Query 043717
Match_columns 246
No_of_seqs 152 out of 1004
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 3.9E-38 8.3E-43 274.5 11.4 194 1-199 40-331 (331)
2 TIGR00562 proto_IX_ox protopor 99.8 7.5E-20 1.6E-24 172.4 17.0 147 48-199 238-460 (462)
3 PRK12416 protoporphyrinogen ox 99.8 6.4E-19 1.4E-23 166.6 15.8 147 49-199 240-461 (463)
4 PLN02576 protoporphyrinogen ox 99.8 2.7E-17 5.9E-22 156.7 16.5 151 49-202 253-490 (496)
5 PRK11883 protoporphyrinogen ox 99.7 4.1E-16 8.8E-21 146.0 15.5 145 49-197 235-450 (451)
6 COG1232 HemY Protoporphyrinoge 99.7 5E-16 1.1E-20 146.3 13.8 145 48-196 227-443 (444)
7 TIGR03467 HpnE squalene-associ 99.6 1.1E-14 2.4E-19 134.5 16.0 148 48-197 212-419 (419)
8 PF01593 Amino_oxidase: Flavin 99.5 2.2E-13 4.8E-18 123.9 13.2 145 48-196 224-450 (450)
9 PRK07233 hypothetical protein; 99.5 1E-12 2.2E-17 122.2 16.2 150 48-200 213-432 (434)
10 TIGR02732 zeta_caro_desat caro 99.4 2.7E-12 5.8E-17 122.6 15.7 147 48-196 234-474 (474)
11 PLN02612 phytoene desaturase 99.4 1.2E-11 2.5E-16 120.7 17.5 154 48-201 323-550 (567)
12 PLN02268 probable polyamine ox 99.4 1.2E-11 2.6E-16 116.1 14.5 146 48-199 211-434 (435)
13 PLN02487 zeta-carotene desatur 99.3 1.3E-10 2.7E-15 113.4 17.5 150 48-199 310-553 (569)
14 PLN02529 lysine-specific histo 99.3 1.1E-10 2.4E-15 116.5 15.4 152 48-201 367-600 (738)
15 KOG1276 Protoporphyrinogen oxi 99.3 2.1E-11 4.5E-16 113.0 9.5 144 48-196 264-490 (491)
16 PLN02328 lysine-specific histo 99.2 1.5E-10 3.2E-15 116.3 14.9 156 48-205 447-685 (808)
17 TIGR02731 phytoene_desat phyto 99.2 2.3E-10 5E-15 108.0 15.5 148 48-195 228-452 (453)
18 PRK07208 hypothetical protein; 99.2 4.3E-10 9.3E-15 106.8 13.1 148 48-198 233-460 (479)
19 PLN03000 amine oxidase 99.1 3E-09 6.5E-14 107.4 16.3 154 48-203 391-627 (881)
20 PLN02676 polyamine oxidase 99.1 4.8E-09 1.1E-13 100.6 15.5 152 48-202 245-476 (487)
21 PLN02976 amine oxidase 98.9 3.1E-08 6.8E-13 103.7 16.6 153 48-203 946-1190(1713)
22 PLN02568 polyamine oxidase 98.8 1.9E-07 4.1E-12 90.8 18.2 151 49-200 256-536 (539)
23 COG1231 Monoamine oxidase [Ami 98.6 2.1E-06 4.5E-11 80.8 15.3 152 48-201 221-449 (450)
24 COG2907 Predicted NAD/FAD-bind 98.4 5.4E-07 1.2E-11 82.3 6.2 50 49-98 233-282 (447)
25 TIGR02733 desat_CrtD C-3',4' d 98.3 1.8E-05 4E-10 75.6 15.5 49 48-96 247-301 (492)
26 TIGR02734 crtI_fam phytoene de 98.3 1.8E-05 3.9E-10 75.8 14.7 45 48-92 234-279 (502)
27 KOG0685 Flavin-containing amin 98.2 2.2E-05 4.8E-10 74.3 12.9 148 49-200 245-492 (498)
28 TIGR02730 carot_isom carotene 98.1 8.1E-05 1.8E-09 71.4 13.6 49 48-96 244-294 (493)
29 KOG0029 Amine oxidase [Seconda 97.9 0.00044 9.6E-09 66.8 14.6 154 45-200 226-460 (501)
30 PF13738 Pyr_redox_3: Pyridine 96.0 0.009 2E-07 49.7 4.1 40 48-87 97-136 (203)
31 TIGR01984 UbiH 2-polyprenyl-6- 95.3 0.22 4.8E-06 45.5 11.2 48 47-94 120-168 (382)
32 TIGR03197 MnmC_Cterm tRNA U-34 95.2 0.22 4.7E-06 45.9 10.8 43 47-89 148-190 (381)
33 PRK11445 putative oxidoreducta 94.7 0.52 1.1E-05 43.1 11.8 43 46-88 111-156 (351)
34 PF13454 NAD_binding_9: FAD-NA 94.4 0.071 1.5E-06 43.3 4.7 42 45-86 112-154 (156)
35 PRK06116 glutathione reductase 94.3 0.28 6E-06 46.4 9.1 103 48-197 223-327 (450)
36 PRK08773 2-octaprenyl-3-methyl 94.0 1.3 2.8E-05 40.9 12.9 48 47-94 127-175 (392)
37 PRK07494 2-octaprenyl-6-methox 94.0 0.5 1.1E-05 43.4 10.1 39 51-89 129-167 (388)
38 PRK05249 soluble pyridine nucl 94.0 0.31 6.8E-06 46.1 8.9 103 48-197 231-334 (461)
39 PF05834 Lycopene_cycl: Lycope 93.8 1.4 3E-05 40.8 12.7 142 48-197 101-290 (374)
40 TIGR03329 Phn_aa_oxid putative 93.6 1.4 3E-05 41.9 12.5 140 48-197 198-393 (460)
41 TIGR01350 lipoamide_DH dihydro 93.6 0.44 9.5E-06 45.1 9.1 103 48-197 226-331 (461)
42 PF01266 DAO: FAD dependent ox 93.5 0.14 3.1E-06 45.5 5.4 47 48-96 162-209 (358)
43 PRK08850 2-octaprenyl-6-methox 92.9 2.7 5.9E-05 39.0 13.3 47 48-94 127-174 (405)
44 PRK12409 D-amino acid dehydrog 92.9 1.2 2.6E-05 41.3 10.8 142 48-197 212-405 (410)
45 TIGR01424 gluta_reduc_2 glutat 92.6 0.84 1.8E-05 43.2 9.5 103 48-197 222-325 (446)
46 TIGR01421 gluta_reduc_1 glutat 92.4 0.92 2E-05 43.1 9.5 103 48-197 222-327 (450)
47 COG0654 UbiH 2-polyprenyl-6-me 92.2 2.3 5.1E-05 39.3 11.8 143 48-200 120-317 (387)
48 COG2081 Predicted flavoprotein 92.0 0.24 5.1E-06 46.6 4.8 39 48-86 126-164 (408)
49 PF03486 HI0933_like: HI0933-l 92.0 0.28 6.1E-06 46.4 5.4 40 48-87 124-164 (409)
50 TIGR02032 GG-red-SF geranylger 91.7 3.1 6.6E-05 36.0 11.3 42 48-89 106-148 (295)
51 PRK14727 putative mercuric red 91.2 1.2 2.6E-05 42.7 8.8 102 48-197 243-345 (479)
52 PRK05329 anaerobic glycerol-3- 90.9 1.2 2.7E-05 42.3 8.5 46 48-93 274-322 (422)
53 PRK06327 dihydrolipoamide dehy 90.6 1.4 3E-05 42.1 8.7 103 48-197 239-346 (475)
54 COG3349 Uncharacterized conser 90.6 0.52 1.1E-05 45.5 5.6 87 113-202 373-466 (485)
55 PRK07364 2-octaprenyl-6-methox 90.2 3.4 7.4E-05 38.2 10.8 42 47-88 136-180 (415)
56 TIGR03378 glycerol3P_GlpB glyc 90.1 1.2 2.6E-05 42.4 7.6 50 48-97 278-330 (419)
57 PRK09897 hypothetical protein; 89.5 0.74 1.6E-05 45.1 5.9 40 48-87 124-164 (534)
58 PLN02172 flavin-containing mon 89.2 0.56 1.2E-05 45.0 4.7 39 50-88 130-172 (461)
59 TIGR01372 soxA sarcosine oxida 89.2 3 6.4E-05 43.9 10.3 36 166-201 438-473 (985)
60 PLN02463 lycopene beta cyclase 88.4 11 0.00025 35.9 13.0 37 48-85 129-165 (447)
61 PF00743 FMO-like: Flavin-bind 88.2 0.79 1.7E-05 44.8 5.1 40 49-88 102-149 (531)
62 TIGR01373 soxB sarcosine oxida 88.2 13 0.00028 34.4 13.0 142 48-197 198-384 (407)
63 PF07156 Prenylcys_lyase: Pren 87.9 0.73 1.6E-05 43.0 4.4 60 141-201 289-350 (368)
64 PTZ00383 malate:quinone oxidor 87.5 1.2 2.6E-05 43.2 5.8 42 48-90 232-274 (497)
65 PTZ00052 thioredoxin reductase 87.4 3.6 7.7E-05 39.8 9.0 102 48-197 237-340 (499)
66 PRK11259 solA N-methyltryptoph 87.1 1 2.2E-05 41.0 4.9 46 48-95 164-209 (376)
67 PRK06467 dihydrolipoamide dehy 86.8 3.5 7.5E-05 39.5 8.5 102 48-197 229-336 (471)
68 PRK06185 hypothetical protein; 86.4 16 0.00036 33.6 12.6 48 47-94 123-175 (407)
69 PRK06115 dihydrolipoamide dehy 86.4 4.7 0.0001 38.4 9.2 102 48-197 230-337 (466)
70 TIGR01292 TRX_reduct thioredox 86.0 1.3 2.9E-05 38.6 4.9 40 47-87 71-110 (300)
71 PRK01747 mnmC bifunctional tRN 85.9 1.4 3.1E-05 44.0 5.6 43 47-89 421-463 (662)
72 TIGR03219 salicylate_mono sali 85.7 1.6 3.5E-05 40.6 5.5 43 48-90 118-160 (414)
73 PRK08244 hypothetical protein; 85.7 5.3 0.00012 38.2 9.2 47 48-94 115-165 (493)
74 PRK07588 hypothetical protein; 85.3 1.7 3.6E-05 40.1 5.4 43 46-88 115-157 (391)
75 TIGR01423 trypano_reduc trypan 85.2 5.5 0.00012 38.4 9.1 103 48-197 246-350 (486)
76 KOG4254 Phytoene desaturase [C 84.7 10 0.00023 36.6 10.3 50 48-97 279-330 (561)
77 PF13434 K_oxygenase: L-lysine 84.7 1.4 3E-05 40.6 4.4 38 48-85 294-337 (341)
78 PRK06847 hypothetical protein; 84.6 1.9 4.1E-05 39.3 5.4 42 48-89 122-163 (375)
79 TIGR01377 soxA_mon sarcosine o 84.5 1.8 3.9E-05 39.4 5.2 40 48-88 160-199 (380)
80 TIGR02352 thiamin_ThiO glycine 84.4 2.4 5.2E-05 37.7 5.9 139 48-196 152-334 (337)
81 TIGR01789 lycopene_cycl lycope 84.3 8.2 0.00018 35.8 9.5 59 14-88 78-137 (370)
82 PRK12775 putative trifunctiona 83.6 2.4 5.3E-05 44.7 6.2 39 164-202 718-757 (1006)
83 PRK11728 hydroxyglutarate oxid 83.5 2.1 4.6E-05 39.6 5.2 41 48-89 164-204 (393)
84 PRK07236 hypothetical protein; 82.4 2.5 5.5E-05 38.9 5.3 39 48-86 113-151 (386)
85 TIGR03862 flavo_PP4765 unchara 82.1 2.5 5.4E-05 39.6 5.1 39 47-87 100-139 (376)
86 PRK05976 dihydrolipoamide dehy 81.9 11 0.00024 35.9 9.6 102 48-197 236-342 (472)
87 PRK05732 2-octaprenyl-6-methox 81.8 2.7 5.9E-05 38.5 5.3 41 48-88 128-168 (395)
88 PRK04965 NADH:flavorubredoxin 81.3 2.8 6.1E-05 38.6 5.2 99 48-197 198-301 (377)
89 PRK00711 D-amino acid dehydrog 80.6 3.2 6.9E-05 38.4 5.3 141 48-197 216-401 (416)
90 PRK13339 malate:quinone oxidor 80.5 2.9 6.2E-05 40.7 5.1 43 47-89 199-247 (497)
91 COG0579 Predicted dehydrogenas 80.5 4.4 9.4E-05 38.7 6.2 41 47-87 167-209 (429)
92 TIGR01316 gltA glutamate synth 80.3 2.6 5.6E-05 40.1 4.6 36 164-199 413-449 (449)
93 PRK05714 2-octaprenyl-3-methyl 80.2 3.2 6.9E-05 38.4 5.2 47 48-94 127-174 (405)
94 PRK07333 2-octaprenyl-6-methox 80.0 3.6 7.8E-05 37.8 5.4 48 47-94 125-173 (403)
95 PRK12769 putative oxidoreducta 79.9 2.7 5.9E-05 42.0 4.8 37 164-200 615-652 (654)
96 PRK09126 hypothetical protein; 79.8 3.3 7.2E-05 38.0 5.1 42 47-88 125-166 (392)
97 PRK15317 alkyl hydroperoxide r 79.6 3.6 7.8E-05 39.8 5.4 40 48-87 281-320 (517)
98 PRK12810 gltD glutamate syntha 79.6 3.7 8E-05 39.3 5.5 37 164-200 428-465 (471)
99 PRK12831 putative oxidoreducta 79.3 3 6.5E-05 39.9 4.7 37 164-200 424-461 (464)
100 PRK06753 hypothetical protein; 79.2 3.7 8E-05 37.4 5.2 41 48-88 111-151 (373)
101 PRK13984 putative oxidoreducta 79.1 2.9 6.2E-05 41.3 4.7 37 164-200 566-602 (604)
102 TIGR00275 flavoprotein, HI0933 79.0 4.2 9.1E-05 38.1 5.6 39 48-87 120-158 (400)
103 TIGR01317 GOGAT_sm_gam glutama 78.8 3.7 8.1E-05 39.5 5.3 38 164-201 442-480 (485)
104 TIGR01988 Ubi-OHases Ubiquinon 78.7 3.6 7.8E-05 37.3 5.0 41 48-88 122-162 (385)
105 PRK12770 putative glutamate sy 77.7 3.9 8.5E-05 37.3 4.9 36 164-199 313-349 (352)
106 PLN02661 Putative thiazole syn 77.6 3.2 7E-05 38.6 4.3 55 165-219 285-347 (357)
107 TIGR03140 AhpF alkyl hydropero 77.5 4.4 9.6E-05 39.2 5.4 41 48-88 282-322 (515)
108 PRK08020 ubiF 2-octaprenyl-3-m 77.0 4.5 9.7E-05 37.1 5.1 43 47-89 127-169 (391)
109 PRK07846 mycothione reductase; 76.9 4.9 0.00011 38.2 5.5 103 48-197 221-324 (451)
110 PRK08849 2-octaprenyl-3-methyl 75.5 4.8 0.0001 37.1 4.9 44 47-90 125-168 (384)
111 PRK08163 salicylate hydroxylas 75.1 5.1 0.00011 36.8 4.9 43 47-89 124-166 (396)
112 PRK06416 dihydrolipoamide dehy 75.0 5.4 0.00012 37.8 5.2 102 48-197 228-333 (462)
113 PRK12809 putative oxidoreducta 74.9 4.1 8.8E-05 40.7 4.5 37 164-200 598-635 (639)
114 PRK12814 putative NADPH-depend 74.7 6.2 0.00013 39.5 5.7 39 164-202 464-503 (652)
115 TIGR03452 mycothione_red mycot 74.5 6 0.00013 37.6 5.4 103 48-197 224-327 (452)
116 PRK05868 hypothetical protein; 74.0 6.3 0.00014 36.4 5.2 49 46-94 117-166 (372)
117 PLN02507 glutathione reductase 73.3 7 0.00015 37.8 5.5 102 48-197 259-362 (499)
118 TIGR01318 gltD_gamma_fam gluta 73.2 5.7 0.00012 38.0 4.9 37 164-200 429-466 (467)
119 PRK12771 putative glutamate sy 73.2 5.2 0.00011 39.2 4.7 38 164-201 407-445 (564)
120 PRK05257 malate:quinone oxidor 73.0 5.8 0.00012 38.5 4.9 42 48-89 199-246 (494)
121 PRK11749 dihydropyrimidine deh 72.9 6.2 0.00013 37.5 5.0 37 164-200 415-452 (457)
122 PRK07845 flavoprotein disulfid 72.9 7.3 0.00016 37.1 5.5 102 48-197 233-336 (466)
123 PRK06834 hypothetical protein; 72.6 6.8 0.00015 37.8 5.2 42 48-89 115-156 (488)
124 PRK04176 ribulose-1,5-biphosph 72.3 4.7 0.0001 35.5 3.8 37 165-201 212-256 (257)
125 PRK12779 putative bifunctional 72.1 5.2 0.00011 42.0 4.6 38 164-201 590-628 (944)
126 PRK09754 phenylpropionate diox 72.0 7.2 0.00016 36.2 5.1 39 48-87 201-239 (396)
127 PLN02697 lycopene epsilon cycl 71.0 55 0.0012 32.1 11.1 140 48-202 207-413 (529)
128 PF13434 K_oxygenase: L-lysine 70.5 4.8 0.0001 37.1 3.5 38 49-86 111-156 (341)
129 TIGR00292 thiazole biosynthesi 70.4 5.5 0.00012 35.1 3.8 35 165-199 211-253 (254)
130 TIGR03385 CoA_CoA_reduc CoA-di 70.0 8.4 0.00018 36.0 5.1 41 47-87 58-101 (427)
131 PF06039 Mqo: Malate:quinone o 70.0 11 0.00023 36.6 5.7 50 47-97 196-251 (488)
132 PRK12778 putative bifunctional 70.0 6.4 0.00014 40.1 4.6 37 164-200 713-750 (752)
133 COG2072 TrkA Predicted flavopr 69.2 8 0.00017 36.9 4.9 40 48-87 99-142 (443)
134 PRK09564 coenzyme A disulfide 68.4 9.3 0.0002 35.8 5.1 42 47-88 70-114 (444)
135 TIGR01292 TRX_reduct thioredox 68.3 6.8 0.00015 34.0 3.9 35 164-198 263-299 (300)
136 TIGR01320 mal_quin_oxido malat 67.1 10 0.00022 36.6 5.1 42 48-89 193-240 (483)
137 PRK07190 hypothetical protein; 66.8 11 0.00025 36.2 5.4 43 48-90 124-166 (487)
138 TIGR03862 flavo_PP4765 unchara 66.8 7.8 0.00017 36.3 4.1 36 164-199 334-375 (376)
139 PRK09754 phenylpropionate diox 66.8 9.8 0.00021 35.3 4.8 41 46-88 71-111 (396)
140 TIGR02374 nitri_red_nirB nitri 66.7 7.8 0.00017 39.7 4.5 40 47-88 68-107 (785)
141 PRK12266 glpD glycerol-3-phosp 66.6 10 0.00023 36.6 5.2 43 47-89 169-216 (508)
142 PRK08013 oxidoreductase; Provi 66.5 9.9 0.00021 35.2 4.8 43 47-89 126-168 (400)
143 PTZ00363 rab-GDP dissociation 66.2 12 0.00026 35.8 5.4 39 48-86 247-287 (443)
144 COG3486 IucD Lysine/ornithine 66.0 8.4 0.00018 36.6 4.2 42 47-88 292-339 (436)
145 COG1233 Phytoene dehydrogenase 65.9 12 0.00025 36.1 5.3 48 48-95 239-287 (487)
146 COG2509 Uncharacterized FAD-de 65.4 11 0.00024 36.3 4.9 40 48-87 188-228 (486)
147 PRK08010 pyridine nucleotide-d 65.4 12 0.00025 35.3 5.1 102 48-197 214-316 (441)
148 PRK06617 2-octaprenyl-6-methox 65.0 13 0.00028 34.1 5.2 41 48-89 120-160 (374)
149 PRK10157 putative oxidoreducta 64.9 14 0.0003 34.9 5.5 42 47-88 122-163 (428)
150 PRK07251 pyridine nucleotide-d 64.7 13 0.00028 35.0 5.3 38 48-86 213-250 (438)
151 TIGR02462 pyranose_ox pyranose 64.6 18 0.00038 35.7 6.3 51 46-96 227-286 (544)
152 PRK13369 glycerol-3-phosphate 64.5 12 0.00026 36.0 5.1 42 48-89 170-215 (502)
153 PF00732 GMC_oxred_N: GMC oxid 64.1 16 0.00036 32.0 5.6 51 47-97 207-266 (296)
154 PRK04965 NADH:flavorubredoxin 64.0 12 0.00027 34.3 4.9 39 47-88 72-110 (377)
155 PRK07608 ubiquinone biosynthes 63.9 13 0.00027 34.0 5.0 46 48-94 127-173 (388)
156 PF00070 Pyr_redox: Pyridine n 63.6 11 0.00024 26.5 3.6 27 47-73 54-80 (80)
157 PRK09853 putative selenate red 63.0 14 0.00029 39.2 5.4 37 164-200 805-842 (1019)
158 PRK06184 hypothetical protein; 62.9 15 0.00033 35.2 5.5 43 48-90 124-169 (502)
159 PRK13512 coenzyme A disulfide 62.8 14 0.00031 34.8 5.2 42 47-88 72-116 (438)
160 PRK14694 putative mercuric red 62.7 15 0.00032 35.0 5.3 101 48-197 233-334 (468)
161 COG1635 THI4 Ribulose 1,5-bisp 62.4 7.5 0.00016 34.2 2.9 38 164-201 216-261 (262)
162 PRK10015 oxidoreductase; Provi 61.5 18 0.0004 34.1 5.7 42 47-88 122-163 (429)
163 TIGR03315 Se_ygfK putative sel 61.4 11 0.00023 40.0 4.3 35 164-198 803-838 (1012)
164 KOG1399 Flavin-containing mono 61.1 11 0.00025 36.1 4.2 40 49-88 108-152 (448)
165 PRK09564 coenzyme A disulfide 60.4 13 0.00028 34.9 4.4 39 48-87 206-244 (444)
166 COG0644 FixC Dehydrogenases (f 59.8 16 0.00034 34.0 4.8 43 46-88 108-151 (396)
167 PRK07045 putative monooxygenas 59.4 17 0.00037 33.3 5.0 46 47-92 121-169 (388)
168 TIGR03364 HpnW_proposed FAD de 59.3 13 0.00028 33.7 4.2 43 47-95 160-202 (365)
169 PRK10157 putative oxidoreducta 59.3 13 0.00029 35.0 4.3 37 166-202 294-338 (428)
170 PRK07818 dihydrolipoamide dehy 59.2 18 0.0004 34.3 5.3 103 48-197 228-335 (466)
171 COG2081 Predicted flavoprotein 59.1 11 0.00023 35.8 3.5 36 164-199 366-407 (408)
172 PRK06370 mercuric reductase; V 59.0 21 0.00045 33.9 5.6 102 48-197 227-333 (463)
173 TIGR02028 ChlP geranylgeranyl 58.1 21 0.00045 33.3 5.4 37 166-202 269-311 (398)
174 PLN02927 antheraxanthin epoxid 57.6 20 0.00044 36.2 5.4 41 49-89 208-248 (668)
175 PRK06912 acoL dihydrolipoamide 57.5 22 0.00047 33.8 5.5 102 48-197 226-329 (458)
176 PRK13748 putative mercuric red 56.7 21 0.00046 34.7 5.3 101 48-197 325-427 (561)
177 PRK06475 salicylate hydroxylas 55.8 21 0.00045 33.0 4.9 43 47-89 122-167 (400)
178 TIGR02053 MerA mercuric reduct 55.8 21 0.00045 33.8 5.0 103 48-197 222-328 (463)
179 PRK06996 hypothetical protein; 55.4 22 0.00047 32.9 5.0 47 48-94 130-181 (398)
180 TIGR03169 Nterm_to_SelD pyridi 55.3 16 0.00035 33.1 4.1 36 165-200 270-311 (364)
181 COG1249 Lpd Pyruvate/2-oxoglut 54.2 22 0.00048 34.2 4.9 102 48-197 229-334 (454)
182 TIGR01813 flavo_cyto_c flavocy 53.1 25 0.00054 32.9 5.1 42 48-89 145-192 (439)
183 PTZ00318 NADH dehydrogenase-li 52.8 33 0.00072 32.2 5.8 37 164-200 306-348 (424)
184 PRK06175 L-aspartate oxidase; 52.8 28 0.0006 33.0 5.3 43 47-89 143-189 (433)
185 TIGR02374 nitri_red_nirB nitri 51.9 24 0.00053 36.2 5.1 40 48-87 197-236 (785)
186 TIGR01790 carotene-cycl lycope 50.9 29 0.00062 31.7 5.0 41 48-89 100-141 (388)
187 TIGR02485 CobZ_N-term precorri 50.6 32 0.00068 32.3 5.3 40 48-87 138-181 (432)
188 TIGR03385 CoA_CoA_reduc CoA-di 50.3 20 0.00043 33.5 3.9 38 48-87 194-231 (427)
189 PLN02852 ferredoxin-NADP+ redu 50.2 14 0.0003 35.9 2.8 37 165-201 385-423 (491)
190 PRK06481 fumarate reductase fl 49.9 32 0.0007 33.2 5.4 41 48-88 205-250 (506)
191 PRK11101 glpA sn-glycerol-3-ph 49.9 38 0.00083 33.1 5.9 42 48-89 164-211 (546)
192 TIGR03377 glycerol3P_GlpA glyc 49.7 37 0.0008 32.8 5.7 42 48-89 143-190 (516)
193 PRK14989 nitrite reductase sub 49.4 24 0.00053 36.6 4.6 40 47-88 73-112 (847)
194 PRK15317 alkyl hydroperoxide r 48.7 15 0.00033 35.5 2.9 40 164-203 474-515 (517)
195 PF00890 FAD_binding_2: FAD bi 48.4 35 0.00075 31.6 5.2 46 48-94 156-207 (417)
196 PRK06183 mhpA 3-(3-hydroxyphen 48.4 31 0.00066 33.5 5.0 45 47-91 128-176 (538)
197 TIGR03169 Nterm_to_SelD pyridi 47.8 25 0.00054 31.9 4.1 36 48-87 206-241 (364)
198 PRK10262 thioredoxin reductase 47.3 37 0.00079 30.3 5.0 37 163-199 276-314 (321)
199 PRK12844 3-ketosteroid-delta-1 47.1 25 0.00055 34.5 4.2 38 165-202 506-553 (557)
200 COG0665 DadA Glycine/D-amino a 46.6 46 0.00099 30.1 5.6 42 48-90 172-213 (387)
201 TIGR01810 betA choline dehydro 45.5 34 0.00075 33.1 4.8 50 47-96 208-262 (532)
202 PRK06416 dihydrolipoamide dehy 44.8 32 0.0007 32.5 4.4 37 48-87 107-144 (462)
203 PRK06134 putative FAD-binding 44.4 48 0.001 32.7 5.7 42 48-89 232-278 (581)
204 TIGR01989 COQ6 Ubiquinone bios 44.2 39 0.00084 31.8 4.8 44 47-90 134-184 (437)
205 KOG2404 Fumarate reductase, fl 44.1 23 0.0005 33.1 3.1 51 45-95 157-214 (477)
206 PLN00093 geranylgeranyl diphos 43.9 42 0.00092 32.0 5.1 37 166-202 308-350 (450)
207 TIGR01438 TGR thioredoxin and 43.0 41 0.00088 32.4 4.9 104 48-197 235-343 (484)
208 TIGR03143 AhpF_homolog putativ 43.0 29 0.00063 34.0 3.9 36 164-199 271-308 (555)
209 PRK08274 tricarballylate dehyd 43.0 43 0.00093 31.7 5.0 40 48-87 146-190 (466)
210 COG1249 Lpd Pyruvate/2-oxoglut 42.9 38 0.00083 32.6 4.6 20 111-131 209-228 (454)
211 PRK02106 choline dehydrogenase 42.8 40 0.00088 32.9 4.9 51 46-96 214-269 (560)
212 PRK06292 dihydrolipoamide dehy 42.7 36 0.00077 32.1 4.4 34 164-197 296-330 (460)
213 PF07992 Pyr_redox_2: Pyridine 42.3 25 0.00054 28.5 2.9 43 46-88 71-121 (201)
214 PLN02507 glutathione reductase 41.6 40 0.00087 32.6 4.6 25 63-87 151-177 (499)
215 TIGR03140 AhpF alkyl hydropero 41.6 14 0.0003 35.8 1.4 38 164-201 475-514 (515)
216 PRK08132 FAD-dependent oxidore 41.3 51 0.0011 32.0 5.3 47 48-94 141-191 (547)
217 PRK07818 dihydrolipoamide dehy 41.0 41 0.0009 31.9 4.5 34 55-88 106-146 (466)
218 PRK05335 tRNA (uracil-5-)-meth 40.6 67 0.0014 30.8 5.8 36 164-199 328-363 (436)
219 PRK10015 oxidoreductase; Provi 40.5 40 0.00088 31.8 4.3 36 166-201 294-337 (429)
220 PF01494 FAD_binding_3: FAD bi 40.4 50 0.0011 28.9 4.8 47 48-94 126-178 (356)
221 PRK06481 fumarate reductase fl 40.2 32 0.00069 33.2 3.7 35 165-199 460-503 (506)
222 PRK10262 thioredoxin reductase 39.8 17 0.00037 32.5 1.6 38 49-88 79-116 (321)
223 PRK07121 hypothetical protein; 39.6 31 0.00068 33.0 3.5 33 165-197 448-489 (492)
224 PRK06126 hypothetical protein; 39.4 48 0.001 32.1 4.8 44 47-90 141-189 (545)
225 PTZ00318 NADH dehydrogenase-li 38.9 45 0.00097 31.3 4.3 35 48-86 243-277 (424)
226 PRK06370 mercuric reductase; V 38.6 53 0.0011 31.1 4.8 35 47-87 109-143 (463)
227 TIGR02053 MerA mercuric reduct 38.4 48 0.001 31.4 4.5 20 68-87 118-138 (463)
228 PRK07538 hypothetical protein; 38.1 51 0.0011 30.5 4.6 42 48-89 119-165 (413)
229 PF13450 NAD_binding_8: NAD(P) 37.5 30 0.00066 23.8 2.3 26 3-30 37-64 (68)
230 COG1148 HdrA Heterodisulfide r 37.4 71 0.0015 31.4 5.4 39 165-203 510-548 (622)
231 TIGR02023 BchP-ChlP geranylger 37.2 62 0.0013 29.7 5.0 36 166-201 263-304 (388)
232 PRK12842 putative succinate de 37.0 67 0.0014 31.6 5.4 42 48-89 229-275 (574)
233 PRK14989 nitrite reductase sub 37.0 64 0.0014 33.6 5.4 40 48-87 202-243 (847)
234 PRK13748 putative mercuric red 36.8 47 0.001 32.2 4.3 26 63-88 216-243 (561)
235 TIGR00136 gidA glucose-inhibit 35.9 79 0.0017 31.8 5.7 33 165-197 356-388 (617)
236 PRK06912 acoL dihydrolipoamide 35.9 54 0.0012 31.1 4.4 26 63-88 117-143 (458)
237 PRK06292 dihydrolipoamide dehy 35.5 80 0.0017 29.7 5.5 40 48-87 224-266 (460)
238 KOG1346 Programmed cell death 34.5 22 0.00047 34.3 1.4 42 46-87 406-447 (659)
239 PRK14694 putative mercuric red 34.3 60 0.0013 30.8 4.5 37 48-87 112-150 (468)
240 PRK05675 sdhA succinate dehydr 34.1 53 0.0011 32.4 4.1 36 165-200 361-406 (570)
241 PRK07803 sdhA succinate dehydr 33.9 93 0.002 31.0 5.9 42 48-89 166-213 (626)
242 PRK07121 hypothetical protein; 33.9 84 0.0018 30.0 5.5 43 48-90 192-240 (492)
243 PLN02546 glutathione reductase 33.5 61 0.0013 32.0 4.5 34 164-197 378-412 (558)
244 TIGR01438 TGR thioredoxin and 33.3 68 0.0015 30.8 4.7 23 65-87 129-153 (484)
245 PRK07512 L-aspartate oxidase; 33.1 56 0.0012 31.7 4.1 43 47-89 151-197 (513)
246 TIGR00275 flavoprotein, HI0933 33.0 33 0.00072 32.0 2.5 29 164-192 365-399 (400)
247 PRK09231 fumarate reductase fl 33.0 2.2E+02 0.0047 28.2 8.2 37 164-200 369-415 (582)
248 PF01134 GIDA: Glucose inhibit 32.9 61 0.0013 30.6 4.2 36 164-199 353-388 (392)
249 PRK12839 hypothetical protein; 32.8 46 0.001 32.8 3.5 33 165-197 524-566 (572)
250 PTZ00306 NADH-dependent fumara 32.7 48 0.001 35.8 3.8 37 165-201 859-904 (1167)
251 PF03486 HI0933_like: HI0933-l 32.4 41 0.00088 31.9 2.9 30 164-193 373-408 (409)
252 PRK12842 putative succinate de 32.2 54 0.0012 32.2 3.9 35 165-199 523-567 (574)
253 PRK06263 sdhA succinate dehydr 32.2 52 0.0011 32.1 3.7 37 164-200 359-404 (543)
254 PRK12834 putative FAD-binding 32.2 50 0.0011 32.2 3.6 33 165-197 503-548 (549)
255 PTZ00058 glutathione reductase 31.7 94 0.002 30.7 5.5 39 48-86 293-333 (561)
256 PRK12843 putative FAD-binding 31.7 89 0.0019 30.8 5.3 43 48-90 236-283 (578)
257 PRK07843 3-ketosteroid-delta-1 31.5 96 0.0021 30.4 5.5 44 47-90 222-270 (557)
258 PRK05945 sdhA succinate dehydr 31.5 1.7E+02 0.0037 28.7 7.3 36 165-200 369-414 (575)
259 COG1251 NirB NAD(P)H-nitrite r 31.3 58 0.0013 33.4 3.9 41 47-89 73-113 (793)
260 PRK06134 putative FAD-binding 30.9 51 0.0011 32.5 3.4 35 165-199 527-571 (581)
261 PF07156 Prenylcys_lyase: Pren 30.9 88 0.0019 29.2 4.8 43 48-91 140-189 (368)
262 PRK08641 sdhA succinate dehydr 30.8 60 0.0013 32.1 3.9 36 164-199 366-410 (589)
263 PF01134 GIDA: Glucose inhibit 30.8 96 0.0021 29.3 5.1 39 48-87 111-150 (392)
264 PRK08274 tricarballylate dehyd 30.7 51 0.0011 31.1 3.4 35 165-199 417-461 (466)
265 PRK13512 coenzyme A disulfide 30.7 74 0.0016 30.0 4.4 36 48-87 204-239 (438)
266 KOG1346 Programmed cell death 30.6 61 0.0013 31.4 3.7 49 46-96 270-319 (659)
267 KOG2820 FAD-dependent oxidored 30.6 1.2E+02 0.0027 28.4 5.5 48 48-96 168-218 (399)
268 TIGR00551 nadB L-aspartate oxi 30.5 90 0.002 29.9 5.0 44 47-90 143-190 (488)
269 PRK12835 3-ketosteroid-delta-1 30.5 60 0.0013 32.1 3.9 44 47-90 227-276 (584)
270 PRK07845 flavoprotein disulfid 30.5 76 0.0017 30.2 4.5 40 47-87 106-149 (466)
271 TIGR01790 carotene-cycl lycope 30.4 3.1E+02 0.0067 24.8 8.4 38 165-202 260-303 (388)
272 PRK07846 mycothione reductase; 29.9 82 0.0018 29.9 4.6 20 68-87 119-138 (451)
273 PRK08294 phenol 2-monooxygenas 29.7 2.3E+02 0.005 28.4 7.9 47 48-94 158-216 (634)
274 COG0492 TrxB Thioredoxin reduc 29.6 49 0.0011 30.0 2.9 39 163-201 262-302 (305)
275 COG1252 Ndh NADH dehydrogenase 29.3 62 0.0013 30.8 3.6 38 164-201 289-333 (405)
276 PRK08958 sdhA succinate dehydr 29.0 67 0.0015 31.8 3.9 36 165-200 379-424 (588)
277 TIGR01816 sdhA_forward succina 28.5 73 0.0016 31.3 4.1 36 165-200 352-397 (565)
278 PF03807 F420_oxidored: NADP o 28.5 29 0.00063 24.9 1.0 20 77-96 61-80 (96)
279 TIGR00551 nadB L-aspartate oxi 28.4 63 0.0014 31.0 3.5 36 164-199 344-389 (488)
280 cd01814 NTGP5 Ubiquitin-like N 27.7 27 0.00059 27.2 0.7 18 215-232 7-24 (113)
281 TIGR01812 sdhA_frdA_Gneg succi 27.7 1.2E+02 0.0026 29.6 5.4 42 48-89 144-191 (566)
282 TIGR03143 AhpF_homolog putativ 27.3 1E+02 0.0022 30.2 4.8 39 48-88 75-113 (555)
283 PRK09231 fumarate reductase fl 27.2 1.3E+02 0.0027 29.8 5.5 43 47-89 148-196 (582)
284 TIGR03452 mycothione_red mycot 27.1 94 0.002 29.5 4.5 36 47-87 106-141 (452)
285 PRK06175 L-aspartate oxidase; 27.0 75 0.0016 30.0 3.8 36 164-199 342-387 (433)
286 COG0644 FixC Dehydrogenases (f 27.0 1.3E+02 0.0029 27.7 5.4 38 165-202 267-310 (396)
287 PRK12834 putative FAD-binding 26.8 1.3E+02 0.0029 29.3 5.5 44 47-90 166-228 (549)
288 PRK12835 3-ketosteroid-delta-1 26.8 1.1E+02 0.0024 30.3 4.9 35 165-199 526-570 (584)
289 PRK12837 3-ketosteroid-delta-1 26.5 1.3E+02 0.0028 29.2 5.3 43 47-89 188-235 (513)
290 COG0492 TrxB Thioredoxin reduc 26.2 1.1E+02 0.0025 27.6 4.7 35 54-89 81-115 (305)
291 TIGR02485 CobZ_N-term precorri 26.1 81 0.0018 29.5 3.8 34 165-198 386-429 (432)
292 PRK07843 3-ketosteroid-delta-1 26.0 65 0.0014 31.6 3.2 33 165-197 513-555 (557)
293 PRK08010 pyridine nucleotide-d 25.9 1.1E+02 0.0023 28.8 4.5 36 48-86 92-128 (441)
294 PRK06263 sdhA succinate dehydr 25.9 1.1E+02 0.0024 29.8 4.8 42 48-89 149-197 (543)
295 PRK07803 sdhA succinate dehydr 25.6 1.1E+02 0.0023 30.7 4.7 36 164-199 403-447 (626)
296 COG1233 Phytoene dehydrogenase 25.4 72 0.0016 30.7 3.3 35 164-198 447-482 (487)
297 PLN02546 glutathione reductase 25.4 1.4E+02 0.0031 29.4 5.5 42 48-89 308-350 (558)
298 PRK07804 L-aspartate oxidase; 25.3 1.2E+02 0.0026 29.6 4.9 36 164-199 368-413 (541)
299 TIGR01988 Ubi-OHases Ubiquinon 25.2 99 0.0022 27.8 4.1 36 166-201 275-316 (385)
300 PRK06069 sdhA succinate dehydr 25.1 78 0.0017 31.1 3.6 42 48-89 153-200 (577)
301 KOG1336 Monodehydroascorbate/f 24.9 99 0.0021 30.0 4.1 38 48-87 142-179 (478)
