BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043717
         (246 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
           Resolution 2.5a, Northeast Structural Genomics
           Consortium Target Psr10
 pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
           Resolution 2.5a, Northeast Structural Genomics
           Consortium Target Psr10
          Length = 336

 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 91  NWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVEAALGRPKGSLQK--------PIY 142
           +WL  +   P+    +   I  AT++  ++ +    E  +    G+  +        P++
Sbjct: 211 DWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTXPAPVF 270

Query: 143 TRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGSSVESAALSGMALAN 193
           +  H W  A P        + D      +CG+W L   VE A LSG   A 
Sbjct: 271 SLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAAR 321


>pdb|2CAM|A Chain A, Avidin Mutant (K3e,K9e,R26d,R124l)
 pdb|2CAM|B Chain B, Avidin Mutant (K3e,K9e,R26d,R124l)
          Length = 127

 Score = 30.4 bits (67), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 37  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 92

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 93  KTMWLLRSSV 102


>pdb|1RAV|A Chain A, Recombinant Avidin
 pdb|1RAV|B Chain B, Recombinant Avidin
          Length = 127

 Score = 30.4 bits (67), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 37  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 92

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 93  KTMWLLRSSV 102


>pdb|2A8G|A Chain A, Structure Of Avidin In Complex With The Ligand
           Deoxyguanosine
 pdb|2A8G|B Chain B, Structure Of Avidin In Complex With The Ligand
           Deoxyguanosine
          Length = 126

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 36  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 91

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 92  KTMWLLRSSV 101


>pdb|2AVI|A Chain A, Three-Dimensional Structures Of Avidin And The
           Avidin-Biotin Complex
 pdb|2AVI|B Chain B, Three-Dimensional Structures Of Avidin And The
           Avidin-Biotin Complex
 pdb|1AVD|A Chain A, Three-Dimensional Structure Of The Tetragonal Crystal Form
           Of Egg- White Avidin In Its Functional Complex With
           Biotin At 2.7 Angstroms Resolution
 pdb|1AVD|B Chain B, Three-Dimensional Structure Of The Tetragonal Crystal Form
           Of Egg- White Avidin In Its Functional Complex With
           Biotin At 2.7 Angstroms Resolution
 pdb|1AVE|A Chain A, Crystal Structure Of Hen Egg-White Apo-Avidin In Relation
           To Its Thermal Stability Properties
 pdb|1AVE|B Chain B, Crystal Structure Of Hen Egg-White Apo-Avidin In Relation
           To Its Thermal Stability Properties
 pdb|1IJ8|A Chain A, Crystal Structure Of Lite Avidin-bni Complex
 pdb|1IJ8|B Chain B, Crystal Structure Of Lite Avidin-bni Complex
 pdb|1LDO|A Chain A, Avidin-Norbioitn Complex
 pdb|1LDO|B Chain B, Avidin-Norbioitn Complex
 pdb|1LDQ|A Chain A, Avidin-Homobiotin Complex
 pdb|1LDQ|B Chain B, Avidin-Homobiotin Complex
 pdb|1LEL|A Chain A, The Avidin Bcap Complex
 pdb|1LEL|B Chain B, The Avidin Bcap Complex
 pdb|3FDC|A Chain A, Crystal Structure Of Avidin
 pdb|3FDC|B Chain B, Crystal Structure Of Avidin
          Length = 128

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 38  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 93

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 94  KTMWLLRSSV 103


>pdb|2A5B|A Chain A, Avidin Complexed With 8-Oxodeoxyguanosine
 pdb|2A5B|B Chain B, Avidin Complexed With 8-Oxodeoxyguanosine
          Length = 124

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 38  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 93

Query: 172 CGNWLLGSSVE 182
              WLL SSV 
Sbjct: 94  KTMWLLRSSVN 104


>pdb|2A5C|A Chain A, Structure Of Avidin In Complex With The Ligand
           8-Oxodeoxyadenosine
 pdb|2A5C|B Chain B, Structure Of Avidin In Complex With The Ligand
           8-Oxodeoxyadenosine
          Length = 123

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 38  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 93

Query: 172 CGNWLLGSSVE 182
              WLL SSV 
Sbjct: 94  KTMWLLRSSVN 104


>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
 pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
 pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
           Sporobolomyces Salmonicolor
 pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
           Sporobolomyces Salmonicolor
          Length = 342

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 32/144 (22%)

Query: 64  GMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIAR------QMKENIPTATAEK 117
           G+ H+   V    ++D VV    G   N L  ++  P + R       +   IP    E 
Sbjct: 86  GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEG 145

Query: 118 V----KKGMLEGVEAALGRPKGSLQKPIY------TRVHL--W------------GAALP 153
           +    K   LE ++ A   P+   QK ++      T   L  W             A LP
Sbjct: 146 IYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLP 205

Query: 154 TNTPSIPCIFDPHGRAGICGNWLL 177
             T  I  IFDP  ++G    W++
Sbjct: 206 NYT--IGTIFDPETQSGSTSGWMM 227


>pdb|1NQN|A Chain A, Structure Of Avm-W110k (W110k Mutant Of Avidin)
 pdb|1NQN|B Chain B, Structure Of Avm-W110k (W110k Mutant Of Avidin)
          Length = 122

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G E  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 37  TATSNEIKESPLHGTENTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 92

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 93  KTMWLLRSSV 102


>pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           WITH BOUND NADH
 pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           WITH BOUND NADH
 pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 pdb|2YBB|1 Chain 1, Fitted Model For Bovine  Mitochondrial Supercomplex
           I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
 pdb|4HEA|1 Chain 1, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
 pdb|4HEA|B Chain B, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
          Length = 438

