~~~~~~~~----l~~ll~~~~~~~~~~~~iV~~~e-~d~~~---v~~~~~~-~----~~~~~~~~~~d~~G 155 (194)
T COG1390 89 AVEEKLRNIASDPEYES----LQELLIEALEKLLGGELVVYLNE-KDKAL---VEQILRE-L----KIGVELGEGIDIIG 155 (194)
T ss_pred HHHHHHHcCcCCcchHH----HHHHHHHHHHhcCCCCeEEEeCc-ccHHH---HHHHHhh-c----ccchhccccCCCcc
Confidence 45666777777777666 22222222233333334455443 23222 3333322 1 12222222367889
Q ss_pred eeEEEE--CCEEeehhHHHHHHHHHHHHc
Q 043713 156 GLVVEF--GQKVFDMSIKSRARQMERFLR 182 (190)
Q Consensus 156 Gi~i~i--~d~viD~Si~~~L~~l~~~l~ 182 (190)
|+++.. |...+|.|+.++|+.+...+.
T Consensus 156 Gvvv~~~dG~i~~dnt~~sil~~~~e~~~ 184 (194)
T COG1390 156 GVVVESRDGKIRLDNTFESILERVLEELL 184 (194)
T ss_pred eEEEEeCCCceeecCcHHHHHHHHHHHHH
Confidence 999999 558999999999999887764
No 34
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=89.50 E-value=5 Score=31.91 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHH---HHhCCCceEEEEeeeCCC
Q 043713 76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQ---ETLGQGKKVKVEQKVDPS 152 (190)
Q Consensus 76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~---~~~~~~~~v~l~~~vD~s 152 (190)
.....+.-.+.......+..++.+-...+ .+.-.+.|+.. ++..+.+.+.+. ...+ ....+....||+
T Consensus 96 iarkvi~~~l~~~p~a~v~~~v~eal~~l---~~~~~v~I~v~----P~d~~~l~~~l~~~~~~~~--~~~~~~l~~D~~ 166 (199)
T PRK06032 96 VARKIAGAALAAEPLAEITAAVRDCLRHL---VATPHLVVRVN----DALVEAARERLERLARESG--FEGRLVVLADPD 166 (199)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHh---cCCCcEEEEEC----HHHHHHHHHHHHHHHHhcC--cCccEEEeeCCC
Confidence 34455555556666544444444444333 33334555433 333444444443 3444 355677779999
Q ss_pred C-cceeEEEECCEEeehhHHHHHHHHHHHHcc
Q 043713 153 I-LGGLVVEFGQKVFDMSIKSRARQMERFLRE 183 (190)
Q Consensus 153 l-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~ 183 (190)
| -||.+|+.++-.+|.+..+...++...+..
T Consensus 167 L~~G~c~vet~~G~vd~d~~~~~~~I~~al~~ 198 (199)
T PRK06032 167 MAPGDCRLEWADGGVVRDRAAIEARIEEAVGR 198 (199)
T ss_pred CCCCCeEEEeCCCeEecCHHHHHHHHHHHhhc
Confidence 9 799999999999999999999999888764
No 35
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=86.49 E-value=0.81 Score=36.12 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713 150 DPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 150 D~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
+++++|||++. -|+..+|.|+...++++.-.++..+
T Consensus 142 ~~~~~GGvil~s~dG~I~ld~~l~~~~~~~~~~iR~~l 179 (185)
T PRK01194 142 DIDPYGGILAYSRDGKRELDLRLSSIFENILEDLKVYF 179 (185)
T ss_pred CccccccEEEEeCCCcEEehhhHHHHHHHhHHHHHHHH
Confidence 57899999999 7889999999999999888776543
No 36
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=75.07 E-value=8.4 Score=25.29 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEe
Q 043713 105 MAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQ 147 (190)
Q Consensus 105 ~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~ 147 (190)
.+.++.....+.+...++.+....+.+.|++.|+...+|.+..
T Consensus 32 ~k~~~~w~f~l~~~~~l~~~~~~~~~~~l~~~F~~ia~v~~~i 74 (76)
T PF14480_consen 32 HKKSRKWRFHLSSPHILPFEVYQKFEEKLKKQFSHIAKVELII 74 (76)
T ss_pred EccCCEEEEEEEeCCcCCHHHHHHHHHHHHHHhCCcCeEEEEE
Confidence 3556777889999999999999999999999987434565554
No 37
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=67.41 E-value=20 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHhccCCCHH
Q 043713 45 TYFQFTKDLSVPAETRVNAINEICTQAKFSDV 76 (190)
Q Consensus 45 ~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~ 76 (190)
.+-..|.+|.+|.++|.+++..+-.-..-++.
T Consensus 71 ~l~~aL~dp~Is~erK~~~l~yIaSya~~c~p 102 (126)
T PF07560_consen 71 QLIKALQDPTISKERKREALNYIASYADACPP 102 (126)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHhccCch
Confidence 45567889999999999999998654333333
No 38
>PHA01351 putative minor structural protein
Probab=64.12 E-value=30 Score=33.06 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHcCceEEEEEeec---------CCCHHHHHHHH
Q 043713 61 VNAINEICTQAKFSDVTKHFLVVLAENGRL-RNLDTIAKRFVELTMAHKGEVKVTVTSVI---------PLPPEEEKELK 130 (190)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~-~~l~~I~~~f~~l~~~~~~~~~~~V~sa~---------~L~~~~~~~l~ 130 (190)
.+++.++|....++..+.|.-.--..|+|+ +++++|++.-.-+..+++ +.+-||. .|+|++++-|+
T Consensus 986 ~q~lqkvfaeyqvp~dlq~~y~eyarnrrl~~yiseii~tinllfer~k----i~ld~a~~ylqq~kqygltdeeiqlik 1061 (1070)
T PHA01351 986 QQLLQKVFAEFQIPQELQNTYFEYARNRRVSRYVNEIITTINLLFEKHK----IDLDTAQSYLQQLKKYGLTDEEIQLIK 1061 (1070)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 478999998888999999998888999998 688999999888888776 4444442 46666666554
Q ss_pred H
Q 043713 131 E 131 (190)
Q Consensus 131 ~ 131 (190)
-
T Consensus 1062 l 1062 (1070)
T PHA01351 1062 L 1062 (1070)
T ss_pred h
Confidence 3
No 39
>PRK09019 translation initiation factor Sui1; Validated
Probab=62.17 E-value=25 Score=25.41 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=30.9
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEE
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVK 144 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~ 144 (190)
+-..+++++-.++++.+++.|...|+++++.|-.|.