302 PLN02464 glycerol-3-phosphate 24.8 1.8E+02 0.0039 29.1 6.1 42 48-89 247-296 (627)
303 TIGR01811 sdhA_Bsu succinate d 24.8 1.5E+02 0.0033 29.4 5.6 36 164-199 381-425 (603)
304 PRK12844 3-ketosteroid-delta-1 24.8 1.5E+02 0.0032 29.1 5.4 44 47-90 222-270 (557)
305 PRK09126 hypothetical protein; 24.7 88 0.0019 28.5 3.7 35 166-200 279-319 (392)
306 PRK06854 adenylylsulfate reduc 24.7 1.5E+02 0.0032 29.5 5.5 42 48-89 148-195 (608)
307 COG2303 BetA Choline dehydroge 24.4 1.4E+02 0.0031 29.3 5.2 51 46-96 216-273 (542)
308 PRK09078 sdhA succinate dehydr 24.4 98 0.0021 30.7 4.2 36 165-200 384-429 (598)
309 PRK08626 fumarate reductase fl 24.3 85 0.0018 31.6 3.7 43 48-90 173-221 (657)
310 PRK08243 4-hydroxybenzoate 3-m 23.6 1.3E+02 0.0027 27.7 4.5 33 167-199 279-317 (392)
311 PRK05945 sdhA succinate dehydr 23.2 1.3E+02 0.0028 29.6 4.7 42 48-89 150-197 (575)
312 KOG4716 Thioredoxin reductase 22.6 83 0.0018 29.7 3.0 34 164-197 329-364 (503)
313 PRK07573 sdhA succinate dehydr 22.5 1.9E+02 0.004 29.1 5.7 43 48-90 185-233 (640)
314 PRK08071 L-aspartate oxidase; 22.3 1.2E+02 0.0027 29.2 4.4 43 47-89 143-190 (510)
315 PTZ00139 Succinate dehydrogena 22.3 1.1E+02 0.0023 30.6 3.9 35 165-199 401-445 (617)
316 PRK08205 sdhA succinate dehydr 22.2 1.2E+02 0.0025 30.0 4.2 35 165-199 374-418 (583)
317 PRK08401 L-aspartate oxidase; 22.1 1.5E+02 0.0033 28.2 4.9 35 164-198 321-365 (466)
318 TIGR01812 sdhA_frdA_Gneg succi 22.1 1E+02 0.0023 30.0 3.8 37 164-200 357-403 (566)
319 TIGR01811 sdhA_Bsu succinate d 22.0 3.3E+02 0.0072 27.1 7.3 41 47-87 147-194 (603)
320 PRK06069 sdhA succinate dehydr 22.0 1.7E+02 0.0036 28.8 5.2 34 166-199 371-414 (577)
321 PRK08626 fumarate reductase fl 21.7 1.8E+02 0.0039 29.3 5.5 36 165-200 385-430 (657)
322 PLN00128 Succinate dehydrogena 21.7 1.3E+02 0.0027 30.3 4.3 36 165-200 422-467 (635)
323 PRK12845 3-ketosteroid-delta-1 21.6 1E+02 0.0023 30.3 3.7 32 165-196 521-562 (564)
324 COG1252 Ndh NADH dehydrogenase 21.4 2.2E+02 0.0048 27.0 5.7 33 55-89 79-111 (405)
325 TIGR01816 sdhA_forward succina 21.4 1.9E+02 0.0041 28.4 5.5 43 48-90 134-182 (565)
326 PTZ00058 glutathione reductase 21.4 1.4E+02 0.0031 29.5 4.6 35 163-197 362-431 (561)
327 PRK12843 putative FAD-binding 21.2 1.1E+02 0.0024 30.1 3.8 35 165-199 528-572 (578)
328 PRK08071 L-aspartate oxidase; 21.2 94 0.002 30.1 3.3 36 164-199 343-388 (510)
329 PRK06452 sdhA succinate dehydr 21.2 1.2E+02 0.0026 29.8 4.1 42 48-89 151-198 (566)
330 PRK08275 putative oxidoreducta 21.0 1.3E+02 0.0028 29.4 4.2 36 164-199 367-404 (554)
331 PRK06126 hypothetical protein; 21.0 3E+02 0.0066 26.5 6.8 32 166-197 302-339 (545)
332 PTZ00153 lipoamide dehydrogena 21.0 1.5E+02 0.0034 29.9 4.8 38 48-85 369-423 (659)
333 PRK11749 dihydropyrimidine deh 20.9 1.6E+02 0.0034 27.9 4.7 40 48-87 326-385 (457)
334 PRK12837 3-ketosteroid-delta-1 20.6 94 0.002 30.1 3.1 32 165-196 468-509 (513)
335 PRK05732 2-octaprenyl-6-methox 20.6 1.5E+02 0.0033 26.8 4.4 35 166-200 281-321 (395)
336 COG4187 RocB Arginine degradat 20.5 1.1E+02 0.0024 29.7 3.4 21 208-228 197-218 (553)
337 TIGR00292 thiazole biosynthesi 20.3 1.9E+02 0.0041 25.3 4.7 40 48-87 115-168 (254)
338 PF06267 DUF1028: Family of un 20.2 1.7E+02 0.0036 24.9 4.2 48 166-213 108-165 (190)
339 cd07387 MPP_PolD2_C PolD2 (DNA 20.2 85 0.0018 27.9 2.5 31 145-175 173-212 (257)
340 COG0446 HcaD Uncharacterized N 20.1 1.4E+02 0.0031 26.8 4.1 40 48-87 193-235 (415)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=274.51 Aligned_cols=194 Identities=28% Similarity=0.458 Sum_probs=164.8
Q ss_pred CcccccCCCCceeccCCceeeeCChhHHh----HHHcCceeccccC-------------------CCCcc----------
Q 043717 1 MGTRMIGPQPLIFDHAAQFFTVTDSRFMS----WLMVGWREVWCDH-------------------GKTSM---------- 47 (246)
Q Consensus 1 matrR~~~~~~~~DhGAqyft~~~~~f~~----~~~~g~~~~W~~~-------------------g~p~m---------- 47 (246)
|||||++++ .||||||||+++++.|.. |.++|++++|... |.|+|
T Consensus 40 lAtRRl~~g--~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtd 117 (331)
T COG3380 40 LATRRLDGG--RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATD 117 (331)
T ss_pred hheeccCCc--cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCCCCCCCCccccCcchHHHHHHHhcc
Confidence 799999976 599999999999999977 8999999999521 45788
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc-eeeccCEEEEcCCHHHHHHhhccCC--hHH-HHHHhh----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK-PRGQFDVVVIAHNGKCANWLLGSSG--LPQ-IARQMK---------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g-~~~~aD~VVlA~Pa~~A~~LL~~~~--~~~-la~~L~---------------- 107 (246)
++|++++||+.|.+.++.|+|.++++ +...||.||||.|+||++.||.... .+. +...+.
T Consensus 118 L~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q 197 (331)
T COG3380 118 LTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQ 197 (331)
T ss_pred chhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCc
Confidence 69999999999999999999998544 6678999999999999999996521 222 221111
Q ss_pred --------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCcee
Q 043717 108 --------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYT 143 (246)
Q Consensus 108 --------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~ 143 (246)
+.|.+.++|.++..+...+.++.+- .+++|.+.
T Consensus 198 ~l~~P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~---~~~~p~~s 274 (331)
T COG3380 198 PLDRPWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGD---RLPEPDWS 274 (331)
T ss_pred cCCCCCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCC---CCCcchHH
Confidence 3466788999998888888888873 35689999
Q ss_pred eeeecCccCCCCCCCCCCcc-CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 144 RVHLWGAALPTNTPSIPCIF-DPHGRAGICGNWLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 144 ~v~RW~~A~P~~~~g~~~~~-~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.+|||+||+|+...+.+++. +...+||+|||||.|+++|+|+.||.++|++|++.|
T Consensus 275 ~~H~WrYA~P~~~~~~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 275 DAHRWRYAIPNDAVAGPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred HhhccccccccccccCCccccCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence 99999999999999988888 788899999999999999999999999999998754
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.84 E-value=7.5e-20 Score=172.37 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=120.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh--------------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK-------------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~-------------------- 107 (246)
.+|+++++|++|+..+++|.|.+++|..+.||+||+|+|++++..||+... +.....+.
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~-~~~~~~l~~l~~~~~~~v~l~~~~~~~~ 316 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSELS-NSASSHLDKIHSPPVANVNLGFPEGSVD 316 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcccC-HHHHHHHhcCCCCceEEEEEEEchHHcC
Confidence 469999999999999999999876666789999999999999999997542 12111111
Q ss_pred ------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCC
Q 043717 108 ------------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQK 139 (246)
Q Consensus 108 ------------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~ 139 (246)
..+.+.+++++++.++++|+++++++. .
T Consensus 317 ~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~----~ 392 (462)
T TIGR00562 317 GELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINN----E 392 (462)
T ss_pred CCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCC----C
Confidence 011245889999999999999999753 5
Q ss_pred CceeeeeecCccCCCCCCCCCC--------ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 140 PIYTRVHLWGAALPTNTPSIPC--------IFDPHGRAGICGNWLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 140 p~~~~v~RW~~A~P~~~~g~~~--------~~~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
|.++.++||++|+|+|.+|+.. +....++|++||||+.|.+||+||.||+++|++|++.+
T Consensus 393 p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 393 PEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999742 22346899999999999999999999999999998765
No 3
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.81 E-value=6.4e-19 Score=166.60 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=118.9
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh---------------------
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK--------------------- 107 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~--------------------- 107 (246)
+|+++++|++|+..+++|.|.+.++..+.||+||+|+|++++..|+.....+.....+.
T Consensus 240 ~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 319 (463)
T PRK12416 240 VVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDILDEQLPAD 319 (463)
T ss_pred cEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCCcchhHHHhcCCCCceEEEEEEechhhcCCCCC
Confidence 69999999999999999999876665678999999999999999987432211110000
Q ss_pred ----------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCc
Q 043717 108 ----------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPI 141 (246)
Q Consensus 108 ----------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~ 141 (246)
+...+.++|++.+.++++|+++||+.. +|.
T Consensus 320 g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~----~p~ 395 (463)
T PRK12416 320 GTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG----EPE 395 (463)
T ss_pred ceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC----Cce
Confidence 001134789999999999999999753 789
Q ss_pred eeeeeecCccCCCCCCCCC--------CccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 142 YTRVHLWGAALPTNTPSIP--------CIFDPHGRAGICGNWLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 142 ~~~v~RW~~A~P~~~~g~~--------~~~~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.+.++||++++|+|.++|. .+....++|++||||+.|.+||+||+||+++|++|++.+
T Consensus 396 ~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 396 VVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred EEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999873 223456899999999999999999999999999998754
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=99.75 E-value=2.7e-17 Score=156.67 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=117.1
Q ss_pred eeecCceeeEEEEeCCe-EEEEeC--Cc-eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh-----------------
Q 043717 49 SIVRPCWISNLEPFNGM-WHLREN--VK-PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK----------------- 107 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~-w~l~~~--~g-~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~----------------- 107 (246)
+|++|++|++|++.+++ |.|+.. ++ ..+.||+||+|+|++++..|+.... +.+...+.
T Consensus 253 ~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~-~~~~~~l~~~~~~~~~~v~l~~~~~ 331 (496)
T PLN02576 253 KVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS-PAAADALPEFYYPPVAAVTTSYPKE 331 (496)
T ss_pred cEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC-HHHHHHhccCCCCceEEEEEEEchH
Confidence 59999999999998776 887652 33 4679999999999999999987431 21111000
Q ss_pred ---------------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHh
Q 043717 108 ---------------------------------------------------------ENIPTATAEKVKKGMLEGVEAAL 130 (246)
Q Consensus 108 ---------------------------------------------------------~~~~~~~~eel~~~ll~eL~~ll 130 (246)
..+.+.+++++++.++++|++++
T Consensus 332 ~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~ 411 (496)
T PLN02576 332 AVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLL 411 (496)
T ss_pred HcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 00113568999999999999999
Q ss_pred CCCCCCCCCCceeeeeecCccCCCCCCCCCCcc-------CCC--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 131 GRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIF-------DPH--GRAGICGNWLLGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 131 g~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~-------~~~--~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
|.+. ...|....+++|++|+|+|.+|+.... +.. ++|++||||+.|++|++||+||+++|++|+..+.+
T Consensus 412 g~~~--~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 412 LKPG--APPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred CCCC--CCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 8642 136788889999999999999985321 333 79999999999999999999999999999987654
Q ss_pred C
Q 043717 202 G 202 (246)
Q Consensus 202 ~ 202 (246)
.
T Consensus 490 ~ 490 (496)
T PLN02576 490 S 490 (496)
T ss_pred c
Confidence 4
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.69 E-value=4.1e-16 Score=145.98 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=114.6
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh---------------------
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK--------------------- 107 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~--------------------- 107 (246)
+|+++++|++|...+++|.|.+++|..+.||+||+|+|++++.+|+.+.........+.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 314 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESATNLPDG 314 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccChhHHHHHhCCCCCceEEEEEEeccccCCCCCc
Confidence 69999999999999889998876666789999999999999999976421111110000
Q ss_pred -------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceee
Q 043717 108 -------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTR 144 (246)
Q Consensus 108 -------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~ 144 (246)
....+.+++++++.++++|++++|.+. .|..+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~----~~~~~~ 390 (451)
T PRK11883 315 TGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG----DPEFTI 390 (451)
T ss_pred eEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC----CceEEE
Confidence 001235689999999999999998643 678899
Q ss_pred eeecCccCCCCCCCCCCc----c---CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 145 VHLWGAALPTNTPSIPCI----F---DPHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 145 v~RW~~A~P~~~~g~~~~----~---~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
++||+++.|.+.+++... . ...++|++||||+.|.+|++|++||+.+|++|++
T Consensus 391 ~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 391 VQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred EeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999886321 1 1256999999999999999999999999999875
No 6
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.68 E-value=5e-16 Score=146.33 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=117.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh--------------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK-------------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~-------------------- 107 (246)
.+|+++++|+.|.+.+.++.+.++++..+.||.||+|+|++...+||+.......+..+.
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~ 306 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKELQYTSVVTVVVGLDEKDNPALP 306 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhccccceEEEEEEeccccccCCC
Confidence 468999999999999777777677776789999999999999999999732111111111
Q ss_pred --------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCcee
Q 043717 108 --------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYT 143 (246)
Q Consensus 108 --------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~ 143 (246)
+.....++|++++.++++|.+++++.. +|.++
T Consensus 307 ~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~----~~~~~ 382 (444)
T COG1232 307 DGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGING----DPVFV 382 (444)
T ss_pred CceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCc----chhhe
Confidence 001134689999999999999999864 77899
Q ss_pred eeeecCccCCCCCCCCCCc--------cCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 043717 144 RVHLWGAALPTNTPSIPCI--------FDPHGRAGICGNWLLGSSVESAALSGMALANHIA 196 (246)
Q Consensus 144 ~v~RW~~A~P~~~~g~~~~--------~~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~ 196 (246)
.++||++++|+|.+||... ...+|||.++|.|+.|+++++||.+|..+|++|+
T Consensus 383 ~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 383 EVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred eeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999998532 2355999999999999999999999999999886
No 7
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.62 E-value=1.1e-14 Score=134.47 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=110.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEe-CCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh-------------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE-NVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK------------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~-~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~------------------- 107 (246)
++|+++++|++|...+++|.+.. .++..+.||+||+|+|++++..||+..........+.
T Consensus 212 ~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~ 291 (419)
T TIGR03467 212 GEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAVRLPA 291 (419)
T ss_pred CEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCcCCCC
Confidence 47999999999999888865533 3445678999999999999999997521111111111
Q ss_pred ---------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCC
Q 043717 108 ---------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPT 154 (246)
Q Consensus 108 ---------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~ 154 (246)
..+.+.+++++.+.++++|++++|... ...|.+.++.+|.++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 369 (419)
T TIGR03467 292 PMVGLVGGLAQWLFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVA--GAKPLWARVIKEKRATFA 369 (419)
T ss_pred CeeeecCCceeEEEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccc--cCCccceEEEEccCCccc
Confidence 112246889999999999999998531 125677788888888877
Q ss_pred CCCCCC----CccCCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHHHHH
Q 043717 155 NTPSIP----CIFDPHGRAGICGNWLLGS---SVESAALSGMALANHIAD 197 (246)
Q Consensus 155 ~~~g~~----~~~~~~~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~~ 197 (246)
+.+++. .+.++.++|++||||+.++ ++|+|++||.++|++|++
T Consensus 370 ~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 370 ATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 766643 2345678999999999875 899999999999998863
No 8
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.51 E-value=2.2e-13 Score=123.90 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=105.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHH--hhccCChHH-HHHHhh-----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANW--LLGSSGLPQ-IARQMK----------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~--LL~~~~~~~-la~~L~----------------- 107 (246)
.+|+++++|++|+..++++.|.+.++..+.||+||+|+|...+.. +++.. +. ....+.
T Consensus 224 ~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~~~~~~v~l~~~~~ 301 (450)
T PF01593_consen 224 GEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPYSSVSKVFLGFDRP 301 (450)
T ss_dssp GGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEEEEEEEEEEEESSG
T ss_pred ceeecCCcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccc--cccccccccccccCcceeEEEeeecc
Confidence 379999999999999999999887776889999999999999985 44432 22 111111
Q ss_pred ------------------------------h-----------------hCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 043717 108 ------------------------------E-----------------NIPTATAEKVKKGMLEGVEAALGRPKGSLQKP 140 (246)
Q Consensus 108 ------------------------------~-----------------~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p 140 (246)
. .....+++++.+.++++|+++++.. ..+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~--~~~~~ 379 (450)
T PF01593_consen 302 FWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGA--SIPDP 379 (450)
T ss_dssp GGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTG--GGGEE
T ss_pred cccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccc--ccccc
Confidence 0 0124678999999999999999841 12356
Q ss_pred ceeeeeecCc-cCCCCCCCCC----C------ccCCC-CCEEEEcCCCCCC---CHHHHHHHHHHHHHHHH
Q 043717 141 IYTRVHLWGA-ALPTNTPSIP----C------IFDPH-GRAGICGNWLLGS---SVESAALSGMALANHIA 196 (246)
Q Consensus 141 ~~~~v~RW~~-A~P~~~~g~~----~------~~~~~-~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~ 196 (246)
..+.+++|.. ..+.+..... . +..+. +||++||||+.++ ++|+|+.||+.+|++|+
T Consensus 380 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 380 IDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 6677899987 5555433221 1 12344 7999999999866 99999999999999986
No 9
>PRK07233 hypothetical protein; Provisional
Probab=99.49 E-value=1e-12 Score=122.23 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=111.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHh---h-----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQM---K----------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L---~----------------- 107 (246)
++|+++++|++|+..+++|.+...++..+.+|+||+|+|++.+..|++... +.....+ .
T Consensus 213 ~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 291 (434)
T PRK07233 213 GEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP-ADVLARLRRIDYQGVVCMVLKLRRPLTD 291 (434)
T ss_pred ceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc-HHHHhhhcccCccceEEEEEEecCCCCC
Confidence 579999999999988888865444445789999999999999999986432 1111000 0
Q ss_pred -------------------------h----h--------------CCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceee
Q 043717 108 -------------------------E----N--------------IPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTR 144 (246)
Q Consensus 108 -------------------------~----~--------------~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~ 144 (246)
. . ....+++++++.++++|.++++... ...+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~--~~~~~~~~ 369 (434)
T PRK07233 292 YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD--RDDVRAVR 369 (434)
T ss_pred CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC--hhheeeEE
Confidence 0 0 0024678999999999999997211 12567788
Q ss_pred eeecCccCCCCCCCCC----CccCCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 145 VHLWGAALPTNTPSIP----CIFDPHGRAGICGNWLL---GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 145 v~RW~~A~P~~~~g~~----~~~~~~~gL~laGDw~~---G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+.||+++.|.+.+|+. .+....+||++|||++. +.++++|+.||..+|++|++.+.
T Consensus 370 ~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 370 ISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred EEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 9999999999988743 33355689999999643 34999999999999999988764
No 10
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.44 E-value=2.7e-12 Score=122.58 Aligned_cols=147 Identities=17% Similarity=0.075 Sum_probs=107.0
Q ss_pred eeeecCceeeEEEEeC--CeEE-E---EeCCc---eeeccCEEEEcCCHHHHHHhhccCC--hH---HHH----------
Q 043717 48 VSIVRPCWISNLEPFN--GMWH-L---RENVK---PRGQFDVVVIAHNGKCANWLLGSSG--LP---QIA---------- 103 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~--~~w~-l---~~~~g---~~~~aD~VVlA~Pa~~A~~LL~~~~--~~---~la---------- 103 (246)
++|+++++|++|+..+ ++|. + ..+++ ..+.+|+||+|+|++.+.+||++.. .+ .+.
T Consensus 234 g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v 313 (474)
T TIGR02732 234 GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATV 313 (474)
T ss_pred CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEE
Confidence 6899999999998864 3442 3 33222 4578999999999999999997520 00 000
Q ss_pred --------------------------------H----------------Hhh---------------hhCCCCCHHHHHH
Q 043717 104 --------------------------------R----------------QMK---------------ENIPTATAEKVKK 120 (246)
Q Consensus 104 --------------------------------~----------------~L~---------------~~~~~~~~eel~~ 120 (246)
. ... ....+.++++|++
T Consensus 314 ~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 393 (474)
T TIGR02732 314 QLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAK 393 (474)
T ss_pred EEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHH
Confidence 0 000 1122478999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCC----CccCCCCCEEEEcCCCCC---CCHHHHHHHHHHHHH
Q 043717 121 GMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIP----CIFDPHGRAGICGNWLLG---SSVESAALSGMALAN 193 (246)
Q Consensus 121 ~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~----~~~~~~~gL~laGDw~~G---~~ie~Av~SG~~aA~ 193 (246)
.++++|+++++.-. ...+.+..+.|.++|.+...+|.. ...++.+|||+||||+.. .++|+|++||+.+|+
T Consensus 394 ~~~~~L~~~~p~~~--~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~ 471 (474)
T TIGR02732 394 RVDKQVRALFPSSK--NLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAA 471 (474)
T ss_pred HHHHHHHHhCcccc--CCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHH
Confidence 99999999998421 124566679999999988777754 234667899999999998 599999999999999
Q ss_pred HHH
Q 043717 194 HIA 196 (246)
Q Consensus 194 ~l~ 196 (246)
.|+
T Consensus 472 ~i~ 474 (474)
T TIGR02732 472 AIL 474 (474)
T ss_pred HhC
Confidence 773
No 11
>PLN02612 phytoene desaturase
Probab=99.40 E-value=1.2e-11 Score=120.68 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=104.1
Q ss_pred eeeecCceeeEEEEeCCeE--EEEeCCceeeccCEEEEcCCHHHHHHhhccCChH-HHHHHhh-----------------
Q 043717 48 VSIVRPCWISNLEPFNGMW--HLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLP-QIARQMK----------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w--~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~-~la~~L~----------------- 107 (246)
++|+++++|++|...++++ .+.+.+|..+.+|+||+|+|+..+..||+....+ .+...+.