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 77  QFDVVVIAHNGKCANWLLG----SSGLPQIARQMKENIPTATAEKVKKGMLEGVEAALGR 132
           +F+  + AH GK  +W L       G     R +KE  P    E+VK+  L G   A G 
Sbjct: 12  RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGA-GF 70

Query: 133 PKG 135
           P G
Sbjct: 71  PTG 73


>pdb|3VHI|A Chain A, Crystal Structure Of Monoz-Biotin-Avidin Complex
 pdb|3VHI|B Chain B, Crystal Structure Of Monoz-Biotin-Avidin Complex
 pdb|3VHI|C Chain C, Crystal Structure Of Monoz-Biotin-Avidin Complex
 pdb|3VHI|D Chain D, Crystal Structure Of Monoz-Biotin-Avidin Complex
          Length = 122

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G +  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 37  TATSNEIKESPLHGTQNTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 92

Query: 172 CGNWLLGSSVE 182
              WLL SSV 
Sbjct: 93  KTMWLLRSSVN 103


>pdb|1VYO|A Chain A, Crystal Structure Of Avidin
 pdb|1VYO|B Chain B, Crystal Structure Of Avidin
          Length = 128

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G +  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 38  TATSNEIKESPLHGTQNTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 93

Query: 172 CGNWLLGSSV 181
              WLL SSV
Sbjct: 94  KTMWLLRSSV 103


>pdb|3VGW|A Chain A, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|B Chain B, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|C Chain C, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|D Chain D, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|E Chain E, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|F Chain F, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|G Chain G, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VGW|H Chain H, Crystal Structure Of Monoac-Biotin-Avidin Complex
 pdb|3VHH|A Chain A, Crystal Structure Of Dime-Biotin-Avidin Complex
 pdb|3VHH|B Chain B, Crystal Structure Of Dime-Biotin-Avidin Complex
 pdb|3VHH|C Chain C, Crystal Structure Of Dime-Biotin-Avidin Complex
 pdb|3VHH|D Chain D, Crystal Structure Of Dime-Biotin-Avidin Complex
 pdb|3VHM|A Chain A, Crystal Structure Of Npc-Biotin-Avidin Complex
 pdb|3VHM|B Chain B, Crystal Structure Of Npc-Biotin-Avidin Complex
 pdb|3VHM|C Chain C, Crystal Structure Of Npc-Biotin-Avidin Complex
 pdb|3VHM|D Chain D, Crystal Structure Of Npc-Biotin-Avidin Complex
          Length = 123

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 112 TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGI 171
           TAT+ ++K+  L G +  + +      +P +     W  +  T   +  C  D +G+  +
Sbjct: 38  TATSNEIKESPLHGTQNTINKR----TQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVL 93

Query: 172 CGNWLLGSSVE 182
              WLL SSV 
Sbjct: 94  KTMWLLRSSVN 104


>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
          Length = 262

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 96  SSGLPQIARQMKENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTN 155
           ++ L ++AR++   I   TAEK    +     A +  P+G + K  Y ++HL+       
Sbjct: 69  TTFLXELARELGLYIVAGTAEKSGNYLYNS--AVVVGPRGYIGK--YRKIHLFYREKVFF 124

Query: 156 TPSIP--CIFDP-HGRAG--ICGNWLLGSSVESAALSGMALANHIADYLGSGGVRPEEFA 210
            P      +FD    + G  IC +W    S  + AL G  +  H A+ +     R     
Sbjct: 125 EPGDLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANLVXPYAPRAXPIR 184

Query: 211 VGLHNEFQLLEGHDIGQFPGLESVKK 236
             L N    +    +G+  GL+ + K
Sbjct: 185 -ALENRVYTITADRVGEERGLKFIGK 209


>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
 pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
          Length = 336

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  TDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCW 55
            DS+F   +  G+R +  +H    M  I++ CW
Sbjct: 276 VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCW 308


>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
           Inhibition Of C-kit Tyrosine Kinase
          Length = 313

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  TDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCW 55
            DS+F   +  G+R +  +H    M  I++ CW
Sbjct: 253 VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCW 285


>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
          Length = 336

 Score = 27.3 bits (59), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  TDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCW 55
            DS+F   +  G+R +  +H    M  I++ CW
Sbjct: 276 VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCW 308


>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
           Inhibition Of C- Kit Tyrosine Kinase
          Length = 331

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  TDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCW 55
            DS+F   +  G+R +  +H    M  I++ CW
Sbjct: 271 VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCW 303


>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
 pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
          Length = 329

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  TDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCW 55
            DS+F   +  G+R +  +H    M  I++ CW
Sbjct: 269 VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCW 301


>pdb|4GTU|A Chain A, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|B Chain B, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|C Chain C, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|D Chain D, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|E Chain E, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|F Chain F, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|G Chain G, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
 pdb|4GTU|H Chain H, Ligand-Free Homodimeric Human Glutathione S-Transferase
           M4-4
          Length = 217

 Score = 27.3 bits (59), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 123 LEGVEAALGRPKGS--LQKPIYTRVHLWG 149
            EG+E      K S  L KP+YTRV +WG
Sbjct: 187 FEGLEKISAYMKSSRFLPKPLYTRVAVWG 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,881,930
Number of Sequences: 62578
Number of extensions: 339152
Number of successful extensions: 678
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 22
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)