T Consensus 43 kGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk 78 (108)
T PRK09019 43 KGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVK 78 (108)
T ss_pred CCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 344888899999999999999999999999776665
No 40
>PRK06824 translation initiation factor Sui1; Validated
Probab=60.97 E-value=25 Score=25.76 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=31.6
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
++...+++++-.++++.++++|...|+++++.|-.|
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv 87 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL 87 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 467788999999999999999999999999976555
No 41
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=60.24 E-value=55 Score=22.71 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=42.3
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF 161 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i 161 (190)
.+.+-+.|+....++=.+.+.+.+.+.++++.+..|.+=..+||++=+-++|.+
T Consensus 36 A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~l~d~i~Vti 89 (95)
T PF12327_consen 36 AKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEELEDEIRVTI 89 (95)
T ss_dssp -SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TTGTTEEEEEE
T ss_pred hceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCCCCCeEEEEE
Confidence 355678888888899999999999999999866689999999999877777654
No 42
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=60.13 E-value=44 Score=24.20 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=36.0
Q ss_pred HcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713 107 HKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ 163 (190)
Q Consensus 107 ~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d 163 (190)
.++...+++++-.+ .+..+++|...|+++++.|..|. -|++ ||-.|++.+
T Consensus 35 R~grK~VTiI~Gl~-~~~dlk~l~K~lKkk~~cGGsVk----~~~~--~~~~IelQG 84 (110)
T TIGR01160 35 RNGRKTLTTVQGLP-KEYDLKKIVKALKKEFACNGTVI----EDPE--MGEVIQLQG 84 (110)
T ss_pred ccCCccEEEEeccC-ChHHHHHHHHHHHHHhCCCceEE----eCCC--CCCEEEEeC
Confidence 34446777777777 68889999999999999766553 4455 556666654
No 43
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=55.46 E-value=27 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=30.0
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
++...+++++-.++.+..+++|...|+++++.|.+|
T Consensus 37 r~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv 72 (104)
T COG0023 37 RKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV 72 (104)
T ss_pred cCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee
Confidence 455678888889999999999999999999865543
No 44
>PRK07738 flagellar protein FlaG; Provisional
Probab=54.02 E-value=33 Score=25.14 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=34.5
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE
Q 043713 119 IPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF 161 (190)
Q Consensus 119 ~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i 161 (190)
.+.+++++++..+.+.+.+. .....+.+.+|++. |-++|++
T Consensus 41 k~~s~eel~~aveklN~~l~-~~~~~L~F~vdeet-~~~vVkV 81 (117)
T PRK07738 41 YEVSKEDLEEVVDGMNELLE-PSQTSLKFELHEKL-NEYYVQV 81 (117)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEE
Confidence 47888999999999988776 35678888899987 9999988
No 45
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=53.88 E-value=50 Score=22.18 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.9
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCceEEEEeee
Q 043713 118 VIPLPPEEEKELKETLQETLGQGKKVKVEQKV 149 (190)
Q Consensus 118 a~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~v 149 (190)
-..||+++++.+...|...+..+..|.+++--
T Consensus 20 kp~Lde~~leei~~~l~~a~~~~~~v~ity~~ 51 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQENQPVTITYYE 51 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 34599999999999999877656788888876
No 46
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=52.78 E-value=55 Score=26.42 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=45.8
Q ss_pred cCceEEEEEee---cCCCHHHHHHHHHHHHHHhCCCceEEEE--eeeCCCCcceeEEEECC--EEeehhHHHHHHHHHHH
Q 043713 108 KGEVKVTVTSV---IPLPPEEEKELKETLQETLGQGKKVKVE--QKVDPSILGGLVVEFGQ--KVFDMSIKSRARQMERF 180 (190)
Q Consensus 108 ~~~~~~~V~sa---~~L~~~~~~~l~~~l~~~~~~~~~v~l~--~~vD~sliGGi~i~i~d--~viD~Si~~~L~~l~~~ 180 (190)
...-.+-|++- .+|-+...+........+.|.+.++.++ .-..|+..||+++-..| ..+|.|+.+||+-+.++
T Consensus 125 L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~~e~~id~~~fL~~~~~GGVvl~s~dgkI~v~NTLesRLeli~~q 204 (220)
T KOG1664|consen 125 LLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVGVEVQIDKKDFLPPDVAGGVVLYSRDGKIKVSNTLESRLELIAEQ 204 (220)
T ss_pred hCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCCceeeechhccCCccccCCeEEEcCCCceEecCcHHHHHHHHHHH
Confidence 33444555543 2344555666666666666632222221 12346789999999855 78899999999988766
Q ss_pred H
Q 043713 181 L 181 (190)
Q Consensus 181 l 181 (190)
.
T Consensus 205 ~ 205 (220)
T KOG1664|consen 205 K 205 (220)
T ss_pred h
Confidence 4
No 47
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=52.03 E-value=59 Score=26.71 Aligned_cols=43 Identities=19% Similarity=0.415 Sum_probs=29.8
Q ss_pred CceEEEEEeecC-----CCHHHHHHHHHHHHHHhCCCceEEEE--eeeCCC
Q 043713 109 GEVKVTVTSVIP-----LPPEEEKELKETLQETLGQGKKVKVE--QKVDPS 152 (190)
Q Consensus 109 ~~~~~~V~sa~~-----L~~~~~~~l~~~l~~~~~~~~~v~l~--~~vD~s 152 (190)
..+.+.|+||.| ---..+++|.+.|++++|. .++.++ ..-+|+
T Consensus 51 ~~~~V~I~aarPg~VIGk~G~~I~~L~~~l~k~~g~-~~v~I~i~EV~~pe 100 (233)
T COG0092 51 KGTRVTIHAARPGLVIGKKGSNIEKLRKELEKLFGK-ENVQINIEEVKKPE 100 (233)
T ss_pred CceEEEEEeCCCcceEcCCCccHHHHHHHHHHHhCC-CCceEEEEEcCCCC
Confidence 455777788887 2368899999999999983 244444 334444
No 48
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=51.60 E-value=42 Score=22.52 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.9
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEE
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVK 144 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~ 144 (190)
+...+++++..+......+.+...|+++++.|..|.
T Consensus 11 ~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~ 46 (77)
T cd00474 11 GGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVK 46 (77)
T ss_pred CCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEe
Confidence 466788889899888899999999999998655554
No 49
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=51.48 E-value=75 Score=24.17 Aligned_cols=40 Identities=20% Similarity=0.050 Sum_probs=33.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 043713 45 TYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAE 86 (190)
Q Consensus 45 ~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~ 86 (190)
.+...|.+|..|..+|..++...+.- ....+.-||..+-+
T Consensus 103 ~IN~~Lnd~~~sl~dKE~ii~~~l~w--~~~Df~~FL~~Vke 142 (146)
T TIGR01609 103 HINSDLNDPSLTLVDKEYIVNIWITW--TREDFEFFLEYLKE 142 (146)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45679999999999999999999874 56788888887754
No 50
>PF09688 Wx5_PLAF3D7: Protein of unknown function (Wx5_PLAF3D7); InterPro: IPR006496 This entry represents a set of protein sequences found in Plasmodium species. An interesting feature is five perfectly conserved Trp residues.
Probab=51.28 E-value=75 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 043713 29 VESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAE 86 (190)
Q Consensus 29 v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~ 86 (190)
|+.=|+.+.. .+...|.+|..|..+|..++...+.- ....+.-||..+-+
T Consensus 94 W~kYLe~v~~------~In~~L~n~n~s~~~kE~ii~~~l~w--~~~DF~~FL~~vk~ 143 (147)
T PF09688_consen 94 WYKYLENVHN------TINKKLNNPNYSLEDKEAIINFWLEW--AKEDFEVFLNIVKE 143 (147)
T ss_pred HHHHHHHHHH------HHHHHhcCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4444444444 34578999999999999999999974 56788888887643
No 51
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=46.34 E-value=54 Score=23.21 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
++...+++++-.++.+.+.+.+...|+++++.|..+
T Consensus 35 r~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv 70 (101)
T TIGR01158 35 RKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV 70 (101)
T ss_pred CCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE
Confidence 466788999999999999999999999999865555
No 52
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=45.82 E-value=53 Score=23.24 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=31.9
Q ss_pred HcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 107 HKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 107 ~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
.++...+++++..++.+...+.+...|+++++.|..|
T Consensus 33 r~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv 69 (99)
T PRK00939 33 RRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV 69 (99)
T ss_pred cCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE
Confidence 3567789999999999999999999999999866666
No 53
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=45.69 E-value=51 Score=23.15 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE
Q 043713 119 IPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF 161 (190)
Q Consensus 119 ~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i 161 (190)
.+.+.++.++..+.|.+.+.. ....+.+.+|++. |.++|+|
T Consensus 32 ~~~~~e~l~~~v~~ln~~~~~-~~~~l~F~vde~~-~~~vVkV 72 (107)
T PF03646_consen 32 KEPSKEELEEAVEKLNEFLQA-LNTSLRFSVDEES-GRVVVKV 72 (107)
T ss_dssp ----HHHHHHHHHHHHHHHTT-SS--EEEEEEEET-TEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHh-cCCceEEEEecCC-CcEEEEE
Confidence 578889999999999998873 6778888899985 8899987
No 54
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=44.11 E-value=1.1e+02 Score=21.57 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713 44 DTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA 85 (190)
Q Consensus 44 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~ 85 (190)
.+|..++.||..+..++..-+.....+.++...+..|..-+.
