Query 043713
Match_columns 190
No_of_seqs 130 out of 1148
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wss_S ATP synthase subunit O, 100.0 1.1E-48 3.7E-53 309.5 -7.1 184 1-185 7-190 (190)
2 1abv_A Delta subunit of the F1 100.0 2.2E-31 7.5E-36 198.9 13.3 131 5-138 3-133 (134)
3 2dm9_A V-type ATP synthase sub 97.0 0.0018 6.1E-08 49.6 7.1 92 86-185 99-192 (198)
4 3v6i_A V-type ATP synthase sub 96.3 0.086 2.9E-06 40.3 12.0 106 59-186 74-182 (187)
5 3lg8_A A-type ATP synthase sub 95.2 0.0043 1.5E-07 43.7 0.5 59 126-186 42-102 (106)
6 4efa_E V-type proton ATPase su 93.6 0.35 1.2E-05 38.2 8.5 73 107-182 131-215 (233)
7 3tuf_A Stage III sporulation p 73.5 3.9 0.00013 31.6 4.2 94 43-148 100-194 (197)
8 2xzm_F EIF1; ribosome, transla 60.5 17 0.00057 24.8 5.0 51 108-165 27-77 (101)
9 2npb_A Selenoprotein W; struct 52.9 27 0.00092 23.5 5.0 41 124-166 17-57 (96)
10 2hc5_A ORF 99, hypothetical pr 52.8 23 0.00078 24.8 4.7 42 118-161 32-73 (117)
11 4a5z_A MITD1, MIT domain-conta 52.8 67 0.0023 23.8 7.5 53 108-162 66-128 (163)
12 1l6x_B Minimized B-domain of p 48.5 25 0.00085 19.1 3.3 26 44-69 7-32 (34)
13 1r4g_A RNA polymerase alpha su 42.8 51 0.0017 19.4 5.7 39 45-84 6-44 (53)
14 3abf_A 4-oxalocrotonate tautom 41.8 47 0.0016 19.5 4.5 25 112-136 3-27 (64)
15 3ff5_A PEX14P, peroxisomal bio 41.8 21 0.00071 21.6 2.6 20 47-66 17-39 (54)
16 2aya_A DNA polymerase III subu 37.7 44 0.0015 23.4 4.4 42 108-151 52-95 (128)
17 3m20_A 4-oxalocrotonate tautom 36.8 52 0.0018 19.5 4.1 23 113-136 3-25 (62)
18 1zda_A Mini protein A domain, 35.7 31 0.0011 19.2 2.5 25 43-67 11-35 (38)
19 2w84_A Peroxisomal membrane pr 33.0 30 0.001 22.0 2.5 20 47-66 22-44 (70)
20 1xg8_A Hypothetical protein SA 31.3 51 0.0017 22.8 3.5 28 120-148 26-53 (111)
21 2x4k_A 4-oxalocrotonate tautom 29.2 84 0.0029 17.9 4.5 25 112-136 5-29 (63)
22 3nrh_A Uncharacterized protein 28.3 1.7E+02 0.0057 22.1 6.4 90 87-184 33-126 (182)
23 1wh9_A 40S ribosomal protein S 28.3 1.2E+02 0.004 20.0 5.0 45 109-153 35-87 (92)
24 2if1_A EIF1, SUI1; translation 28.1 31 0.0011 24.5 2.1 53 108-167 52-104 (126)
25 3lpz_A GET4 (YOR164C homolog); 27.6 2.6E+02 0.0088 23.0 8.5 30 77-106 247-276 (336)
26 2opa_A Probable tautomerase YW 26.3 98 0.0033 17.7 4.5 24 113-136 3-26 (61)
27 1d1r_A Hypothetical 11.4 KD pr 26.2 41 0.0014 23.5 2.5 33 111-143 45-77 (116)
28 1otf_A 4-oxalocrotonate tautom 25.9 1E+02 0.0034 17.7 4.5 24 113-136 3-26 (62)
29 3gx8_A Monothiol glutaredoxin- 24.0 1.4E+02 0.0047 20.3 5.0 75 74-157 2-88 (121)
30 2ymb_A MITD1, MIT domain-conta 23.0 2.6E+02 0.0088 22.2 6.9 55 107-162 153-216 (257)
31 3mb2_A 4-oxalocrotonate tautom 22.9 1.3E+02 0.0046 18.1 4.5 24 113-136 4-27 (72)
32 2ogh_A Eukaryotic translation 22.2 93 0.0032 21.2 3.7 52 108-166 34-85 (108)
33 4aan_A Cytochrome C551 peroxid 20.8 1.2E+02 0.0041 25.0 4.7 41 86-138 278-318 (341)
34 3m21_A Probable tautomerase HP 20.6 1.4E+02 0.0049 17.6 4.1 24 113-136 3-29 (67)
35 2xzm_C KH domain containing pr 20.5 1.8E+02 0.0063 22.9 5.5 31 108-138 46-81 (243)
36 3i38_A Putative chaperone DNAJ 20.3 1E+02 0.0035 20.8 3.5 28 108-135 67-96 (109)
No 1
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=100.00 E-value=1.1e-48 Score=309.46 Aligned_cols=184 Identities=36% Similarity=0.582 Sum_probs=154.0
Q ss_pred CCccccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHH
Q 043713 1 VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHF 80 (190)
Q Consensus 1 ~~~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nf 80 (190)
||+.++++|+|||+|||++|.+++.++.|.++|..+.+++. +|+|+.+|.||.++.++|.+++.++|++.++++.+.||
T Consensus 7 ~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nf 85 (190)