T Consensus 323 ~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~ 402 (567)
T PLN02612 323 GEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRK 402 (567)
T ss_pred CEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcc
Confidence 6899999999999866553 3555556577899999999999998888753101 1111110
Q ss_pred --------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCC---CCCC
Q 043717 108 --------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGS---LQKP 140 (246)
Q Consensus 108 --------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~---~~~p 140 (246)
......++|++++.++++|+++||..... ...+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i 482 (567)
T PLN02612 403 LKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKI 482 (567)
T ss_pred cCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceE
Confidence 00113589999999999999999843100 0112
Q ss_pred ceeeeeecCccCCCCCCCC----CCccCCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHHHHHHhcC
Q 043717 141 IYTRVHLWGAALPTNTPSI----PCIFDPHGRAGICGNWLLG---SSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 141 ~~~~v~RW~~A~P~~~~g~----~~~~~~~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
....+.+.+++...+.++. +....+.++||+||||+.. +++|+|++||+.+|++|++.+..
T Consensus 483 ~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 483 LKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred EEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 2333444454433222322 2334566899999999965 59999999999999999988755
No 12
>PLN02268 probable polyamine oxidase
Probab=99.36 E-value=1.2e-11 Score=116.09 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=106.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHh-hccC-ChHH-HHHHhh-----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWL-LGSS-GLPQ-IARQMK----------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~L-L~~~-~~~~-la~~L~----------------- 107 (246)
++|+++++|++|.+.+++|.|++.++..+.||.||+|+|+..+.++ +... .+|. ....+.
T Consensus 211 ~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~ 290 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSV 290 (435)
T ss_pred CceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCC
Confidence 4799999999999999999998876667899999999999998653 2211 1211 111111
Q ss_pred ------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeee
Q 043717 108 ------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRV 145 (246)
Q Consensus 108 ------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v 145 (246)
......+++++.+.++++|.++++.. ..|..+.+
T Consensus 291 fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~----~~p~~~~~ 366 (435)
T PLN02268 291 FWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDA----TEPVQYLV 366 (435)
T ss_pred CCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCC----CCccEEEe
Confidence 00113678999999999999999742 36888899
Q ss_pred eecC--------ccCCCCCCCCC-----CccCCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHHHHHHh
Q 043717 146 HLWG--------AALPTNTPSIP-----CIFDPHGRAGICGNWLLGS---SVESAALSGMALANHIADYL 199 (246)
Q Consensus 146 ~RW~--------~A~P~~~~g~~-----~~~~~~~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~~~l 199 (246)
++|. |+.+ .+|.. .+..+..+|++||+++... .||+|+.||.++|++|+..|
T Consensus 367 ~~W~~dp~~~G~~~~~--~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 367 SRWGSDPNSLGCYSYD--LVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cccCCCCCCCccCCCC--CCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9998 2222 23321 1235556899999998753 89999999999999998764
No 13
>PLN02487 zeta-carotene desaturase
Probab=99.29 E-value=1.3e-10 Score=113.40 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=110.3
Q ss_pred eeeecCceeeEEEEeC--Ce----EEEEe---CCceeeccCEEEEcCCHHHHHHhhccCC--hHHHHH--Hhh-------
Q 043717 48 VSIVRPCWISNLEPFN--GM----WHLRE---NVKPRGQFDVVVIAHNGKCANWLLGSSG--LPQIAR--QMK------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~--~~----w~l~~---~~g~~~~aD~VVlA~Pa~~A~~LL~~~~--~~~la~--~L~------- 107 (246)
++|+++++|++|...+ ++ +.|.. .++..+.+|+||+|+|++.+.+|++... .+.+.. .|.
T Consensus 310 g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 310 GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEE
Confidence 6999999999999873 33 33444 2234578999999999999999998641 011100 000
Q ss_pred -------------------------------------------------------------------hhCCCCCHHHHHH
Q 043717 108 -------------------------------------------------------------------ENIPTATAEKVKK 120 (246)
Q Consensus 108 -------------------------------------------------------------------~~~~~~~~eel~~ 120 (246)
......++++|++
T Consensus 390 ~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~ 469 (569)
T PLN02487 390 QLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVE 469 (569)
T ss_pred EEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHH
Confidence 0122568999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCC----CccCCCCCEEEEcCCCCCC---CHHHHHHHHHHHHH
Q 043717 121 GMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIP----CIFDPHGRAGICGNWLLGS---SVESAALSGMALAN 193 (246)
Q Consensus 121 ~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~----~~~~~~~gL~laGDw~~G~---~ie~Av~SG~~aA~ 193 (246)
.+.++|+++++... . .++.+..+.+.+.|.....+|.. ...++.+||++||||+..+ ++|+||+||..+|+
T Consensus 470 ~~~~~L~~~~p~~~-~-~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~ 547 (569)
T PLN02487 470 KVHKQVLELFPSSR-G-LEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAA 547 (569)
T ss_pred HHHHHHHHhCcccc-c-CceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHH
Confidence 99999999997532 1 24667788888888887777743 3346778999999999876 99999999999999
Q ss_pred HHHHHh
Q 043717 194 HIADYL 199 (246)
Q Consensus 194 ~l~~~l 199 (246)
.|++.-
T Consensus 548 ~i~~~~ 553 (569)
T PLN02487 548 YICEAG 553 (569)
T ss_pred HHHHHh
Confidence 987643
No 14
>PLN02529 lysine-specific histone demethylase 1
Probab=99.26 E-value=1.1e-10 Score=116.45 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=105.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHh-h--ccCChHH-HHHHhh----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWL-L--GSSGLPQ-IARQMK---------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~L-L--~~~~~~~-la~~L~---------------- 107 (246)
+.|+++++|++|...+++|.|.+++ ..+.||+||+|+|..++.++ + .+. +|. ....+.
T Consensus 367 L~IrLnt~V~~I~~~~dGVtV~t~~-~~~~AD~VIVTVPlgVLk~~~I~F~Pp-LP~~K~~AI~rL~yG~v~KV~L~F~~ 444 (738)
T PLN02529 367 VPIFYGKTVDTIKYGNDGVEVIAGS-QVFQADMVLCTVPLGVLKKRTIRFEPE-LPRRKLAAIDRLGFGLLNKVAMVFPS 444 (738)
T ss_pred CCEEcCCceeEEEEcCCeEEEEECC-EEEEcCEEEECCCHHHHHhccccCCCC-CCHHHHHHHHcCCCceeEEEEEEeCC
Confidence 5799999999999999999997654 46799999999999998743 1 111 111 111111
Q ss_pred -----------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 043717 108 -----------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKP 140 (246)
Q Consensus 108 -----------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p 140 (246)
......+++++++.+++.|++++|.+....+.|
T Consensus 445 ~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~P 524 (738)
T PLN02529 445 VFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDP 524 (738)
T ss_pred ccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCc
Confidence 001136788999999999999997321123467
Q ss_pred ceeeeeecC--------ccCCCCC-CCC--CCccCC-CCCEEEEcCCCCCC---CHHHHHHHHHHHHHHHHHHhcC
Q 043717 141 IYTRVHLWG--------AALPTNT-PSI--PCIFDP-HGRAGICGNWLLGS---SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 141 ~~~~v~RW~--------~A~P~~~-~g~--~~~~~~-~~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
..+.+++|. |+.+... .+. ..+..+ ..+|++||+++... +|++|++||.++|++|++.+.+
T Consensus 525 i~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 525 IQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred eEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 888899998 3432211 010 111222 46899999999764 9999999999999999986643
No 15
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.26 E-value=2.1e-11 Score=113.01 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=111.4
Q ss_pred eeeecCceeeEEEEe-CCeEEEEe--CCc-eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhh----------------
Q 043717 48 VSIVRPCWISNLEPF-NGMWHLRE--NVK-PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMK---------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~-~~~w~l~~--~~g-~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~---------------- 107 (246)
+.|.++-++..+... .++|.+++ .++ .....+.+++|.|++..+.||+.. .+.++..|.
T Consensus 264 v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~-~~sls~~L~ei~y~~V~vVn~~yp~ 342 (491)
T KOG1276|consen 264 VSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGL-QNSLSNALSEIPYVPVAVVNTYYPK 342 (491)
T ss_pred hhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhcccc-chhhhhhhhcCCCCceEEEEEeccC
Confidence 566777777777765 45698876 223 445677777899999999999976 344443222
Q ss_pred --------------h----------------------------------------hCCCCCHHHHHHHHHHHHHHHhCCC
Q 043717 108 --------------E----------------------------------------NIPTATAEKVKKGMLEGVEAALGRP 133 (246)
Q Consensus 108 --------------~----------------------------------------~~~~~~~eel~~~ll~eL~~llg~~ 133 (246)
+ .....+.|++++.+.++|+++|+++
T Consensus 343 ~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~ 422 (491)
T KOG1276|consen 343 EKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGIS 422 (491)
T ss_pred cccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 0113478999999999999999997
Q ss_pred CCCCCCCceeeeeecCccCCCCCCCCCCc-------cCCC--CCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 043717 134 KGSLQKPIYTRVHLWGAALPTNTPSIPCI-------FDPH--GRAGICGNWLLGSSVESAALSGMALANHIA 196 (246)
Q Consensus 134 ~~~~~~p~~~~v~RW~~A~P~~~~g~~~~-------~~~~--~gL~laGDw~~G~~ie~Av~SG~~aA~~l~ 196 (246)
. +|....+|-|+.++|||.+||... .... .+|++||+|+.|++|++||.||..+|..++
T Consensus 423 ~----~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 423 N----KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred C----CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 5 799999999999999999999532 2333 499999999999999999999999987654
No 16
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.23 E-value=1.5e-10 Score=116.30 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=108.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHH----hhccCChHHHHHHhh----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANW----LLGSSGLPQIARQMK---------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~----LL~~~~~~~la~~L~---------------- 107 (246)
+.|+++++|++|...+++|.+..+ |..+.||+||+|+|..++.. +.+... +.....+.
T Consensus 447 L~I~ln~~V~~I~~~~dgV~V~~~-G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP-~~K~~AI~~l~yG~~~KV~L~F~~ 524 (808)
T PLN02328 447 LPIFYERTVESIRYGVDGVIVYAG-GQEFHGDMVLCTVPLGVLKKGSIEFYPELP-QRKKDAIQRLGYGLLNKVALLFPY 524 (808)
T ss_pred CCcccCCeeEEEEEcCCeEEEEeC-CeEEEcCEEEECCCHHHHhhcccccCCCCC-HHHHHHHHcCCCcceEEEEEEeCC
Confidence 579999999999999999988544 45789999999999999863 222221 11111111
Q ss_pred -----------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 043717 108 -----------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKP 140 (246)
Q Consensus 108 -----------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p 140 (246)
......+++++++.+++.|+++|+......+.|
T Consensus 525 ~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P 604 (808)
T PLN02328 525 NFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDP 604 (808)
T ss_pred ccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCc
Confidence 001135788999999999999997321113478
Q ss_pred ceeeeeecCccCCCCC------CCCC-----CccCC--CCCEEEEcCCCCCC---CHHHHHHHHHHHHHHHHHHhcCCCC
Q 043717 141 IYTRVHLWGAALPTNT------PSIP-----CIFDP--HGRAGICGNWLLGS---SVESAALSGMALANHIADYLGSGGV 204 (246)
Q Consensus 141 ~~~~v~RW~~A~P~~~------~g~~-----~~~~~--~~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~~~l~~~~~ 204 (246)
..+.+++|....+.+. +|.. .+..+ ..+|++||+++... +|++|+.||.++|++|+..+.+...
T Consensus 605 ~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~ 684 (808)
T PLN02328 605 VQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684 (808)
T ss_pred ceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence 8899999994333321 2221 11222 35899999998754 9999999999999999987765543
Q ss_pred C
Q 043717 205 R 205 (246)
Q Consensus 205 ~ 205 (246)
.
T Consensus 685 ~ 685 (808)
T PLN02328 685 C 685 (808)
T ss_pred C
Confidence 3
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.23 E-value=2.3e-10 Score=108.02 Aligned_cols=148 Identities=15% Similarity=0.044 Sum_probs=100.0
Q ss_pred eeeecCceeeEEEEeCCe-E-EEEeCCce-----eeccCEEEEcCCHHHHHHhhccCCh-HHHHHHh---h---------
Q 043717 48 VSIVRPCWISNLEPFNGM-W-HLRENVKP-----RGQFDVVVIAHNGKCANWLLGSSGL-PQIARQM---K--------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w-~l~~~~g~-----~~~aD~VVlA~Pa~~A~~LL~~~~~-~~la~~L---~--------- 107 (246)
++|+++++|++|+..+++ + .+.+.++. .+.+|+||+|+|++.+.+||+.... ..+...+ .
T Consensus 228 ~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l 307 (453)
T TIGR02731 228 GEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHI 307 (453)
T ss_pred CEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEE
Confidence 589999999999875444 2 23332222 5789999999999999999874310 1111111 0
Q ss_pred ------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCC--CC
Q 043717 108 ------------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKG--SL 137 (246)
Q Consensus 108 ------------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~--~~ 137 (246)
......++|++.+.++++|++++|...+ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~ 387 (453)
T TIGR02731 308 WFDRKLTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSP 387 (453)
T ss_pred EEccccCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 0001368899999999999999973210 01
Q ss_pred CCCceeeeeecCccCCCCCCCCC----CccCCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHHH
Q 043717 138 QKPIYTRVHLWGAALPTNTPSIP----CIFDPHGRAGICGNWLLG---SSVESAALSGMALANHI 195 (246)
Q Consensus 138 ~~p~~~~v~RW~~A~P~~~~g~~----~~~~~~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l 195 (246)
..+....+.+.+++.+...+|.. .+..+.++|++||||... ++||+||+||.++|+.|
T Consensus 388 ~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 388 AKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 12344556677888754445532 234567899999999863 49999999999999976
No 18
>PRK07208 hypothetical protein; Provisional
Probab=99.15 E-value=4.3e-10 Score=106.83 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=107.5
Q ss_pred eeeecCceeeEEEEeCCeEE--EEe--CCc--eeeccCEEEEcCCHHHHHHhhccCChHHHHHH---hh-----------
Q 043717 48 VSIVRPCWISNLEPFNGMWH--LRE--NVK--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQ---MK----------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~--l~~--~~g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~---L~----------- 107 (246)
++|+++++|++|...+++|. +.. .+| ..+.+|+||+|+|++.+..+|.+...+..... +.
T Consensus 233 ~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~l~~ 312 (479)
T PRK07208 233 GKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDFITVGLLV 312 (479)
T ss_pred CEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCcceeEEEEEEe
Confidence 57999999999999877753 332 223 25789999999999999988863211111111 10
Q ss_pred -----------------------------------h-h---------------CCCCCHHHHHHHHHHHHHHHhCCCCCC
Q 043717 108 -----------------------------------E-N---------------IPTATAEKVKKGMLEGVEAALGRPKGS 136 (246)
Q Consensus 108 -----------------------------------~-~---------------~~~~~~eel~~~ll~eL~~llg~~~~~ 136 (246)
+ . ....+++++++.++++|.++ ++-.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l-~~~~-- 389 (479)
T PRK07208 313 KELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL-GLIR-- 389 (479)
T ss_pred cCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc-CCCC--
Confidence 0 0 01246889999999999996 5311
Q ss_pred CCCCceeeeeecCccCCCCCCCCCCc-------cCCCCCEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHH
Q 043717 137 LQKPIYTRVHLWGAALPTNTPSIPCI-------FDPHGRAGICGNWLL--GSSVESAALSGMALANHIADY 198 (246)
Q Consensus 137 ~~~p~~~~v~RW~~A~P~~~~g~~~~-------~~~~~gL~laGDw~~--G~~ie~Av~SG~~aA~~l~~~ 198 (246)
...|....++||++++|+|.+++... .+..+||++||++.. ..++++|+.||.++|+.|+..
T Consensus 390 ~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 390 PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 13678899999999999999987422 255689999998642 349999999999999988865
No 19
>PLN03000 amine oxidase
Probab=99.09 E-value=3e-09 Score=107.41 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=107.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHH----HhhccCChHHHHHHhh----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCAN----WLLGSSGLPQIARQMK---------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~----~LL~~~~~~~la~~L~---------------- 107 (246)
+.|+++++|++|...+++|.|++.++ .+.||+||+|+|...+. ...++.. +.....+.
T Consensus 391 L~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~~G~l~KViL~Fd~ 468 (881)
T PLN03000 391 VPILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELP-QRKLDCIKRLGFGLLNKVAMLFPY 468 (881)
T ss_pred CCcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCC-HHHHHHHHcCCCcceEEEEEEeCC
Confidence 57999999999999999999987544 67999999999999987 3333321 11111111
Q ss_pred -----------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 043717 108 -----------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKP 140 (246)
Q Consensus 108 -----------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p 140 (246)
......+++++.+.++++|+++|+......++|
T Consensus 469 ~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~P 548 (881)
T PLN03000 469 VFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDP 548 (881)
T ss_pred ccccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCc
Confidence 001136789999999999999997321123478
Q ss_pred ceeeeeecCc---cCCCCC---CCCC-----CccCC--CCCEEEEcCCCCC---CCHHHHHHHHHHHHHHHHHHhcCCC
Q 043717 141 IYTRVHLWGA---ALPTNT---PSIP-----CIFDP--HGRAGICGNWLLG---SSVESAALSGMALANHIADYLGSGG 203 (246)
Q Consensus 141 ~~~~v~RW~~---A~P~~~---~g~~-----~~~~~--~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l~~~l~~~~ 203 (246)
..+.+++|.. +.=.|. +|.. .+..+ ..+|++||+.+.. ++|++|+.||.++|++|+..+....
T Consensus 549 v~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~ 627 (881)
T PLN03000 549 LQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARG 627 (881)
T ss_pred eEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8889999973 221122 2211 11122 3489999998875 4999999999999999998765433
No 20
>PLN02676 polyamine oxidase
Probab=99.05 E-value=4.8e-09 Score=100.64 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=106.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHH-hhccC-ChHHH-HHHhh-----------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANW-LLGSS-GLPQI-ARQMK----------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~-LL~~~-~~~~l-a~~L~----------------- 107 (246)
.+|++|++|++|...++++.|.+.+|.++.+|+||+|+|...... .+... .+|.. ...+.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~ 324 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYK 324 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCC
Confidence 469999999999999899999887777789999999999887754 11110 01110 00000
Q ss_pred --h--------------------------------------------hCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCc
Q 043717 108 --E--------------------------------------------NIPTATAEKVKKGMLEGVEAALGRPKGSLQKPI 141 (246)
Q Consensus 108 --~--------------------------------------------~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~ 141 (246)
+ .....++++..+.+++.|++++|.. ...|.
T Consensus 325 FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~---~~~p~ 401 (487)
T PLN02676 325 FWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPN---IPEAT 401 (487)
T ss_pred CCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCC---CCCcc
Confidence 0 0013567888899999999999842 23677
Q ss_pred eeeeeecCc---cCCC---CCCCCC-----CccCCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 142 YTRVHLWGA---ALPT---NTPSIP-----CIFDPHGRAGICGNWLLG---SSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 142 ~~~v~RW~~---A~P~---~~~g~~-----~~~~~~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
.+..+.|.. +.-. ..+|.. .+..+..+|++||+.+.. +.|++|+.||.++|++|+..+...
T Consensus 402 ~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 402 DILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKK 476 (487)
T ss_pred eEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccC
Confidence 888899953 2211 223321 122455689999998864 499999999999999999887654
No 21
>PLN02976 amine oxidase
Probab=98.93 E-value=3.1e-08 Score=103.72 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=105.9
Q ss_pred eeeecCceeeEEEEe----------CCeEEEEeCCceeeccCEEEEcCCHHHHHH--h-hccCChHHH----HHHhh---
Q 043717 48 VSIVRPCWISNLEPF----------NGMWHLRENVKPRGQFDVVVIAHNGKCANW--L-LGSSGLPQI----ARQMK--- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~----------~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~--L-L~~~~~~~l----a~~L~--- 107 (246)
+.|+++++|+.|... +++|.|.+.+|..+.||+||+|+|...... + +.+. +|.. ...|.
T Consensus 946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPP-LPe~KqaAIqrLgfG~ 1024 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPP-LPDWKYSSIQRLGFGV 1024 (1713)
T ss_pred CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCc-ccHHHHHHHHhhcccc
Confidence 579999999999884 467899887776789999999999988652 1 2111 2221 01110
Q ss_pred ---------------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHh
Q 043717 108 ---------------------------------------------------------ENIPTATAEKVKKGMLEGVEAAL 130 (246)
Q Consensus 108 ---------------------------------------------------------~~~~~~~~eel~~~ll~eL~~ll 130 (246)
......+++++++.+++.|+++|
T Consensus 1025 lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlF 1104 (1713)
T PLN02976 1025 LNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLF 1104 (1713)
T ss_pred ceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHc
Confidence 00013578899999999999999
Q ss_pred CCCCCCCCCCceeeeeecC---ccCCCCC---CCCCC-----ccCC-CCCEEEEcCCCCC---CCHHHHHHHHHHHHHHH
Q 043717 131 GRPKGSLQKPIYTRVHLWG---AALPTNT---PSIPC-----IFDP-HGRAGICGNWLLG---SSVESAALSGMALANHI 195 (246)
Q Consensus 131 g~~~~~~~~p~~~~v~RW~---~A~P~~~---~g~~~-----~~~~-~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l 195 (246)
|.. ..+.|..+.+++|. |+.-.|. +|... +..+ ..+|++||..+.. ++|+|||.||.++|++|
T Consensus 1105 G~~--~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eI 1182 (1713)
T PLN02976 1105 GEA--LVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRI 1182 (1713)
T ss_pred Ccc--cccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHH
Confidence 843 13478888999995 4443332 23211 1122 2359999997643 59999999999999999
Q ss_pred HHHhcCCC
Q 043717 196 ADYLGSGG 203 (246)
Q Consensus 196 ~~~l~~~~ 203 (246)
+..+..++
T Consensus 1183 L~~L~~G~ 1190 (1713)
T PLN02976 1183 IDILNTGN 1190 (1713)
T ss_pred HHHHHccC
Confidence 98887654
No 22
>PLN02568 polyamine oxidase
Probab=98.85 E-value=1.9e-07 Score=90.82 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=102.7
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHH-------hhccCChHHH-HHHhh-------------
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANW-------LLGSSGLPQI-ARQMK------------- 107 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~-------LL~~~~~~~l-a~~L~------------- 107 (246)
+|+++++|+.|+..+++|.|.+.+|....||+||+|+|+..... .+.+. +|.. ...+.
T Consensus 256 ~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~-LP~~k~~Ai~~l~~g~~~Ki~l~ 334 (539)
T PLN02568 256 TIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP-LPDFKTDAISRLGFGVVNKLFVE 334 (539)
T ss_pred EEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC-CCHHHHHHHHhcCCceeeEEEEE
Confidence 59999999999999999999887776789999999999998874 22221 1110 00000
Q ss_pred ---------------------------------------------------------------hhCCCCCHHHHHHHHHH
Q 043717 108 ---------------------------------------------------------------ENIPTATAEKVKKGMLE 124 (246)
Q Consensus 108 ---------------------------------------------------------------~~~~~~~~eel~~~ll~ 124 (246)
......+++++++.+++
T Consensus 335 f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~ 414 (539)
T PLN02568 335 LSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQT 414 (539)
T ss_pred ecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHH
Confidence 00013678899999999
Q ss_pred HHHHHhCCCCC-------------------CCCCCceeeeeecC---ccCCCCC---CCCC-----CccCC---------
Q 043717 125 GVEAALGRPKG-------------------SLQKPIYTRVHLWG---AALPTNT---PSIP-----CIFDP--------- 165 (246)
Q Consensus 125 eL~~llg~~~~-------------------~~~~p~~~~v~RW~---~A~P~~~---~g~~-----~~~~~--------- 165 (246)
.|+++||.... ....|..+.+++|. ++.=.|. +|.. .+..+
T Consensus 415 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~ 494 (539)
T PLN02568 415 TLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQ 494 (539)
T ss_pred HHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCcccccccccc
Confidence 99999983210 01257778889996 2322222 2211 11111
Q ss_pred ----CCCEEEEcCCCCCC---CHHHHHHHHHHHHHHHHHHhc
Q 043717 166 ----HGRAGICGNWLLGS---SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 166 ----~~gL~laGDw~~G~---~ie~Av~SG~~aA~~l~~~l~ 200 (246)
..+|++||..+... +|++|+.||.++|++|++...
T Consensus 495 ~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 495 AGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 12699999988654 899999999999999997653
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.57 E-value=2.1e-06 Score=80.77 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=105.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCCh-HHHHHHhh-------------------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGL-PQIARQMK------------------- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~-~~la~~L~------------------- 107 (246)
-.|.++.+|++|...++++.|++.+.....+|.||+|+|...+.++-=...+ ++....+.
T Consensus 221 ~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 221 TRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred ceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchhh
Confidence 3799999999999999999999877336789999999999888776322111 11111111
Q ss_pred ---------------------h-h---------------------CCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceee
Q 043717 108 ---------------------E-N---------------------IPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTR 144 (246)
Q Consensus 108 ---------------------~-~---------------------~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~ 144 (246)
+ . ....++++.++.++..+.+++|... ....++..
T Consensus 301 ee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a--~~~f~~~~ 378 (450)
T COG1231 301 EEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEA--ADPFDYGA 378 (450)
T ss_pred hhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhh--ccccccce
Confidence 0 0 1135789999999999999998422 12345547
Q ss_pred eeecCccC------CCCCCCC-----CCccCCCCCEEEEc---CCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 145 VHLWGAAL------PTNTPSI-----PCIFDPHGRAGICG---NWLLGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 145 v~RW~~A~------P~~~~g~-----~~~~~~~~gL~laG---Dw~~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.++|..-. ..+++|. +.+.....+|++|| +..-++-+|+||+||.++|.+|...+++
T Consensus 379 ~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 379 SVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred eeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 77886432 1222221 12235678999999 4456889999999999999999887653
No 24
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.39 E-value=5.4e-07 Score=82.27 Aligned_cols=50 Identities=24% Similarity=0.143 Sum_probs=44.7
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCC
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSG 98 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~ 98 (246)
+|++++.|..|.+..+|..|...+|.+..||+||+||.++||+.||.+..
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s 282 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDEPS 282 (447)
T ss_pred eeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCCCC
Confidence 69999999999999999888776676778999999999999999998764
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.33 E-value=1.8e-05 Score=75.63 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred eeeecCceeeEEEEeCCe--EEEEeCC----ceeeccCEEEEcCCHHHHHHhhcc
Q 043717 48 VSIVRPCWISNLEPFNGM--WHLRENV----KPRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~--w~l~~~~----g~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
++|+++++|++|...+++ |.+..++ +..+.+|+||+++|+..+.+||+.
T Consensus 247 ~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~ 301 (492)
T TIGR02733 247 GNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGP 301 (492)
T ss_pred CEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCc
Confidence 589999999999987663 4333333 146789999999999999999874
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.30 E-value=1.8e-05 Score=75.83 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=37.7
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNGKCANW 92 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa~~A~~ 92 (246)
++|+++++|++|...+++ |.|.++++..+.+|.||+|++++.+..
T Consensus 234 ~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 234 GELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYR 279 (502)
T ss_pred CEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHH
Confidence 689999999999987765 677776666779999999999887764
No 27
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.21 E-value=2.2e-05 Score=74.25 Aligned_cols=148 Identities=19% Similarity=0.181 Sum_probs=101.5
Q ss_pred eeecCceeeEEEEeC-CeEEEEeCCceeeccCEEEEcCCHHHHHH----hhccCChHHH-HHHhh---------------
Q 043717 49 SIVRPCWISNLEPFN-GMWHLRENVKPRGQFDVVVIAHNGKCANW----LLGSSGLPQI-ARQMK--------------- 107 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~-~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~----LL~~~~~~~l-a~~L~--------------- 107 (246)
+++++++|..|+..+ +.+.|++.||....||+||+|+|--...+ |+.+. +|.. .+++.
T Consensus 245 ~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~-LP~~K~~AIe~lgfGtv~KiFLE~E 323 (498)
T KOG0685|consen 245 RIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPP-LPAEKQRAIERLGFGTVNKIFLEFE 323 (498)
T ss_pred hhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCC-CCHHHHHHHHhccCCccceEEEEcc
Confidence 466779999999874 56888888888899999999998655544 43321 1110 00111
Q ss_pred --------------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhC
Q 043717 108 --------------------------------------------------------ENIPTATAEKVKKGMLEGVEAALG 131 (246)
Q Consensus 108 --------------------------------------------------------~~~~~~~~eel~~~ll~eL~~llg 131 (246)
.....+++|+|.+.+..-|++.++
T Consensus 324 ~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~ 403 (498)
T KOG0685|consen 324 EPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLK 403 (498)
T ss_pred CCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcC
Confidence 111257999999999999999998
Q ss_pred CCCCCCCCCceeeeeecCccCCC----CC---CCC----CC---------ccCCCCCEEEEcCCCCCC---CHHHHHHHH
Q 043717 132 RPKGSLQKPIYTRVHLWGAALPT----NT---PSI----PC---------IFDPHGRAGICGNWLLGS---SVESAALSG 188 (246)
Q Consensus 132 ~~~~~~~~p~~~~v~RW~~A~P~----~~---~g~----~~---------~~~~~~gL~laGDw~~G~---~ie~Av~SG 188 (246)
-+ .+++|.-+.-+.|. +.|- |. ++. .. ..+..|.|.+||....-- ++-+|++||
T Consensus 404 n~--~iP~p~kilRs~W~-snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG 480 (498)
T KOG0685|consen 404 NP--EIPKPKKILRSQWI-SNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSG 480 (498)
T ss_pred CC--CCCCchhhhhhccc-CCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhh
Confidence 42 34577777677784 2222 11 110 00 113567899999988654 999999999
Q ss_pred HHHHHHHHHHhc
Q 043717 189 MALANHIADYLG 200 (246)
Q Consensus 189 ~~aA~~l~~~l~ 200 (246)
.+-|++|++...
T Consensus 481 ~REA~RL~~~y~ 492 (498)
T KOG0685|consen 481 WREADRLLEHYE 492 (498)
T ss_pred HHHHHHHHHHHH
Confidence 999999998543
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.05 E-value=8.1e-05 Score=71.37 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=38.1
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCHHHHH-Hhhcc
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNGKCAN-WLLGS 96 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa~~A~-~LL~~ 96 (246)
++|+++++|.+|...+++ +.|.++++..+++|.||+++.++.+. .||+.