T Consensus 5 ~ef~~I~~n~~lt~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~ 46 (113)
T PF02520_consen 5 KEFFQIFQNPNLTKAEIEEQLDEWAEKYGVQDQYNEFKAQVQ 46 (113)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 578889999999999999999999887777777888877553
No 55
>PF15603 Imm45: Immunity protein 45
Probab=44.00 E-value=43 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=22.7
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCceEEEEe
Q 043713 119 IPLPPEEEKELKETLQETLGQGKKVKVEQ 147 (190)
Q Consensus 119 ~~L~~~~~~~l~~~l~~~~~~~~~v~l~~ 147 (190)
.|++++++++|.+++.+++. ++.+.+.+
T Consensus 54 ~~it~~e~q~II~aI~~~~~-~~~~~v~f 81 (82)
T PF15603_consen 54 EPITIAERQKIIEAIEKYFS-ERGMTVDF 81 (82)
T ss_pred cccCHHHHHHHHHHHHHHHh-cCceEEEe
Confidence 38999999999999999987 46655543
No 56
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=42.56 E-value=69 Score=25.25 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=49.6
Q ss_pred CHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHcCceEEEEEeecCC
Q 043713 43 ADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGR-LRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r-~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L 121 (190)
-..|+.++.||..+.++|.+...++.+- .-....-..+.-|+..+- -..+ +....+.+.+.|-+.. |
T Consensus 103 ~e~L~~ii~~~~~s~~~k~~A~~~~~~l-~~~~~kE~~iE~llkakGf~dav----------v~~~~~~v~VvV~~~~-L 170 (196)
T PF12685_consen 103 IETLKEIINNENASEEEKKEAQDKLLEL-TEKMEKEMEIENLLKAKGFEDAV----------VFIEDDSVDVVVKADK-L 170 (196)
T ss_dssp HHHHHHHHT-TTS-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTS-SEEE----------EE-SSSEEEEEEE-S---
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCceE----------EEeeCCEEEEEEeCCC-C
Confidence 3578889999999999999999988752 111223334444444332 1111 1122344555555545 9
Q ss_pred CHHHHHHHHHHHHHHhC
Q 043713 122 PPEEEKELKETLQETLG 138 (190)
Q Consensus 122 ~~~~~~~l~~~l~~~~~ 138 (190)
++++..+|.+.+.+.+|
T Consensus 171 ~~~~~~~I~diV~~~~~ 187 (196)
T PF12685_consen 171 SDAEAAQIIDIVMRETG 187 (196)
T ss_dssp -HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999997
No 57
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=42.36 E-value=2.6e+02 Score=25.18 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHHc
Q 043713 10 GNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA-K-FSDVTKHFLVVLAEN 87 (190)
Q Consensus 10 ~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~-~-~~~~~~nfL~ll~~~ 87 (190)
..|+++++.+-....+.+.+..-|..+.+++..+|....++.+......+-..-+-.++... . +.....++|..++..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 68999999999988999999999999999999999887766543221112222222233321 1 223455666666655
Q ss_pred CCh
Q 043713 88 GRL 90 (190)
Q Consensus 88 ~r~ 90 (190)
+..
T Consensus 132 ~~~ 134 (429)
T cd00256 132 GLA 134 (429)
T ss_pred Ccc
Confidence 443
No 58
>PRK07451 translation initiation factor Sui1; Validated
Probab=41.82 E-value=74 Score=23.21 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=29.5
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
+-..+++++-.++.+..+++|...|+++++.|-.+
T Consensus 50 ~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv 84 (115)
T PRK07451 50 KGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV 84 (115)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE
Confidence 34678888888999999999999999999965554
No 59
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.39 E-value=77 Score=18.86 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHH
Q 043713 31 SEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEI 67 (190)
Q Consensus 31 ~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~ 67 (190)
+++..+...+.++|+|+.-+.... ++++...+...-
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~-~~~e~~~lA~~~ 39 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQ-NPEEVVALAREA 39 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcC-CHHHHHHHHHHc
Confidence 467788888889999999998866 788888776553
No 60
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=41.23 E-value=71 Score=20.97 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=24.5
Q ss_pred CceEEEEeeeCCCCccee-EEEE----CCEEeehhHHHHHHHH
Q 043713 140 GKKVKVEQKVDPSILGGL-VVEF----GQKVFDMSIKSRARQM 177 (190)
Q Consensus 140 ~~~v~l~~~vD~sliGGi-~i~i----~d~viD~Si~~~L~~l 177 (190)
+..+.+...+|++ |.+ .+++ |+..+|.++...|.+.
T Consensus 25 ~~~~~V~i~i~~d--G~v~~~~i~~sSG~~~~D~av~~ai~~~ 65 (85)
T PF13103_consen 25 GLSVTVRITIDPD--GRVISVRIVKSSGNPAFDAAVRRAIRRA 65 (85)
T ss_dssp T--EEEEEEE-TT--SBEEEEEEEE--S-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEEECCC--CCEEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 3578889999999 776 3433 8899999998888743
No 61
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=38.28 E-value=1.9e+02 Score=23.54 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=49.5
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHhcc-CC-----CHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCce----EEE
Q 043713 45 TYFQFTKDLSVPAETRVNAINEICTQA-KF-----SDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEV----KVT 114 (190)
Q Consensus 45 ~l~~~l~~p~i~~~~K~~~l~~~~~~~-~~-----~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~----~~~ 114 (190)
.+..++.+-..++++...++.+++... ++ ++.+..+|.+-..-.+...|..|.+.|.++...+.... ...
T Consensus 115 ~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~l~l~elPpLvyQLL~Lsskg~k~~vL~gl~~~F~~~~~~~~~~~~~~~~~d 194 (223)
T PF14675_consen 115 QLASMFRDVPLSKEELEFVVEKVLSMLKKLDLQELPPLVYQLLLLSSKGSKKLVLEGLIKYFNRLDKQKNESQSGSNSTD 194 (223)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhccHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhccCcccc
Confidence 455677777789999999999999764 22 33444444444444457788899999988876654322 223
Q ss_pred EEeecCCCHHHHHHHHHH
Q 043713 115 VTSVIPLPPEEEKELKET 132 (190)
Q Consensus 115 V~sa~~L~~~~~~~l~~~ 132 (190)
+-+....++++....+..
T Consensus 195 ~~~i~~~~~~elr~vEgT 212 (223)
T PF14675_consen 195 LDSIDSVSDKELRQVEGT 212 (223)
T ss_dssp -------SHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHhH
Confidence 334445666666665543
No 62
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=35.66 E-value=60 Score=22.72 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEEee
Q 043713 120 PLPPEEEKELKETLQETLGQGKKVKVEQK 148 (190)
Q Consensus 120 ~L~~~~~~~l~~~l~~~~~~~~~v~l~~~ 148 (190)
|=|.+-.+.|+++|++||+ +....+++.
T Consensus 16 PsSkeTyeWL~aal~RKyp-~~~f~~~Yi 43 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYP-DQPFEFTYI 43 (93)
T ss_dssp --HHHHHHHHHHHHHHH-T-TS-EEEEEE
T ss_pred CCchhHHHHHHHHHhCcCC-CCceEEEEE
Confidence 5668999999999999999 577777763
No 63
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.43 E-value=2.7e+02 Score=24.02 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=42.7
Q ss_pred eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcc----------ee-EEEECCEEeehhHHHHHH
Q 043713 117 SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILG----------GL-VVEFGQKVFDMSIKSRAR 175 (190)
Q Consensus 117 sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliG----------Gi-~i~i~d~viD~Si~~~L~ 175 (190)
|+.-|+.+++++|.+.+++.+. ...+++.+.+|+.+- |+ +|.+|=+..|-.+...+.
T Consensus 66 TPs~L~~~~l~~ll~~i~~~~~--~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~ 133 (353)
T PRK05904 66 TPNCLNDQLLDILLSTIKPYVD--NNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLN 133 (353)
T ss_pred ccccCCHHHHHHHHHHHHHhcC--CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 7778999999999999999876 345677779998872 43 777777777666554443
No 64
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=34.31 E-value=1.3e+02 Score=20.26 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred CceEEEEEeecCC-----CHHHHHHHHHHHHHHhCCCceEEEEe
Q 043713 109 GEVKVTVTSVIPL-----PPEEEKELKETLQETLGQGKKVKVEQ 147 (190)
Q Consensus 109 ~~~~~~V~sa~~L-----~~~~~~~l~~~l~~~~~~~~~v~l~~ 147 (190)
+...+.|+||.|= ..+.+++|.+.|++.++. ....++.
T Consensus 30 ~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~-~~~~i~v 72 (81)
T cd02413 30 TRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNF-PEGSVEL 72 (81)
T ss_pred CeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCC-CCCeEEE
Confidence 3457778889882 568899999999999984 4555544
No 65
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=33.78 E-value=68 Score=28.55 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=48.3
Q ss_pred eecCCCHHHHHHHHHHHHHHhC-CCceEEEEeeeCCCC----------ccee-EEEECCEEeehhHHHHHHHHH
Q 043713 117 SVIPLPPEEEKELKETLQETLG-QGKKVKVEQKVDPSI----------LGGL-VVEFGQKVFDMSIKSRARQME 178 (190)
Q Consensus 117 sa~~L~~~~~~~l~~~l~~~~~-~~~~v~l~~~vD~sl----------iGGi-~i~i~d~viD~Si~~~L~~l~ 178 (190)
|++-|+++|+++|.+.+.+.++ .....+++.++||.- ..|+ +|.+|=+-+|-.+...+.+..