T 2wss_S 7 PPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNL 85 (190)
T ss_dssp CTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHH
T ss_pred CchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHH
Confidence 68889999999999999999999999999999999999999 99999999999999999999999999853589999999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE
Q 043713 81 LVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE 160 (190)
Q Consensus 81 L~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~ 160 (190)
|++|++|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++|.|++|.++++|||+||||++|+
T Consensus 86 l~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~ 165 (190)
T 2wss_S 86 INLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVR 165 (190)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------
T ss_pred HHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999973368999999999999999999
Q ss_pred ECCEEeehhHHHHHHHHHHHHcccc
Q 043713 161 FGQKVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 161 i~d~viD~Si~~~L~~l~~~l~~~~ 185 (190)
+||++||+|++++|++|++.|.+.+
T Consensus 166 vgd~viD~Sv~~~L~~l~~~L~~~~ 190 (190)
T 2wss_S 166 IGEKYVDMSAKTKIQKLSRAMREIL 190 (190)
T ss_dssp ---CCTTTTTTTTTTTTCTTTTTC-
T ss_pred ECCEEEehhHHHHHHHHHHHHhhcC
Confidence 9999999999999999999987753
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.97 E-value=2.2e-31 Score=198.87 Aligned_cols=131 Identities=20% Similarity=0.381 Sum_probs=98.0
Q ss_pred ccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713 5 LFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL 84 (190)
Q Consensus 5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll 84 (190)
+.++|+|||+|||++|.+++.++.|. ++..+...+.++|+|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|
T Consensus 3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll 79 (134)
T 1abv_A 3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM 79 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 56899999999999999999999995 77777888888999999999 999999999999999986 7999999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhC
Q 043713 85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLG 138 (190)
Q Consensus 85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~ 138 (190)
++|+|+.++++|++.|.+++++++|++.|+|+||.|||++|+++|.+.|++++|
T Consensus 80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g 133 (134)
T 1abv_A 80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS 133 (134)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999986
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.01 E-value=0.0018 Score=49.65 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=57.2
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CC
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQ 163 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d 163 (190)
......++..++......+ +...+.|+ ..|-+.+..+.+...+.+.++ +..+.+ .-++...||++|.. |+
T Consensus 99 ~~~y~~~l~~li~e~~~~~----~~~~v~i~-v~~~D~~~v~~~~~~~~~~~~-~~~l~i--~~~~~~~GG~~i~~~~G~ 170 (198)
T 2dm9_A 99 EDEYFESVKALLKEAIKEL----NEKKVRVM-SNEKTLGLIASRIEEIKSELG-DVSIEL--GETVDTMGGVIVETEDGR 170 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TCSEEEEE-CCHHHHHHHHHTHHHHHHHCT-TCEEEE--CCCCCCSSEEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCCEEEE-ECHhHHHHHHHHHHHHHHHhc-CceEEE--CCCCCccCceEEEeCCCC
Confidence 3334455555555555443 33334443 334444455555555666664 234444 22567889999999 66
Q ss_pred EEeehhHHHHHHHHHHHHcccc
Q 043713 164 KVFDMSIKSRARQMERFLREPI 185 (190)
Q Consensus 164 ~viD~Si~~~L~~l~~~l~~~~ 185 (190)
..+|+|+.++|+.+...+...+
T Consensus 171 i~id~tl~~rl~~~~~~l~~~i 192 (198)
T 2dm9_A 171 IRIDNTFEARMERFEGEIRSTI 192 (198)