T Consensus 244 ~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~ 294 (493)
T TIGR02730 244 GQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKA 294 (493)
T ss_pred CEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCc
Confidence 689999999999876543 56666666677899999998877665 47653
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.85 E-value=0.00044 Score=66.85 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=102.5
Q ss_pred CcceeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCHHHHHH-hhccC-ChHHHH-HHhh-------------
Q 043717 45 TSMVSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNGKCANW-LLGSS-GLPQIA-RQMK------------- 107 (246)
Q Consensus 45 p~m~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa~~A~~-LL~~~-~~~~la-~~L~------------- 107 (246)
+..++|+++.+|..|...+++ ..++..++...++|.||+|+|-.+... .+... .+|..- ..++
T Consensus 226 a~~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~ 305 (501)
T KOG0029|consen 226 AEGLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILE 305 (501)
T ss_pred CCCcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEE
Confidence 445899999999999987665 334444343479999999999988755 11110 011110 0111
Q ss_pred -------------------------------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q 043717 108 -------------------------------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQ 138 (246)
Q Consensus 108 -------------------------------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~ 138 (246)
+.....+++++++.++..|+++|+.. ...
T Consensus 306 F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~--~~~ 383 (501)
T KOG0029|consen 306 FPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSE--EVP 383 (501)
T ss_pred eccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccC--cCC
Confidence 11125689999999999999999921 245
Q ss_pred CCceeeeeecCccCCCCC------CCCCC-----ccCCCC-CEEEEcCCCCC---CCHHHHHHHHHHHHHHHHHHhc
Q 043717 139 KPIYTRVHLWGAALPTNT------PSIPC-----IFDPHG-RAGICGNWLLG---SSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 139 ~p~~~~v~RW~~A~P~~~------~g~~~-----~~~~~~-gL~laGDw~~G---~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.|....+.||..-...+. ++.+. +..+-. ++|+||+.+.- +++++|+.||..+|..|+..+.
T Consensus 384 ~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 384 DPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred CccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 788888999974432221 22111 112333 49999998753 4999999999999999988765
No 30
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.95 E-value=0.009 Score=49.65 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=30.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.++.+.+++|.|++.++..+.+|.||+|+-.
T Consensus 97 l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 97 LEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp GGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred cccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 4699999999999999999999977767789999999874
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.31 E-value=0.22 Score=45.54 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=39.0
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH-HHHhh
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
+++++++++|++|...+++|.+...++..+.+|.||.|..... .++.+
T Consensus 120 gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 4789999999999988889998876666789999999998654 44444
No 32
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.19 E-value=0.22 Score=45.93 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=37.2
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
+++|+.+++|++|+..+++|.|.+++|..+.+|.||+|+-++.
T Consensus 148 G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 148 RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 5789999999999998889999887775578999999998764
No 33
>PRK11445 putative oxidoreductase; Provisional
Probab=94.69 E-value=0.52 Score=43.08 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=34.8
Q ss_pred cceeeecCceeeEEEEeCCeEEEEe-CCc--eeeccCEEEEcCCHH
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRE-NVK--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~-~~g--~~~~aD~VVlA~Pa~ 88 (246)
..++++++++|+.++..+++|.|.. +++ ..+.+|.||.|.-..
T Consensus 111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 3489999999999999889998875 444 257899999998754
No 34
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.37 E-value=0.071 Score=43.26 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=33.5
Q ss_pred Ccceeee-cCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC
Q 043717 45 TSMVSIV-RPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 45 p~m~~I~-l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P 86 (246)
|..++|+ ...+|+.|.+.+++|.|.+.+|....||+||||+-
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 4444443 46799999999999999887777889999999974
No 35
>PRK06116 glutathione reductase; Validated
Probab=94.26 E-value=0.28 Score=46.45 Aligned_cols=103 Identities=12% Similarity=-0.061 Sum_probs=64.5
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGV 126 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL 126 (246)
++|+++++|.+|...+++ +.+.+.+|..+.+|.||+|+....-... ...+
T Consensus 223 V~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~-------------------l~l~---------- 273 (450)
T PRK06116 223 IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG-------------------LGLE---------- 273 (450)
T ss_pred cEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC-------------------CCch----------
Confidence 789999999999887555 6777666667899999999753110000 0000
Q ss_pred HHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 127 EAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 127 ~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
..|+.. ..--++.+-. .+.+..|+||.+||-..+. ....|+..|..+|+.|..
T Consensus 274 --~~g~~~---~~~G~i~vd~-------------~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 274 --NAGVKL---NEKGYIIVDE-------------YQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred --hcCceE---CCCCcEecCC-------------CCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 011100 0000111111 1234568999999987654 788999999999998874
No 36
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.02 E-value=1.3 Score=40.88 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=37.9
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH-HHHhh
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
.++|+++++|++++..+++|.|+.+++..+.+|.||.|.-... ..+++
T Consensus 127 gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 127 GVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred CCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhh
Confidence 3689999999999998889998876666789999999987433 33443
No 37
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.01 E-value=0.5 Score=43.41 Aligned_cols=39 Identities=10% Similarity=-0.138 Sum_probs=33.2
Q ss_pred ecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 51 VRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 51 ~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
+++++|++++..+++|.|..+++..+.+|.||.|.-...
T Consensus 129 ~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 129 RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 789999999998899999887776789999999887543
No 38
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.98 E-value=0.31 Score=46.13 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=65.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|++++..++++.+...++..+++|.||+|+....-..++. .+
T Consensus 231 I~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~-------------------l~----------- 280 (461)
T PRK05249 231 VTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLN-------------------LE----------- 280 (461)
T ss_pred CEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCC-------------------ch-----------
Confidence 789999999999987778877766566789999999976321111110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+.. ..--++.|- ..+.+..|+||.+||-.... ....|+.+|..+|+.|+.
T Consensus 281 -~~g~~~---~~~G~i~vd-------------~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 281 -NAGLEA---DSRGQLKVN-------------ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred -hhCcEe---cCCCcEeeC-------------CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 011100 000011111 11224468999999987654 678899999999998873
No 39
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.81 E-value=1.4 Score=40.81 Aligned_cols=142 Identities=19% Similarity=0.108 Sum_probs=81.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHH--HhhccC--------ChH----HHHHHhh------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCAN--WLLGSS--------GLP----QIARQMK------ 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~--~LL~~~--------~~~----~la~~L~------ 107 (246)
..++++++|++|+..++++.+.+++|..+.++.||-|.++.... .++-.. ..+ .....|+
T Consensus 101 ~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~ 180 (374)
T PF05834_consen 101 GVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARPLGLQHFYGWEVETDEPVFDPDTATLMDFRVPQS 180 (374)
T ss_pred CeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccccccceeEEEEEeccCCCCCCCceEEEEecccCC
Confidence 35788999999999998888888777788999999999854331 111100 000 0000111
Q ss_pred ------------------------hhCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCC-Cc
Q 043717 108 ------------------------ENIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIP-CI 162 (246)
Q Consensus 108 ------------------------~~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~-~~ 162 (246)
...+..+.+++.+.+.+-+++ +|+.. +-.+.+-.-.+|-+..+.. ..
T Consensus 181 ~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~-~g~~~-------~~i~~~E~G~IPm~~~~~~~~~ 252 (374)
T PF05834_consen 181 ADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLER-LGIDD-------YEILEEERGVIPMTTGGFPPRF 252 (374)
T ss_pred CCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHH-cCCCc-------eeEEEeecceeecccCCCcccc
Confidence 123346788888888888887 77631 2223444455666332221 12
Q ss_pred cCCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHHHHH
Q 043717 163 FDPHGRAGICGNWLLG---SSVESAALSGMALANHIAD 197 (246)
Q Consensus 163 ~~~~~gL~laGDw~~G---~~ie~Av~SG~~aA~~l~~ 197 (246)
....-.++.+|-++.- -++..+.+.+..+|+.+.+
T Consensus 253 ~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 253 GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 2223345555556532 2666666666655555554
No 40
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=93.57 E-value=1.4 Score=41.94 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=83.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCC---------------hHH-HHHH------
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSG---------------LPQ-IARQ------ 105 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~---------------~~~-la~~------ 105 (246)
++|+.+|+|+.|+. ++.|.|.+++| .+.+|.||+|+-++.. .|++... .+. +...
T Consensus 198 v~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~-~l~~~~~~~~~p~~~~~~~t~pl~~~~~~~~~~~~~ 274 (460)
T TIGR03329 198 VEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA-SHFPQFERSIAIVSSDMVITEPAPDLLAATGLDHGT 274 (460)
T ss_pred CEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc-ccChhhcCeEEEeccceEecCCCcHHHHhhcCCCCc
Confidence 68999999999975 55688877766 5799999999886532 2222100 011 1000
Q ss_pred -h-h------------hh---------C--------C-CCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCC
Q 043717 106 -M-K------------EN---------I--------P-TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALP 153 (246)
Q Consensus 106 -L-~------------~~---------~--------~-~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P 153 (246)
+ + +. . + ..+.....+.+.+.+.++|+.- . ..-..++|.--++
T Consensus 275 ~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L----~--~~~i~~~W~G~~~ 348 (460)
T TIGR03329 275 SVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPAL----A--EVPIAASWNGPSD 348 (460)
T ss_pred eEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhCCCc----C--CCeeeEEEeceeC
Confidence 0 0 00 0 0 0122344567778888888621 1 1224688986655
Q ss_pred CCCCCCCCcc--CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 154 TNTPSIPCIF--DPHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 154 ~~~~g~~~~~--~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
..+-+.+.+- ...+||++|.=+ .|-++--+...|+.+|+.|+.
T Consensus 349 ~t~D~~P~iG~~~~~~gl~~a~G~-~G~Gv~~a~~~G~~lA~li~g 393 (460)
T TIGR03329 349 RSVTGLPFFGRLNGQPNVFYGFGY-SGNGVAPSRMGGQILSSLVLG 393 (460)
T ss_pred CCCCCCceeeeecCCCCEEEEeCc-CCCChhHHHHHHHHHHHHhcC
Confidence 4444434332 345799987554 566788888889999987753
No 41
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.56 E-value=0.44 Score=45.08 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=64.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc--eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEG 125 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~e 125 (246)
++++++++|.+|...++++.+...++ ..+.+|.||+|+....-.. ....+.
T Consensus 226 i~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~-------------------~l~~~~-------- 278 (461)
T TIGR01350 226 VKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE-------------------GLGLEN-------- 278 (461)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC-------------------CCCcHh--------
Confidence 68999999999988878887765444 4689999999976422100 000000
Q ss_pred HHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 126 VEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 126 L~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+++.. ..--++.+. ..+.+..|+||.+||-..+. ....|+..|..+|+.|..
T Consensus 279 ----~gl~~---~~~g~i~vd-------------~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 279 ----LGVEL---DERGRIVVD-------------EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred ----hCceE---CCCCcEeeC-------------CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 11100 000011111 11223458999999988665 788899999999998874
No 42
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.53 E-value=0.14 Score=45.50 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=37.0
Q ss_pred eeeecCceeeEEEEeCCeEE-EEeCCceeeccCEEEEcCCHHHHHHhhcc
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRENVKPRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
++|+.+++|++|...+++|+ |.+++|. +.+|.||+|+-+... .|++.
T Consensus 162 v~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~ 209 (358)
T PF01266_consen 162 VEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPL 209 (358)
T ss_dssp -EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHT
T ss_pred hhccccccccchhhcccccccccccccc-cccceeEecccccce-eeeec
Confidence 79999999999999999998 9898886 899999999876543 45443
No 43
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=92.93 E-value=2.7 Score=38.95 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=37.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH-HHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
++|+++++|++|+..+++++|...+|..+.+|-||.|.-.. ..++.+
T Consensus 127 v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 127 VTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred eEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 68999999999998888888888777678999999998753 344444
No 44
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.86 E-value=1.2 Score=41.31 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=79.7
Q ss_pred eeeecCceeeEEEEeCCeEEEEe-CC----ceeeccCEEEEcCCHHHH--HHhhccC-C----------h--HH-HHH--
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE-NV----KPRGQFDVVVIAHNGKCA--NWLLGSS-G----------L--PQ-IAR-- 104 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~-~~----g~~~~aD~VVlA~Pa~~A--~~LL~~~-~----------~--~~-la~-- 104 (246)
++|+.+++|++|+..+++|.+.. ++ +..+.+|.||+|+-++.. ...+... . . +. ...
T Consensus 212 ~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~i~p~~g~~~~~~~~~~~~~~~ 291 (410)
T PRK12409 212 VQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDEASRAA 291 (410)
T ss_pred CEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCCCccccCCceEEEeecCCcccccc
Confidence 68999999999998888887654 22 225789999999997642 2222110 0 0 00 000
Q ss_pred -----Hhh--------h---h------------CCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCC
Q 043717 105 -----QMK--------E---N------------IPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNT 156 (246)
Q Consensus 105 -----~L~--------~---~------------~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~ 156 (246)
... . . .......+..+.+++.+.+.++. +.. ..+..|.--.+..+
T Consensus 292 ~p~~~~~~~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~----l~~---~~~~~w~G~r~~t~ 364 (410)
T PRK12409 292 APWVSLLDDSAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPD----VST---RRVVPWAGLRPMMP 364 (410)
T ss_pred CCceeeeecCCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCC----CCc---cccceecccCCCCC
Confidence 000 0 0 00111234567777888888862 111 12335844444333
Q ss_pred CCCCCcc-CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 157 PSIPCIF-DPHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 157 ~g~~~~~-~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
-+.+.+- ...++|+++-- +.+.++--|...|+.+|+.|..
T Consensus 365 D~~PiiG~~~~~~l~~~~G-~~~~G~~~ap~~g~~lA~~i~~ 405 (410)
T PRK12409 365 NMMPRVGRGRRPGVFYNTG-HGHLGWTLSAATADLVAQVVAQ 405 (410)
T ss_pred CCCCeeCCCCCCCEEEecC-CcccchhhcccHHHHHHHHHcC
Confidence 3333222 22589887653 4566888888888888887754
No 45
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.62 E-value=0.84 Score=43.24 Aligned_cols=103 Identities=15% Similarity=0.021 Sum_probs=64.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|.+|...+++..+...++..+++|.||+|+....-..+| ..+
T Consensus 222 V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l-------------------~l~----------- 271 (446)
T TIGR01424 222 IRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGL-------------------GLE----------- 271 (446)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcC-------------------Ccc-----------
Confidence 78999999999988777777766556578999999997741100000 000
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+ .+.+..+ +... ..+.+..|+||.+||-..+. ...-|+..|..+|+.|+.
T Consensus 272 -~~g~-----------~~~~~G~-i~vd----~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 272 -AAGV-----------ELNDAGA-IAVD----EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred -ccCe-----------EECCCCc-EEeC----CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 0011 0000000 1000 11234568999999998765 667899999999998874
No 46
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.45 E-value=0.92 Score=43.12 Aligned_cols=103 Identities=13% Similarity=-0.029 Sum_probs=63.4
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCc-eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVK-PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEG 125 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g-~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~e 125 (246)
++++++++|.+|...+++ ..+..+++ ..+++|.||+++.-..-..+|. .+
T Consensus 222 I~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~-------------------l~--------- 273 (450)
T TIGR01421 222 INVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLG-------------------LE--------- 273 (450)
T ss_pred CEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCC-------------------cc---------
Confidence 789999999999876444 56665555 5689999999976311111100 00
Q ss_pred HHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 126 VEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 126 L~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.+++.. ..--++.+-. .+.+..|+||.+||.+.+. ...-|+..|+.+|+.|+.
T Consensus 274 ---~~g~~~---~~~G~i~vd~-------------~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 274 ---NVGIKL---NEKGQIIVDE-------------YQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred ---ccCcEE---CCCCcEEeCC-------------CCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 011100 0000111111 1224568999999998766 688999999999998873
No 47
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.22 E-value=2.3 Score=39.33 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=86.7
Q ss_pred eeeecCceeeEEEEeCCeEEEEeC-CceeeccCEEEEcCCHH-HHHHhhccCChH---HHH--------H--Hhh-----
Q 043717 48 VSIVRPCWISNLEPFNGMWHLREN-VKPRGQFDVVVIAHNGK-CANWLLGSSGLP---QIA--------R--QMK----- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~-~g~~~~aD~VVlA~Pa~-~A~~LL~~~~~~---~la--------~--~L~----- 107 (246)
++++.+++|+.++..+++++++.+ +|.++.+|-||-|=-.. ..++.+...... ... . ...
T Consensus 120 v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~ 199 (387)
T COG0654 120 VTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGE 199 (387)
T ss_pred cEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEE
Confidence 799999999999999999888776 77788999999987743 444444411000 000 0 000
Q ss_pred -------------h----------------hCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCC
Q 043717 108 -------------E----------------NIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPS 158 (246)
Q Consensus 108 -------------~----------------~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g 158 (246)
. .....++++ .+.++.+.++... .........++...|-...-
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~----~~~~~~~~~~~~~~pl~~~~ 271 (387)
T COG0654 200 RFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEE----FLRELQRRLGERD----PLGRVTLVSSRSAFPLSLRV 271 (387)
T ss_pred EecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHH----HHHHHHHhcCccc----ccceEEEccccccccccchh
Confidence 0 011223322 3566677776431 11223455555555543221
Q ss_pred CCCccCCCCCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 159 IPCIFDPHGRAGICGNWLL------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 159 ~~~~~~~~~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
...+ . .+++.|+||... |-+++=+++.+..+|+.|.....
T Consensus 272 a~~~-~-~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 272 AERY-R-RGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred hhhe-e-cCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 1111 1 278999999875 34999999999999988887654
No 48
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.05 E-value=0.24 Score=46.58 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=36.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P 86 (246)
++|+++++|.+|.+.+.+++|.++++..+.+|.+|||+-
T Consensus 126 V~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 126 VTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 899999999999999989999988886789999999986
No 49
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=92.02 E-value=0.28 Score=46.38 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=28.2
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.+|...+++ +.|.++++..+.+|+||||+-.
T Consensus 124 v~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 124 VEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp -EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred CEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 799999999999998877 8998855568899999999764
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=91.65 E-value=3.1 Score=36.03 Aligned_cols=42 Identities=7% Similarity=-0.033 Sum_probs=33.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeC-CceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLREN-VKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~-~g~~~~aD~VVlA~Pa~~ 89 (246)
++++++++|..+...++++.+... ++..+.+|.||+|+-...
T Consensus 106 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 106 AELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 789999999999988888766543 335788999999999754
No 51
>PRK14727 putative mercuric reductase; Provisional
Probab=91.21 E-value=1.2 Score=42.70 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=64.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++|+++++|.++...++++.+..+++ .+.+|.||+|+....-..+|.. +.
T Consensus 243 V~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l-------------------~~---------- 292 (479)
T PRK14727 243 IEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNL-------------------EA---------- 292 (479)
T ss_pred CEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCc-------------------hh----------
Confidence 78999999999988777887766555 5789999999875221111110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.|+.. ..--++.|-. .+.+..|+||.+||-.... .+.-|+..|..+|+.|..
T Consensus 293 --~g~~~---~~~G~i~Vd~-------------~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 293 --VGVTT---DTSGAIVVNP-------------AMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred --hCcee---cCCCCEEECC-------------CeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence 11100 0000111111 1224568999999988665 677899999999998874
No 52
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.87 E-value=1.2 Score=42.25 Aligned_cols=46 Identities=13% Similarity=-0.138 Sum_probs=33.5
Q ss_pred eeeecCceeeEEEEeCCeEEE-EeC-Cc-eeeccCEEEEcCCHHHHHHh
Q 043717 48 VSIVRPCWISNLEPFNGMWHL-REN-VK-PRGQFDVVVIAHNGKCANWL 93 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l-~~~-~g-~~~~aD~VVlA~Pa~~A~~L 93 (246)
++|+++++|.+++..+++... ... ++ ..+.+|.||+|+-......|
T Consensus 274 v~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 274 GRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 689999999999987776543 232 32 45789999999887544333
No 53
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.59 E-value=1.4 Score=42.14 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=63.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCC--c--eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENV--K--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGML 123 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~--g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll 123 (246)
++|+++++|.+|+..+++..+...+ + ..+++|.||+++....-...| ..
T Consensus 239 i~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l-------------------~~-------- 291 (475)
T PRK06327 239 LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL-------------------GL-------- 291 (475)
T ss_pred cEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC-------------------Cc--------
Confidence 7899999999998877776665422 2 467899999997632111100 00
Q ss_pred HHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 124 EGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 124 ~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+.+|+.. ..--++.+.. .+.+..|+||.|||-+.+. ....|+..|..+|+.|..
T Consensus 292 ----~~~g~~~---~~~G~i~vd~-------------~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 292 ----EAVGLKL---DERGFIPVDD-------------HCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred ----HhhCcee---CCCCeEeECC-------------CCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcC
Confidence 0111100 0001111211 1123468999999988755 778899999999998864
No 54
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=0.52 Score=45.48 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCC----CccCCCCCEEEEcCCCCC---CCHHHHH
Q 043717 113 ATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIP----CIFDPHGRAGICGNWLLG---SSVESAA 185 (246)
Q Consensus 113 ~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~----~~~~~~~gL~laGDw~~G---~~ie~Av 185 (246)
..++++.....+++...++... ......++.+=..++....+|.. ...++.++++++|||..- +++|+|.
T Consensus 373 ~~~~~~~a~~e~~~~~~vP~~~---~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~ 449 (485)
T COG3349 373 ESDEAIVATFEKELYELVPSLA---EAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGAT 449 (485)
T ss_pred cchhhHHHHHHHHhhhcCCchh---cccccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhh
Confidence 3567777888888886665321 12223334444455555555532 233667899999999864 3999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 043717 186 LSGMALANHIADYLGSG 202 (246)
Q Consensus 186 ~SG~~aA~~l~~~l~~~ 202 (246)
.||+.+|+.|++.+..+
T Consensus 450 ~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 450 LSGLLAANAILDNLGHH 466 (485)
T ss_pred hhHHHHHHHHHHhhhhc
Confidence 99999999999876543
No 55
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.23 E-value=3.4 Score=38.19 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeC--Cc-eeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLREN--VK-PRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~--~g-~~~~aD~VVlA~Pa~ 88 (246)
.++++++++|++|+..++++.|+.. ++ ..+.+|.||.|.-..
T Consensus 136 ~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 136 NITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred CcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCC
Confidence 4789999999999988888888763 33 357899999987643
No 56
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.11 E-value=1.2 Score=42.36 Aligned_cols=50 Identities=12% Similarity=-0.059 Sum_probs=38.1
Q ss_pred eeeecCceeeEEEEeCCeEE-EEeCCc--eeeccCEEEEcCCHHHHHHhhccC
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRENVK--PRGQFDVVVIAHNGKCANWLLGSS 97 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~~~g--~~~~aD~VVlA~Pa~~A~~LL~~~ 97 (246)
+++..+++|.++...++++. +.++++ ..+.+|+||||+-++-...|+...
T Consensus 278 g~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 278 GVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred CEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 58999999999998888765 443433 478999999999988555666543
No 57
>PRK09897 hypothetical protein; Provisional
Probab=89.53 E-value=0.74 Score=45.10 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=33.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeC-CceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLREN-VKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~-~g~~~~aD~VVlA~Pa 87 (246)
+.|+.+++|+.|++.+++|.|.++ ++..+.+|.||||+-.
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 577889999999999999999874 4457789999999875
No 58
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.24 E-value=0.56 Score=45.00 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=31.7
Q ss_pred eecCceeeEEEEeCCeEEEEeCC--c--eeeccCEEEEcCCHH
Q 043717 50 IVRPCWISNLEPFNGMWHLRENV--K--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 50 I~l~t~V~~I~~~~~~w~l~~~~--g--~~~~aD~VVlA~Pa~ 88 (246)
|+++++|++|.+.+++|.|...+ + ....||+||+|+-..
T Consensus 130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 89999999999988899997632 2 235799999999854
No 59
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.17 E-value=3 Score=43.88 Aligned_cols=36 Identities=17% Similarity=-0.040 Sum_probs=32.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 166 HGRAGICGNWLLGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 166 ~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.++||+|||-.+..++..|+.+|..+|..|+..+..
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999887779999999999999999887754
No 60
>PLN02463 lycopene beta cyclase
Probab=88.44 E-value=11 Score=35.94 Aligned_cols=37 Identities=11% Similarity=-0.082 Sum_probs=31.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAH 85 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~ 85 (246)
++++ .++|.+|+..++++.|.+++|..+.+|.||.|+
T Consensus 129 V~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~Ad 165 (447)
T PLN02463 129 VQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDAT 165 (447)
T ss_pred CEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECc
Confidence 4554 578999999888899988777678999999998
No 61
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.18 E-value=0.79 Score=44.83 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=30.6
Q ss_pred eeecCceeeEEEEeC-----CeEEEEeC-Cc--eeeccCEEEEcCCHH
Q 043717 49 SIVRPCWISNLEPFN-----GMWHLREN-VK--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~-----~~w~l~~~-~g--~~~~aD~VVlA~Pa~ 88 (246)
.|++||+|++|++.+ ++|.|+++ +| .+..||+||+|+-..
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 689999999999864 47999873 33 345799999987653
No 62
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.17 E-value=13 Score=34.42 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=80.1
Q ss_pred eeeecCceeeEEEEe-CCeE-EEEeCCceeeccCEEEEcCCHHHH--HHhhccC-Ch-H------------HHHH-Hhh-
Q 043717 48 VSIVRPCWISNLEPF-NGMW-HLRENVKPRGQFDVVVIAHNGKCA--NWLLGSS-GL-P------------QIAR-QMK- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~-~~~w-~l~~~~g~~~~aD~VVlA~Pa~~A--~~LL~~~-~~-~------------~la~-~L~- 107 (246)
+++..+++|.+|... ++++ .|.++++ .+.++.||+++-+... .+++... .. + .+.. .+.
T Consensus 198 v~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (407)
T TIGR01373 198 VDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIESHPLQALVSEPLKPIIDTVVMS 276 (407)
T ss_pred CEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCcccceEEEecCCCCCcCCeEEe
Confidence 689999999999864 4554 4666666 6789999998876553 2332110 00 0 0000 000
Q ss_pred --------------------hh-CC---CCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCcc
Q 043717 108 --------------------EN-IP---TATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIF 163 (246)
Q Consensus 108 --------------------~~-~~---~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~ 163 (246)
.+ .. ...+.+..+.+++.+.++++.- ... -..+.|--..|..+-+.+.+-
T Consensus 277 ~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l----~~~--~~~~~w~G~~~~t~D~~PiIg 350 (407)
T TIGR01373 277 NAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPIL----SRV--RMLRSWGGIVDVTPDGSPIIG 350 (407)
T ss_pred CCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCc----CCC--CeEEEeccccccCCCCCceeC
Confidence 00 00 1123445677888888887621 111 235678555554333333221
Q ss_pred -CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 164 -DPHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 164 -~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
.+.+|++++. -+.|.++--+-..|+.+|+.|..
T Consensus 351 ~~~~~gl~~a~-G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 351 KTPLPNLYLNC-GWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred CCCCCCeEEEe-ccCCcchhhchHHHHHHHHHHhC
Confidence 1247999776 34455677777779999987763
No 63
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=87.90 E-value=0.73 Score=43.05 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=34.8
Q ss_pred ceeeeeecCccCCCCCCCCCCc-cCCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 141 IYTRVHLWGAALPTNTPSIPCI-FDPHGRAGICGNWL-LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 141 ~~~~v~RW~~A~P~~~~g~~~~-~~~~~gL~laGDw~-~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.....+.| +|.|.|.+...+- ..-++|||...-.= ...+||-...+|+.+|..+...+..
T Consensus 289 ~~~~~~~W-~AYP~~~p~~~~~~~~L~~glyY~n~iE~~aStME~sai~akNvA~L~~~~~~~ 350 (368)
T PF07156_consen 289 SEVKRKEW-LAYPHYSPPEKFPPFKLHDGLYYTNAIESAASTMETSAIAAKNVALLIYDRWNG 350 (368)
T ss_pred CceeeeeE-eCCCCCCCCCCCCCeEeeCCeeEchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999 7888887643211 01123444332110 1237777778899988877766543
No 64
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=87.52 E-value=1.2 Score=43.25 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=35.5
Q ss_pred eeeecCceeeEEEEe-CCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPF-NGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~-~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
++|+++|+|+.|.+. ++.|.|.+++| .+.+|.||+|+-++..
T Consensus 232 v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 232 ISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 678999999999987 56788888766 6799999999987653
No 65
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.39 E-value=3.6 Score=39.77 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=62.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|.+|...++...+...++..+.+|.||+++.-..-..+|. .+
T Consensus 237 V~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~-------------------l~----------- 286 (499)
T PTZ00052 237 TLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLN-------------------LN----------- 286 (499)
T ss_pred CEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccC-------------------ch-----------
Confidence 789999999999876666666665555678999999965311111110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCC--CCHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLG--SSVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G--~~ie~Av~SG~~aA~~l~~ 197 (246)
-+|+. +.+..+... .. . .+..|+||.+||-..+ .....|+..|..+|+.|+.
T Consensus 287 -~~g~~-----------~~~~G~ii~-~~----~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 287 -AIGVH-----------VNKSNKIIA-PN----D-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred -hcCcE-----------ECCCCCEee-CC----C-cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 01110 100000000 00 0 2445899999997754 3788999999999998864
No 66
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=87.11 E-value=1 Score=41.04 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=37.7
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhc
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLG 95 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~ 95 (246)
++|+++++|++|...+++|.|.++++ .+.+|.||+|+.+... .|++
T Consensus 164 v~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~ 209 (376)
T PRK11259 164 AELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK-DLLP 209 (376)
T ss_pred CEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh-hhcc
Confidence 68999999999999888899887766 6789999999987543 4443
No 67
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.82 E-value=3.5 Score=39.45 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=63.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCC--c--eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENV--K--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGML 123 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~--g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll 123 (246)
++|+++++|..|+..+++..+...+ + ..+++|.||+++....-..+|. .+
T Consensus 229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~-------------------~~------- 282 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLD-------------------AE------- 282 (471)
T ss_pred eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccC-------------------hh-------
Confidence 6899999999998777777665422 2 3578999999976421111110 00
Q ss_pred HHHHHHhCCCCCCCCCC-ceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 124 EGVEAALGRPKGSLQKP-IYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 124 ~eL~~llg~~~~~~~~p-~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+.. .. -++.|- ..+.+..|+||.|||-+.+. ....|+..|..+|+.|..
T Consensus 283 -----~~gl~~----~~~G~I~Vd-------------~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 283 -----KAGVEV----DERGFIRVD-------------KQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred -----hcCceE----CCCCcEeeC-------------CCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcC
Confidence 011110 00 011111 11234568999999987654 778899999999998874
No 68
>PRK06185 hypothetical protein; Provisional
Probab=86.40 E-value=16 Score=33.57 Aligned_cols=48 Identities=17% Similarity=0.014 Sum_probs=34.5
Q ss_pred ceeeecCceeeEEEEeCCeE---EEEeCCc-eeeccCEEEEcCCHHH-HHHhh
Q 043717 47 MVSIVRPCWISNLEPFNGMW---HLRENVK-PRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w---~l~~~~g-~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
.++++.+++|+++...++++ .+..+++ ..+.+|.||.|.-... .++++
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 36899999999999887765 3333455 4689999999987544 34444
No 69
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.36 E-value=4.7 Score=38.43 Aligned_cols=102 Identities=16% Similarity=0.021 Sum_probs=62.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEe---C-C-ceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE---N-V-KPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGM 122 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~---~-~-g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~l 122 (246)
++|+++++|.+|+..++++.+.. . + +..+++|.||+++....-...|. .+
T Consensus 230 V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~-------------------~~------ 284 (466)
T PRK06115 230 MKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLG-------------------LE------ 284 (466)
T ss_pred CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCC-------------------cc------
Confidence 79999999999987766766543 1 2 24678999999976321100000 00
Q ss_pred HHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 123 LEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 123 l~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
..++. +... .+... ..+.+..|+||.|||-..+. ...-|.+.|..+|+.|+.