T Consensus 97 TPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h 170 (416)
T COG0635 97 TPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIH 170 (416)
T ss_pred ccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCC
Confidence 6677999999999999999993 323489999999984 2333 777788888888887776653
No 66
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=33.60 E-value=2.4e+02 Score=23.04 Aligned_cols=92 Identities=26% Similarity=0.360 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHc-------CC-----hhhHHHHHHHHHHHHHHHcC-ceEEEEEeecCCCHHHHHHHHHHHHHHhC
Q 043713 72 KFSDVTKHFLVVLAEN-------GR-----LRNLDTIAKRFVELTMAHKG-EVKVTVTSVIPLPPEEEKELKETLQETLG 138 (190)
Q Consensus 72 ~~~~~~~nfL~ll~~~-------~r-----~~~l~~I~~~f~~l~~~~~~-~~~~~V~sa~~L~~~~~~~l~~~l~~~~~ 138 (190)
.+|+.+.++|+-|-+. .+ ..-+..-+..+.+.+.+..+ .+.++.+-+. .+.+..++ ..+.+|
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~-~~~~~~~~----~~~~~G 85 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD-ENPSEAEE----KAKEYG 85 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCC-CChHHHHH----HHHhcC
Confidence 4566777776655221 11 23344444555555555555 6666666552 22222222 223455
Q ss_pred CCceEEEEeeeC-----CCCcceeEEEECCEEeehh
Q 043713 139 QGKKVKVEQKVD-----PSILGGLVVEFGQKVFDMS 169 (190)
Q Consensus 139 ~~~~v~l~~~vD-----~sliGGi~i~i~d~viD~S 169 (190)
. ..+.+...-+ ...-+|+.++.|++.--..
T Consensus 86 i-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~ 120 (271)
T PF09822_consen 86 I-QPVQIEIVDNGKASIVTVYGGIVVEYGDREEVIP 120 (271)
T ss_pred C-CccceeecccccccceeecCeEEEEECCeEEEee
Confidence 3 3333332221 2568999999998654333
No 67
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=33.33 E-value=1.7e+02 Score=20.58 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.4
Q ss_pred CHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713 43 ADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV 83 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l 83 (190)
...+..++.|+..+..++.+-++.+... +++. .+.|..
T Consensus 67 ~~~l~~I~~n~~lT~~q~~~~I~~l~~~--~~~e-~~~l~~ 104 (113)
T PF02520_consen 67 FAKLSAILDNKSLTRQQQQEAIDALRKQ--YPEE-VDTLFF 104 (113)
T ss_pred HHHHHHHHcCcccCHHHHHHHHHHHHHH--CCHH-HHHHHH
Confidence 4578899999999999999999999985 6666 344433
No 68
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=32.15 E-value=79 Score=18.16 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHH
Q 043713 45 TYFQFTKDLSVPAETRVNAINEI 67 (190)
Q Consensus 45 ~l~~~l~~p~i~~~~K~~~l~~~ 67 (190)
.+...+.||.+|.+.|...=+.+
T Consensus 9 G~KAal~NPnvSeeaK~~A~~~L 31 (36)
T PF10346_consen 9 GYKAALHNPNVSEEAKQHAREKL 31 (36)
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 56778999999999998665443
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=30.16 E-value=48 Score=20.60 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHhC
Q 043713 7 GGSGNYASALYIAAVKT 23 (190)
Q Consensus 7 ~va~~YA~AL~~~a~e~ 23 (190)
.+...||.+||.-+...
T Consensus 17 ~~~~~yA~~LFq~~D~s 33 (51)
T PF14788_consen 17 EMDDEYARQLFQECDKS 33 (51)
T ss_dssp ---HHHHHHHHHHH-SS
T ss_pred CcCHHHHHHHHHHhccc
Confidence 46789999999998643
No 70
>TIGR02670 cas_csx8 CRISPR-associated protein Csx8 (provisional). In three genomes so far, a member of this protein appears in the midst of a CRISPR-associated (cas) gene operon, immediately upstream of a member of family TIGR01875 (CRISPR-associated autoregulator, DevR family). The genomes so far are Nocardia farcinica IFM10152, Clostridium perfringens SM101, and Clostridium tetani E88.
Probab=29.90 E-value=1.2e+02 Score=27.26 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=50.0
Q ss_pred CHHHHHhhhCCCCCHHHHH---------HHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc
Q 043713 43 ADTYFQFTKDLSVPAETRV---------NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHK 108 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~---------~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~ 108 (190)
+..+...|..+..+.++.. .+++++|++.+++..-..-+--|++.+|..++.+.+..=..++...-
T Consensus 71 h~~~e~~l~~~e~s~e~i~~i~~~~~~nti~kkvf~k~kfdg~n~~eil~~i~~nr~~~i~etfr~kk~~y~n~~ 145 (441)
T TIGR02670 71 HKKVENILKHKEFTEEIIKSINEKLSANTVMKKVFGKIKFDGTNKDEILDLIDKNRHSLIKETFRRKKDLYDNYC 145 (441)
T ss_pred HHHHHHHhcccccCHHHHHHHHHhhhhhHHHHHHHhccCCCCCCHHHHHHHHHhhHHHHHHHHHhhhhhHHHhcc
Confidence 4567778888888888754 57888888766776656666778899999999999887666665443
No 71
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=29.73 E-value=3.2e+02 Score=22.59 Aligned_cols=119 Identities=11% Similarity=0.192 Sum_probs=60.0
Q ss_pred ccchhHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHhcCHHHHHhhh-CCCCCHHHHHHHHHHH--HhccCCCHHH
Q 043713 5 LFGGSGNYASALYIAAVKT----NALEKVESEILDLVEASKKADTYFQFTK-DLSVPAETRVNAINEI--CTQAKFSDVT 77 (190)
Q Consensus 5 ~~~va~~YA~AL~~~a~e~----~~l~~v~~~l~~i~~~~~~~~~l~~~l~-~p~i~~~~K~~~l~~~--~~~~~~~~~~ 77 (190)
|.|++.||+.-.++.|-.. ..+.-+ .-|..+ ...+. +|.++.+++..++.-+ +.. ..+..+
T Consensus 34 ~~GiS~R~~~~~ls~a~~~~~~~~~i~p~-~vl~~L----------~~~l~~~~~i~~e~~~~y~~~l~~v~~-~Y~~~v 101 (254)
T PF06798_consen 34 MSGISPRFVIKILSNALSSDSEEDCINPL-DVLNEL----------EEGLKDHPSISEEERERYLEFLKSVRK-EYDERV 101 (254)
T ss_pred CCCCCHhHHHHHHHHHHHhCcccceecHH-HHHHHH----------HHHhhcccccCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6799999999887777654 222221 222222 33444 4889988877754422 111 122222
Q ss_pred HHHH-HHHHHcCChhhHHHHHHHHHHHHHHHcCce-EEEEEeecCCCHHHHHHHHHHHHHHhC
Q 043713 78 KHFL-VVLAENGRLRNLDTIAKRFVELTMAHKGEV-KVTVTSVIPLPPEEEKELKETLQETLG 138 (190)
Q Consensus 78 ~nfL-~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~-~~~V~sa~~L~~~~~~~l~~~l~~~~~ 138 (190)
.+=+ +-+. ..--......++.|..-++..-+-. .-.-.|...++.+ +.....+++..|
T Consensus 102 ~~EV~~A~~-~~~ee~~~~l~~nYl~~v~a~~~~~~~~d~~TGe~~~pd--E~~mrsIEe~ig 161 (254)
T PF06798_consen 102 EKEVQEAFY-YSYEEQIQNLFENYLDHVEAWINDEKVKDPFTGEELEPD--ERFMRSIEERIG 161 (254)
T ss_pred HHHHHHHHH-HccHHHHHHHHHHHHHHHHHHhcCCeeeCCCCcccCCcc--HHHHHHHHHhcC
Confidence 2211 1111 1222356777888888777644333 2233344444433 444444444444
No 72
>PRK15322 invasion protein OrgB; Provisional
Probab=29.67 E-value=3e+02 Score=22.22 Aligned_cols=99 Identities=9% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCC-HHHHHHHHHHHHHHhCCCceEEEEeeeCCCC
Q 043713 75 DVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLP-PEEEKELKETLQETLGQGKKVKVEQKVDPSI 153 (190)
Q Consensus 75 ~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~-~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl 153 (190)
......+....++-+ .|-.++++|..-.....+... -..|-+ .+...+|...|.+.++ -++.+.+.-++
T Consensus 79 ~~~r~lls~~Ld~pd--~LL~~le~Wl~~l~~~~~pL~----l~lP~~ak~~~~~L~~~l~e~w~--~~~~i~yhd~~-- 148 (210)
T PRK15322 79 IYARELFSAAVDHPE--TLLTVLDEWLRDFDKPEGQLF----LTLPVNAKKDHQKLMVLLMENWP--GTFNLKYHQEQ-- 148 (210)
T ss_pred HHHHHHHHHHccCHH--HHHHHHHHHHHhCccccCcee----EecChhhhhhHHHHHHHHHHhcC--CCeEEEEcCCC--
Confidence 455566666666666 667777877765555443222 233332 3455677777877776 57888888876
Q ss_pred cceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713 154 LGGLVVEFGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 154 iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
+|++..|+.+.++|-..-++...+.+..+.