T ss_dssp CEEEEEHHHHHHHTHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHhHHHH
Confidence 6999999999999999886544
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.27 E-value=0.086 Score=40.30 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHh
Q 043713 59 TRVNAINEICTQAKFSDVTKHFLVVLAEN-GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETL 137 (190)
Q Consensus 59 ~K~~~l~~~~~~~~~~~~~~nfL~ll~~~-~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~ 137 (190)
.|.++++.+|.. +..=|.-+..+ ....+|...+.+.. ...+.-.+.+ ..|=+ ...+...+.. +
T Consensus 74 ar~eli~~v~~~------a~~~L~~~~~~~~Y~~~L~~Li~ea~----~~l~~~~~vv--~~~~D---~~~v~~~~~~-~ 137 (187)
T 3v6i_A 74 ARGEVLEEVRRR------VREALEALPQKPEWPEVVRKLALEAL----EALPGAKALV--ANPED---LPHLEALARE-R 137 (187)
T ss_dssp HHHHHHHHHHHH------HHHHHHHGGGSTTHHHHHHHHHHHHH----HHCTTCCEEE--ECTTT---HHHHHHHHHH-H
T ss_pred HHHHHHHHHHHH------HHHHHHhhhCCccHHHHHHHHHHHHH----HHcCCCCeEE--ECHHH---HHHHHHHHHh-c
Confidence 555666666642 22233333333 24444444444433 2222223322 44444 4444444444 3
Q ss_pred CCCceEEEEeeeCCCCcceeEEEECC--EEeehhHHHHHHHHHHHHccccc
Q 043713 138 GQGKKVKVEQKVDPSILGGLVVEFGQ--KVFDMSIKSRARQMERFLREPIH 186 (190)
Q Consensus 138 ~~~~~v~l~~~vD~sliGGi~i~i~d--~viD~Si~~~L~~l~~~l~~~~~ 186 (190)
| -+ +..++++.|||++...| ..+|+|+.++|+.+...+...++
T Consensus 138 ~--~~----~~~~~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~ 182 (187)
T 3v6i_A 138 G--VE----LQAEPALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVA 182 (187)
T ss_dssp T--CE----EEECTTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred C--ee----eCCCCcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHH
Confidence 4 22 34688999999999843 69999999999999988865554
No 5
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=95.19 E-value=0.0043 Score=43.66 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CCEEeehhHHHHHHHHHHHHccccc
Q 043713 126 EKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQKVFDMSIKSRARQMERFLREPIH 186 (190)
Q Consensus 126 ~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d~viD~Si~~~L~~l~~~l~~~~~ 186 (190)
++.+.+.++++.| +++.++..-..+.+||+++.. |.-.+|.|+.+||+.++.++...++
T Consensus 42 l~~~~~e~~~~~g--~~~~v~~~~~~~~~GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~ 102 (106)
T 3lg8_A 42 LWNLEKEVENATK--KVTVLKKGEPVDIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARIT 102 (106)
T ss_dssp CTTTTTTHHHHSS--SCCCCCCCCCCSSSCBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CeEEEEeCCCccccccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHH
Confidence 3444455677776 666554322357899999998 6678999999999999999876553
No 6
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=93.57 E-value=0.35 Score=38.17 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=45.3
Q ss_pred HcCceEEEEEeecCCC----HHHHHHHHHHHHHHhCCCceEEEEeee------CCCCcceeEEEECC--EEeehhHHHHH
Q 043713 107 HKGEVKVTVTSVIPLP----PEEEKELKETLQETLGQGKKVKVEQKV------DPSILGGLVVEFGQ--KVFDMSIKSRA 174 (190)
Q Consensus 107 ~~~~~~~~V~sa~~L~----~~~~~~l~~~l~~~~~~~~~v~l~~~v------D~sliGGi~i~i~d--~viD~Si~~~L 174 (190)
..+.-.+.|++ .|=+ +.....+...+..+.+ +.......+ +++..||++|..+| -++|.|+-+||
T Consensus 131 ~l~e~~v~V~~-~~~D~~lv~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~RL 207 (233)
T 4efa_E 131 KLLEPKAIVKA-LERDVDLIESMKDDIMREYGEKAQ--RAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERL 207 (233)
T ss_dssp HHCCSEEEEEE-CTTTHHHHTTSHHHHHHHHHHHTT--TSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHHHH
T ss_pred hcCCCcEEEEe-cHhhHHHHHHHHHHHHHHHHHHhC--CCCccccccccccCCcccccCceEEEECCCCEEEECCHHHHH
Confidence 33444555554 3333 3344555556666665 333222223 34578999999854 68999999999
Q ss_pred HHHHHHHc
Q 043713 175 RQMERFLR 182 (190)
Q Consensus 175 ~~l~~~l~ 182 (190)
+.+...+.