T Consensus 285 ------~~g~~-----------~~~~--G~~vd----~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 285 ------TVGLE-----------TDKR--GMLAN----DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred ------cccce-----------eCCC--CEEEC----CCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 00110 0000 01000 11235678999999998765 778899999999998874
No 70
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.03 E-value=1.3 Score=38.55 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=33.5
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++++ ++|.+|.+.+++|.+...++..+.||.||+|+-.
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 367888 8999999988889988766667899999999864
No 71
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.88 E-value=1.4 Score=43.96 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=36.6
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++|+.+++|++|...+++|.|.++++....+|.||+|+-+..
T Consensus 421 Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 421 QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 4788999999999998889998877775567999999988764
No 72
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=85.75 E-value=1.6 Score=40.63 Aligned_cols=43 Identities=12% Similarity=-0.115 Sum_probs=36.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
..++++++|++|+..+++|.|.+.++.++.+|.||.|.-....
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4589999999999988899998877767899999999876554
No 73
>PRK08244 hypothetical protein; Provisional
Probab=85.74 E-value=5.3 Score=38.18 Aligned_cols=47 Identities=13% Similarity=-0.125 Sum_probs=35.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEe--CCc-eeeccCEEEEcCCHH-HHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE--NVK-PRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~--~~g-~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
++|+++++|++++..++++.+.. .++ .++.+|.||.|.-.. ...+++
T Consensus 115 v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 115 VEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred CeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 68999999999998888887654 234 467899999998643 344444
No 74
>PRK07588 hypothetical protein; Provisional
Probab=85.25 E-value=1.7 Score=40.08 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred cceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
..++|+++++|++|+..+++|+|.+++|..+.+|.||-|--..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 3578999999999999889999988777677899999887743
No 75
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.20 E-value=5.5 Score=38.43 Aligned_cols=103 Identities=15% Similarity=-0.004 Sum_probs=62.6
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGV 126 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL 126 (246)
++|+++++|.+|...+++ ..+.+.++..+++|.||+|+--..-..+| ..+.
T Consensus 246 I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l-------------------~l~~--------- 297 (486)
T TIGR01423 246 INIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTL-------------------QLDK--------- 297 (486)
T ss_pred CEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccC-------------------Cchh---------
Confidence 789999999999876443 45555455578999999986521110111 0000
Q ss_pred HHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 127 EAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 127 ~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+|+.. ..--++.|- ..+.+..|+||.+||-..+. -..-|+..|..+|+.|+.
T Consensus 298 ---~gl~~---~~~G~I~Vd-------------~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 298 ---VGVEL---TKKGAIQVD-------------EFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred ---hCceE---CCCCCEecC-------------CCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 12110 000011111 11224568999999998765 677799999999999874
No 76
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=84.69 E-value=10 Score=36.60 Aligned_cols=50 Identities=14% Similarity=-0.030 Sum_probs=37.2
Q ss_pred eeeecCceeeEEEEeCCeE-EEEeCCceeeccCEEEEcCCHHHHH-HhhccC
Q 043717 48 VSIVRPCWISNLEPFNGMW-HLRENVKPRGQFDVVVIAHNGKCAN-WLLGSS 97 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w-~l~~~~g~~~~aD~VVlA~Pa~~A~-~LL~~~ 97 (246)
.+|.++..|.+|.-+++.. -|...+|..+.+..||.-+.++.+- .||+..
T Consensus 279 aeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e 330 (561)
T KOG4254|consen 279 AEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGE 330 (561)
T ss_pred ceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCc
Confidence 5899999999998776543 3556777777888888866666665 888754
No 77
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.67 E-value=1.4 Score=40.64 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=29.9
Q ss_pred eeeecCceeeEEEEeC-CeEEEEeCC-----ceeeccCEEEEcC
Q 043717 48 VSIVRPCWISNLEPFN-GMWHLRENV-----KPRGQFDVVVIAH 85 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~-~~w~l~~~~-----g~~~~aD~VVlA~ 85 (246)
+.|+.+++|++++..+ ++|+|.+.+ .....+|.||+||
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilAT 337 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILAT 337 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE--
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcC
Confidence 7899999999999988 589987622 2567899999998
No 78
>PRK06847 hypothetical protein; Provisional
Probab=84.62 E-value=1.9 Score=39.26 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=36.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|++|+..++++.+.+.+|.++.+|.||.|.-...
T Consensus 122 v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 122 ADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 689999999999988888988876666789999999988544
No 79
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=84.54 E-value=1.8 Score=39.41 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=34.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
++++.+++|.+|...+++|.|.++++ .+.+|.||+|+-+.
T Consensus 160 ~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 160 ATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred CEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 68999999999998888888877666 67899999999864
No 80
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=84.44 E-value=2.4 Score=37.67 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=79.8
Q ss_pred eeeecCceeeEEEEeCCeEE-EEeCCceeeccCEEEEcCCHHHHHHhhcc----CC-----h--HH---HHHHhh-----
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRENVKPRGQFDVVVIAHNGKCANWLLGS----SG-----L--PQ---IARQMK----- 107 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~----~~-----~--~~---la~~L~----- 107 (246)
++|+.+++|+.|...+++|. |.++++ .+.+|.||+|+-++.. .|++. .. . +. ....+.
T Consensus 152 ~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~-~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 229 (337)
T TIGR02352 152 VEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG-ELLPLPLRPVRGQPLRLEAPAVPLLNRPLRAVVYG 229 (337)
T ss_pred CEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh-hcccCCccccCceEEEeeccccccCCcccceEEEc
Confidence 68999999999998888764 666666 6789999999998765 34331 00 0 00 000000
Q ss_pred -------------------hhCC-C-CCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCcc---
Q 043717 108 -------------------ENIP-T-ATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIF--- 163 (246)
Q Consensus 108 -------------------~~~~-~-~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~--- 163 (246)
.... + ..+.+..+.+++.+.++++.-. ..-..+.|.--.|. ...+..+.
T Consensus 230 ~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~------~~~~~~~~~g~r~~-t~D~~piig~~ 302 (337)
T TIGR02352 230 RRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALK------EARLLETWAGLRPG-TPDNLPYIGEH 302 (337)
T ss_pred CCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcc------cCcHHHheecCCCC-CCCCCCEeCcc
Confidence 0000 1 1234566788888888886311 11124555444443 22222222
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLLGSSVESAALSGMALANHIA 196 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~ 196 (246)
...+|++++.=+ .|.++--+-..|+.+|+.|+
T Consensus 303 ~~~~~~~~~~g~-~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 303 PEDRRLLIATGH-YRNGILLAPATAEVIADLIL 334 (337)
T ss_pred CCCCCEEEEccc-ccCceehhhHHHHHHHHHHh
Confidence 234688877543 34456666677888888776
No 81
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=84.28 E-value=8.2 Score=35.76 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=40.3
Q ss_pred ccCCceeeeCChhHHh-HHHcCceeccccCCCCcceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 14 DHAAQFFTVTDSRFMS-WLMVGWREVWCDHGKTSMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 14 DhGAqyft~~~~~f~~-~~~~g~~~~W~~~g~p~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++.+|.+..+.+|.+ +.+ .+ +. .|+++++|.++ ..+++.+ .+|..+.+|.||-|.+..
T Consensus 78 ~l~~~Y~~I~r~~f~~~l~~-~l---------~~--~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 78 KLKTAYRSMTSTRFHEGLLQ-AF---------PE--GVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFK 137 (370)
T ss_pred hcCCCceEEEHHHHHHHHHH-hh---------cc--cEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCC
Confidence 3456888888888877 332 11 11 16778899988 3456666 455578999999999843
No 82
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=83.56 E-value=2.4 Score=44.65 Aligned_cols=39 Identities=28% Similarity=0.233 Sum_probs=34.1
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhcCC
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
+..|+||.+||...|+ .+-.|+..|+.+|..|...+...
T Consensus 718 Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999998887 68899999999999999988654
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=83.52 E-value=2.1 Score=39.59 Aligned_cols=41 Identities=7% Similarity=-0.078 Sum_probs=35.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|..|...+++|.|.++++ .+.+|.||+|+.+..
T Consensus 164 v~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 164 GEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred CEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 68999999999998888898877666 678999999988753
No 84
>PRK07236 hypothetical protein; Provisional
Probab=82.40 E-value=2.5 Score=38.90 Aligned_cols=39 Identities=15% Similarity=-0.080 Sum_probs=33.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P 86 (246)
.+|+++++|++|+..++++.+.+.+|..+.+|.||.|--
T Consensus 113 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG 151 (386)
T PRK07236 113 ERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADG 151 (386)
T ss_pred cEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCC
Confidence 469999999999998889998887776789999999833
No 85
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=82.11 E-value=2.5 Score=39.65 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=30.7
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeC-CceeeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLREN-VKPRGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~-~g~~~~aD~VVlA~Pa 87 (246)
.++|+++++|.+| .+++|.+.+. ++..+.+|+||||+-.
T Consensus 100 gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 100 GVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 3899999999999 3446888764 3346799999999875
No 86
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=81.91 E-value=11 Score=35.87 Aligned_cols=102 Identities=15% Similarity=0.029 Sum_probs=60.9
Q ss_pred eeeecCceeeEEEEe-CCeEE-EEeCCc--eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPF-NGMWH-LRENVK--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGML 123 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~-~~~w~-l~~~~g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll 123 (246)
++|+++++|.+|... +++.. +...+| ..+.+|.||+|+....-... ...+.
T Consensus 236 I~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~-------------------l~l~~------ 290 (472)
T PRK05976 236 VRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG-------------------IGLEN------ 290 (472)
T ss_pred CEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC-------------------CCchh------
Confidence 789999999999862 34443 333333 46789999999875321110 00001
Q ss_pred HHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 124 EGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 124 ~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+++.. .-.++.+.. .+.+..++||.+||-..+. ....|+..|..+|+.|..
T Consensus 291 ------~~~~~----~~g~i~Vd~-------------~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 291 ------TDIDV----EGGFIQIDD-------------FCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred ------cCcee----cCCEEEECC-------------CcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 01100 001222221 1223458999999998765 688899999999988753
No 87
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=81.81 E-value=2.7 Score=38.45 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
++|+++++|+++...+++|.|+++++..+.+|.||.|.-..
T Consensus 128 ~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 128 VTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred cEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 68899999999998888999887666667999999988743
No 88
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=81.35 E-value=2.8 Score=38.58 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=64.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|.+|...++++.+.+.++..+++|.||+|+.......|+
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~--------------------------------- 244 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALA--------------------------------- 244 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHH---------------------------------
Confidence 68999999999998877888877777678999999996531110011
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLG-----SSVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G-----~~ie~Av~SG~~aA~~l~~ 197 (246)
+.+|+.. . ..+.+. ..+.+..|+||.|||-... +.+..|+.+|..+|+.|+.
T Consensus 245 ~~~gl~~----~-~gi~vd-------------~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 245 RRAGLAV----N-RGIVVD-------------SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred HHCCCCc----C-CCEEEC-------------CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcC
Confidence 1123311 0 011111 1122456899999997642 2577789999999988874
No 89
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=80.56 E-value=3.2 Score=38.43 Aligned_cols=141 Identities=14% Similarity=0.066 Sum_probs=79.1
Q ss_pred eeeecCceeeEEEEeCCeEE-EEeCCceeeccCEEEEcCCHHHHHHhhccC--Ch---HH--------HH--------HH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRENVKPRGQFDVVVIAHNGKCANWLLGSS--GL---PQ--------IA--------RQ 105 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~--~~---~~--------la--------~~ 105 (246)
++|+++++|++|+..+++|. +.++++ .+.+|.||+|+.+... .|++.. .. +. +. ..
T Consensus 216 ~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g~~~pi~p~rg~~~~~~~~~~~~~p~~~~ 293 (416)
T PRK00711 216 VKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLGVDIPVYPLKGYSLTVPITDEDRAPVSTV 293 (416)
T ss_pred CEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhCCCcccCCccceEEEEecCCCCCCCceeE
Confidence 68999999999998877764 666655 6789999999997542 332211 00 00 00 00
Q ss_pred hh--------h--------------hCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCcc
Q 043717 106 MK--------E--------------NIPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIF 163 (246)
Q Consensus 106 L~--------~--------------~~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~ 163 (246)
+. + ......+++..+.+.+.+.++++.- .. .-..+.|..-.+..+-+.+.+-
T Consensus 294 ~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l----~~--~~~~~~w~G~r~~t~D~~PiIG 367 (416)
T PRK00711 294 LDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGG----GD--LSQATFWTGLRPMTPDGTPIVG 367 (416)
T ss_pred EecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc----cc--ccccceeeccCCCCCCCCCEeC
Confidence 00 0 0001112345566777788887631 11 1123456544443332323221
Q ss_pred -CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 164 -DPHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 164 -~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
.+.+|+++|.=+ .|.++--+-..|+.+|+.|..
T Consensus 368 ~~~~~gl~~a~G~-~g~G~~~ap~~g~~la~li~g 401 (416)
T PRK00711 368 ATRYKNLWLNTGH-GTLGWTMACGSGQLLADLISG 401 (416)
T ss_pred CcCCCCEEEecCC-chhhhhhhhhHHHHHHHHHcC
Confidence 124788876443 455777788888888887763
No 90
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=80.50 E-value=2.9 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=34.6
Q ss_pred ceeeecCceeeEEEEe-CCeEEEE---eCCc--eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPF-NGMWHLR---ENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~-~~~w~l~---~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
.++|+++++|+.|.+. +++|++. ++++ .++.+|.||+|+-++.
T Consensus 199 Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 199 NAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred CcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 4789999999999987 7789885 3333 2578999999998766
No 91
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=80.47 E-value=4.4 Score=38.72 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=33.1
Q ss_pred ceeeecCceeeEEEEeCCe-EEEEeCCcee-eccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGM-WHLRENVKPR-GQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~-w~l~~~~g~~-~~aD~VVlA~Pa 87 (246)
+++|++|++|+.|++.+++ +.+.+.+|+. ++++.||.+...
T Consensus 167 g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl 209 (429)
T COG0579 167 GVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGL 209 (429)
T ss_pred CCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCch
Confidence 3799999999999999885 5555655534 899999999884
No 92
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.26 E-value=2.6 Score=40.11 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l 199 (246)
+..|+||.+||...|. .+-.|+.+|+.+|..|...|
T Consensus 413 Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 413 TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 4568999999999777 68899999999999987653
No 93
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.22 E-value=3.2 Score=38.42 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=38.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH-HHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
++|+.+++|.+++..+++|.|.+.+|..+.+|.||.|.-.. ..++++
T Consensus 127 v~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 127 IGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred CEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhc
Confidence 67899999999999888999887666678999999998753 344444
No 94
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=80.04 E-value=3.6 Score=37.83 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=38.0
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH-HHHHhh
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
+++|+++++|++|...+++|.+.+.++..+.+|.||.|.-.. ...+.+
T Consensus 125 gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 125 GIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred CCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHc
Confidence 368999999999999889999887666678999999998643 344443
No 95
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.91 E-value=2.7 Score=42.00 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=32.3
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..++||.+||-..|. .+-.|+..|+.+|..|...|.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 4568999999999887 568999999999999998875
No 96
>PRK09126 hypothetical protein; Provisional
Probab=79.78 E-value=3.3 Score=37.96 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=35.6
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++|+.+++|++++..++++.|.+++|..+.+|.||.|.-..
T Consensus 125 g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 125 GIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred CcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCC
Confidence 378999999999998888888887666678999999998853
No 97
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.57 E-value=3.6 Score=39.84 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=34.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++++++|..|.+.++.|.|...++..+.+|.||+|+-+
T Consensus 281 v~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 281 VDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA 320 (517)
T ss_pred CEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC
Confidence 6889999999999987889988766667899999999986
No 98
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=79.55 E-value=3.7 Score=39.28 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||...|. .+-.|+.+|+.+|..|...+.
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999877 688999999999999998874
No 99
>PRK12831 putative oxidoreductase; Provisional
Probab=79.29 E-value=3 Score=39.95 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||-..|. .+-.|+.+|+.+|..|...|.
T Consensus 424 Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999998876 788999999999999988773
No 100
>PRK06753 hypothetical protein; Provisional
Probab=79.15 E-value=3.7 Score=37.36 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=34.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.+|+++++|++|+..++++.|++++|....+|.||-|--..
T Consensus 111 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 111 DAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred ceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 47999999999998888999988777677999999987743
No 101
>PRK13984 putative oxidoreductase; Provisional
Probab=79.11 E-value=2.9 Score=41.28 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=33.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..++||.+||-..+..+-.|+..|+.+|..|...|.
T Consensus 566 Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999998888999999999999988773
No 102
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=79.03 E-value=4.2 Score=38.06 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=33.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|++|...++.|.+.++++ .+.+|.||+|+..
T Consensus 120 v~i~~~~~V~~i~~~~~~~~v~~~~~-~i~ad~VIlAtG~ 158 (400)
T TIGR00275 120 VEILTNSKVKSIKKDDNGFGVETSGG-EYEADKVILATGG 158 (400)
T ss_pred CEEEeCCEEEEEEecCCeEEEEECCc-EEEcCEEEECCCC
Confidence 68999999999988888888877544 6789999999986
No 103
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=78.79 E-value=3.7 Score=39.50 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=32.6
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
+..++||.+||-..|. .+-.|+..|+.+|..|...|..
T Consensus 442 Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 442 TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999998776 6788999999999999988854
No 104
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=78.75 E-value=3.6 Score=37.34 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=34.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
++|+.+++|++|...+++|.+.+.+|..+.+|.||.|....
T Consensus 122 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 122 VTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred cEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 68999999999998888998887667678999999886643
No 105
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.67 E-value=3.9 Score=37.31 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l 199 (246)
+..++||.|||-..+. .+..|+.+|..+|..|.+.+
T Consensus 313 t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 313 TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 3468999999988755 78899999999999998776
No 106
>PLN02661 Putative thiazole synthesis
Probab=77.65 E-value=3.2 Score=38.62 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCccchhcccCCcccc
Q 043717 165 PHGRAGICGNWL--------LGSSVESAALSGMALANHIADYLGSGGVRPEEFAVGLHNEFQL 219 (246)
Q Consensus 165 ~~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l~~~~~~~~~~~~~~~~~~~~ 219 (246)
-+||||+||--. -|+...+-+.||+.+|+.|++.|......-++....+|.+.-|
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTYKPNLHPELVL 347 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHccchhhcchhhhccchhhhh
Confidence 468999999543 3668999999999999999999974322223334455555444
No 107
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.49 E-value=4.4 Score=39.24 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=35.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
++++++++|..|...++.+.+...++..+.||.||+|+-+.
T Consensus 282 v~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 282 IDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 68999999999988877888877666678999999999864
No 108
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=77.04 E-value=4.5 Score=37.13 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=35.8
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++|+.+++|+++...+++|.|.++++..+.+|.||.|.-...
T Consensus 127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 3678899999999988889998876666789999999987544
No 109
>PRK07846 mycothione reductase; Reviewed
Probab=76.92 E-value=4.9 Score=38.20 Aligned_cols=103 Identities=12% Similarity=-0.058 Sum_probs=64.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|++++..+++..+.+.++..+++|.||+|+....-..+|.. +
T Consensus 221 v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~-------------------~----------- 270 (451)
T PRK07846 221 WDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDA-------------------A----------- 270 (451)
T ss_pred eEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCc-------------------h-----------
Confidence 6899999999998877677776666667899999999764221111110 0
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-+|+.. .+--++.|-. .+.+..|+||.|||-.... ....|.+.|+.+|+.|+.
T Consensus 271 -~~gl~~---~~~G~i~Vd~-------------~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 271 -AAGVDV---DEDGRVVVDE-------------YQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred -hcCceE---CCCCcEeECC-------------CcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcC
Confidence 011100 0000111111 1235568999999988764 566788899988888864
No 110
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.52 E-value=4.8 Score=37.05 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=37.0
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
.++|+.+++|++++..+++++|++.+|.++.+|.||.|.-....
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 37899999999999988889888877778899999998875443
No 111
>PRK08163 salicylate hydroxylase; Provisional
Probab=75.10 E-value=5.1 Score=36.76 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=35.6
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++++++++|+++...++++.+.+.++..+.+|.||.|.-...
T Consensus 124 ~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 124 LVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred CcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcCh
Confidence 3789999999999988888988876666789999999986443
No 112
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.96 E-value=5.4 Score=37.75 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=64.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc---eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK---PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLE 124 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g---~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~ 124 (246)
++|+++++|.+|...++++.+.+.++ ..+++|.||+|+.......++.
T Consensus 228 V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~----------------------------- 278 (462)
T PRK06416 228 IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLG----------------------------- 278 (462)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCC-----------------------------
Confidence 78999999999998877777765333 5678999999976422111110
Q ss_pred HHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 125 GVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 125 eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+ +-.|+.. .--++.+-. .+.+..|+||.+||-..+. ....|+..|..+|+.|..
T Consensus 279 -l-~~~gl~~----~~g~i~vd~-------------~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 279 -L-EELGVKT----DRGFIEVDE-------------QLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred -c-hhcCCee----cCCEEeECC-------------CCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 0 0011100 000111111 1224568999999988655 788899999999998874
No 113
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=74.95 E-value=4.1 Score=40.68 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=31.7
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||-..|. .+-.|+..|+.+|..|...|.
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999998887 468999999999999988763
No 114
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.74 E-value=6.2 Score=39.54 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhcCC
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
+..++||.+||-..+. .+-.|+..|+.+|..|...+...
T Consensus 464 Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 464 TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4568999999998776 67899999999999999888643
No 115
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=74.47 E-value=6 Score=37.59 Aligned_cols=103 Identities=13% Similarity=-0.040 Sum_probs=65.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|.++...++++.+...++..+++|.||+++.-..-..+|.. +.
T Consensus 224 I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~-------------------~~---------- 274 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDA-------------------EA---------- 274 (452)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCc-------------------hh----------
Confidence 6899999999998877777776655657899999999864221112110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.|+.. ..--++.+- ..+.+..|+||.+||-.... -..-|.+.|..+|+.|..
T Consensus 275 --~gl~~---~~~G~i~vd-------------~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 275 --AGVEV---DEDGRIKVD-------------EYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred --cCeeE---CCCCcEeeC-------------CCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcC
Confidence 11110 000111111 11235678999999988664 555688999999988874
No 116
>PRK05868 hypothetical protein; Validated
Probab=74.03 E-value=6.3 Score=36.35 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=37.9
Q ss_pred cceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH-HHHHhh
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
..++++++++|++|+..++++.|++.++.+..+|-||-|--.. ..++++
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 3478999999999988888899888777678899998887633 344444
No 117
>PLN02507 glutathione reductase
Probab=73.32 E-value=7 Score=37.77 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=65.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++|+++++|.++...+++..+.++++..+++|.||+++.-..-..+|. .+.
T Consensus 259 I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~-------------------l~~---------- 309 (499)
T PLN02507 259 INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLN-------------------LEA---------- 309 (499)
T ss_pred CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCC-------------------chh----------
Confidence 789999999999887777777766666789999999976321111110 000
Q ss_pred HHhCCCCCCCCCC-ceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKP-IYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p-~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+|+.. .. -++.|. ..+.+..|+||.+||-..+. ...-|...|..+|+.|..
T Consensus 310 --~gl~~----~~~G~I~Vd-------------~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 310 --VGVEL----DKAGAVKVD-------------EYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred --hCcEE----CCCCcEecC-------------CCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcC
Confidence 01100 00 011111 11234668999999998765 678899999999998864
No 118
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.19 E-value=5.7 Score=38.01 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..++||.+||...+. .+-.|+..|+.+|..|...|.
T Consensus 429 T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 3468999999999877 568899999999999988764
No 119
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.16 E-value=5.2 Score=39.16 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=33.0
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
+..++||.+||-..|. ++-.|+..|+.+|..|...+..
T Consensus 407 ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 407 TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4568999999998866 7899999999999999888753
No 120
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=73.02 E-value=5.8 Score=38.45 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=32.7
Q ss_pred eeeecCceeeEEEEeCCe-EEEEeC---Cc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WHLREN---VK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~l~~~---~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|++|.+.+++ |.+... .+ ..+.+|.||+++-++.
T Consensus 199 v~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 199 FELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred eEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 689999999999986554 877642 23 2578999999998765
No 121
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=72.92 E-value=6.2 Score=37.46 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=32.1
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||...+. .+-.|+..|..+|..|...+.
T Consensus 415 Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 415 TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 4468999999998775 788999999999999988875
No 122
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=72.86 E-value=7.3 Score=37.13 Aligned_cols=102 Identities=13% Similarity=-0.034 Sum_probs=65.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++|+++++|.+|+..++++.+.+.++..+++|.||+++....-..+|. .+.
T Consensus 233 V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~-------------------l~~---------- 283 (466)
T PRK07845 233 MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLG-------------------LEE---------- 283 (466)
T ss_pred cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCC-------------------chh----------
Confidence 789999999999887777777765666789999999966321111100 000
Q ss_pred HHhCCCCCCCCCC-ceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKP-IYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p-~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.|+.. .+ -++.+-++ +.+..|+||.+||-..+. ...-|+..|..+|+.|+.
T Consensus 284 --~gl~~----~~~G~i~Vd~~-------------~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 284 --AGVEL----TPSGHITVDRV-------------SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred --hCceE----CCCCcEeECCC-------------cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcC
Confidence 11110 01 11222211 224568999999998764 788899999999988874
No 123
>PRK06834 hypothetical protein; Provisional
Probab=72.58 E-value=6.8 Score=37.76 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=35.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|++|+..++++.+...++..+.+|.||.|.-...
T Consensus 115 v~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 115 VPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred CEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 689999999999999889988776665789999999876433
No 124
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=72.32 E-value=4.7 Score=35.50 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 165 PHGRAGICGNWL--------LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 165 ~~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
-+||||+||=.. -|+...+-+.||+.+|+.|++.|.+
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 468999998543 3668899999999999999998864
No 125
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=72.06 E-value=5.2 Score=41.97 Aligned_cols=38 Identities=21% Similarity=0.065 Sum_probs=33.4
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
+..|+||.+||-..|. .+-.|+..|+.||..|...|.-
T Consensus 590 Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 590 TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999999887 7899999999999999887753
No 126
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=72.05 E-value=7.2 Score=36.20 Aligned_cols=39 Identities=21% Similarity=0.037 Sum_probs=31.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.++.. ++.+.+.+.+|..+.+|.||+++..
T Consensus 201 V~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 201 VRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred CEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 68999999999976 5566776666667899999998764
No 127
>PLN02697 lycopene epsilon cyclase
Probab=71.02 E-value=55 Score=32.14 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=80.1
Q ss_pred eeeecCceeeEEEEeCCeEEE-EeCCceeeccCEEEEcCCHHHHHHhhccC----C------------------hHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHL-RENVKPRGQFDVVVIAHNGKCANWLLGSS----G------------------LPQIAR 104 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l-~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~----~------------------~~~la~ 104 (246)
+++ ++++|+.|...++++.+ .+.++..+.+|.||.|+-+... +++... . .+....
T Consensus 207 V~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~-rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~v 284 (529)
T PLN02697 207 VSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG-RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMV 284 (529)
T ss_pred CEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh-hhhccccCCCCcccEEEEEEEEEecCCCCCcchhe
Confidence 455 67899999887777764 3455557899999999887663 232200 0 000000
Q ss_pred Hhh--------------------------------hh-----CCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCceeeeee
Q 043717 105 QMK--------------------------------EN-----IPTATAEKVKKGMLEGVEAALGRPKGSLQKPIYTRVHL 147 (246)
Q Consensus 105 ~L~--------------------------------~~-----~~~~~~eel~~~ll~eL~~llg~~~~~~~~p~~~~v~R 147 (246)
.|+ +. .+..+.+.+.+.+.+-++. .|+.. ..+.+
T Consensus 285 lMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~-~Gi~~--------~~i~~ 355 (529)
T PLN02697 285 FMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLET-MGIRI--------LKTYE 355 (529)
T ss_pred eeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHh-CCCCc--------ceEEE
Confidence 011 00 1123556666666666654 36521 12222
Q ss_pred cC-ccCCCCCCCCCCccCCCCCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 148 WG-AALPTNTPSIPCIFDPHGRAGICGNWLL------GSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 148 W~-~A~P~~~~g~~~~~~~~~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
.. -.+|-..+ .+ ...+++...||--+ |.+|-.++.+|..+|+.|.+.+..+
T Consensus 356 ~E~g~iPm~g~-~~---~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 356 EEWSYIPVGGS-LP---NTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred EEeeeecCCCC-Cc---ccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 22 33444221 11 11457778887543 5589888999999999999888755
No 128
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=70.53 E-value=4.8 Score=37.07 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.0
Q ss_pred eeecCceeeEEEEeCC----eEEEEe----CCceeeccCEEEEcCC
Q 043717 49 SIVRPCWISNLEPFNG----MWHLRE----NVKPRGQFDVVVIAHN 86 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~----~w~l~~----~~g~~~~aD~VVlA~P 86 (246)
.++++++|++|++..+ .|+|.+ +++....+++|||++.
T Consensus 111 ~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 111 QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 4999999999998754 488876 2346789999999886
No 129
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=70.41 E-value=5.5 Score=35.07 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWL--------LGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
-+||||+||=.. -|+...+-+.||+++|+.|++.+
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 368999999543 36688999999999999999876
No 130
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.03 E-value=8.4 Score=36.02 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=31.5
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCC-ceeec--cCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENV-KPRGQ--FDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~-g~~~~--aD~VVlA~Pa 87 (246)
.++++++++|+.|.+.++.+.+...+ +..+. ||.|||||-+
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC
Confidence 46888999999998877777776532 34556 9999999864
No 131
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=70.01 E-value=11 Score=36.57 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=39.1
Q ss_pred ceeeecCceeeEEEEeCCe-EEEEe----C-CceeeccCEEEEcCCHHHHHHhhccC
Q 043717 47 MVSIVRPCWISNLEPFNGM-WHLRE----N-VKPRGQFDVVVIAHNGKCANWLLGSS 97 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~-w~l~~----~-~g~~~~aD~VVlA~Pa~~A~~LL~~~ 97 (246)
..+|+++++|+.|.+.+++ |.|.. . ....+.++.|+|-+-... ..||...
T Consensus 196 ~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqks 251 (488)
T PF06039_consen 196 GFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKS 251 (488)
T ss_pred CcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHc
Confidence 3699999999999998766 99864 1 225778999999988774 4677654
No 132
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=69.96 E-value=6.4 Score=40.05 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=32.2
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||-..|. .+-.|+.+|+.+|..|...+.
T Consensus 713 Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999998877 688999999999999988763
No 133
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=69.21 E-value=8 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=29.8
Q ss_pred eeeecCceeeEEEEe--CCeEEEEeCCcee--eccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPF--NGMWHLRENVKPR--GQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~--~~~w~l~~~~g~~--~~aD~VVlA~Pa 87 (246)
-+|+.+++|..+..+ ++.|.|+++++.. +.+|.||+|+-.