T Consensus 149 --rFV~~~g~qIaEFsPq~~v~~a~~~l~~~~ 178 (210)
T PRK15322 149 --RFIMSCGDQIAEFSPEQFVETAVGVIKHHL 178 (210)
T ss_pred --ceEEEeCCchhccCHHHHHHHHHHHHHhCc
Confidence 599999999999999888888777775543
No 73
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=29.01 E-value=1.3e+02 Score=18.90 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 043713 44 DTYFQFTKDLSVPAETRVNAINEICTQ 70 (190)
Q Consensus 44 ~~l~~~l~~p~i~~~~K~~~l~~~~~~ 70 (190)
..|-.+|.+|.++.++|-.++..+-..
T Consensus 11 nAFY~vl~~~nLteeQrn~yI~~lKdd 37 (54)
T PF02216_consen 11 NAFYEVLHMPNLTEEQRNGYIQSLKDD 37 (54)
T ss_dssp HHHHHHHCSTTS-HHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCCcCHHHHHhHHHHHhhC
Confidence 356778999999999999999998664
No 74
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=28.33 E-value=2.2e+02 Score=23.01 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred EEEEEeecCCCHHHHHHHHHHHHH---HhCCCceEEEEeeeCCCCcce-eEEEECCEEeehhHHHHHHHHHHHHccccc
Q 043713 112 KVTVTSVIPLPPEEEKELKETLQE---TLGQGKKVKVEQKVDPSILGG-LVVEFGQKVFDMSIKSRARQMERFLREPIH 186 (190)
Q Consensus 112 ~~~V~sa~~L~~~~~~~l~~~l~~---~~~~~~~v~l~~~vD~sliGG-i~i~i~d~viD~Si~~~L~~l~~~l~~~~~ 186 (190)
.++|+.+ ..+-+.+...+.. ..| .. .+....||.|-+| -++..+-=++|.|+..||.-|+..+.-.-+
T Consensus 132 ~v~l~V~----P~~vd~l~~~la~~~~~~g--~~-~i~I~aDp~La~~~Cvlese~G~VdagL~aQL~ALr~a~~~~~~ 203 (207)
T PF06635_consen 132 EVTLRVA----PADVDMLRRELAALEGRPG--RP-KIRIVADPRLAAGQCVLESEFGVVDAGLDAQLRALRLAFGPLSE 203 (207)
T ss_pred eEEEEEC----HHHHHHHHHHHHhhhccCC--CC-ceeeecCCCCCCCCeeeecccchhhccHHHHHHHHHHHhcchhh
Confidence 3555543 3455566655533 333 22 6666799999765 677888889999999999999988764433
No 75
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=27.89 E-value=2.1e+02 Score=21.84 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=39.1
Q ss_pred CHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 043713 43 ADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVEL 103 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l 103 (190)
...+-.||.||.++.+.|..+...+++- .-+..+.+.++-+...+.+.-.....-.+...
T Consensus 52 ~~q~~~fl~n~~is~~~k~~~AkRlL~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (163)
T PF04918_consen 52 PLQAYNFLFNPKISDETKRYAAKRLLEL-PSDVTLKNLLKKIAKGKKLSSFDRWYLRLRYR 111 (163)
T ss_dssp HHHHHHHHHH---SSHHHHHHHHHHHHH--TT-TTHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHhh-cccHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999975 33466778888888888776666555555443
No 76
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.30 E-value=49 Score=17.00 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhcCH
Q 043713 28 KVESEILDLVEASKKAD 44 (190)
Q Consensus 28 ~v~~~l~~i~~~~~~~~ 44 (190)
.+.+....+..++.+.|
T Consensus 15 ~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 34444455555555444
No 77
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.57 E-value=3.9e+02 Score=23.67 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHcCceEEEEE----eecCCCHHHHHHHHHHHHHHhCCCc-eEEEEeeeCCCCc-----------c
Q 043713 92 NLDTIAKRFVELTMAHKGEVKVTVT----SVIPLPPEEEKELKETLQETLGQGK-KVKVEQKVDPSIL-----------G 155 (190)
Q Consensus 92 ~l~~I~~~f~~l~~~~~~~~~~~V~----sa~~L~~~~~~~l~~~l~~~~~~~~-~v~l~~~vD~sli-----------G 155 (190)
++..++++.........+....+|+ |+.-|+.+++.+|.+.+.+.++... .++++.+.+|+.+ |
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G 151 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARG 151 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcC
Confidence 4555555554333222222223443 5666899999999999998776311 3567777777653 4
Q ss_pred eeEEEECCEEeeh
Q 043713 156 GLVVEFGQKVFDM 168 (190)
Q Consensus 156 Gi~i~i~d~viD~ 168 (190)
=-.|.+|=+..|-
T Consensus 152 ~~rvslGvQS~~~ 164 (430)
T PRK08208 152 VNRLSIGVQSFHD 164 (430)
T ss_pred CCEEEEecccCCH
Confidence 3456666555544
No 78
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=26.33 E-value=3e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=34.7
Q ss_pred HcCceEEEEEeecCCC--HHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-------cceeEEEEC
Q 043713 107 HKGEVKVTVTSVIPLP--PEEEKELKETLQETLGQGKKVKVEQKVDPSI-------LGGLVVEFG 162 (190)
Q Consensus 107 ~~~~~~~~V~sa~~L~--~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-------iGGi~i~i~ 162 (190)
-.....++++|...-. ++|.+.+. .|++-+. ...|.++++-|+++ =.|++|++|
T Consensus 49 ~~~~~~i~LvT~~d~~~~~~Q~~~l~-~i~~sl~-~~gI~~~~~f~~tiHDR~I~~~nGw~Ikig 111 (148)
T cd02685 49 PCELKYIHLVTGEDEDNGKQQIEALE-EIKQSLA-SHGVEFTWEFSDTIHDREIRTDNGWIIKIG 111 (148)
T ss_pred ccceEEEEEEecCCCCCHHHHHHHHH-HHHHHHH-hCCcEEEEEECCCccceEEEecCCeEEEEC
Confidence 3457778888865432 34444443 3444443 26799999999874 579999887
No 79
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.95 E-value=4.9e+02 Score=23.51 Aligned_cols=98 Identities=7% Similarity=0.005 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHH-HHHHHHHHhccCCCHH----HHHHHHHHH
Q 043713 11 NYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR-VNAINEICTQAKFSDV----TKHFLVVLA 85 (190)
Q Consensus 11 ~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K-~~~l~~~~~~~~~~~~----~~nfL~ll~ 85 (190)
.|++.+..+-+...+-+.+...|..+.+.+.+++.....+.+......++ ...+-.+..+ .+.. ..+.+..++
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r--~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR--QDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc--CChHHHHHHHHHHHHHH
Confidence 78999999988888888999999999999999999999888877766666 4444445443 3332 445777777
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCc
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGE 110 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~ 110 (190)
..|-..+=...+.-|...+....+.
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~ 167 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQS 167 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhc
Confidence 7777766666666666666665544
No 80
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=25.93 E-value=4e+02 Score=22.41 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=41.2
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE 160 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~ 160 (190)
...-+.|+....++-++.+++.+.+++.++.+..|.+=..+||++=+-++|.
T Consensus 248 ~~~Lv~I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~~d~~l~~~v~Vt 299 (304)
T cd02201 248 KGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVT 299 (304)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCCCCeEEEE
Confidence 3355777777889999999999999999985468888889999875555543
No 81
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.08 E-value=4e+02 Score=22.96 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHH----cCceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc----------c
Q 043713 92 NLDTIAKRFVELTMAH----KGEVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL----------G 155 (190)
Q Consensus 92 ~l~~I~~~f~~l~~~~----~~~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli----------G 155 (190)
++..+.++........ ..+..+.+- |+.-|+.+++.+|.+.+++.++.....+++.+.+|+.+ .