T Consensus 208 ~~~~~~~l 215 (233)
T 4efa_E 208 KLLSEEAL 215 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887764
No 7
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=73.55 E-value=3.9 Score=31.60 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=62.6
Q ss_pred CHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCC
Q 043713 43 ADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAE-NGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~-~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L 121 (190)
-..|..++.|+..+.++|....+.+..- .-...--..+.-|+. +|--+.+ +....+.+.|.|- +..|
T Consensus 100 ~E~L~eII~n~n~S~eeK~eA~~ql~eL-t~~~ekE~~IE~LLKAKGF~DAV----------V~i~dd~V~VVVk-a~~L 167 (197)
T 3tuf_A 100 REELNAIVSSDDATAKEKSEAYDKMTAL-SEVEGTEKQLETLIKTQGYEDAL----------VNAEGDKINITVK-SDKH 167 (197)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCSCEE----------EECSSSEEEEEEE-CSCC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCceE----------EEecCCEEEEEEe-CCCC
Confidence 3678889999999999999999988752 111223344554444 3322221 2223345555555 5789
Q ss_pred CHHHHHHHHHHHHHHhCCCceEEEEee
Q 043713 122 PPEEEKELKETLQETLGQGKKVKVEQK 148 (190)
Q Consensus 122 ~~~~~~~l~~~l~~~~~~~~~v~l~~~ 148 (190)
++.+..+|.+.+.+.+|.+..|.+.+.
T Consensus 168 s~~eaaqI~DIV~r~tgv~~dV~Vqf~ 194 (197)
T 3tuf_A 168 SKSKATAIIDLVAKEIKTMKDVAVTFE 194 (197)
T ss_dssp CHHHHHHHHHTSCHHHHTTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCCceEEEee
Confidence 999999999999999985466666654
No 8
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=60.48 E-value=17 Score=24.85 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=38.5
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV 165 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v 165 (190)
++...+++++-.+ .+..+++|...|+++++.|..|. -+|+ +|-.|.+.+..
T Consensus 27 ~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~----~~~~--~g~~I~iQGD~ 77 (101)
T 2xzm_F 27 RGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIV----EEDE--GKKVIKLNGDH 77 (101)
T ss_dssp ETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEE----ECST--TCEEEEEESCC
T ss_pred cCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEe----cCCC--CceEEEEeCcH
Confidence 4566777888777 88889999999999998655553 3455 78888885543
No 9
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=52.90 E-value=27 Score=23.54 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEe
Q 043713 124 EEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVF 166 (190)
Q Consensus 124 ~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~vi 166 (190)
-.-..+.+.|.+.|+ ..+.+.....|+--|-|.|.++|.++
T Consensus 17 ~ra~~laqeLl~~Fp--~~l~V~~~l~p~~~G~FEV~vng~lV 57 (96)
T 2npb_A 17 PKYLQLKEKLEHEFP--GCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHHHHHSB--TTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHhCC--cceEEEEEEcCCCCcEEEEEECCEEE
Confidence 456678889999998 46888888889888999999988655
No 10
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=52.79 E-value=23 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=34.6
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE
Q 043713 118 VIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF 161 (190)
Q Consensus 118 a~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i 161 (190)
..+++.+++++..+.|.+.+. .....+.+.+|++. |.++|++
T Consensus 32 ~~~~~~eel~~av~~lN~~~~-~~n~~L~F~vdee~-~~~vVkV 73 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLE-PSQVHLKFELHDKL-NEYYVKV 73 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-TSSCCEEEEEEEET-TEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEE
Confidence 457889999999999999876 35667888899885 8999988
No 11
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=52.76 E-value=67 Score=23.85 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=33.1