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 367777777777665 4689998866633 459999999876
No 134
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.44 E-value=9.3 Score=35.82 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=32.2
Q ss_pred ceeeecCceeeEEEEeCCeEEEEe-CCceeec--cCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRE-NVKPRGQ--FDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~-~~g~~~~--aD~VVlA~Pa~ 88 (246)
.++++++++|.+|...++.+.+.. .++..+. ||.+||||-..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 368889999999998888887764 2233445 99999998753
No 135
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=68.33 E-value=6.8 Score=34.03 Aligned_cols=35 Identities=17% Similarity=-0.030 Sum_probs=29.2
Q ss_pred CCCCCEEEEcCCCC--CCCHHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLL--GSSVESAALSGMALANHIADY 198 (246)
Q Consensus 164 ~~~~gL~laGDw~~--G~~ie~Av~SG~~aA~~l~~~ 198 (246)
...|+||.+||-.. ...+..|+.+|..+|..|...
T Consensus 263 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 263 TSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred cCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhh
Confidence 45689999999886 347889999999999988764
No 136
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=67.13 E-value=10 Score=36.63 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=32.5
Q ss_pred eeeecCceeeEEEEeC-CeEEEEe---CCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFN-GMWHLRE---NVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~-~~w~l~~---~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|++|++.+ ++|.+.. +++ ..+.+|.||+|+-++.
T Consensus 193 v~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 193 TTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 6899999999999865 4688753 222 3578999999998654
No 137
>PRK07190 hypothetical protein; Provisional
Probab=66.78 E-value=11 Score=36.23 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=36.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
++|+++++|++|+..++++.+...++..+.++.||.|.-....
T Consensus 124 v~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 124 AAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred CEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 6899999999999988888877655667899999999886553
No 138
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=66.78 E-value=7.8 Score=36.34 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCCCEEEEcCCC-----CCC-CHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWL-----LGS-SVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~-----~G~-~ie~Av~SG~~aA~~l~~~l 199 (246)
...||||+||--+ .|+ .+.-||.||..|++.+...+
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5679999999433 344 99999999999998887654
No 139
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.77 E-value=9.8 Score=35.30 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=31.5
Q ss_pred cceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++++++++.|..|.+.... |...+|..+.||.|||||-+.
T Consensus 71 ~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCC
Confidence 45899999999999886543 334555578999999998754
No 140
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=66.71 E-value=7.8 Score=39.75 Aligned_cols=40 Identities=5% Similarity=0.067 Sum_probs=32.0
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++++++++|+.|.+.. ..|.+.+|..+.||.|||||-+.
T Consensus 68 gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCC
Confidence 48999999999998765 34555666678999999999754
No 141
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=66.64 E-value=10 Score=36.63 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=34.4
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCC---c--eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENV---K--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~---g--~~~~aD~VVlA~Pa~~ 89 (246)
+++|..+++|++|...+++|.|...+ + ..+.++.||.|+-++.
T Consensus 169 Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 169 GAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 37899999999999888888776532 3 3678999999999754
No 142
>PRK08013 oxidoreductase; Provisional
Probab=66.51 E-value=9.9 Score=35.23 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=35.3
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++|+++++|++|+..++++.++..+|.++.+|-||-|--...
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 3689999999999988888988876666789999998877443
No 143
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=66.21 E-value=12 Score=35.79 Aligned_cols=39 Identities=3% Similarity=-0.090 Sum_probs=31.0
Q ss_pred eeeecCceeeEEEEeCCe--EEEEeCCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGM--WHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~--w~l~~~~g~~~~aD~VVlA~P 86 (246)
.+++++++|.+|...+++ +.|.+.+|+.+.++.||+...
T Consensus 247 g~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 247 GTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred cEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 589999999999877544 567776776788999998543
No 144
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.03 E-value=8.4 Score=36.58 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.4
Q ss_pred ceeeecCceeeEEEEeCCe-EEEEe----CCc-eeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGM-WHLRE----NVK-PRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~-w~l~~----~~g-~~~~aD~VVlA~Pa~ 88 (246)
.+.++.++.|.+++..++| ++|.+ .++ .+.+.|+||+||-=.
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3788999999999998877 88765 222 567899999998755
No 145
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.93 E-value=12 Score=36.13 Aligned_cols=48 Identities=21% Similarity=0.072 Sum_probs=37.0
Q ss_pred eeeecCceeeEEEEeCC-eEEEEeCCceeeccCEEEEcCCHHHHHHhhc
Q 043717 48 VSIVRPCWISNLEPFNG-MWHLRENVKPRGQFDVVVIAHNGKCANWLLG 95 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~-~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~ 95 (246)
++|+++++|.+|...++ +..++..++..+.+|.||.++-+.....|++
T Consensus 239 g~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~ 287 (487)
T COG1233 239 GEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG 287 (487)
T ss_pred CEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence 79999999999998765 4667665555678999999988854444443
No 146
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=65.41 E-value=11 Score=36.25 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=32.1
Q ss_pred eeeecCceeeEEEEeCCeE-EEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMW-HLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w-~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++|+|..|...++.. .+...+|.++.+|.||+|.-.
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 7999999999999887643 455566778899999999653
No 147
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=65.36 E-value=12 Score=35.27 Aligned_cols=102 Identities=12% Similarity=0.033 Sum_probs=62.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++++++++|.+|...++++.+..+++ .+.+|.||+|+....-..+|. .+
T Consensus 214 V~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~-------------------~~----------- 262 (441)
T PRK08010 214 VDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLH-------------------PE----------- 262 (441)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcC-------------------ch-----------
Confidence 78999999999988777777766555 478999999965321111110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+.. ..--++.+-. .+.+..|+||.+||-..+. ...-|+..|+.+++.|+.
T Consensus 263 -~~gl~~---~~~G~i~vd~-------------~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 263 -NAGIAV---NERGAIVVDK-------------YLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred -hcCcEE---CCCCcEEECC-------------CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 011100 0000111211 1224468999999998765 667788888888888764
No 148
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.04 E-value=13 Score=34.14 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=34.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++++++++|++|...++++.|..+++ ++.+|-||.|--...
T Consensus 120 v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 120 ITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred cEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 67899999999999888999888766 789999998877443
No 149
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=64.86 E-value=14 Score=34.90 Aligned_cols=42 Identities=14% Similarity=0.024 Sum_probs=32.0
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++|+.+++|++|...++++.....++..+.+|.||+|+-..
T Consensus 122 Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 122 GAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 378999999999988777764333344467999999998743
No 150
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.69 E-value=13 Score=34.99 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P 86 (246)
++++++++|.+|...++.+.+..++ ..+.+|.||+|+-
T Consensus 213 I~i~~~~~V~~i~~~~~~v~v~~~g-~~i~~D~viva~G 250 (438)
T PRK07251 213 ITFLLNAHTTEVKNDGDQVLVVTED-ETYRFDALLYATG 250 (438)
T ss_pred CEEEcCCEEEEEEecCCEEEEEECC-eEEEcCEEEEeeC
Confidence 7899999999998876667665544 4789999999865
No 151
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=64.57 E-value=18 Score=35.69 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=37.6
Q ss_pred cceeeecCceeeEEEEeCC---eE---EEEe-CCc--eeeccCEEEEcCCHHHHHHhhcc
Q 043717 46 SMVSIVRPCWISNLEPFNG---MW---HLRE-NVK--PRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~---~w---~l~~-~~g--~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
+.++|++++.|++|..+++ +. .+.+ +++ ..+.|+.||||+-+=+..+||-.
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 3489999999999987642 23 2222 123 45789999999999999998843
No 152
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.55 E-value=12 Score=36.04 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=34.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc----eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK----PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g----~~~~aD~VVlA~Pa~~ 89 (246)
++|+.+++|++|.+.++.|.|...++ ..+.+|.||.|+-++.
T Consensus 170 a~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 170 ATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 69999999999999888888765332 3578999999999754
No 153
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=64.08 E-value=16 Score=31.95 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=36.5
Q ss_pred ceeeecCceeeEEEEe--CCe---EEEEeCCc----eeeccCEEEEcCCHHHHHHhhccC
Q 043717 47 MVSIVRPCWISNLEPF--NGM---WHLRENVK----PRGQFDVVVIAHNGKCANWLLGSS 97 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~--~~~---w~l~~~~g----~~~~aD~VVlA~Pa~~A~~LL~~~ 97 (246)
+++|+++++|.+|... +++ +.+...++ ....++.||||+-+-.+.+||-.+
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence 4899999999999665 333 23333333 345689999999999999998654
No 154
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=64.05 E-value=12 Score=34.31 Aligned_cols=39 Identities=13% Similarity=0.343 Sum_probs=29.8
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++++++++|.+|..... .|.+++ ..+.||.|||||-+.
T Consensus 72 gv~~~~~~~V~~id~~~~--~v~~~~-~~~~yd~LVlATG~~ 110 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQ--VVKSQG-NQWQYDKLVLATGAS 110 (377)
T ss_pred CCEEECCCEEEEEECCCC--EEEECC-eEEeCCEEEECCCCC
Confidence 478999999999987653 444444 467999999998753
No 155
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=63.95 E-value=13 Score=33.98 Aligned_cols=46 Identities=17% Similarity=-0.001 Sum_probs=35.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH-HHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK-CANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~-~A~~LL 94 (246)
++++ +++|++|...++++.|.++++.++.+|.||.|.-.. ..++.+
T Consensus 127 v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 127 LTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred cEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 5677 999999988888899887666568899999988853 333443
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=63.64 E-value=11 Score=26.49 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=22.4
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCc
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVK 73 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g 73 (246)
.++|++++.|.+|...+++++|.+.||
T Consensus 54 gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 489999999999999988877766543
No 157
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=62.99 E-value=14 Score=39.24 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+..|+||.+||-..|+ ++-.|+..|+.+|..|+....
T Consensus 805 Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 805 TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 4568999999998766 889999999999999987654
No 158
>PRK06184 hypothetical protein; Provisional
Probab=62.92 E-value=15 Score=35.15 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=35.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEe---CCceeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE---NVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~---~~g~~~~aD~VVlA~Pa~~A 90 (246)
++|+++++|++|+..++++.+.. +++..+.+|.||.|.-+...
T Consensus 124 v~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 124 HRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred CEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 68999999999998888887765 45567899999999886653
No 159
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=62.80 E-value=14 Score=34.85 Aligned_cols=42 Identities=2% Similarity=0.040 Sum_probs=32.5
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCC-c--eeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENV-K--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~-g--~~~~aD~VVlA~Pa~ 88 (246)
.++++++++|.+|...++.+.+...+ + ..+.||.+||||-..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 47899999999999988888776532 2 235899999998643
No 160
>PRK14694 putative mercuric reductase; Provisional
Probab=62.70 E-value=15 Score=35.03 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=63.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++|+++++|.+|...++.+.+.++++ .+.+|.||+|+.......++. .+
T Consensus 233 I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~-------------------l~----------- 281 (468)
T PRK14694 233 IEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLN-------------------LE----------- 281 (468)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCC-------------------ch-----------
Confidence 78999999999987777677766555 689999999976422111110 00
Q ss_pred HHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-+|+.. .--++.+-. .+.+..|+||.+||-.... .+.-|+..|..+|..|+.
T Consensus 282 -~~g~~~----~~G~i~vd~-------------~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 282 -SIGVET----ERGAIRIDE-------------HLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred -hcCccc----CCCeEeeCC-------------CcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcC
Confidence 011110 000111111 1224568999999998665 778899999999988863
No 161
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=62.39 E-value=7.5 Score=34.18 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWL--------LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.-+||||+||-.. -|+...+-+.||+.+|+.|++.|..
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 3468999998543 4779999999999999999998753
No 162
>PRK10015 oxidoreductase; Provisional
Probab=61.48 E-value=18 Score=34.11 Aligned_cols=42 Identities=10% Similarity=-0.048 Sum_probs=31.9
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++|+.+++|+.|...++++.....++..+.+|.||+|.-..
T Consensus 122 Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 122 GAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 368999999999988777776433334467999999998753
No 163
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=61.42 E-value=11 Score=40.03 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIADY 198 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~~ 198 (246)
+..++||.+||-..|+ ++..|+.+|+.+|..|+..
T Consensus 803 Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 803 TNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 4568999999988766 7899999999999999864
No 164
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.07 E-value=11 Score=36.11 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=33.2
Q ss_pred eeecCceeeEEEEeC-CeEEEEeCCc----eeeccCEEEEcCCHH
Q 043717 49 SIVRPCWISNLEPFN-GMWHLRENVK----PRGQFDVVVIAHNGK 88 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~-~~w~l~~~~g----~~~~aD~VVlA~Pa~ 88 (246)
.|++++.|..+.... +.|+|...++ ....||.||+|+-.+
T Consensus 108 ~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 108 MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 699999999999988 7999987322 355799999999887
No 165
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=60.44 E-value=13 Score=34.87 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=30.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.+|...++.+.+..+++ .+.+|.||+|+..
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~ 244 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGV 244 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCC
Confidence 68999999999976544455555555 6799999999774
No 166
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=59.83 E-value=16 Score=34.04 Aligned_cols=43 Identities=7% Similarity=-0.096 Sum_probs=33.6
Q ss_pred cceeeecCceeeEEEEeCCeEEEEe-CCceeeccCEEEEcCCHH
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRE-NVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~-~~g~~~~aD~VVlA~Pa~ 88 (246)
..++++.+++|..+...++++.+.. .++.++.++.||.|.-+.
T Consensus 108 aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 108 AGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred cCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 3479999999999999987775543 443577899999999633
No 167
>PRK07045 putative monooxygenase; Reviewed
Probab=59.43 E-value=17 Score=33.34 Aligned_cols=46 Identities=15% Similarity=-0.070 Sum_probs=35.3
Q ss_pred ceeeecCceeeEEEEeCCe--EEEEeCCceeeccCEEEEcCCHHH-HHH
Q 043717 47 MVSIVRPCWISNLEPFNGM--WHLRENVKPRGQFDVVVIAHNGKC-ANW 92 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~--w~l~~~~g~~~~aD~VVlA~Pa~~-A~~ 92 (246)
.++++++++|+.|+..+++ +.|++++|.++.+|.||-|.-... .++
T Consensus 121 gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 121 NVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred CeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 3689999999999987655 467776676788999999887543 344
No 168
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=59.32 E-value=13 Score=33.67 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=31.7
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhc
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLG 95 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~ 95 (246)
.++|+.+++|..|+.. .|.++++ .+.+|.||+|+-++.. .|++
T Consensus 160 Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~-~l~~ 202 (365)
T TIGR03364 160 GVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE-TLFP 202 (365)
T ss_pred CCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh-hhCc
Confidence 4789999999999643 5666656 4579999999997643 4544
No 169
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=59.31 E-value=13 Score=35.00 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 166 HGRAGICGNWL--------LGSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 166 ~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
.+|+.++||.- .|.+|.-|+.||..||+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999975 34699999999999999998877654
No 170
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.24 E-value=18 Score=34.30 Aligned_cols=103 Identities=13% Similarity=-0.044 Sum_probs=62.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeC--Cc--eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLREN--VK--PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGML 123 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~--~g--~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll 123 (246)
++|+++++|.++...++++.+... +| ..+++|.||+|+-...-..+| ..+
T Consensus 228 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l-------------------~l~------- 281 (466)
T PRK07818 228 VKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGY-------------------GLE------- 281 (466)
T ss_pred CEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCC-------------------Cch-------
Confidence 799999999999887666665432 34 468999999996531110000 000
Q ss_pred HHHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 124 EGVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 124 ~eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+.. ..--++.+- ..+.+..|+||.+||-..+. ....|+..|..+|+.|+.
T Consensus 282 -----~~g~~~---~~~g~i~vd-------------~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 282 -----KTGVAL---TDRGAIAID-------------DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred -----hcCcEE---CCCCcEeeC-------------CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 011100 000011111 11234568999999998764 777899999999998864
No 171
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=59.14 E-value=11 Score=35.78 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCCCEEEEcC------CCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGN------WLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGD------w~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
..-||||+||. |++|=.+..||.||..|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 45699999994 3445599999999999999887654
No 172
>PRK06370 mercuric reductase; Validated
Probab=59.04 E-value=21 Score=33.87 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=62.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEe---CCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE---NVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLE 124 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~---~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~ 124 (246)
++|+++++|.+|...+++..+.. +++..+++|.||+|+....-.. .+..+.
T Consensus 227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~-------------------~l~l~~------- 280 (463)
T PRK06370 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD-------------------DLGLEA------- 280 (463)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC-------------------CcCchh-------
Confidence 78999999999988766655433 2335689999999976311100 000000
Q ss_pred HHHHHhCCCCCCCCCC-ceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 125 GVEAALGRPKGSLQKP-IYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 125 eL~~llg~~~~~~~~p-~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.|+.. .+ -++.+.. .+.+..|+||.+||-..+. ....|...|..+|+.|+.
T Consensus 281 -----~g~~~----~~~G~i~vd~-------------~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 281 -----AGVET----DARGYIKVDD-------------QLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred -----hCceE----CCCCcEeECc-------------CCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 11100 00 0111111 1234568999999988765 667899999999998874
No 173
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=58.11 E-value=21 Score=33.26 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 166 HGRAGICGNWL------LGSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 166 ~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
.+++.++||.- .|.+|.-|++||..||+.+.+.+..+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~ 311 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLG 311 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999964 47799999999999999999877554
No 174
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=57.64 E-value=20 Score=36.22 Aligned_cols=41 Identities=15% Similarity=-0.046 Sum_probs=34.6
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++++++|++|+..++++.+.+.++.++.+|.||.|--...
T Consensus 208 ~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 208 VIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 37889999999998899998887776778999999887544
No 175
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=57.48 E-value=22 Score=33.75 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=62.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc-eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK-PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGV 126 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g-~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL 126 (246)
++|+++++|.+|...++.+.+..+++ ..+.+|.||+|+....-...| ..+
T Consensus 226 I~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l-------------------~l~---------- 276 (458)
T PRK06912 226 VKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQL-------------------NLE---------- 276 (458)
T ss_pred CEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCC-------------------Cch----------
Confidence 78999999999987766666654433 367899999998731110000 000
Q ss_pred HHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 127 EAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 127 ~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
..|+.. ....+.|- ..+.+..|+||.+||-..+. ...-|+..|..+|..|..
T Consensus 277 --~~gv~~----~~~gi~Vd-------------~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 277 --KAGVQF----SNKGISVN-------------EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred --hcCcee----cCCCEEeC-------------CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 011100 00111111 11224568999999998765 677899999999988764
No 176
>PRK13748 putative mercuric reductase; Provisional
Probab=56.66 E-value=21 Score=34.67 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=63.7
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEGVE 127 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~eL~ 127 (246)
++|+++++|.+|+..++.+.+.++++ .+.+|.||+|+....-..+|. .+.
T Consensus 325 I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~-------------------l~~---------- 374 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLA-------------------LDA---------- 374 (561)
T ss_pred CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcC-------------------chh----------
Confidence 78999999999988777777766555 579999999976321111110 000
Q ss_pred HHhCCCCCCCCCC-ceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 128 AALGRPKGSLQKP-IYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 128 ~llg~~~~~~~~p-~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.|+.. .. -++.|-+ .+.+..|+||.+||-.... .+.-|+..|..+|..|..
T Consensus 375 --~g~~~----~~~g~i~vd~-------------~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 375 --AGVTV----NAQGAIVIDQ-------------GMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred --cCceE----CCCCCEeECC-------------CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 01100 00 0111111 1234568999999998765 677889999999988863
No 177
>PRK06475 salicylate hydroxylase; Provisional
Probab=55.82 E-value=21 Score=33.03 Aligned_cols=43 Identities=5% Similarity=-0.142 Sum_probs=33.1
Q ss_pred ceeeecCceeeEEEEeCCeEEEEe---CCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRE---NVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~---~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++|+++++|+++...++++.++. +++..+.+|-||-|--...
T Consensus 122 ~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 122 GIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred CcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 368999999999998888887765 3335678999998876444
No 178
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=55.82 E-value=21 Score=33.84 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=62.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEe--C-CceeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE--N-VKPRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLE 124 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~--~-~g~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~ 124 (246)
++|+++++|.+|...++.+.+.. + ++..+++|.||+|+....-.. .+..+.
T Consensus 222 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~-------------------~l~l~~------- 275 (463)
T TIGR02053 222 IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD-------------------GLGLEK------- 275 (463)
T ss_pred CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC-------------------CCCccc-------
Confidence 79999999999988766665544 2 235789999999976311100 000000
Q ss_pred HHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 125 GVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 125 eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.++.. .+--++.+-. .+.+..|+||.+||-..+. ...-|+..|..+|..|+.
T Consensus 276 -----~g~~~---~~~G~i~vd~-------------~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 276 -----AGVKL---DERGGILVDE-------------TLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred -----cCCEE---CCCCcEeECC-------------CccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcC
Confidence 01100 0000111111 1224568999999988766 567899999999998874
No 179
>PRK06996 hypothetical protein; Provisional
Probab=55.39 E-value=22 Score=32.95 Aligned_cols=47 Identities=11% Similarity=-0.125 Sum_probs=36.2
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc---eeeccCEEEEcCCH--HHHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK---PRGQFDVVVIAHNG--KCANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g---~~~~aD~VVlA~Pa--~~A~~LL 94 (246)
++++++++|++++..+++|++...++ ..+.+|.||-|--. ....+++
T Consensus 130 ~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 130 VRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred CEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 67999999999999899999886432 57899999999663 4444554
No 180
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=55.28 E-value=16 Score=33.14 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=29.2
Q ss_pred CCCCEEEEcCCCCC------CCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLLG------SSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~G------~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
..|+||.+||-... .....|+..|..+|+.|...+.
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 57899999998742 1456799999999999988874
No 181
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=54.18 E-value=22 Score=34.17 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=67.6
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCce--eeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKP--RGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLEG 125 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~--~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~e 125 (246)
++++++++|..++..+++..+.++++. .+++|.|++|+--. ++...+..|++
T Consensus 229 v~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~-------------------Pn~~~LgLe~~------- 282 (454)
T COG1249 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK-------------------PNTDGLGLENA------- 282 (454)
T ss_pred eEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc-------------------cCCCCCChhhc-------
Confidence 689999999999998777777665553 67899999996521 01112222222
Q ss_pred HHHHhCCCCCCCCCCc-eeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 126 VEAALGRPKGSLQKPI-YTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 126 L~~llg~~~~~~~~p~-~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
|++. ... ++.|-+ .+.+..|+||.|||.+.+. --.-|...|+.+|+.|+.
T Consensus 283 -----Gv~~----~~rg~I~VD~-------------~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 283 -----GVEL----DDRGFIKVDD-------------QMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred -----CceE----CCCCCEEeCC-------------ccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 3211 111 222221 1123358999999998887 888899999999999986
No 182
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=53.07 E-value=25 Score=32.94 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=30.0
Q ss_pred eeeecCceeeEEEEeCC----eEEEEeCCce--eeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNG----MWHLRENVKP--RGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~----~w~l~~~~g~--~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|++|...++ ++.+...++. .+.+|.||+|+-...
T Consensus 145 v~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 145 IDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred CEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 68999999999988543 2344434442 457899999987544
No 183
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=52.76 E-value=33 Score=32.17 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCCCEEEEcCCCCC------CCHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLLG------SSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~G------~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
...|+||.+||-... .....|+++|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 467899999997752 3677899999999999998874
No 184
>PRK06175 L-aspartate oxidase; Provisional
Probab=52.75 E-value=28 Score=32.99 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=30.7
Q ss_pred ceeeecCceeeEEEEeCCeE---EEEeCCc-eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMW---HLRENVK-PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w---~l~~~~g-~~~~aD~VVlA~Pa~~ 89 (246)
.++|+++|+|+.|...+++. .+..+++ ..+.++.||||+-...
T Consensus 143 gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 143 NITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred CCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 47999999999998765542 2223333 2578999999998743
No 185
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=51.88 E-value=24 Score=36.16 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=32.0
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.+|...+....|.+.+|..+++|.||+++..
T Consensus 197 V~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 197 LTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred CEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 6899999999997655445566666768899999999873
No 186
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=50.95 E-value=29 Score=31.71 Aligned_cols=41 Identities=15% Similarity=-0.157 Sum_probs=32.1
Q ss_pred eeeecCceeeEEEEe-CCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPF-NGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~-~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++++ .++|..+... ++.|.|.++++..+.+|.||.|+....
T Consensus 100 v~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 100 VLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4554 5678888877 677888876666789999999999765
No 187
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=50.62 E-value=32 Score=32.31 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=29.3
Q ss_pred eeeecCceeeEEEEeC-CeEE--EEe-CCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFN-GMWH--LRE-NVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~-~~w~--l~~-~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|++|...+ +++. +.. .++..+.++.||||+-.
T Consensus 138 v~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 138 VEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred CEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 6999999999998763 4443 233 23346789999999984
No 188
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=50.34 E-value=20 Score=33.51 Aligned_cols=38 Identities=13% Similarity=-0.051 Sum_probs=28.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++++++|.+|...+. . +...++..+.+|.||+|++.
T Consensus 194 V~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 194 INLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGI 231 (427)
T ss_pred CEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCc
Confidence 78999999999976543 3 33444557899999999876
No 189
>PLN02852 ferredoxin-NADP+ reductase
Probab=50.15 E-value=14 Score=35.94 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=32.3
Q ss_pred CCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHHhcC
Q 043717 165 PHGRAGICGNWLLGS--SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 165 ~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
..||||.|||...|+ -|-.++..|..+|+.|++++..
T Consensus 385 ~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 385 TEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 358999999999988 5889999999999999988754
No 190
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=49.95 E-value=32 Score=33.21 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.3
Q ss_pred eeeecCceeeEEEEeCCe---EEEEeCCc--eeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGM---WHLRENVK--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~---w~l~~~~g--~~~~aD~VVlA~Pa~ 88 (246)
++|+++++|++|...+++ +.+...++ ..+.+|.||+|+-..
T Consensus 205 v~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 205 IPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred CeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 689999999999876654 44443443 357899999999743
No 191
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=49.90 E-value=38 Score=33.08 Aligned_cols=42 Identities=17% Similarity=-0.077 Sum_probs=31.5
Q ss_pred eeeecCceeeEEEEeCCeEE-EEe----CC-ceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRE----NV-KPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~----~~-g~~~~aD~VVlA~Pa~~ 89 (246)
++|.++++|++|.+.++++. +.. ++ +..+.+|.||+|+-++.
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 68999999999998876542 332 22 24678999999998764
No 192
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=49.73 E-value=37 Score=32.78 Aligned_cols=42 Identities=17% Similarity=0.019 Sum_probs=31.6
Q ss_pred eeeecCceeeEEEEeCCeE-EEEe----CCc-eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMW-HLRE----NVK-PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w-~l~~----~~g-~~~~aD~VVlA~Pa~~ 89 (246)
++|.++++|++|.+.++++ .+.. +++ ..+.++.||.|+-++.
T Consensus 143 a~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 143 ARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 6899999999999887764 2332 222 3678999999998654
No 193
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=49.41 E-value=24 Score=36.62 Aligned_cols=40 Identities=5% Similarity=0.045 Sum_probs=31.3
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
.++++++++|..|.+... .|.+.+|..+.||.|||||-+.
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCC
Confidence 489999999999987643 4445556678999999998754
No 194
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=48.70 E-value=15 Score=35.48 Aligned_cols=40 Identities=18% Similarity=0.019 Sum_probs=33.3
Q ss_pred CCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHHhcCCC
Q 043717 164 DPHGRAGICGNWLLGS--SVESAALSGMALANHIADYLGSGG 203 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~~l~~~~ 203 (246)
+..|+||.|||-...+ .+--|+.+|..||..+.+.+.+.+
T Consensus 474 Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 474 TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 5679999999998764 588899999999988888876654
No 195
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=48.42 E-value=35 Score=31.56 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=30.5
Q ss_pred eeeecCceeeEEEEeCCeEE---EEe-CCc--eeeccCEEEEcCCHHHHHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWH---LRE-NVK--PRGQFDVVVIAHNGKCANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~---l~~-~~g--~~~~aD~VVlA~Pa~~A~~LL 94 (246)
++|+++++|++|..++++++ +.. .++ ..+.+++||||+-.... +|+
T Consensus 156 v~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 156 VDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG-ELL 207 (417)
T ss_dssp EEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG-HHH
T ss_pred eeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc-ccc
Confidence 79999999999999877642 331 334 35679999999997665 444
No 196
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=48.36 E-value=31 Score=33.48 Aligned_cols=45 Identities=9% Similarity=-0.133 Sum_probs=35.7
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeC--Cc--eeeccCEEEEcCCHHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLREN--VK--PRGQFDVVVIAHNGKCAN 91 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~--~g--~~~~aD~VVlA~Pa~~A~ 91 (246)
.++|+++++|++|+..++++.++.. +| .++.+|.||-|.-.....
T Consensus 128 gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 3789999999999999899887663 34 467899999988765543
No 197
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.83 E-value=25 Score=31.91 Aligned_cols=36 Identities=8% Similarity=-0.095 Sum_probs=27.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++++++|.++... .+.+.++..+.+|.||++++.
T Consensus 206 V~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 206 IEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred CEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCC
Confidence 789999999988532 344555667899999999874
No 198
>PRK10262 thioredoxin reductase; Provisional
Probab=47.32 E-value=37 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=29.2
Q ss_pred cCCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHHh
Q 043717 163 FDPHGRAGICGNWLLGS--SVESAALSGMALANHIADYL 199 (246)
Q Consensus 163 ~~~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~~l 199 (246)
.+..|+||.|||-.... .+--|+..|..||..|...+
T Consensus 276 ~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 276 QTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred ccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHH
Confidence 35679999999988543 34558999999999888776
No 199
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.11 E-value=25 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCCCEEEEcCCC---------C-CCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 165 PHGRAGICGNWL---------L-GSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 165 ~~~gL~laGDw~---------~-G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
+-||||.||+-. . |.++-.|+.+|+.+++.+.+..+..
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~ 553 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSAD 553 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCC
Confidence 568999999633 2 5689999999999999988765543
No 200
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=46.64 E-value=46 Score=30.11 Aligned_cols=42 Identities=19% Similarity=0.064 Sum_probs=33.5
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
..+..++.|..+...+..|.|.+++|. +.+|+||+|+-++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 172 VIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 467779999999874356888887774 899999999997765
No 201
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=45.53 E-value=34 Score=33.12 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=36.5
Q ss_pred ceeeecCceeeEEEEeCCeE-EEEe--CCc--eeeccCEEEEcCCHHHHHHhhcc
Q 043717 47 MVSIVRPCWISNLEPFNGMW-HLRE--NVK--PRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w-~l~~--~~g--~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
+++|+++++|.+|...+++. -|.+ .++ ....++.||||+-+-.+.+||..
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 48999999999999875543 2322 322 23479999999999888888753
No 202
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.84 E-value=32 Score=32.49 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=22.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEe-CCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE-NVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~-~~g~~~~aD~VVlA~Pa 87 (246)
++++.++ ++.+ +.+.+.+.. +++..+.||.|||||-+
T Consensus 107 v~~~~g~-~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs 144 (462)
T PRK06416 107 VDIIRGE-AKLV--DPNTVRVMTEDGEQTYTAKNIILATGS 144 (462)
T ss_pred CEEEEEE-EEEc--cCCEEEEecCCCcEEEEeCEEEEeCCC
Confidence 5666654 3333 234456653 33357799999999843
No 203
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=44.39 E-value=48 Score=32.71 Aligned_cols=42 Identities=19% Similarity=0.006 Sum_probs=30.6
Q ss_pred eeeecCceeeEEEEeCCeE---EEEeCCc-eeecc-CEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMW---HLRENVK-PRGQF-DVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w---~l~~~~g-~~~~a-D~VVlA~Pa~~ 89 (246)
++|+++++|++|...++++ .+..+++ ..+.+ +.||||+-...