T Consensus 38 Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~ 117 (375)
T PRK05628 38 YLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAA 117 (375)
T ss_pred HHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence 4555555554333322 223344443 56668999999999999998763234677777787753 1
Q ss_pred e-eEEEECCEEeehhHHHHH
Q 043713 156 G-LVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 156 G-i~i~i~d~viD~Si~~~L 174 (190)
| -+|.+|=+..|-.+...+
T Consensus 118 G~~rvslGvQS~~~~~L~~l 137 (375)
T PRK05628 118 GFTRVSLGMQSAAPHVLAVL 137 (375)
T ss_pred CCCEEEEecccCCHHHHHHc
Confidence 3 366666666666655444
No 82
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=24.94 E-value=1.6e+02 Score=19.51 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=20.3
Q ss_pred ceeEEEECCEEeehhHHHHHHHHHHHH
Q 043713 155 GGLVVEFGQKVFDMSIKSRARQMERFL 181 (190)
Q Consensus 155 GGi~i~i~d~viD~Si~~~L~~l~~~l 181 (190)
|=+++--++..+++|+.-+++.+++..
T Consensus 4 G~lKLa~~g~fl~Gt~eEqve~fr~~f 30 (70)
T PF04591_consen 4 GKLKLARKGEFLEGTTEEQVEMFRKSF 30 (70)
T ss_dssp TSEEEEETTEEE---HHHHHHHHHHH-
T ss_pred ceEEeccCCEEecCCHHHHHHHHHHHC
Confidence 557788899999999999999999876
No 83
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.74 E-value=4.3e+02 Score=23.07 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHH--cCceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-----------c
Q 043713 91 RNLDTIAKRFVELTMAH--KGEVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-----------G 155 (190)
Q Consensus 91 ~~l~~I~~~f~~l~~~~--~~~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-----------G 155 (190)
.++..+.++........ ..+..+.+- |+.-|+.+++.+|.+.+++.++.....+++.+.+|+-+ |
T Consensus 53 ~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~G 132 (394)
T PRK08898 53 AYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASG 132 (394)
T ss_pred HHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 36666666655332111 123333333 77779999999999999999864333577777888765 2
Q ss_pred eeEEEECCEEeehhHHHHH
Q 043713 156 GLVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 156 Gi~i~i~d~viD~Si~~~L 174 (190)
==+|.+|=+..|-.+...+
T Consensus 133 vnrisiGvQS~~~~~L~~l 151 (394)
T PRK08898 133 VNRLSIGIQSFNDAHLKAL 151 (394)
T ss_pred CCeEEEecccCCHHHHHHh
Confidence 2346666555555544433
No 84
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=24.63 E-value=2.1e+02 Score=19.44 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEe
Q 043713 120 PLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVF 166 (190)
Q Consensus 120 ~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~vi 166 (190)
.|++...+.+.+.+.+.......+......=...-|.+++++||..+
T Consensus 17 kL~~~~~~~~~~~l~~~~~~~~p~~~~k~~~~~~~~~~R~RiG~YRl 63 (90)
T COG2026 17 KLDKKIRKKIKDKLKELLENPPPIRHGKKLRKGLSGKYRLRIGDYRL 63 (90)
T ss_pred HCCHHHHHHHHHHHHHhhccCCchhhceecccCCCCeEEEEecCEEE
Confidence 37788888888888776541012222334444566888999998654
No 85
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=24.45 E-value=73 Score=19.51 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHhCC
Q 043713 6 FGGSGNYASALYIAAVKTN 24 (190)
Q Consensus 6 ~~va~~YA~AL~~~a~e~~ 24 (190)
.+++++||.++++.-...+
T Consensus 20 lg~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 20 LGLSRKYAIPLLEYLDREG 38 (50)
T ss_dssp HTS-HHHHHHHHHHHHHTT
T ss_pred HCccHHHHHHHHHHHhccC
Confidence 4789999999999876543
No 86
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.31 E-value=3.4e+02 Score=23.57 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=45.5
Q ss_pred ceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-----------ceeEEEECCEEeehhHHHHH
Q 043713 110 EVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-----------GGLVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 110 ~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-----------GGi~i~i~d~viD~Si~~~L 174 (190)
+..+.+- |+.-|+.+++++|.+.+++.++.....+++.+.+|+-+ |==+|.+|=+..|-.+...+
T Consensus 56 i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l 133 (380)
T PRK09057 56 LTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFL 133 (380)
T ss_pred cCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 3444443 77889999999999999998864344678888888644 22466677666666655444
No 87
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.17 E-value=2e+02 Score=24.64 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCccee
Q 043713 92 NLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGL 157 (190)
Q Consensus 92 ~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi 157 (190)
+..+.++.-..+-.+--....+.+.|-.|++++.+.+... +.+ .-| +..+-|++||+
T Consensus 203 mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~----~t~--~Iv---T~EeHsi~GGl 259 (312)
T COG3958 203 MVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAAR----ETG--RIV---TAEEHSIIGGL 259 (312)
T ss_pred chHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHh----hcC--cEE---EEecceeecch
Confidence 4566677666665555555566677899999887665443 444 333 44577999996
No 88
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=23.79 E-value=1.7e+02 Score=19.54 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=34.9
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV 165 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v 165 (190)
.+...+++++..++.....+.+...|+++++.+.. +. .+| -+|-.|.+.+..
T Consensus 15 ~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~s--v~--~~~--~k~~~I~iQGd~ 66 (83)
T PF01253_consen 15 RGRKFVTIVSGLELFGIDLKELAKELKKKFACGGS--VT--KDP--GKGEEIQIQGDH 66 (83)
T ss_dssp SSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EE--EE--E-T--TTSSEEEEESS-
T ss_pred cCCeEEEEEECCcccccCHHHHHHHHHHhccCceE--Ee--ecC--CCCCEEEECCcH
Confidence 46778889999998899999999999999985433 33 223 227777775533
No 89
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=23.57 E-value=2.8e+02 Score=22.21 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=33.9
Q ss_pred ceEEEEEeecCCCHHH-HHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHH
Q 043713 110 EVKVTVTSVIPLPPEE-EKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIK 171 (190)
Q Consensus 110 ~~~~~V~sa~~L~~~~-~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~ 171 (190)
...++|.|+ ||+..+ .+.|.+.++..-. .....++.+ .|+-|.+|-...++|+.
T Consensus 75 ~~~~ElvSP-~l~~~~~~~~i~~~~~~lr~-----~~~~~~~~s--cg~HVHv~~~~~~~~~~ 129 (252)
T PF12224_consen 75 WVPVELVSP-PLPYDEELEEIDKVLEALRR-----NGAIGTNDS--CGFHVHVGPEPPSFSLE 129 (252)
T ss_pred eeeEEEECC-CcCchhhHHHHHHHHHHHHH-----cCCccccCC--eeEEEEECCCCCCccHH
Confidence 568899998 465444 5555555544322 112234666 99999998877777743
No 90
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=23.46 E-value=2.5e+02 Score=19.24 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHhhh-C-CCCCHHHHHHHHHHH
Q 043713 28 KVESEILDLVEASKKADTYFQFTK-D-LSVPAETRVNAINEI 67 (190)
Q Consensus 28 ~v~~~l~~i~~~~~~~~~l~~~l~-~-p~i~~~~K~~~l~~~ 67 (190)
.+.+..+.+.+-+.++|+++.|+. + |.++.+.=..=+.++
T Consensus 16 ~~~~~~~~l~~~vl~dp~V~~Fl~~h~~eLt~~~i~rsl~kL 57 (94)
T PF07319_consen 16 NFEERYEQLKQEVLSDPEVQAFLQEHQPELTQEMIERSLSKL 57 (94)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHSTTT--HHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHcCHHHHHHHHHhHHhcCHHHHHHHHHHH
Confidence 345566666777778999999994 3 677766544444333
No 91
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=23.36 E-value=1.4e+02 Score=22.42 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecC--CCHHHHHHHHHHH
Q 043713 56 PAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP--LPPEEEKELKETL 133 (190)
Q Consensus 56 ~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~--L~~~~~~~l~~~l 133 (190)
+||-..+++...... +....++.-|--.|+..-|.. . ..+....+.+...+.++.. .++...++|.++|
T Consensus 8 tpel~~k~~~~a~~~----D~W~~~i~~L~l~gl~rqLAl---N--s~~~~~~~~v~L~L~~~q~HL~~~~a~~~L~~AL 78 (142)
T PF12170_consen 8 TPELAAKLIAEAIQQ----DPWAALIEQLPLGGLVRQLAL---N--SVKEQEDDQVCLHLRPSQKHLNNDSAQEQLQQAL 78 (142)
T ss_dssp SHHHHHHHHHHHHHH-----HHHHHHHHHT--SHHHHHHH---T--EEEEE-SSEEEEEE-GGGTTT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc----CHHHHHHHHCCCchHHHHHHH---H--HHHhccCCEEEEEEChhhHhhCCHHHHHHHHHHH
Confidence 455555555554432 234444444443444333322 1 1122344555666666543 4577899999999
Q ss_pred HHHhCCCceEEEEeeeC
Q 043713 134 QETLGQGKKVKVEQKVD 150 (190)
Q Consensus 134 ~~~~~~~~~v~l~~~vD 150 (190)
+..+| +.|.+...++
T Consensus 79 s~~~g--~~i~L~I~~~ 93 (142)
T PF12170_consen 79 SEYLG--EPIKLSIEEG 93 (142)
T ss_dssp HHHHS--S--EEEEEE-
T ss_pred HHHhC--CCEEEEEEEC
Confidence 99998 7888876554
No 92
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=23.28 E-value=84 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHhhhCCCC---CHHHHHHHHHHHHhccCCC-HHHHHHHHHH
Q 043713 47 FQFTKDLSV---PAETRVNAINEICTQAKFS-DVTKHFLVVL 84 (190)
Q Consensus 47 ~~~l~~p~i---~~~~K~~~l~~~~~~~~~~-~~~~nfL~ll 84 (190)
.+||.||.| +.++|.++|++= |++ +++...|...
