Query 043718
Match_columns 228
No_of_seqs 145 out of 1146
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.5 7.2E-14 2.5E-18 96.7 8.3 67 5-77 1-67 (68)
2 1cc8_A Protein (metallochapero 99.4 6.6E-13 2.2E-17 92.1 9.4 70 1-76 1-71 (73)
3 4a4j_A Pacszia, cation-transpo 99.4 4.9E-12 1.7E-16 86.1 9.4 65 6-75 2-69 (69)
4 3dxs_X Copper-transporting ATP 99.3 6.9E-12 2.4E-16 86.7 8.7 68 5-76 1-71 (74)
5 3fry_A Probable copper-exporti 99.3 1.5E-11 5.2E-16 85.8 8.3 68 3-77 2-70 (73)
6 1opz_A Potential copper-transp 99.2 6.5E-11 2.2E-15 79.6 9.0 66 1-66 1-69 (76)
7 2crl_A Copper chaperone for su 99.2 4.5E-11 1.5E-15 89.4 9.0 71 5-80 18-88 (98)
8 2roe_A Heavy metal binding pro 99.2 4.8E-11 1.6E-15 80.1 6.4 58 8-66 2-60 (66)
9 2xmm_A SSR2857 protein, ATX1; 99.2 6.6E-11 2.3E-15 77.3 6.7 59 7-66 2-61 (64)
10 2qif_A Copper chaperone COPZ; 99.1 2.2E-10 7.4E-15 74.7 8.5 62 5-66 1-65 (69)
11 2l3m_A Copper-ION-binding prot 99.1 4.6E-10 1.6E-14 75.1 9.2 63 3-65 2-67 (71)
12 1mwy_A ZNTA; open-faced beta-s 99.1 1.2E-09 4.1E-14 74.3 10.5 62 5-66 2-64 (73)
13 2xmw_A PACS-N, cation-transpor 99.1 1.1E-09 3.6E-14 72.9 10.0 61 6-66 3-65 (71)
14 1aw0_A Menkes copper-transport 99.1 8.8E-10 3E-14 73.7 9.5 61 6-66 3-66 (72)
15 1osd_A MERP, hypothetical prot 99.1 9.3E-10 3.2E-14 73.6 9.3 62 5-66 2-66 (72)
16 1kvi_A Copper-transporting ATP 99.0 1.5E-09 5.1E-14 74.6 9.7 69 4-76 6-77 (79)
17 2k2p_A Uncharacterized protein 99.0 4.1E-10 1.4E-14 82.0 6.8 61 5-66 21-82 (85)
18 1fvq_A Copper-transporting ATP 99.0 9.8E-10 3.4E-14 73.4 8.0 65 7-75 3-69 (72)
19 1yg0_A COP associated protein; 99.0 8E-10 2.7E-14 72.5 7.4 60 7-66 2-63 (66)
20 1cpz_A Protein (COPZ); copper 99.0 1.7E-09 5.9E-14 71.3 8.5 59 8-66 2-63 (68)
21 3cjk_B Copper-transporting ATP 99.0 3.1E-09 1.1E-13 72.1 9.9 61 6-66 2-65 (75)
22 1y3j_A Copper-transporting ATP 99.0 1.3E-09 4.3E-14 74.9 7.7 68 5-76 2-72 (77)
23 1yjr_A Copper-transporting ATP 99.0 2.7E-09 9.1E-14 71.8 9.2 64 1-66 1-67 (75)
24 1q8l_A Copper-transporting ATP 99.0 2.2E-09 7.4E-14 75.8 8.7 69 5-77 8-79 (84)
25 2g9o_A Copper-transporting ATP 99.0 2.3E-09 8E-14 77.7 8.4 70 6-78 3-77 (90)
26 2kt2_A Mercuric reductase; nme 99.0 1.8E-09 6.1E-14 72.0 7.1 58 8-65 2-61 (69)
27 2kyz_A Heavy metal binding pro 98.9 1.3E-09 4.4E-14 73.4 6.0 57 7-66 2-59 (67)
28 2ldi_A Zinc-transporting ATPas 98.9 1.5E-09 5.2E-14 71.4 6.0 61 5-65 2-65 (71)
29 1jww_A Potential copper-transp 98.9 4.3E-09 1.5E-13 71.8 7.5 68 5-76 2-72 (80)
30 2aj0_A Probable cadmium-transp 98.9 5.7E-09 2E-13 70.7 7.2 55 7-66 4-59 (71)
31 2kkh_A Putative heavy metal tr 98.9 2.1E-08 7.1E-13 72.6 10.6 71 4-78 14-87 (95)