T Consensus 232 v~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 232 VRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred CEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 7999999999998766654 2333444 34678 99999997654
No 204
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=44.15 E-value=39 Score=31.78 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=33.6
Q ss_pred ceeeecCceeeEEEEe-------CCeEEEEeCCceeeccCEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPF-------NGMWHLRENVKPRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~-------~~~w~l~~~~g~~~~aD~VVlA~Pa~~A 90 (246)
.++++++++|.+|+.. ++++.|+..+|+++.+|.||-|--....
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4689999999999752 4567887766778899988888765443
No 205
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=44.10 E-value=23 Score=33.05 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=36.3
Q ss_pred CcceeeecCceeeEEEEeCCeEE-EEe---CCc-eeeccCEEEEcCCHHHH--HHhhc
Q 043717 45 TSMVSIVRPCWISNLEPFNGMWH-LRE---NVK-PRGQFDVVVIAHNGKCA--NWLLG 95 (246)
Q Consensus 45 p~m~~I~l~t~V~~I~~~~~~w~-l~~---~~g-~~~~aD~VVlA~Pa~~A--~~LL~ 95 (246)
|..++|.++++|+.|.+.++++. |.+ +|+ ....+|.||+|+-.... .+||+
T Consensus 157 pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLK 214 (477)
T ss_pred hHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHH
Confidence 33479999999999998877653 332 343 45679999999986554 35554
No 206
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=43.88 E-value=42 Score=32.01 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 166 HGRAGICGNWL------LGSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 166 ~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
.+++.+.||.- .|.+|.-|++||..||+.|.+.+..+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g 350 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENG 350 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 45899999975 47799999999999999999877554
No 207
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=43.03 E-value=41 Score=32.37 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=61.2
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc---eeeccCEEEEcCCHHHHHHhhccCChHHHHHHhhhhCCCCCHHHHHHHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK---PRGQFDVVVIAHNGKCANWLLGSSGLPQIARQMKENIPTATAEKVKKGMLE 124 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g---~~~~aD~VVlA~Pa~~A~~LL~~~~~~~la~~L~~~~~~~~~eel~~~ll~ 124 (246)
++|++++.+.+|...+++..+...++ ..+++|.||+|+.-. +... .+..+
T Consensus 235 V~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~------pn~~-------------~l~l~-------- 287 (484)
T TIGR01438 235 VKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD------ACTR-------------KLNLE-------- 287 (484)
T ss_pred CEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC------cCCC-------------cCCcc--------
Confidence 78999999999987766655554332 367999999997631 1110 00000
Q ss_pred HHHHHhCCCCCCCCCCceeeeeecCccCCCCCCCCCCccCCCCCEEEEcCCCCC-C-CHHHHHHHHHHHHHHHHH
Q 043717 125 GVEAALGRPKGSLQKPIYTRVHLWGAALPTNTPSIPCIFDPHGRAGICGNWLLG-S-SVESAALSGMALANHIAD 197 (246)
Q Consensus 125 eL~~llg~~~~~~~~p~~~~v~RW~~A~P~~~~g~~~~~~~~~gL~laGDw~~G-~-~ie~Av~SG~~aA~~l~~ 197 (246)
-.|+.. .. +. ..+... ..+.+..|+||.+||-..+ . ...-|+..|..+|+.|+.
T Consensus 288 ----~~gv~~----~~------~~-G~I~Vd----~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 288 ----NVGVKI----NK------KT-GKIPAD----EEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred ----ccccee----cC------cC-CeEecC----CCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 011100 00 00 001111 1123456899999998753 3 667899999999999874
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=43.02 E-value=29 Score=33.95 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCCCEEEEcCCCCC--CCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLLG--SSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~G--~~ie~Av~SG~~aA~~l~~~l 199 (246)
+..|+||.+||-+.. ..+..|+..|..+|..|...+
T Consensus 271 Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 271 TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHH
Confidence 457899999997643 257889999999999887655
No 209
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=42.97 E-value=43 Score=31.66 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=29.3
Q ss_pred eeeecCceeeEEEEeCCeEE-EEe--CCc--eeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRE--NVK--PRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~--~~g--~~~~aD~VVlA~Pa 87 (246)
++|+++++|++|...++++. +.. .++ ..+.++.||+|+-.
T Consensus 146 v~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 146 VEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred CEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 68999999999987666543 332 222 45689999999864
No 210
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=42.95 E-value=38 Score=32.59 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC
Q 043717 111 PTATAEKVKKGMLEGVEAALG 131 (246)
Q Consensus 111 ~~~~~eel~~~ll~eL~~llg 131 (246)
+..-|+++.+.+.+.|++ -|
T Consensus 209 Lp~~D~ei~~~~~~~l~~-~g 228 (454)
T COG1249 209 LPGEDPEISKELTKQLEK-GG 228 (454)
T ss_pred CCcCCHHHHHHHHHHHHh-CC
Confidence 344577888888888888 44
No 211
>PRK02106 choline dehydrogenase; Validated
Probab=42.76 E-value=40 Score=32.89 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=37.2
Q ss_pred cceeeecCceeeEEEEeCCeE-EEEe--CCc--eeeccCEEEEcCCHHHHHHhhcc
Q 043717 46 SMVSIVRPCWISNLEPFNGMW-HLRE--NVK--PRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w-~l~~--~~g--~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
++++|.+++.|++|..++++. .|.+ .++ ....++.||||+-+-...+||--
T Consensus 214 ~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~ 269 (560)
T PRK02106 214 PNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL 269 (560)
T ss_pred CCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh
Confidence 348999999999998875532 2332 333 23579999999999888888753
No 212
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=42.74 E-value=36 Score=32.12 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=29.3
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+..|+||.+||-..+. ....|+..|..+|..|..
T Consensus 296 ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 296 TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 4579999999998765 678899999999998875
No 213
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=42.31 E-value=25 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=31.5
Q ss_pred cceeeecCceeeEEEEeCCe-----EEE---EeCCceeeccCEEEEcCCHH
Q 043717 46 SMVSIVRPCWISNLEPFNGM-----WHL---RENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~-----w~l---~~~~g~~~~aD~VVlA~Pa~ 88 (246)
..++++++++|.+|....+. +.+ ...++..+.||.||||+-..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 34788899999999887763 233 22445678999999999843
No 214
>PLN02507 glutathione reductase
Probab=41.59 E-value=40 Score=32.56 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=17.9
Q ss_pred CCeEEEEeCCce--eeccCEEEEcCCH
Q 043717 63 NGMWHLRENVKP--RGQFDVVVIAHNG 87 (246)
Q Consensus 63 ~~~w~l~~~~g~--~~~aD~VVlA~Pa 87 (246)
.+.+.|...+|. .+.||.|||||-+
T Consensus 151 ~~~v~V~~~~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 151 PNEVEVTQLDGTKLRYTAKHILIATGS 177 (499)
T ss_pred CCEEEEEeCCCcEEEEEcCEEEEecCC
Confidence 355777765553 4789999999864
No 215
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.57 E-value=14 Score=35.79 Aligned_cols=38 Identities=18% Similarity=-0.009 Sum_probs=31.3
Q ss_pred CCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWLLGS--SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
+..|+||.|||-...+ .+..|+.+|..||..|...+.+
T Consensus 475 Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 475 TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 4578999999988754 5788999999999998887654
No 216
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=41.34 E-value=51 Score=31.97 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=35.9
Q ss_pred eeeecCceeeEEEEeCCeEEEEe--CCc-eeeccCEEEEcCCHHH-HHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE--NVK-PRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~--~~g-~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
++|+++++|.+++..+++|.+.. .++ .++.+|.||.|.-+.. .+++|
T Consensus 141 v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~l 191 (547)
T PRK08132 141 IDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREML 191 (547)
T ss_pred cEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHc
Confidence 68999999999999888887654 334 3678999999987544 44554
No 217
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.99 E-value=41 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=21.2
Q ss_pred eeeEEEE-----eCCeEEEEeCCc--eeeccCEEEEcCCHH
Q 043717 55 WISNLEP-----FNGMWHLRENVK--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 55 ~V~~I~~-----~~~~w~l~~~~g--~~~~aD~VVlA~Pa~ 88 (246)
.|+.|.. ..+.+.+...++ ..+.||+|||||-..
T Consensus 106 ~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~ 146 (466)
T PRK07818 106 KITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSS 146 (466)
T ss_pred CCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCC
Confidence 4555542 234566654333 467899999998643
No 218
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=40.61 E-value=67 Score=30.85 Aligned_cols=36 Identities=14% Similarity=-0.006 Sum_probs=30.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
...++||+||.-.+..+-+.|+.+|..|+..+...+
T Consensus 328 k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 328 KKRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred cCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999987799999999999987666554
No 219
>PRK10015 oxidoreductase; Provisional
Probab=40.49 E-value=40 Score=31.79 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCCEEEEcCCC--------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 166 HGRAGICGNWL--------LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 166 ~~gL~laGDw~--------~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.+|+.++||.- .|.+|.-|+.||+.||+.+.+.+..
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~ 337 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKER 337 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhc
Confidence 46899999963 2458999999999999999887764
No 220
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=40.41 E-value=50 Score=28.93 Aligned_cols=47 Identities=17% Similarity=0.010 Sum_probs=32.8
Q ss_pred eeeecCceeeEEEEeCCeEEEEe---CCc--eeeccCEEEEcCCHHH-HHHhh
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRE---NVK--PRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~---~~g--~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
++|+++++|..+..+++++.+.. .+| .++++|.||-|--... .++.+
T Consensus 126 v~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l 178 (356)
T PF01494_consen 126 VDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQL 178 (356)
T ss_dssp EEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHT
T ss_pred hhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhc
Confidence 78999999999999888865433 223 3678999999877444 34444
No 221
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=40.24 E-value=32 Score=33.24 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCCCEEEEcCC---------CCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNW---------LLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw---------~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+-||||.||.- +.|.++-.|+.+|+.+++.+.+..
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 56899999873 345689999999999999887653
No 222
>PRK10262 thioredoxin reductase; Provisional
Probab=39.83 E-value=17 Score=32.46 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.5
Q ss_pred eeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 49 SIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 49 ~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
+++.+ +|..|...++.|++..+++ .+.||.||||+-..
T Consensus 79 ~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~ 116 (321)
T PRK10262 79 EIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGAS 116 (321)
T ss_pred EEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCC
Confidence 45444 4777887788898876444 56899999998653
No 223
>PRK07121 hypothetical protein; Validated
Probab=39.60 E-value=31 Score=33.02 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCCCEEEEcCC---------CCCCCHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNW---------LLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 165 ~~~gL~laGDw---------~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
+-||||.||+- +.|.++-.|+.+|+.+++.+.+
T Consensus 448 pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 448 PIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 45899999964 3466999999999999998764
No 224
>PRK06126 hypothetical protein; Provisional
Probab=39.44 E-value=48 Score=32.10 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=34.2
Q ss_pred ceeeecCceeeEEEEeCCeEEEEe---CCc--eeeccCEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRE---NVK--PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~---~~g--~~~~aD~VVlA~Pa~~A 90 (246)
.++|+++++|++|...++++.+.. .++ .++.+|.||.|.-+...
T Consensus 141 ~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 478999999999998888877654 233 36789999999886553
No 225
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=38.87 E-value=45 Score=31.31 Aligned_cols=35 Identities=11% Similarity=-0.087 Sum_probs=27.3
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P 86 (246)
++|+++++|.++... . +.+++|..+++|.||+++.
T Consensus 243 V~v~~~~~v~~v~~~--~--v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 243 VDIRTKTAVKEVLDK--E--VVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred CEEEeCCeEEEEeCC--E--EEECCCCEEEccEEEEccC
Confidence 789999999999643 3 4455566789999999865
No 226
>PRK06370 mercuric reductase; Validated
Probab=38.58 E-value=53 Score=31.10 Aligned_cols=35 Identities=9% Similarity=-0.079 Sum_probs=21.6
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
.+++++++.+. ..++...+ + +..+.||+|||||-.
T Consensus 109 gv~v~~g~~~~---~~~~~v~v--~-~~~~~~d~lViATGs 143 (463)
T PRK06370 109 GVDVFRGHARF---ESPNTVRV--G-GETLRAKRIFINTGA 143 (463)
T ss_pred CcEEEEEEEEE---ccCCEEEE--C-cEEEEeCEEEEcCCC
Confidence 47777777542 12223333 3 346789999999865
No 227
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=38.43 E-value=48 Score=31.36 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=13.4
Q ss_pred EEeCCc-eeeccCEEEEcCCH
Q 043717 68 LRENVK-PRGQFDVVVIAHNG 87 (246)
Q Consensus 68 l~~~~g-~~~~aD~VVlA~Pa 87 (246)
|..+++ ....+|+|||||-.
T Consensus 118 v~v~~g~~~~~~~~lIiATGs 138 (463)
T TIGR02053 118 VKVDLGREVRGAKRFLIATGA 138 (463)
T ss_pred EEEcCCeEEEEeCEEEEcCCC
Confidence 433443 35689999999864
No 228
>PRK07538 hypothetical protein; Provisional
Probab=38.07 E-value=51 Score=30.54 Aligned_cols=42 Identities=10% Similarity=-0.116 Sum_probs=30.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCC---c--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENV---K--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~---g--~~~~aD~VVlA~Pa~~ 89 (246)
.+|+++++|++++..++++.+...+ + .++.+|-||-|--...
T Consensus 119 ~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 119 DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 4699999999999877766554322 2 4678999888877444
No 229
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.51 E-value=30 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=17.0
Q ss_pred ccccCCCCceeccCCceeeeC--ChhHHhH
Q 043717 3 TRMIGPQPLIFDHAAQFFTVT--DSRFMSW 30 (246)
Q Consensus 3 trR~~~~~~~~DhGAqyft~~--~~~f~~~ 30 (246)
+.+.++ +.+|+|+.+|... ++.+.++
T Consensus 37 ~~~~~g--~~~d~g~~~~~~~~~~~~~~~l 64 (68)
T PF13450_consen 37 SFRIPG--YRFDLGAHYFFPPDDYPNLFRL 64 (68)
T ss_dssp EEEETT--EEEETSS-SEEETTSCHHHHHH
T ss_pred EEEECC--EEEeeccEEEeCCCCchHHHHH
Confidence 444444 5899999999983 4666553
No 230
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=37.39 E-value=71 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=31.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 043717 165 PHGRAGICGNWLLGSSVESAALSGMALANHIADYLGSGG 203 (246)
Q Consensus 165 ~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l~~~~ 203 (246)
.-+|||+||---+--.|++++.+|..||.+....+.++.
T Consensus 510 ~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 510 NRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred cCCcEEEeecccCCccHHHHHHHhHHHHHHHHHHhhcCc
Confidence 345999999988777999999999999987776665544
No 231
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=37.22 E-value=62 Score=29.75 Aligned_cols=36 Identities=36% Similarity=0.447 Sum_probs=30.4
Q ss_pred CCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 166 HGRAGICGNWL------LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 166 ~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
..++.++||.- .|.+|.-|+.||..+|+.|.+.+..
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 35799999975 4669999999999999999887754
No 232
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=36.98 E-value=67 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=29.6
Q ss_pred eeeecCceeeEEEEeCCeE---EEEeCCc-eeeccC-EEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMW---HLRENVK-PRGQFD-VVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w---~l~~~~g-~~~~aD-~VVlA~Pa~~ 89 (246)
++|+++++|++|...++++ .+...++ ..+.++ .||||+-...
T Consensus 229 v~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 229 IPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred CEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 7999999999998876643 3333334 245675 7999988544
No 233
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=36.95 E-value=64 Score=33.58 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=31.1
Q ss_pred eeeecCceeeEEEEeC--CeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFN--GMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~--~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.+|...+ ....+.+.+|..+++|.||+|+..
T Consensus 202 V~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 202 VRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred CEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 7899999999997643 234456666767899999999874
No 234
>PRK13748 putative mercuric reductase; Provisional
Probab=36.79 E-value=47 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=17.9
Q ss_pred CCeEEEEeCCc--eeeccCEEEEcCCHH
Q 043717 63 NGMWHLRENVK--PRGQFDVVVIAHNGK 88 (246)
Q Consensus 63 ~~~w~l~~~~g--~~~~aD~VVlA~Pa~ 88 (246)
.+.+.|...++ ..+.||+|||||-..
T Consensus 216 ~~~~~v~~~~g~~~~~~~d~lviAtGs~ 243 (561)
T PRK13748 216 DQTLIVRLNDGGERVVAFDRCLIATGAS 243 (561)
T ss_pred CCEEEEEeCCCceEEEEcCEEEEcCCCC
Confidence 34566765443 367999999998653
No 235
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=35.93 E-value=79 Score=31.75 Aligned_cols=33 Identities=18% Similarity=-0.018 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLLGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 165 ~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~ 197 (246)
..+|||+||+-.+..+.+.|+.+|.-|+-.+..
T Consensus 356 ~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~ 388 (617)
T TIGR00136 356 LIQGLFFAGQINGTTGYEEAAAQGLMAGINAAL 388 (617)
T ss_pred CCCCeEEccccCCcchHHHHHHHHHHHHHHHHH
Confidence 468999999988777999999999988854443
No 236
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=35.85 E-value=54 Score=31.06 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=17.7
Q ss_pred CCeEEEEeCCc-eeeccCEEEEcCCHH
Q 043717 63 NGMWHLRENVK-PRGQFDVVVIAHNGK 88 (246)
Q Consensus 63 ~~~w~l~~~~g-~~~~aD~VVlA~Pa~ 88 (246)
++.+.|..+++ ..+.||.|||||-..
T Consensus 117 ~~~v~v~~~~~~~~~~~d~lviATGs~ 143 (458)
T PRK06912 117 DHRVRVEYGDKEEVVDAEQFIIAAGSE 143 (458)
T ss_pred CCEEEEeeCCCcEEEECCEEEEeCCCC
Confidence 34456655444 467899999998754
No 237
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=35.47 E-value=80 Score=29.72 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=29.3
Q ss_pred eeeecCceeeEEEEeCC-eEEEEe-CC-ceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNG-MWHLRE-NV-KPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~-~w~l~~-~~-g~~~~aD~VVlA~Pa 87 (246)
++|+++++|.+|+..++ +..+.. ++ +..+++|.||+++..
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence 78999999999987654 455433 22 346899999999764
No 238
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=34.52 E-value=22 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=36.2
Q ss_pred cceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++|+-|..|.++.+..+...|..+||..++.|.||+|+--
T Consensus 406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 448999999999998887777788888988999999999763
No 239
>PRK14694 putative mercuric reductase; Provisional
Probab=34.33 E-value=60 Score=30.82 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=25.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc--eeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK--PRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g--~~~~aD~VVlA~Pa 87 (246)
+++..+ +|+.+. .+.|.|...++ ..+.||.|||||-.
T Consensus 112 v~~~~g-~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs 150 (468)
T PRK14694 112 ITVLNG-EARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGA 150 (468)
T ss_pred eEEEEE-EEEEec--CCEEEEEecCCCeEEEECCEEEEeCCC
Confidence 555555 366664 45688876544 46899999999864
No 240
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.13 E-value=53 Score=32.38 Aligned_cols=36 Identities=19% Similarity=0.052 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCC----------CCCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWL----------LGSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~----------~G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-. .|.++-+|+-+|+.+++.+...+.
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 479999999853 234789999999999998876543
No 241
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.94 E-value=93 Score=31.04 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred eeeecCceeeEEEEeCCeEE----EEeCCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH----LRENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~----l~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|..+++|++|...++.+. +...++ ..+.++.|||||-...
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 89999999999987665542 122334 3568999999998643
No 242
>PRK07121 hypothetical protein; Validated
Probab=33.93 E-value=84 Score=30.05 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=29.8
Q ss_pred eeeecCceeeEEEEeCC-eE-EEE--eCCc-eeecc-CEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNG-MW-HLR--ENVK-PRGQF-DVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~-~w-~l~--~~~g-~~~~a-D~VVlA~Pa~~A 90 (246)
++|.++++|++|..+++ +. -|. .+++ ..+.+ +.||||+-....
T Consensus 192 v~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 192 VQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred CEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 68999999999987643 32 232 2332 34678 999999986553
No 243
>PLN02546 glutathione reductase
Probab=33.50 E-value=61 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=28.9
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLLGS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~-~ie~Av~SG~~aA~~l~~ 197 (246)
+..|+||.+||-..+. ...-|+..|..+|+.|..
T Consensus 378 Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 378 TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFG 412 (558)
T ss_pred eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 5679999999999765 778899999999988864
No 244
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=33.26 E-value=68 Score=30.82 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=14.9
Q ss_pred eEEEEeCCc--eeeccCEEEEcCCH
Q 043717 65 MWHLRENVK--PRGQFDVVVIAHNG 87 (246)
Q Consensus 65 ~w~l~~~~g--~~~~aD~VVlA~Pa 87 (246)
.+.|...++ ..+.||.|||||-.
T Consensus 129 ~v~v~~~~g~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 129 RIKATNKKGKEKIYSAERFLIATGE 153 (484)
T ss_pred EEEEeccCCCceEEEeCEEEEecCC
Confidence 355543222 36789999999854
No 245
>PRK07512 L-aspartate oxidase; Provisional
Probab=33.12 E-value=56 Score=31.70 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=30.1
Q ss_pred ceeeecCceeeEEEEeCCeEE---EEeCCc-eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH---LRENVK-PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~---l~~~~g-~~~~aD~VVlA~Pa~~ 89 (246)
.++|..++.|+.|...++.+. +...++ ..+.++.||||+-...
T Consensus 151 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 151 SITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred CCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 368899999999876655442 322333 3568999999998754
No 246
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=33.01 E-value=33 Score=32.00 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=23.0
Q ss_pred CCCCCEEEEcCCC-----CCC-CHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWL-----LGS-SVESAALSGMALA 192 (246)
Q Consensus 164 ~~~~gL~laGDw~-----~G~-~ie~Av~SG~~aA 192 (246)
...||||+||.-+ .|+ .+.-||.||..|+
T Consensus 365 k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 365 KLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred cCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 4569999999543 344 9999999999876
No 247
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=32.97 E-value=2.2e+02 Score=28.17 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=29.4
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+.-||||.||+-.. |.++-.|+.+|+.+++.+.+...
T Consensus 369 t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 369 TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 56799999998643 23788999999999998876543
No 248
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=32.93 E-value=61 Score=30.63 Aligned_cols=36 Identities=19% Similarity=0.040 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLLGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
...++||+||+-.+..+.+.|..+|.-|+--+...+
T Consensus 353 k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 353 KKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRL 388 (392)
T ss_dssp SSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999998899999999999986655443
No 249
>PRK12839 hypothetical protein; Provisional
Probab=32.80 E-value=46 Score=32.82 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCCCEEEEcCCC----------CCCCHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWL----------LGSSVESAALSGMALANHIAD 197 (246)
Q Consensus 165 ~~~gL~laGDw~----------~G~~ie~Av~SG~~aA~~l~~ 197 (246)
+-||||.||+-. .|.++-.|+.+|+.|++.+.+
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 568999999732 245899999999999998864
No 250
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=32.65 E-value=48 Score=35.76 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=29.7
Q ss_pred CCCCEEEEcCC---------CCCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 165 PHGRAGICGNW---------LLGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 165 ~~~gL~laGDw---------~~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
+-||||.||+- ..|.++-.|+.+|+.|++.+.+.+.+
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~ 904 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQK 904 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999984 34568999999999999988876543
No 251
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=32.37 E-value=41 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=23.6
Q ss_pred CCCCCEEEEcCCCC-----CC-CHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLL-----GS-SVESAALSGMALAN 193 (246)
Q Consensus 164 ~~~~gL~laGDw~~-----G~-~ie~Av~SG~~aA~ 193 (246)
...||||+||.-++ |+ .+.-||.||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 45799999996553 44 89999999999885
No 252
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=32.24 E-value=54 Score=32.23 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCC---------C-CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWL---------L-GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~---------~-G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+-||||.||+-. . |.++-.|+.+|+.|++.+.+..
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 568999999643 2 4479999999999999987654
No 253
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.23 E-value=52 Score=32.07 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCCCCEEEEcCCCC---------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLL---------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~---------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+.-||||.||+-.. |.++-.|+.+|+.+++.+.+...
T Consensus 359 t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 359 TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 56799999998543 33778999999999999877653
No 254
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=32.21 E-value=50 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCEEEEcCCCC-------------CCCHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLL-------------GSSVESAALSGMALANHIAD 197 (246)
Q Consensus 165 ~~~gL~laGDw~~-------------G~~ie~Av~SG~~aA~~l~~ 197 (246)
+-||||.||+-.. |.++-.|+.+|+.|++.+.+
T Consensus 503 pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 503 PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 4589999987752 55799999999999987653
No 255
>PTZ00058 glutathione reductase; Provisional
Probab=31.75 E-value=94 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=29.5
Q ss_pred eeeecCceeeEEEEeCC-eEEEEe-CCceeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNG-MWHLRE-NVKPRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~-~w~l~~-~~g~~~~aD~VVlA~P 86 (246)
++|++++.|.+|...++ +..+.. +++..+++|.||+++.
T Consensus 293 V~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 293 INIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred CEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 78999999999987643 455544 3345689999999976
No 256
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=31.74 E-value=89 Score=30.80 Aligned_cols=43 Identities=23% Similarity=0.102 Sum_probs=29.4
Q ss_pred eeeecCceeeEEEEeCCeEE-EEe-CCc--eeecc-CEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LRE-NVK--PRGQF-DVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~~-~~g--~~~~a-D~VVlA~Pa~~A 90 (246)
++|+++++|.+|...+++.. |.. .++ ..+.+ +.||||+-....
T Consensus 236 v~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 236 VRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred CEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 79999999999987655432 222 233 24565 789999986655
No 257
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.53 E-value=96 Score=30.40 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=30.7
Q ss_pred ceeeecCceeeEEEEeCCeEE---EEeCCc-eeeccC-EEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH---LRENVK-PRGQFD-VVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~---l~~~~g-~~~~aD-~VVlA~Pa~~A 90 (246)
.++|+++++|++|..++++.. +..+++ ..+.++ .||||+.....
T Consensus 222 gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 222 GVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 379999999999987665542 222333 346675 69999886554
No 258
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.51 E-value=1.7e+02 Score=28.73 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.9
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-.|+.+|+.+++.+.....
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4699999999643 24789999999999998876543
No 259
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=31.25 E-value=58 Score=33.39 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.++++++.+|+.|.+.+.. |.++.|....||.+|+||-...
T Consensus 73 ~i~L~~~~~v~~idr~~k~--V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 73 GITLYTGEKVIQIDRANKV--VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred CcEEEcCCeeEEeccCcce--EEccCCcEeecceeEEecCccc
Confidence 4799999999999987644 4456777889999999987544
No 260
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=30.87 E-value=51 Score=32.50 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=27.4
Q ss_pred CCCCEEEEcC---------CC-CCCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGN---------WL-LGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGD---------w~-~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+-||||.||+ |. .|.++-.|+.+|+.+++.+.+.+
T Consensus 527 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 527 PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 5689999996 21 24489999999999999887643
No 261
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=30.86 E-value=88 Score=29.22 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.7
Q ss_pred eeeecCceeeEEE-EeCCe---EEEEeCC--c-eeeccCEEEEcCCHHHHH
Q 043717 48 VSIVRPCWISNLE-PFNGM---WHLRENV--K-PRGQFDVVVIAHNGKCAN 91 (246)
Q Consensus 48 ~~I~l~t~V~~I~-~~~~~---w~l~~~~--g-~~~~aD~VVlA~Pa~~A~ 91 (246)
.+| ++++|++|. ..+++ |.|...+ + ....||.||||+|-++..
T Consensus 140 A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 140 ANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred CcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 578 999999994 44443 5665422 2 334689999999986543
No 262
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.85 E-value=60 Score=32.13 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCC---------CCCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWL---------LGSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~---------~G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+-+ .|.++-.|+..|+.+++.+.+..
T Consensus 366 t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 366 TNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred eECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4568999999855 33478899999999998877654
No 263
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=30.77 E-value=96 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=29.2
Q ss_pred eeeecCceeeEEEEeCCeE-EEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMW-HLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w-~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++|. ..+|+.|...++.. -|.+.+|..+.+|.||+||-.
T Consensus 111 l~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 111 LTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred eEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 6664 57899998877664 566777778899999999987
No 264
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=30.70 E-value=51 Score=31.13 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+-||||.||.-.. |.++-.|+.+|+.+++.+.+..
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 5689999986433 4589999999999999887654
No 265
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=30.69 E-value=74 Score=29.97 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=27.1
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
++++++++|.+|+. . .+.+.++..+.+|.||++++.
T Consensus 204 I~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 204 IPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred CEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCC
Confidence 68999999999963 2 344444556789999999764
No 266
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=30.62 E-value=61 Score=31.36 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=37.8
Q ss_pred cceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCC-HHHHHHhhcc
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHN-GKCANWLLGS 96 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~P-a~~A~~LL~~ 96 (246)
|++-|..+..|..|...++.+.| +||.++.||.++|||- .|.-.+++..
T Consensus 270 GGvAvl~G~kvvkid~~d~~V~L--nDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 270 GGVAVLRGRKVVKIDEEDKKVIL--NDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred CceEEEeccceEEeecccCeEEe--cCCcEeehhheeeecCcCcccchhhhh
Confidence 45789999999999988877666 6787889999999986 4444445543
No 267
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=30.56 E-value=1.2e+02 Score=28.43 Aligned_cols=48 Identities=6% Similarity=-0.088 Sum_probs=39.1
Q ss_pred eeeecCceeeEEEEe---CCeEEEEeCCceeeccCEEEEcCCHHHHHHhhcc
Q 043717 48 VSIVRPCWISNLEPF---NGMWHLRENVKPRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~---~~~w~l~~~~g~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
+.++-+..|..+... +....|.+.+|....++.+|+|+-++-+ +||+.
T Consensus 168 ~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 168 VIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred eEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcCc
Confidence 688999999988753 4567777777766899999999999988 67874
No 268
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=30.55 E-value=90 Score=29.90 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=31.6
Q ss_pred ceeeecCceeeEEEEeCCeEE-EEe--CCc-eeeccCEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH-LRE--NVK-PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~-l~~--~~g-~~~~aD~VVlA~Pa~~A 90 (246)
.++|++++.|+.|...++++. +.. .++ ..+.++.||+|+-....
T Consensus 143 gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 143 NIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 378999999999987665543 322 222 45789999999987653
No 269
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.54 E-value=60 Score=32.10 Aligned_cols=44 Identities=16% Similarity=0.002 Sum_probs=30.1
Q ss_pred ceeeecCceeeEEEEeC-CeE---EEEeCCc-eeeccC-EEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFN-GMW---HLRENVK-PRGQFD-VVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~-~~w---~l~~~~g-~~~~aD-~VVlA~Pa~~A 90 (246)
.++|+++++|++|..++ +++ .+..+++ ..+.++ .||||+-....