T Consensus 10 ~~FL~~p~V~~sp~~~k~~FL~sK----GLt~~EI~~al~~a 47 (136)
T PF04695_consen 10 VKFLQDPKVRNSPLEKKIAFLESK----GLTEEEIDEALGRA 47 (136)
T ss_dssp HHHHCTTTCCCS-HHHHHHHHHHC----T--HHHHHHHHHHH
T ss_pred HHHhCCcccccCCHHHHHHHHHcC----CCCHHHHHHHHHhc
Confidence 469999988 678899998753 566 4455544443
No 93
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=23.25 E-value=80 Score=18.81 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713 53 LSVPAETRVNAINEICTQAKFSDVTKHFLVV 83 (190)
Q Consensus 53 p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l 83 (190)
...++++|..++..++...--++.+.+++.-
T Consensus 15 ~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~ 45 (50)
T PF15612_consen 15 YELSPEEKLEILRALCDQLLSSSSVRNEIEE 45 (50)
T ss_dssp CCS-HHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4678999999999999764334566777653
No 94
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=23.23 E-value=4.3e+02 Score=21.84 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHH
Q 043713 55 VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQ 134 (190)
Q Consensus 55 i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~ 134 (190)
++..+-.++|.++|.. . ++....|+.-|...+|+ ....++.-++..++.. .. .+.+.+...
T Consensus 79 i~~~~i~~~l~~~f~~-~-~~~~~~~~~~L~~~~Rv--------------Q~~FHVTL~H~as~k~-~~--~k~lW~~y~ 139 (257)
T PF08302_consen 79 IPTQDIKSLLEKLFED-S-PPETARFYNQLKNSRRV--------------QPEFHVTLIHRASSKE-QP--AKELWKRYT 139 (257)
T ss_pred CCHHHHHHHHHHHhcc-C-CHHHHHHHHHHHhCCCC--------------CCCCeEEEEecccCCc-Cc--chHHHHHHH
Confidence 5666777888888875 2 67778888888888886 1233444444444443 22 556666666
Q ss_pred HHhCCCceEEEE--e-eeCCCCcceeEEEECCEEeeh
Q 043713 135 ETLGQGKKVKVE--Q-KVDPSILGGLVVEFGQKVFDM 168 (190)
Q Consensus 135 ~~~~~~~~v~l~--~-~vD~sliGGi~i~i~d~viD~ 168 (190)
+.+.. ...-. . ..-....|=+.++....+||.
T Consensus 140 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~L~rlvwd~ 174 (257)
T PF08302_consen 140 KLYKS--ALKKNPKQEPTQTPTLGSCDVRLERLVWDD 174 (257)
T ss_pred HHHHh--hcccccccccccccccceEEEEEEEEEECC
Confidence 65541 11100 0 001124555666666666664
No 95
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.02 E-value=3.7e+02 Score=20.92 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=41.3
Q ss_pred hCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 043713 51 KDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAH 107 (190)
Q Consensus 51 ~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~ 107 (190)
.++.+|+++|.++|.++-. .+++.+...=+++-+-.++..--++++.+...+.++
T Consensus 88 ~~~~~~~~~k~~~LasLaD--sf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~ 142 (165)
T PF08822_consen 88 ENEDMPPQEKVELLASLAD--SFSKMVAASKRVLPETSELAVAMEVLELLAAFVQER 142 (165)
T ss_pred cccCCCHHHHHHHHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999865 477777666666677777777777777666665543
No 96
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=22.74 E-value=1.9e+02 Score=17.62 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.3
Q ss_pred EEEEeecCCCHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQE 135 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~ 135 (190)
++|......|++|+++|.+.+..
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~ 26 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITR 26 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHH
Confidence 55665666799999998887654
No 97
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=22.74 E-value=4.3e+02 Score=22.65 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCCh---hhHHHHHHHHHHHHHHHcCceEEEE---------EeecCC
Q 043713 54 SVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRL---RNLDTIAKRFVELTMAHKGEVKVTV---------TSVIPL 121 (190)
Q Consensus 54 ~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~---~~l~~I~~~f~~l~~~~~~~~~~~V---------~sa~~L 121 (190)
++|.-.=...+..+++- ..+....-||+++++++.- ..+..++..|.+..+... ...+-- .....+
T Consensus 182 sipvlhsaaaL~kl~~~-~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~-~lPVlWHq~lL~F~qrYk~di 259 (301)
T PF05291_consen 182 SIPVLHSAAALLKLAEM-EYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKR-KLPVLWHQSLLVFVQRYKNDI 259 (301)
T ss_pred CCCchhHHHHHHHHHcC-CCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCC-cccHHHHHHHHHHHHHHHHhC
Confidence 34444445556666653 5666777899999988764 455566666665544431 111000 122359
Q ss_pred CHHHHHHHHHHHHHHhC
Q 043713 122 PPEEEKELKETLQETLG 138 (190)
Q Consensus 122 ~~~~~~~l~~~l~~~~~ 138 (190)
+++|++.|.+.+..+.+
T Consensus 260 ~~eqk~~L~~ll~~~~H 276 (301)
T PF05291_consen 260 TEEQKEALLELLRKQKH 276 (301)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999998754
No 98
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=22.39 E-value=1.1e+02 Score=22.10 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEeecCCCHHHHHHHHHHHHH
Q 043713 112 KVTVTSVIPLPPEEEKELKETLQE 135 (190)
Q Consensus 112 ~~~V~sa~~L~~~~~~~l~~~l~~ 135 (190)
.+-.++|.-|+++|++.|++...+
T Consensus 78 ~i~~~~~EGLs~E~IE~Lk~Lv~e 101 (110)
T PF06819_consen 78 KIISTDAEGLSKEDIEKLKKLVEE 101 (110)
T ss_pred eEEeccccCCCHHHHHHHHHHHHc
Confidence 455678899999999999987765
No 99
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.36 E-value=1.1e+02 Score=19.86 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCceEE-----EEeeeCCCCcceeEEEEC
Q 043713 125 EEKELKETLQETLGQGKKVK-----VEQKVDPSILGGLVVEFG 162 (190)
Q Consensus 125 ~~~~l~~~l~~~~~~~~~v~-----l~~~vD~sliGGi~i~i~ 162 (190)
++++|.+.+.+.|..--+|. ....-.+.+.||+++.=|
T Consensus 3 kre~i~~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~eDg 45 (62)
T PF15513_consen 3 KREEITAEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVMEDG 45 (62)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEeCC
Confidence 44555555555443211333 334455678999998743
No 100
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=21.90 E-value=1.5e+02 Score=23.23 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=36.8
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD 167 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD 167 (190)
+...+++++-.+...-.++.+...|+++|+.|..|. ++--|+-.|.+.+.+.|
T Consensus 100 krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~------k~~~~~~eI~IQGD~~~ 152 (173)
T TIGR01159 100 KRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVS------KSVTGKEEIVIQGDVMD 152 (173)
T ss_pred CCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccc------cCCCCCCEEEecCCHHH
Confidence 556777778777777889999999999997554443 23336666666554444
No 101
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.84 E-value=5.3e+02 Score=22.38 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=45.5
Q ss_pred cCceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-----------ceeEEEECCEEeehhHHHHH
Q 043713 108 KGEVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-----------GGLVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 108 ~~~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-----------GGi~i~i~d~viD~Si~~~L 174 (190)
.++..+.+. |+.-|+.+++.+|.+.+++.++.....+++.+.+|+.+ |=-+|.+|=+..|-.+-..+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 344555555 66678899999999999998864334577777888764 43466666666665544433
No 102
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=21.58 E-value=4.5e+02 Score=22.78 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=48.8
Q ss_pred eEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE-----CCEEeehhHHH
Q 043713 111 VKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF-----GQKVFDMSIKS 172 (190)
Q Consensus 111 ~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i-----~d~viD~Si~~ 172 (190)
..+.++....++-++..++.+.+.+.++....|.+=..+||++=+-++|.+ .+..++.|++.