Q ss_pred cCceEEEEEeecCCC---HHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-------cceeEEEEC
Q 043713 108 KGEVKVTVTSVIPLP---PEEEKELKETLQETLGQGKKVKVEQKVDPSI-------LGGLVVEFG 162 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~---~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-------iGGi~i~i~ 162 (190)
.+...+.++|...=. ++|.+.+.+ |++-+. ...|.++++.|+++ =.|++|++|
T Consensus 66 ~~~~~I~L~T~~d~~~~~~~Q~~~L~~-ik~sL~-~~gI~l~~~fs~tiHDR~I~~dnGW~IkiG 128 (163)
T 4a5z_A 66 CKVKTIHLLTSLDEGIEQVQQSRGLQE-IEESLR-SHGVLLEVQYSSSIHDREIRFNNGWMIKIG 128 (163)
T ss_dssp CCCCEEEEEECCCCSTTHHHHHHHHHH-HHHHHH-HTTCEEEEEECTTCCCCEEEETTSEEEEET
T ss_pred CCccEEEEEeCCccccCHHHHHHHHHH-HHHHHH-HCCCEEEEEeCCCccceEEEecCCeEEEEC
Confidence 566778888876432 234443333 333332 14688998888876 358888886
No 12
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=48.48 E-value=25 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHh
Q 043713 44 DTYFQFTKDLSVPAETRVNAINEICT 69 (190)
Q Consensus 44 ~~l~~~l~~p~i~~~~K~~~l~~~~~ 69 (190)
..|-.+|..|.++.++|-..+..+-+
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHhc
Confidence 35667899999999999999988743
No 13
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=42.76 E-value=51 Score=19.43 Aligned_cols=39 Identities=5% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713 45 TYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL 84 (190)
Q Consensus 45 ~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll 84 (190)
.+.....|..+++.+|...+.++-.. +-++++.+...+.
T Consensus 6 SL~~vI~nS~LS~~~K~sYi~~L~~C-ktdqEV~~~Memf 44 (53)
T 1r4g_A 6 SLRLVIESSPLSRAEKAAYVKSLSKC-KTDQEVKAVMELV 44 (53)
T ss_dssp HHHHHHTTSCCCSHHHHHHHHHHHTC-CSSHHHHHHHHHH
T ss_pred hHhhhhcCCcccHHHHHHHHHHHHHc-cchHHHHHHHHHH
Confidence 45667888899999999999998764 7889988877654
No 14
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=41.79 E-value=47 Score=19.46 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEEeecCCCHHHHHHHHHHHHHH
Q 043713 112 KVTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 112 ~~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
.++|.+..+.+++|++++.+.+.+.
T Consensus 3 ~i~i~~~~g~s~eqk~~l~~~lt~~ 27 (64)
T 3abf_A 3 VLKVTLLEGRPPEKKRELVRRLTEM 27 (64)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3677777789999999888877654
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=41.78 E-value=21 Score=21.60 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHhhhCCCC---CHHHHHHHHHH
Q 043713 47 FQFTKDLSV---PAETRVNAINE 66 (190)
Q Consensus 47 ~~~l~~p~i---~~~~K~~~l~~ 66 (190)
..||.+|.+ |.++|.++|.+
T Consensus 17 v~FL~dp~V~~sp~~~K~~FL~s 39 (54)
T 3ff5_A 17 VKFLQNSRVRQSPLATRRAFLKK 39 (54)
T ss_dssp HHHHHCTTGGGSCHHHHHHHHHH
T ss_pred HHHhCChhhhcCCHHHHHHHHHH
Confidence 358888887 68889999875
No 16
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=37.71 E-value=44 Score=23.38 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=30.1
Q ss_pred cCceEEEEEee--cCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCC
Q 043713 108 KGEVKVTVTSV--IPLPPEEEKELKETLQETLGQGKKVKVEQKVDP 151 (190)
Q Consensus 108 ~~~~~~~V~sa--~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~ 151 (190)
.+.+...|.++ .=.++...++|.+.|+..|| +.|.+...++.
T Consensus 52 ~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G--~~v~L~i~~g~ 95 (128)
T 2aya_A 52 DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKG--STVELTIVEDD 95 (128)
T ss_dssp SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHS--SCCEEEEEECC
T ss_pred CCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHC--CCEEEEEEECC
Confidence 34444555443 33578999999999999998 78888866543
No 17
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.84 E-value=52 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.3
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
++|.. .+.|++|+++|.+.+.+.