T Consensus 227 gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 227 GVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred CceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 47999999999999863 433 2222333 345676 69999987664
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=30.51 E-value=76 Score=30.18 Aligned_cols=40 Identities=15% Similarity=-0.033 Sum_probs=24.9
Q ss_pred ceeeecCceeeEEE--EeCCeEEEEeCCce--eeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLE--PFNGMWHLRENVKP--RGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~--~~~~~w~l~~~~g~--~~~aD~VVlA~Pa 87 (246)
.++++.++ ++.+. ...+.+.+.+.+|. .+.||.|||||-.
T Consensus 106 gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs 149 (466)
T PRK07845 106 GVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA 149 (466)
T ss_pred CCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC
Confidence 36666654 33333 33456677664443 6789999999864
No 271
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=30.41 E-value=3.1e+02 Score=24.82 Aligned_cols=38 Identities=29% Similarity=0.184 Sum_probs=30.5
Q ss_pred CCCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 165 PHGRAGICGNWL------LGSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 165 ~~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
...++.+.||.- .|.++.-|+++|..+|+.|.+.+..+
T Consensus 260 ~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~ 303 (388)
T TIGR01790 260 LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS 303 (388)
T ss_pred cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC
Confidence 346899999964 36699999999999999997766433
No 272
>PRK07846 mycothione reductase; Reviewed
Probab=29.95 E-value=82 Score=29.90 Aligned_cols=20 Identities=35% Similarity=0.243 Sum_probs=14.5
Q ss_pred EEeCCceeeccCEEEEcCCH
Q 043717 68 LRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 68 l~~~~g~~~~aD~VVlA~Pa 87 (246)
|..+++..+.||+|||||-.
T Consensus 119 V~v~~g~~~~~d~lViATGs 138 (451)
T PRK07846 119 LRTGDGEEITADQVVIAAGS 138 (451)
T ss_pred EEECCCCEEEeCEEEEcCCC
Confidence 44444556799999999864
No 273
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=29.65 E-value=2.3e+02 Score=28.37 Aligned_cols=47 Identities=9% Similarity=-0.154 Sum_probs=31.2
Q ss_pred eeeecCceeeEEEEeC---CeEEEEeC------Cc--eeeccCEEEEcCCHHH-HHHhh
Q 043717 48 VSIVRPCWISNLEPFN---GMWHLREN------VK--PRGQFDVVVIAHNGKC-ANWLL 94 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~---~~w~l~~~------~g--~~~~aD~VVlA~Pa~~-A~~LL 94 (246)
++++++++|++++..+ ..+.++.. +| .++.+|.||-|--+.. .++.+
T Consensus 158 v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 158 LEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred eEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 5778999999998764 23665542 23 4678999888877544 34444
No 274
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.63 E-value=49 Score=30.01 Aligned_cols=39 Identities=21% Similarity=0.065 Sum_probs=32.1
Q ss_pred cCCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHHHhcC
Q 043717 163 FDPHGRAGICGNWLLGS--SVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 163 ~~~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
.+.-||||.|||-+... -+..|+.+|-.+|..+.+.+.+
T Consensus 262 ~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 262 ETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred ccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhh
Confidence 36779999999999887 4888999999998887776644
No 275
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=29.29 E-value=62 Score=30.75 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCCCEEEEcCCC--CC-----CCHHHHHHHHHHHHHHHHHHhcC
Q 043717 164 DPHGRAGICGNWL--LG-----SSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 164 ~~~~gL~laGDw~--~G-----~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
..++.||.+||-. .. ++.+.|++.|..+|+.|.+.+.-
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 4467899999953 32 58999999999999999988754
No 276
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.05 E-value=67 Score=31.78 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.3
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-+|+-+|+.+++.+.+.+.
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 424 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999998532 23789999999999998876543
No 277
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=28.52 E-value=73 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=28.9
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-+|+-+|+.|++.+.+...
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999753 23788999999999998876543
No 278
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.48 E-value=29 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.6
Q ss_pred ccCEEEEcCCHHHHHHhhcc
Q 043717 77 QFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 77 ~aD~VVlA~Pa~~A~~LL~~ 96 (246)
.+|.|||++|+++...++..
T Consensus 61 ~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHH
Confidence 59999999999999887764
No 279
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=28.36 E-value=63 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=28.8
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+... |.++-.|+.+|+.+++.+.+..
T Consensus 344 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 344 TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 46799999999632 3478999999999999887653
No 280
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=27.74 E-value=27 Score=27.17 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.5
Q ss_pred CcccccccccCCCCCCCC
Q 043717 215 NEFQLLEGHDIGQFPGLE 232 (246)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (246)
-+|.|+.|+|||-|.=-.
T Consensus 7 ~kfrl~dg~digp~~~~~ 24 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPA 24 (113)
T ss_pred EEEEccCCCccCccccCh
Confidence 479999999999886433
No 281
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=27.70 E-value=1.2e+02 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=30.9
Q ss_pred eeeecCceeeEEEEeCCeEE-E---EeCCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-L---RENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l---~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|.+++.|+.|...++++. + ...++ ..+.++.||||+-...
T Consensus 144 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 144 VSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred CEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 68999999999987766653 2 22334 3568999999998754
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=27.31 E-value=1e+02 Score=30.18 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=29.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGK 88 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~ 88 (246)
+++ ++++|+.+...++.+.+.+.++ .+.+|.|||||-+.
T Consensus 75 v~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 75 VKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred CEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 455 3778999988777788877555 56899999999753
No 283
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=27.21 E-value=1.3e+02 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=31.0
Q ss_pred ceeeecCceeeEEEEeCCeEE----EEeCCc--eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH----LRENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~----l~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
.++|..++.|++|...++++. +...++ ..+.++.||||+-...
T Consensus 148 ~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 148 QIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred CcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 367889999999987766543 233344 4578999999997644
No 284
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=27.11 E-value=94 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.028 Sum_probs=22.3
Q ss_pred ceeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
.+++..++.+.. +...|...++..+.||+|||||-.
T Consensus 106 gv~~~~g~~~~~-----~~~~V~~~~g~~~~~d~lIiATGs 141 (452)
T TIGR03452 106 NIDVYDGHARFV-----GPRTLRTGDGEEITGDQIVIAAGS 141 (452)
T ss_pred CeEEEEEEEEEe-----cCCEEEECCCcEEEeCEEEEEECC
Confidence 356666554332 334455545556799999999854
No 285
>PRK06175 L-aspartate oxidase; Provisional
Probab=27.02 E-value=75 Score=30.02 Aligned_cols=36 Identities=11% Similarity=-0.034 Sum_probs=28.6
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
++-||||.||.-.. |.++-.|+-.|+.|++.+....
T Consensus 342 t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 342 TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 56799999998632 3478999999999999887544
No 286
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=26.96 E-value=1.3e+02 Score=27.74 Aligned_cols=38 Identities=26% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHHHhcCC
Q 043717 165 PHGRAGICGNWLL------GSSVESAALSGMALANHIADYLGSG 202 (246)
Q Consensus 165 ~~~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~~l~~~ 202 (246)
..+++.++||..+ |.+|.-|+.||..||+.|.+.+..+
T Consensus 267 ~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~ 310 (396)
T COG0644 267 VGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG 310 (396)
T ss_pred ccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3478999999887 7899999999999999999876543
No 287
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=26.80 E-value=1.3e+02 Score=29.28 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=30.5
Q ss_pred ceeeecCceeeEEEEeCCeE---EEE--eC-------------Cc-eeeccCEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMW---HLR--EN-------------VK-PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w---~l~--~~-------------~g-~~~~aD~VVlA~Pa~~A 90 (246)
.++|++++++++|...++++ .+. .. ++ ..+.++.|||||-....
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 47999999999998766543 221 11 12 24678999999986654
No 288
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.79 E-value=1.1e+02 Score=30.30 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=27.4
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+-||||.||+-.+ |.++-.|+.+|+.|++.+.+..
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 5589999995432 3468999999999999887654
No 289
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=26.49 E-value=1.3e+02 Score=29.15 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=30.1
Q ss_pred ceeeecCceeeEEEEeCCeEE---EEeCCc-eeeccC-EEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH---LRENVK-PRGQFD-VVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~---l~~~~g-~~~~aD-~VVlA~Pa~~ 89 (246)
.++|.++++|++|...++.+. +..+++ ..+.++ .||||+-...
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 378999999999987665442 222333 346786 7999998754
No 290
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=1.1e+02 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.8
Q ss_pred ceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 54 CWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 54 t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
..|.++...++.+.|.++++. ..++.||||+-+..
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcc
Confidence 667777766557888887774 89999999987543
No 291
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=26.08 E-value=81 Score=29.52 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADY 198 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~ 198 (246)
+-||||.||+-+. |.++-.|+.+|+.+++.+.+.
T Consensus 386 ~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 386 APDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4589999996432 458999999999999987654
No 292
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.99 E-value=65 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIAD 197 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~ 197 (246)
+-||||.||+-.. |.++-.|+.+|+.|++.+.+
T Consensus 513 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 513 VIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 5689999986642 44789999999999998764
No 293
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=25.91 E-value=1.1e+02 Score=28.81 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=22.2
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCc-eeeccCEEEEcCC
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVK-PRGQFDVVVIAHN 86 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g-~~~~aD~VVlA~P 86 (246)
+++..+ +++.+. .+.+.|.+.++ ..+.||.|||||-
T Consensus 92 v~~~~g-~~~~i~--~~~~~v~~~~g~~~~~~d~lviATG 128 (441)
T PRK08010 92 IDVIDG-QAEFIN--NHSLRVHRPEGNLEIHGEKIFINTG 128 (441)
T ss_pred cEEEEE-EEEEec--CCEEEEEeCCCeEEEEeCEEEEcCC
Confidence 455444 244442 34566766555 3578999999983
No 294
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.86 E-value=1.1e+02 Score=29.81 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=29.8
Q ss_pred eeeecCceeeEEEEeCCe-EE-E--Ee-CCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGM-WH-L--RE-NVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~-w~-l--~~-~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|.+++.|+.|..++++ +. + .. .++ ..+.++.||+||-...
T Consensus 149 v~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 149 IKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 689999999999876554 32 2 12 333 3568999999998654
No 295
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.62 E-value=1.1e+02 Score=30.67 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCCCCEEEEcCCCC---------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL---------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~---------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+-.. |.++-.|+..|+.+++.+....
T Consensus 403 t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 403 ATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 45799999998543 3488999999999999887654
No 296
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.36 E-value=72 Score=30.70 Aligned_cols=35 Identities=23% Similarity=0.078 Sum_probs=26.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLL-GSSVESAALSGMALANHIADY 198 (246)
Q Consensus 164 ~~~~gL~laGDw~~-G~~ie~Av~SG~~aA~~l~~~ 198 (246)
+..+|||+||+++. |+++.++.-|+...+..+...
T Consensus 447 t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 447 TPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred CCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence 45589999999986 558999888887776655543
No 297
>PLN02546 glutathione reductase
Probab=25.36 E-value=1.4e+02 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=30.2
Q ss_pred eeeecCceeeEEEEeC-CeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFN-GMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~-~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
++|+++++|.+|...+ +...+..+++....+|.||+++....
T Consensus 308 V~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 308 IEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred cEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence 7899999999998653 44555555554445899999987443
No 298
>PRK07804 L-aspartate oxidase; Provisional
Probab=25.33 E-value=1.2e+02 Score=29.60 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=27.9
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+-.. |.++-.|+..|+.+++.+.+..
T Consensus 368 t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 368 TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred ccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999753 2267888999999998887654
No 299
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=25.24 E-value=99 Score=27.80 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=29.8
Q ss_pred CCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhcC
Q 043717 166 HGRAGICGNWL------LGSSVESAALSGMALANHIADYLGS 201 (246)
Q Consensus 166 ~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~~ 201 (246)
..++.+.||.. .|.++.-|++++..+|+.|...+..
T Consensus 275 ~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~ 316 (385)
T TIGR01988 275 APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRR 316 (385)
T ss_pred cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhc
Confidence 46899999985 4669999999999999998876543
No 300
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.08 E-value=78 Score=31.12 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred eeeecCceeeEEEEeCCeEE----EEeCCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH----LRENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~----l~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|..++.|++|...++.+. +...++ ..+.++.||||+-...
T Consensus 153 v~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 153 IHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred CEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 68899999999987666542 222344 2568999999998764
No 301
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=24.94 E-value=99 Score=30.01 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=31.4
Q ss_pred eeeecCceeeEEEEeCCeEEEEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWHLRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa 87 (246)
+++++++.|+.+....+. |.+.+|..+.|+.+||||-.
T Consensus 142 Ie~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 142 IELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence 689999999999887655 44566778899999999876
No 302
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=24.85 E-value=1.8e+02 Score=29.11 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=30.3
Q ss_pred eeeecCceeeEEEEeC--CeE-EEEe----CCce-eeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFN--GMW-HLRE----NVKP-RGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~--~~w-~l~~----~~g~-~~~aD~VVlA~Pa~~ 89 (246)
++|+.+++|++|...+ +++ .|.. +++. .+.+|.||+|+-++.
T Consensus 247 a~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 247 AAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 6899999999998763 433 3332 2332 578999999999874
No 303
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=24.78 E-value=1.5e+02 Score=29.40 Aligned_cols=36 Identities=14% Similarity=-0.044 Sum_probs=28.1
Q ss_pred CCCCCEEEEcCCCC---------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL---------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~---------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+-.. |.++-+|+..|+.+++.+....
T Consensus 381 t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 381 TNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred ccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999532 2478899999999998877643
No 304
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.75 E-value=1.5e+02 Score=29.12 Aligned_cols=44 Identities=14% Similarity=-0.019 Sum_probs=30.3
Q ss_pred ceeeecCceeeEEEEeCCeE---EEEeCCc-eeecc-CEEEEcCCHHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMW---HLRENVK-PRGQF-DVVVIAHNGKCA 90 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w---~l~~~~g-~~~~a-D~VVlA~Pa~~A 90 (246)
.++|+++++|++|...++++ .+..+++ ..+.+ +.||||+-....
T Consensus 222 gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 222 GVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 37999999999998776543 2222333 34567 479999986554
No 305
>PRK09126 hypothetical protein; Provisional
Probab=24.74 E-value=88 Score=28.47 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=29.2
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 166 HGRAGICGNWLL------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 166 ~~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
..++.++||... |-+++-|+.+|..+|+.|...+.
T Consensus 279 ~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~ 319 (392)
T PRK09126 279 AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAAR 319 (392)
T ss_pred hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHh
Confidence 468999999854 55999999999999998877654
No 306
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=24.73 E-value=1.5e+02 Score=29.50 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=30.5
Q ss_pred eeeecCceeeEEEEeCCeEE-E---EeCCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-L---RENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l---~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|+.++.|..|...++++. + ...++ ..+.++.||+|+-...
T Consensus 148 V~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 148 DNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 78999999999987665432 2 22333 3578999999999755
No 307
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=24.41 E-value=1.4e+02 Score=29.26 Aligned_cols=51 Identities=10% Similarity=-0.121 Sum_probs=38.0
Q ss_pred cceeeecCceeeEEEEeCCeEEE---EeCCc----eeeccCEEEEcCCHHHHHHhhcc
Q 043717 46 SMVSIVRPCWISNLEPFNGMWHL---RENVK----PRGQFDVVVIAHNGKCANWLLGS 96 (246)
Q Consensus 46 ~m~~I~l~t~V~~I~~~~~~w~l---~~~~g----~~~~aD~VVlA~Pa~~A~~LL~~ 96 (246)
.+++|.+++.|+.|...++++.. ...++ ....++.|||++-+-+..+||--
T Consensus 216 ~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 216 PNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred CceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence 34899999999999999887643 22332 22468899999998888887753
No 308
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.40 E-value=98 Score=30.69 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=29.0
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-.|+-.|+.+++.+.+.+.
T Consensus 384 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 384 VVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred ccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 4689999998643 23788999999999998877643
No 309
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=24.35 E-value=85 Score=31.61 Aligned_cols=43 Identities=14% Similarity=-0.133 Sum_probs=31.3
Q ss_pred eeeecCceeeEEEEeCCe---EEEEe-CCc--eeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGM---WHLRE-NVK--PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~---w~l~~-~~g--~~~~aD~VVlA~Pa~~A 90 (246)
++|..++.|+.|...+++ +.+.. .+| ..+.++.|||||-....
T Consensus 173 v~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 173 VPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred CEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 789999999999876654 33433 344 34579999999987653
No 310
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=23.65 E-value=1.3e+02 Score=27.68 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 167 GRAGICGNWLL------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 167 ~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.++.|.||..+ |-+++-|++++..+|+.|...+
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~ 317 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFY 317 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHh
Confidence 58999999864 4499999999999999887654
No 311
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.16 E-value=1.3e+02 Score=29.59 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=30.2
Q ss_pred eeeecCceeeEEEEeCCeEE----EEeCCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH----LRENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~----l~~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|.+++.|..|...++++. +...++ ..+.++.||||+-...
T Consensus 150 i~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 150 VTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred CEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 68999999999987665432 222334 3578999999998754
No 312
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=83 Score=29.69 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLLGS--SVESAALSGMALANHIAD 197 (246)
Q Consensus 164 ~~~~gL~laGDw~~G~--~ie~Av~SG~~aA~~l~~ 197 (246)
+.-|.+|..||.+.+- --+=||.||+.+|++|..
T Consensus 329 t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 329 TNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred cCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 4568999999999776 788999999999999975
No 313
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.46 E-value=1.9e+02 Score=29.08 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=30.9
Q ss_pred eeeecCceeeEEEEeCCeE---EEEe-CCc--eeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMW---HLRE-NVK--PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w---~l~~-~~g--~~~~aD~VVlA~Pa~~A 90 (246)
++|++++.|+.|...++++ .+.. .++ ..+.++.|||||-....
T Consensus 185 V~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 185 VKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred CEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 6899999999998765543 2222 234 35689999999987554
No 314
>PRK08071 L-aspartate oxidase; Provisional
Probab=22.34 E-value=1.2e+02 Score=29.24 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=29.7
Q ss_pred ceeeecCceeeEEEEeCCeEE-EE--eCCc--eeeccCEEEEcCCHHH
Q 043717 47 MVSIVRPCWISNLEPFNGMWH-LR--ENVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~~w~-l~--~~~g--~~~~aD~VVlA~Pa~~ 89 (246)
.++|..++.|..|...++.+. +. ..++ ..+.++.|||||-...
T Consensus 143 gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 143 HVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred CCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 378999999999976666543 22 2233 2567999999996543
No 315
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=22.34 E-value=1.1e+02 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=28.3
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.-||||.||+-.. |.++-.|+-.|+.|++.+.+..
T Consensus 401 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 401 IVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred ccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999643 2389999999999999887654
No 316
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.19 E-value=1.2e+02 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.-||||.||+-.. |.++-+|+-.|+.+++.+.+..
T Consensus 374 ~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 374 VVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 5799999999643 2378999999999999887654
No 317
>PRK08401 L-aspartate oxidase; Provisional
Probab=22.12 E-value=1.5e+02 Score=28.17 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=27.6
Q ss_pred CCCCCEEEEcCCCC-C---------CCHHHHHHHHHHHHHHHHHH
Q 043717 164 DPHGRAGICGNWLL-G---------SSVESAALSGMALANHIADY 198 (246)
Q Consensus 164 ~~~~gL~laGDw~~-G---------~~ie~Av~SG~~aA~~l~~~ 198 (246)
+.-||||.||+-.. | .++-.|+..|+.+++.+.+.
T Consensus 321 t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 321 TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 56799999998642 2 37788999999999988653
No 318
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=22.10 E-value=1e+02 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=29.3
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
+.-||||.||+-.. |.++-.|+.+|+.+++.+.+.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 55799999998643 24789999999999998876543
No 319
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=21.99 E-value=3.3e+02 Score=27.05 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=28.3
Q ss_pred ceeeecCceeeEEEEeCC-eE---EEEe-CCc--eeeccCEEEEcCCH
Q 043717 47 MVSIVRPCWISNLEPFNG-MW---HLRE-NVK--PRGQFDVVVIAHNG 87 (246)
Q Consensus 47 m~~I~l~t~V~~I~~~~~-~w---~l~~-~~g--~~~~aD~VVlA~Pa 87 (246)
.++|+++++|+.|...++ ++ .+.. .++ ..+.++.|||||-.
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 478999999999987543 32 2222 233 35679999999954
No 320
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.95 E-value=1.7e+02 Score=28.80 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 166 HGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 166 ~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
-||||.||+-.. |.++-.|+.+|+.+++.+.+..
T Consensus 371 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 371 VRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred eCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 589999999643 2378999999999999887654
No 321
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=21.72 E-value=1.8e+02 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-+|+..|+.+++.+.+...
T Consensus 385 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 385 GLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred ccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3699999998632 23789999999999998876653
No 322
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.72 E-value=1.3e+02 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=28.8
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHhc
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
.-||||.||+-.. |.++-.|+..|+.+++.+.+...
T Consensus 422 ~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 422 VVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred ccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 4799999999642 23789999999999998876543
No 323
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=21.63 E-value=1e+02 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIA 196 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~ 196 (246)
+-||||.||+-.. |.++-.|+.+|+.|++.+.
T Consensus 521 pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 521 VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 5689999985432 4489999999999998775
No 324
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=21.43 E-value=2.2e+02 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=25.2
Q ss_pred eeeEEEEeCCeEEEEeCCceeeccCEEEEcCCHHH
Q 043717 55 WISNLEPFNGMWHLRENVKPRGQFDVVVIAHNGKC 89 (246)
Q Consensus 55 ~V~~I~~~~~~w~l~~~~g~~~~aD~VVlA~Pa~~ 89 (246)
.|++|.++++.+.+. ++..+.||.+|||+-+.+
T Consensus 79 ~V~~ID~~~k~V~~~--~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 79 EVTDIDRDAKKVTLA--DLGEISYDYLVVALGSET 111 (405)
T ss_pred EEEEEcccCCEEEeC--CCccccccEEEEecCCcC
Confidence 589999988877663 344789999999876544
No 325
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=21.40 E-value=1.9e+02 Score=28.44 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=30.6
Q ss_pred eeeecCceeeEEEEeCCeEE---E-EeCCc--eeeccCEEEEcCCHHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH---L-RENVK--PRGQFDVVVIAHNGKCA 90 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~---l-~~~~g--~~~~aD~VVlA~Pa~~A 90 (246)
++|..++.|++|...++++. + ...++ ..+.+++|||||-....
T Consensus 134 i~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 134 TSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred CEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 78999999999987655432 2 12334 35679999999987653
No 326
>PTZ00058 glutathione reductase; Provisional
Probab=21.40 E-value=1.4e+02 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=28.7
Q ss_pred cCCCCCEEEEcCCCC----------------------------------CC-CHHHHHHHHHHHHHHHHH
Q 043717 163 FDPHGRAGICGNWLL----------------------------------GS-SVESAALSGMALANHIAD 197 (246)
Q Consensus 163 ~~~~~gL~laGDw~~----------------------------------G~-~ie~Av~SG~~aA~~l~~ 197 (246)
.+..|+||.+||-.. +. -..-|.+.|+.+|+.|..
T Consensus 362 qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 362 RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred ccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 356799999999987 22 567899999999999874
No 327
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=21.20 E-value=1.1e+02 Score=30.07 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=27.1
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
.-||||.||+-.. |.++..|+.+|+.|++.+.+..
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 5689999984432 3368899999999999887654
No 328
>PRK08071 L-aspartate oxidase; Provisional
Probab=21.19 E-value=94 Score=30.09 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=28.1
Q ss_pred CCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL----------GSSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.||+-.. |.++-.|+..|+.+++.+....
T Consensus 343 t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 343 TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 46799999998642 2378899999999999886543
No 329
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.18 E-value=1.2e+02 Score=29.76 Aligned_cols=42 Identities=17% Similarity=0.027 Sum_probs=30.7
Q ss_pred eeeecCceeeEEEEeCCeEE-EE--e-CCc--eeeccCEEEEcCCHHH
Q 043717 48 VSIVRPCWISNLEPFNGMWH-LR--E-NVK--PRGQFDVVVIAHNGKC 89 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~-l~--~-~~g--~~~~aD~VVlA~Pa~~ 89 (246)
++|.+++.+++|...++.+. +. . .++ ..+.++.|||||-...
T Consensus 151 v~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 151 VDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred CEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 68999999999998766543 22 2 233 3567999999998765
No 330
>PRK08275 putative oxidoreductase; Provisional
Probab=21.03 E-value=1.3e+02 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=28.8
Q ss_pred CCCCCEEEEcCCCC-C-CCHHHHHHHHHHHHHHHHHHh
Q 043717 164 DPHGRAGICGNWLL-G-SSVESAALSGMALANHIADYL 199 (246)
Q Consensus 164 ~~~~gL~laGDw~~-G-~~ie~Av~SG~~aA~~l~~~l 199 (246)
+.-||||.|||-.. + .++-.|+..|..+++.+...+
T Consensus 367 t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 367 TTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred cCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999643 2 378889999999998877654
No 331
>PRK06126 hypothetical protein; Provisional
Probab=21.02 E-value=3e+02 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHHHHHHHHH
Q 043717 166 HGRAGICGNWLL------GSSVESAALSGMALANHIAD 197 (246)
Q Consensus 166 ~~gL~laGDw~~------G~~ie~Av~SG~~aA~~l~~ 197 (246)
..+++|+||... |-+++-+|..+..+|..|..
T Consensus 302 ~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~ 339 (545)
T PRK06126 302 RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAA 339 (545)
T ss_pred cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHH
Confidence 368999999864 44888888888888877654
No 332
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=20.99 E-value=1.5e+02 Score=29.89 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred eeeecCceeeEEEEeCCe--EEEEeCCce---------------eeccCEEEEcC
Q 043717 48 VSIVRPCWISNLEPFNGM--WHLRENVKP---------------RGQFDVVVIAH 85 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~--w~l~~~~g~---------------~~~aD~VVlA~ 85 (246)
++|+++++|.+|+..+++ +.+...+.. .+++|.||+|+
T Consensus 369 V~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAt 423 (659)
T PTZ00153 369 VRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVAT 423 (659)
T ss_pred cEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEE
No 333
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=20.94 E-value=1.6e+02 Score=27.86 Aligned_cols=40 Identities=13% Similarity=-0.067 Sum_probs=28.0
Q ss_pred eeeecCceeeEEEEeCCe---EEEEe----------------C-CceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGM---WHLRE----------------N-VKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~---w~l~~----------------~-~g~~~~aD~VVlA~Pa 87 (246)
++|++++.|.+|...+++ ..+.. + ++..+++|.||+|+.-
T Consensus 326 V~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 326 VEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 789999999999866543 33321 1 2246789999999763
No 334
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=20.64 E-value=94 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHHHH
Q 043717 165 PHGRAGICGNWLL----------GSSVESAALSGMALANHIA 196 (246)
Q Consensus 165 ~~~gL~laGDw~~----------G~~ie~Av~SG~~aA~~l~ 196 (246)
+-||||.||+-.. |.++-.|+.+|+.|++.+.
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 4589999997532 3469999999999998774
No 335
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.59 E-value=1.5e+02 Score=26.82 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCCEEEEcCCC------CCCCHHHHHHHHHHHHHHHHHHhc
Q 043717 166 HGRAGICGNWL------LGSSVESAALSGMALANHIADYLG 200 (246)
Q Consensus 166 ~~gL~laGDw~------~G~~ie~Av~SG~~aA~~l~~~l~ 200 (246)
..++.+.||.. .|-+++-|+++|..+|+.|...+.
T Consensus 281 ~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~ 321 (395)
T PRK05732 281 SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALA 321 (395)
T ss_pred cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHh
Confidence 36899999985 456999999999999998876543
No 336
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=20.49 E-value=1.1e+02 Score=29.67 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=15.1
Q ss_pred chhcccCCccccccc-ccCCCC
Q 043717 208 EFAVGLHNEFQLLEG-HDIGQF 228 (246)
Q Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~ 228 (246)
+-+-++|+.++-++| .++|++
T Consensus 197 ~~~~~IN~D~~~~~~dGd~~ry 218 (553)
T COG4187 197 EYTAAINLDVTSDQGDGDQGRY 218 (553)
T ss_pred eEEEEeccccccCCCCCccceE
Confidence 345678888888888 667764
No 337
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=20.26 E-value=1.9e+02 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.006 Sum_probs=28.5
Q ss_pred eeeecCceeeEEEEeCCeEE---EEeC-----------CceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWH---LREN-----------VKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~---l~~~-----------~g~~~~aD~VVlA~Pa 87 (246)
++|..++.|..|...+++++ +..+ +...+.++.||.|+..
T Consensus 115 V~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 115 AKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred CEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 78999999999988766322 1111 1246789999999983
No 338
>PF06267 DUF1028: Family of unknown function (DUF1028); InterPro: IPR010430 This is a family of bacterial and archaeal proteins with unknown function.; PDB: 2IMH_A.
Probab=20.22 E-value=1.7e+02 Score=24.88 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=27.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHH------HHHHHHHh----cCCCCCccchhccc
Q 043717 166 HGRAGICGNWLLGSSVESAALSGMAL------ANHIADYL----GSGGVRPEEFAVGL 213 (246)
Q Consensus 166 ~~gL~laGDw~~G~~ie~Av~SG~~a------A~~l~~~l----~~~~~~~~~~~~~~ 213 (246)
.++..++||.+.+..+-.|+..++.. +++|+..| ..+|++.+...-+|
T Consensus 108 g~~~~v~GN~La~~~V~~Am~~af~~~~~~~L~eRLl~AL~Ag~~aGGD~rg~~SAal 165 (190)
T PF06267_consen 108 GDNYAVAGNMLAGEEVLEAMADAFEAATGLPLAERLLAALEAGQAAGGDKRGRQSAAL 165 (190)
T ss_dssp ETTEEEEEES-S-TCHHHHHHHHHHH--S--HHHHHHHHHHHHHHT--------EEEE
T ss_pred CCCEEEECccCCChhHHHHHHHHHHhccCccHHHHHHHHHHHHHHhCCCcCccceEEE
Confidence 46899999999999888888877764 56666554 34666655544443
No 339
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=20.16 E-value=85 Score=27.87 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=21.2
Q ss_pred eeecCccCCCCCCC---------CCCccCCCCCEEEEcCC
Q 043717 145 VHLWGAALPTNTPS---------IPCIFDPHGRAGICGNW 175 (246)
Q Consensus 145 v~RW~~A~P~~~~g---------~~~~~~~~~gL~laGDw 175 (246)
.-+|+|-.|.++-- .++..+..|.||+||+-
T Consensus 173 ~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq 212 (257)
T cd07387 173 TLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQ 212 (257)
T ss_pred HHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCC
Confidence 35677777765521 23455788999999975
No 340
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=20.11 E-value=1.4e+02 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=30.5
Q ss_pred eeeecCceeeEEEEeCCeEE---EEeCCceeeccCEEEEcCCH
Q 043717 48 VSIVRPCWISNLEPFNGMWH---LRENVKPRGQFDVVVIAHNG 87 (246)
Q Consensus 48 ~~I~l~t~V~~I~~~~~~w~---l~~~~g~~~~aD~VVlA~Pa 87 (246)
+++++++.|.+|....+... +....+....+|.|+++++.
T Consensus 193 i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 193 VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 67899999999998766543 34445556789999999863
Done!