T Consensus 269 ~Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~G~~~d~~l~~~i~VtiIatG~~~~~~~~~~~~ 335 (349)
T TIGR00065 269 ALVHITGGADLTLLEAEEIQEIITSELDQDANIIWGAIIDPNLEDEIRVTIVATGVKSQIFFGSEKS 335 (349)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCcccCCcEEEEEEEecCCcccccCcccc
Confidence 446677777799999999999999999744677788889999877778777 66667776654
No 103
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=21.49 E-value=2e+02 Score=21.89 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHH
Q 043713 61 VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETL 133 (190)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l 133 (190)
...+..-+. ++++..+.|+.=+++.+|-- ..+...--.--.....+...-.+.+-..|+++.++.|+..+
T Consensus 64 ~~~~k~ki~--~L~peak~Fv~~li~~~~~l-~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~F 133 (154)
T PF05823_consen 64 RDKLKKKID--KLSPEAKAFVKELIAKARSL-YAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNF 133 (154)
T ss_dssp HHHHHHTTT--T--HHHHHHHHHHHHHHHHH-HHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHC
Confidence 344444444 57899999999887766632 22221111111112223334455566789998888777754
No 104
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.18 E-value=4.7e+02 Score=22.38 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHH--HcCceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-----------c
Q 043713 91 RNLDTIAKRFVELTMA--HKGEVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-----------G 155 (190)
Q Consensus 91 ~~l~~I~~~f~~l~~~--~~~~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-----------G 155 (190)
.++..++++....... ..++..+.+. |+.-|+.++..+|.+.+.+.+. ...+++.+.+|+.+ |
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~--~~~eitiE~nP~~~~~e~l~~l~~~G 108 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLS--KDCEITTEANPNSATKAWLKGMKNLG 108 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcC--CCceEEEEeCCCCCCHHHHHHHHHcC
Confidence 3555555555433211 1234444444 5566999999999999998754 45677888888753 3
Q ss_pred eeEEEECCEEeehhHHHHH
Q 043713 156 GLVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 156 Gi~i~i~d~viD~Si~~~L 174 (190)
==+|.+|=+.+|-.+...+
T Consensus 109 vnRiSiGvQS~~~~~L~~l 127 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFL 127 (350)
T ss_pred CCEEEEecccCCHHHHHHc
Confidence 2356666555655444333
No 105
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=20.92 E-value=36 Score=21.70 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHH
Q 043713 94 DTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETL 133 (190)
Q Consensus 94 ~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l 133 (190)
++-++.+.+.+++.-|.+...+...-.+|++++++|++.+
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 3444555555666667777777777788898888888754
No 106
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.85 E-value=2.2e+02 Score=17.61 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=17.8
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
++|......|.+|+++|.+.+.+.
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~ 27 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEA 27 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHH
Confidence 455555567999999998877654
No 107
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.63 E-value=82 Score=16.46 Aligned_cols=33 Identities=18% Similarity=0.027 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHH
Q 043713 13 ASALYIAAVKTNALEKVESEILDLVEASKKADT 45 (190)
Q Consensus 13 A~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~ 45 (190)
|++++..+.---....+.+.+..+.++++-+|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 344454444333333444555555555554543
No 108
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=20.59 E-value=1.7e+02 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.9
Q ss_pred EEEeec-CCCHHHHHHHHHHHHHHh
Q 043713 114 TVTSVI-PLPPEEEKELKETLQETL 137 (190)
Q Consensus 114 ~V~sa~-~L~~~~~~~l~~~l~~~~ 137 (190)
.|+.+. +||++|++.|.+.+.+.+
T Consensus 5 ~I~h~~~~lt~~~K~~LA~~IT~~y 29 (136)
T PF14832_consen 5 QIYHPPGTLTPEQKQALAEAITDIY 29 (136)
T ss_dssp EEEEETTSS-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 466666 899999999999998754
No 109
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=20.55 E-value=2.8e+02 Score=22.02 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=35.7
Q ss_pred CceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHH
Q 043713 109 GEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQM 177 (190)
Q Consensus 109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l 177 (190)
-.+......+.++|++++++|++-|.+ | --+-++.. | -++.-.|.|++..++++
T Consensus 55 P~ly~~g~~~~~~s~~e~~~Lr~Yl~~--G--Gfl~~D~~-~----------~~~~~~~~~~r~~~~~v 108 (207)
T PF13709_consen 55 PFLYWPGHGDFPLSDEEIANLRRYLEN--G--GFLLFDDR-D----------CGSAGFDASFRRLMKRV 108 (207)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHc--C--CEEEEECC-C----------cccccccHHHHHHHHHh
Confidence 344556666779999999999998876 4 34444432 1 23466788887666554
No 110
>KOG3311 consensus Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=65 Score=24.66 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=48.2
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHHHHH
Q 043713 118 VIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180 (190)
Q Consensus 118 a~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l~~~ 180 (190)
+-+|+++|+..+.+.++..-.. +...+.-.++..++-|-.-..-.-..|.=++..++++++.
T Consensus 56 ~gelt~~qi~~i~~i~~d~~~~-~~~~~~l~rq~~~~dG~~~~l~~~~ld~r~r~~ieRlkki 117 (152)
T KOG3311|consen 56 AGELTEEQILRILQILNDPRQY-KIPDWFLNRQKDIIDGKVNHLLGNGLDTRLRADIERLKKI 117 (152)
T ss_pred hccccHHHHHHHHHHhcCHHHh-cCchHHHHhhcccccCccccccchhhhhHHHHHHHHHhhh
Confidence 6689999999999999833221 4667777788899999966666677888888888888654
No 111
>PRK08868 flagellar protein FlaG; Provisional
Probab=20.29 E-value=2.1e+02 Score=21.74 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE
Q 043713 119 IPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF 161 (190)
Q Consensus 119 ~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i 161 (190)
.+++++++++..+.|.+.... ....+.+.+|++. |-++|+|
T Consensus 66 ~e~~~eel~~aVeklNe~~~~-~n~~L~F~vdeet-gr~VVkV 106 (144)
T PRK08868 66 QELNREELEKMVEQMNEFVKS-INKGLSFRVDEES-GRDVVTI 106 (144)
T ss_pred cccCHHHHHHHHHHHHHHHHh-hcCceEEEEecCC-CCEEEEE
Confidence 457888888888888877652 5667888899884 7777776
No 112
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.13 E-value=6e+02 Score=22.63 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHH---cCceEEEEE--eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-----------c
Q 043713 92 NLDTIAKRFVELTMAH---KGEVKVTVT--SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-----------G 155 (190)
Q Consensus 92 ~l~~I~~~f~~l~~~~---~~~~~~~V~--sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-----------G 155 (190)
++..++++........ .++..+.+. |+.-|+.+++.+|.+.+.+.++.....++..++||..+ |
T Consensus 83 y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G 162 (453)
T PRK13347 83 YVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALG 162 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcC
Confidence 4556666655433322 123333333 44558899999999999998764334677777888765 3
Q ss_pred eeEEEECCEEeehhHHHHH
Q 043713 156 GLVVEFGQKVFDMSIKSRA 174 (190)
Q Consensus 156 Gi~i~i~d~viD~Si~~~L 174 (190)
=-++.+|=+-.|-.+...+
T Consensus 163 ~~rvsiGvQS~~~~vl~~l 181 (453)
T PRK13347 163 FNRASFGVQDFDPQVQKAI 181 (453)
T ss_pred CCEEEECCCCCCHHHHHHh
Confidence 3477777666655444333
Done!