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~ 25 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSV 25 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHH
Confidence 56666 789999999998877654
No 18
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=35.66 E-value=31 Score=19.18 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred CHHHHHhhhCCCCCHHHHHHHHHHH
Q 043713 43 ADTYFQFTKDLSVPAETRVNAINEI 67 (190)
Q Consensus 43 ~~~l~~~l~~p~i~~~~K~~~l~~~ 67 (190)
...|-.+|..|.++.++|-..+..+
T Consensus 11 QnaFYevLh~~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 11 QRRFYEALHDPNLNEEQRNAKIKSI 35 (38)
T ss_dssp SHHHHHHHSCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHh
Confidence 4567789999999999999999876
No 19
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=32.97 E-value=30 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.5
Q ss_pred HHhhhCCCC---CHHHHHHHHHH
Q 043713 47 FQFTKDLSV---PAETRVNAINE 66 (190)
Q Consensus 47 ~~~l~~p~i---~~~~K~~~l~~ 66 (190)
..||.+|.| |.++|.++|.+
T Consensus 22 v~FLqdp~V~~sp~~~K~~FL~s 44 (70)
T 2w84_A 22 VKFLQNSRVRQSPLATRRAFLKK 44 (70)
T ss_dssp HHHHCSTTGGGSCHHHHHHHHHH
T ss_pred HHHhCChhhhhCCHHHHHHHHHH
Confidence 348888887 67888888875
No 20
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=31.27 E-value=51 Score=22.78 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEEee
Q 043713 120 PLPPEEEKELKETLQETLGQGKKVKVEQK 148 (190)
Q Consensus 120 ~L~~~~~~~l~~~l~~~~~~~~~v~l~~~ 148 (190)
|=|.+-.++|+++|++||+ +....+++.
T Consensus 26 PSSkeTyEWLqAal~RKyp-~~~f~~~YI 53 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKYP-NISFKYTYI 53 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCT-TSCEEEEEE
T ss_pred CCchhHHHHHHHHHhCcCC-CCceEEEEE
Confidence 6678999999999999998 577777763
No 21
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=29.24 E-value=84 Score=17.95 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.7
Q ss_pred EEEEEeecCCCHHHHHHHHHHHHHH
Q 043713 112 KVTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 112 ~~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
.++|.+....+++++++|.+.+.+.
T Consensus 5 ~i~i~~~~g~s~e~k~~l~~~l~~~ 29 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQLKNLVSEVTDA 29 (63)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567777778999998888876553
No 22
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical protein, structural genomics, PS protein structure initiative; 1.80A {Bacteroides fragilis}
Probab=28.34 E-value=1.7e+02 Score=22.07 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred cCChhhHHHHHHHHHHHHHHHcCceEEEE----EeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEEC
Q 043713 87 NGRLRNLDTIAKRFVELTMAHKGEVKVTV----TSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFG 162 (190)
Q Consensus 87 ~~r~~~l~~I~~~f~~l~~~~~~~~~~~V----~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~ 162 (190)
-+|-..+..+.+..-.++....-.-.+.- ..-..+|+++.+.++..|...+| ..-..-...||+ ++++
T Consensus 33 ~~~~~fi~~~~klLp~Ly~k~s~Lp~~e~~~~~~~e~~Vte~d~~~lr~~la~lLg--~~D~Y~evfdpd------m~~s 104 (182)
T 3nrh_A 33 MKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLASILA--EKDDYLEVFLPD------MAYS 104 (182)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHG--GGSEEEC---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccCHHHHHHHHHHHHHHcC--CCCceeeeeccc------cccC
Confidence 35667777777777777776554432221 12345789999999999999998 334666677885 4557
Q ss_pred CEEeehhHHHHHHHHHHHHccc
Q 043713 163 QKVFDMSIKSRARQMERFLREP 184 (190)
Q Consensus 163 d~viD~Si~~~L~~l~~~l~~~ 184 (190)
+..+-+|+...|..+-+.|.+-
T Consensus 105 d~p~~~~iSdDLaDIy~dLk~g 126 (182)
T 3nrh_A 105 DEPIKKNISEDLADIYQDIKDF 126 (182)
T ss_dssp ---CEEEHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHH
Confidence 7999999999999998888653
No 23
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=28.31 E-value=1.2e+02 Score=20.05 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=30.0
Q ss_pred CceEEEEEeecC---C--CHHHHHHHHHHHHHHhCC-CceEEE--EeeeCCCC
Q 043713 109 GEVKVTVTSVIP---L--PPEEEKELKETLQETLGQ-GKKVKV--EQKVDPSI 153 (190)
Q Consensus 109 ~~~~~~V~sa~~---L--~~~~~~~l~~~l~~~~~~-~~~v~l--~~~vD~sl 153 (190)
+.+.+.|+||.| + ....+++|++.|++.++. +++|.+ ...-+|++
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~~P~l 87 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGS 87 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCC
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCc
Confidence 345677788887 2 346699999999999952 245555 44445544
No 24
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=28.15 E-value=31 Score=24.53 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD 167 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD 167 (190)
++...+++++-.+. +..+++|.+.|+++++.|..|. -+|+ +|-.|++.+..-|
T Consensus 52 ~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk----~~~e--~g~~I~IQGD~r~ 104 (126)
T 2if1_A 52 NGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVI----EHPE--YGEVIQLQGDQRK 104 (126)
T ss_dssp SSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEE----CCTT--TSSEEEESBCCHH
T ss_pred cCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEe----cCCC--CccEEEEcCCHHH
Confidence 45556777777776 6779999999999998544432 3455 6777887664443
No 25
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=27.60 E-value=2.6e+02 Score=23.04 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 043713 77 TKHFLVVLAENGRLRNLDTIAKRFVELTMA 106 (190)
Q Consensus 77 ~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~ 106 (190)
+..||-+.|+++....+...++.|.....+
T Consensus 247 Fl~lLllt~q~~~~~lF~~L~~~Y~~~l~r 276 (336)
T 3lpz_A 247 FISMLLLSVQKGSPDLFRQLKSKYEANLNE 276 (336)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 344445558999988888888888876654
No 26
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=26.30 E-value=98 Score=17.73 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.8
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
++|......|++|+++|.+.+.+.
