BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043718
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUW2|HYOU1_DANRE Hypoxia up-regulated protein 1 OS=Danio rerio GN=hyou1 PE=2 SV=1
Length = 980
Score = 40.0 bits (92), Expect = 0.013, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 78 DDQKKKKEEPADKKEPEKKKETPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEPK 137
D+++ E ++ +PEK++ET Q + + E+ +E++P+ +E +K K ++Q E + E
Sbjct: 591 DEEEVTPEAGKEQDQPEKQEETVQEKPETEEGKEAEPQAEEQKEDKEKAENQGETESEKT 650
Query: 138 DTP 140
+ P
Sbjct: 651 EKP 653
>sp|Q922Q8|LRC59_MOUSE Leucine-rich repeat-containing protein 59 OS=Mus musculus GN=Lrrc59
PE=2 SV=1
Length = 307
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 45 VTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEK 104
V KV C ++ + K C + V++ ++ D +++++ ++E EKK+E Q K
Sbjct: 123 VLAKVAGDCLDEKQCKQC--ANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQQAK 180
Query: 105 --------KKEKAEESKPKNKEPAPEKGKEKDQPEK-KKEPKDTPKPKVDPQPKVDPP 153
K+EKAEE + + KE +K +++Q +K KKE PK K +P+ PP
Sbjct: 181 EAKERELRKREKAEEKERRRKEYDAQKASKREQEKKPKKEANQAPKSKSGSRPRKPPP 238
>sp|Q5RJR8|LRC59_RAT Leucine-rich repeat-containing protein 59 OS=Rattus norvegicus
GN=Lrrc59 PE=1 SV=1
Length = 307
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 45 VTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEK 104
V KV C ++ + K C + V++ ++ D +++++ ++E EKK+E Q K
Sbjct: 123 VLAKVAGDCLDEKQCKQC--ANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQQAK 180
Query: 105 --------KKEKAEESKPKNKEPAPEKGKEKDQPEK-KKEPKDTPKPKVDPQPKVDPP 153
K+EKAEE + + KE +K +++Q +K KKE PK K +P+ PP
Sbjct: 181 EAKERELRKREKAEEKERRRKEYDAQKASKREQEKKPKKETNQAPKSKSGSRPRKPPP 238
>sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2 OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=infB PE=3
SV=1
Length = 973
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 46 TIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEKK 105
T ++ PE+ R KI KG + + K ++ K KEEP K+EP+ K+E E
Sbjct: 78 TAEIKTVIPEEFRPKIVMKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEEPKVKEAP 137
Query: 106 KEKAEESKPKNKEPA 120
A ++ K +PA
Sbjct: 138 AAPAAQAPVKPAQPA 152
>sp|Q96AG4|LRC59_HUMAN Leucine-rich repeat-containing protein 59 OS=Homo sapiens GN=LRRC59
PE=1 SV=1
Length = 307
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 45 VTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEK 104
V KV C ++ + K C + V++ ++ D +++++ ++E EKK+E Q K
Sbjct: 123 VLAKVAGDCLDEKQCKQC--ANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQRAK 180
Query: 105 --------KKEKAEESKPKNKEPAPEKGKEKDQPEK-KKEPKDTPKPKVDPQPKVDPPAP 155
K+EKAEE + + KE K +++Q +K KKE PK K +P+ PP
Sbjct: 181 EAQERELRKREKAEEKERRRKEYDALKAAKREQEKKPKKEANQAPKSKSGSRPRKPPPRK 240
Query: 156 GYPPPYYPFGVCCPECYGGHGG 177
+ +G GG
Sbjct: 241 HTRSWAVLKLLLLLLLFGVAGG 262
>sp|Q5E9X4|LRC59_BOVIN Leucine-rich repeat-containing protein 59 OS=Bos taurus GN=LRRC59
PE=2 SV=1
Length = 306
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 45 VTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQKKKKEEPADKKEPEKKKETPQTEK 104
V KV C ++ + K C + V++ ++ D +++++ +E EKK E Q K
Sbjct: 123 VLAKVAGDCLDEKQCKQC--ANKVLQHMKAVQADQERERQRRLEIDREAEKKWEAKQRAK 180
Query: 105 --------KKEKAEESKPKNKEPAPEKGKEKDQPEK-KKEPKDTPKPKVDPQPKVDPP 153
K+EKAEE + + KE K +++Q +K KKE PK K +P+ PP
Sbjct: 181 EAQERELRKREKAEEKERRRKEYDALKAAKREQEKKPKKETNQAPKSKSSSRPRKPPP 238
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 17/113 (15%)
Query: 40 EKQNKVTIKVVCCCPEKMRD-----KICC--KGDG---VIKSIEIKSPDDQKKKKEEPAD 89
E+ N++ + CC K+ ++ KGD V+++ + + PD++ K+EE
Sbjct: 102 ERTNELLQLIGKCCLSKLSSDEAVKRVLAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRT 161
Query: 90 KKEPEKKKE------TPQTEKKKEKAEESKPKNKEPAPEKGKEKDQPEKKKEP 136
+KE ++ E + + ++K+E E+SKP+ KE EK KE D+ ++ +EP
Sbjct: 162 QKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEADR-DRHREP 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,640,953
Number of Sequences: 539616
Number of extensions: 6599668
Number of successful extensions: 112474
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 2362
Number of HSP's that attempted gapping in prelim test: 51978
Number of HSP's gapped (non-prelim): 34717
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)