BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043717
         (246 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P16234|PGFRA_HUMAN Platelet-derived growth factor receptor alpha OS=Homo sapiens
           GN=PDGFRA PE=1 SV=1
          Length = 1089

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 22  VTDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCWISNLEPFNGMWHLRENVK 73
           + DS F + +  G+R    DH  + +  I+  CW S  E     +HL E V+
Sbjct: 900 MVDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVE 951


>sp|P26618|PGFRA_MOUSE Platelet-derived growth factor receptor alpha OS=Mus musculus
           GN=Pdgfra PE=1 SV=3
          Length = 1089

 Score = 32.7 bits (73), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 22  VTDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCWISNLEPFNGMWHLRENVK 73
           + DS F + +  G+R    DH  + +  I+  CW S  E     +HL E V+
Sbjct: 900 MVDSTFYNKIKSGYRMAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVE 951


>sp|P20786|PGFRA_RAT Platelet-derived growth factor receptor alpha OS=Rattus norvegicus
           GN=Pdgfra PE=1 SV=2
          Length = 1088

 Score = 32.7 bits (73), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 22  VTDSRFMSWLMVGWREVWCDHGKTSMVSIVRPCWISNLEPFNGMWHLRENVK 73
           + DS F + +  G+R    DH  + +  I+  CW S  E     +HL E V+
Sbjct: 899 MVDSTFYNKIKSGYRMAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVE 950


>sp|Q3A2J9|GATB_PELCD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
           GN=gatB PE=3 SV=1
          Length = 478

 Score = 31.6 bits (70), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 116 EKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNW 175
           E++++ + E  EA + R  G L  P Y    L  AA          +   HG A +C NW
Sbjct: 289 EQIRRELPELPEAKIARFVGELGIPQYDAEVL--AADRAMAEYYDSLVKAHGNAKLCANW 346

Query: 176 LLGSSVESAALSGMALA 192
           ++G    +   SG  +A
Sbjct: 347 VMGELQRALNDSGAGIA 363


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,979,619
Number of Sequences: 539616
Number of extensions: 4209056
Number of successful extensions: 8782
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8779
Number of HSP's gapped (non-prelim): 5
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)