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~ 26 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEA 26 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456665667999999988877553
No 27
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=26.18 E-value=41 Score=23.51 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.2
Q ss_pred eEEEEEeecCCCHHHHHHHHHHHHHHhCCCceE
Q 043713 111 VKVTVTSVIPLPPEEEKELKETLQETLGQGKKV 143 (190)
Q Consensus 111 ~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v 143 (190)
..+++++-.+..+..+++|...|+++++.|..|
T Consensus 45 K~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV 77 (116)
T 1d1r_A 45 KGVCLITGVDLDDAELTKLAAELKKKCGCGGAV 77 (116)
T ss_dssp CCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC
T ss_pred CeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE
Confidence 677788888888999999999999999865555
No 28
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.92 E-value=1e+02 Score=17.71 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.8
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
++|......|++|+++|.+.+.+.
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~ 26 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEA 26 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456666677999999988877553
No 29
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=24.03 E-value=1.4e+02 Score=20.26 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHcCChhhHHH---------HHHHHHHHHHHHcCce---EEEEEeecCCCHHHHHHHHHHHHHHhCCCc
Q 043713 74 SDVTKHFLVVLAENGRLRNLDT---------IAKRFVELTMAHKGEV---KVTVTSVIPLPPEEEKELKETLQETLGQGK 141 (190)
Q Consensus 74 ~~~~~nfL~ll~~~~r~~~l~~---------I~~~f~~l~~~~~~~~---~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~ 141 (190)
++.+..++.-++..+++-++.. -+..-.+++++. |+- ...+- ++++ ..+++.|.+.+| .
T Consensus 2 ~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~~~~~~d----v~~~--~~~~~~l~~~sg--~ 72 (121)
T 3gx8_A 2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-GVDPAKFAAYN----VLED--PELREGIKEFSE--W 72 (121)
T ss_dssp CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH-TBCGGGEEEEE----CTTC--HHHHHHHHHHHT--C
T ss_pred CHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc-CCCcceEEEEE----ecCC--HHHHHHHHHHhC--C
Confidence 5677788888888887755443 233444444443 333 22221 2211 345566677777 3
Q ss_pred eEEEEeeeCCCCccee
Q 043713 142 KVKVEQKVDPSILGGL 157 (190)
Q Consensus 142 ~v~l~~~vD~sliGGi 157 (190)
.-....-||-..|||+
T Consensus 73 ~tvP~vfI~g~~iGG~ 88 (121)
T 3gx8_A 73 PTIPQLYVNKEFIGGC 88 (121)
T ss_dssp CSSCEEEETTEEEESH
T ss_pred CCCCeEEECCEEEecH
Confidence 3345556888888886
No 30
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=23.05 E-value=2.6e+02 Score=22.19 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=31.6
Q ss_pred HcCceEEEEEeecC--CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-------cceeEEEEC
Q 043713 107 HKGEVKVTVTSVIP--LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-------LGGLVVEFG 162 (190)
Q Consensus 107 ~~~~~~~~V~sa~~--L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-------iGGi~i~i~ 162 (190)
-.+...+.++|... -..++....-+.|++-+. ...|.+++..|+++ =.|++|++|
T Consensus 153 ~~~~~~i~L~T~~d~~~~~~~q~~~l~~ik~sl~-~~gi~~~~~~~~tiHDR~I~~dnGW~Ikig 216 (257)
T 2ymb_A 153 PCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLR-SHGVLLEVQYSSSIHDREIRFNNGWMIKIG 216 (257)
T ss_dssp -CCCCEEEEEECCCSSTTHHHHHHHHHHHHHHHH-HHTCEEEEEECTTCCCCEEEETTSEEEEES
T ss_pred cCccceEEEEecCCCcccHHHHHHHHHHHHHHHH-hCCCEEEEEECCCccceeEEecCCcEEEec
Confidence 34677888888654 233222222233333332 14588888888876 468888876
No 31
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.94 E-value=1.3e+02 Score=18.14 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.9
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVIPLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~~L~~~~~~~l~~~l~~~ 136 (190)
++|......|++|+++|.+.+.+.
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~ 27 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAA 27 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456655679999999988877553
No 32
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=22.20 E-value=93 Score=21.22 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=36.8
Q ss_pred cCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEe
Q 043713 108 KGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVF 166 (190)
Q Consensus 108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~vi 166 (190)
++...+++++-.+ ++...++|...|+++++.|..| .-+|+ +|-.|++.+..-
T Consensus 34 ~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~acggsV----~~~~~--~g~~I~iQGD~r 85 (108)
T 2ogh_A 34 NGRKTLTTVQGVP-EEYDLKRILKVLKKDFACNGNI----VKDPE--MGEIIQLQGDQR 85 (108)
T ss_dssp SSSCCEEEEECCC-TTSCHHHHHHHHHHHHCCCEEE----ECCTT--SSCEEEEESSCH
T ss_pred cCCceEEEEeCCC-cchhHHHHHHHHHHHhcCceEE----ecCCC--CceEEEEcCCHH
Confidence 4566778888777 4678999999999999854333 24455 577888855433
No 33
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=20.81 E-value=1.2e+02 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=34.2
Q ss_pred HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhC
Q 043713 86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLG 138 (190)
Q Consensus 86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~ 138 (190)
.+|++.-|.++++.|..-- . ...||+++++.|.+.|+..++
T Consensus 278 HdG~~~tLeevv~~y~~~~---~---------~~~Lt~~E~~~LvAFL~tLtd 318 (341)
T 4aan_A 278 HSGKVWKLKDAVKIMGSAQ---L---------GISITDADADKIVTFLNTLTG 318 (341)
T ss_dssp TTCCBCCHHHHHHHHHHHH---H---------SCCCCHHHHHHHHHHHHTTCC
T ss_pred cCCCcCCHHHHHHHHhccC---c---------CCCCCHHHHHHHHHHHHccCC
Confidence 5889999999999887432 1 357999999999999999887
No 34
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=20.63 E-value=1.4e+02 Score=17.64 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.4
Q ss_pred EEEEeec---CCCHHHHHHHHHHHHHH
Q 043713 113 VTVTSVI---PLPPEEEKELKETLQET 136 (190)
Q Consensus 113 ~~V~sa~---~L~~~~~~~l~~~l~~~ 136 (190)
++|.... ..|++|+++|.+.+.+.
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~ 29 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDL 29 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 4555554 68999999988877554
No 35
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=20.45 E-value=1.8e+02 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=24.2
Q ss_pred cCceEEEEEeecC-----CCHHHHHHHHHHHHHHhC
Q 043713 108 KGEVKVTVTSVIP-----LPPEEEKELKETLQETLG 138 (190)
Q Consensus 108 ~~~~~~~V~sa~~-----L~~~~~~~l~~~l~~~~~ 138 (190)
.+...+.|+|+.| =....+++|...|++.++
T Consensus 46 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~ 81 (243)
T 2xzm_C 46 PTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFG 81 (243)
T ss_dssp SSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhC
Confidence 3556788888876 245679999999999994
No 36
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=20.25 E-value=1e+02 Score=20.81 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=19.8
Q ss_pred cCceEEE--EEeecCCCHHHHHHHHHHHHH
Q 043713 108 KGEVKVT--VTSVIPLPPEEEKELKETLQE 135 (190)
Q Consensus 108 ~~~~~~~--V~sa~~L~~~~~~~l~~~l~~ 135 (190)
.|-..++ |..+..|+++|++.|++..+.
T Consensus 67 ~GDL~v~~~V~~P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 67 TGDLFAVIKIVMPTKPDEKARELWQQLAAA 96 (109)
T ss_dssp BCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred CcCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3444444 455566999999999997765
Done!