32 2ofg_X Zinc-transporting ATPas 98.9 9E-09 3.1E-13 77.8 8.8 63 4-66 6-71 (111)
33 1qup_A Superoxide dismutase 1 98.9 1E-08 3.4E-13 88.4 9.9 69 6-79 6-74 (222)
34 1p6t_A Potential copper-transp 98.8 1.3E-08 4.3E-13 78.2 8.5 68 6-77 74-144 (151)
35 2ew9_A Copper-transporting ATP 98.8 1.3E-08 4.5E-13 77.5 8.5 61 6-66 80-143 (149)
36 2ew9_A Copper-transporting ATP 98.8 2.5E-08 8.7E-13 75.9 9.9 62 5-66 3-67 (149)
37 1jk9_B CCS, copper chaperone f 98.7 2.8E-08 9.6E-13 87.3 8.3 68 6-78 7-74 (249)
38 2rop_A Copper-transporting ATP 98.7 7E-08 2.4E-12 78.9 9.1 68 6-77 122-192 (202)
39 2rop_A Copper-transporting ATP 98.5 2E-07 6.9E-12 76.2 7.3 61 4-64 18-81 (202)
40 1p6t_A Potential copper-transp 98.5 4.3E-07 1.5E-11 69.5 8.5 65 1-65 1-68 (151)
41 3j09_A COPA, copper-exporting 98.0 1E-05 3.4E-10 79.6 8.0 60 7-66 3-65 (723)
42 2raq_A Conserved protein MTH88 95.9 0.044 1.5E-06 42.5 8.6 76 2-78 3-85 (97)
43 2x3d_A SSO6206; unknown functi 95.5 0.11 3.7E-06 40.3 9.5 72 4-77 3-83 (96)
44 3bpd_A Uncharacterized protein 94.3 0.091 3.1E-06 40.9 6.0 71 4-75 5-82 (100)
45 2jsx_A Protein NAPD; TAT, proo 82.0 14 0.00048 27.7 10.2 59 18-77 17-77 (95)
46 2cpq_A FragIle X mental retard 80.7 4.2 0.00014 30.7 6.2 40 21-62 34-73 (91)
47 3cq1_A Putative uncharacterize 76.1 4 0.00014 30.3 4.9 35 7-41 42-82 (103)
48 3lno_A Putative uncharacterize 72.5 4.2 0.00014 30.6 4.2 35 7-41 45-86 (108)
49 1uwd_A Hypothetical protein TM 71.1 6.1 0.00021 29.2 4.8 35 7-41 43-83 (103)
50 1owx_A Lupus LA protein, SS-B, 61.6 28 0.00095 27.1 7.1 55 7-63 18-75 (121)
51 1t1v_A SH3BGRL3, SH3 domain-bi 61.4 38 0.0013 23.6 7.3 48 7-66 3-55 (93)
52 2kgs_A Uncharacterized protein 49.1 8.4 0.00029 30.1 2.2 30 25-55 68-97 (132)
53 2fy1_A RNA-binding motif prote 42.9 88 0.003 22.7 6.9 61 1-63 1-67 (116)
54 3pro_C Alpha-lytic protease; P 41.2 72 0.0025 26.2 6.7 46 30-76 113-158 (166)
55 2nyt_A Probable C->U-editing e 41.0 23 0.00078 29.7 3.7 32 7-38 84-116 (190)
56 2cvi_A 75AA long hypothetical 41.0 84 0.0029 21.5 7.4 58 8-66 4-61 (83)
57 2lxf_A Uncharacterized protein 38.7 1.4E+02 0.0047 23.3 8.1 73 2-76 30-108 (121)
58 2ctf_A Vigilin; K homology typ 34.8 56 0.0019 24.3 4.7 41 21-62 47-87 (102)
59 1wh9_A 40S ribosomal protein S 33.4 66 0.0023 23.8 4.9 45 22-66 11-69 (92)
60 1jdq_A TM006 protein, hypothet 32.6 1.5E+02 0.0051 21.9 7.8 51 8-67 27-79 (98)
61 1fo5_A Thioredoxin; disulfide 31.3 67 0.0023 20.7 4.2 30 13-42 11-44 (85)
62 1wg1_A KIAA1579 protein, homol 30.9 1.1E+02 0.0037 20.7 5.4 53 9-64 7-60 (88)
63 3mso_A Steroid delta-isomerase 30.1 20 0.0007 27.5 1.6 38 29-67 95-132 (143)
64 2ko1_A CTR148A, GTP pyrophosph 29.0 1.1E+02 0.0036 20.5 5.0 14 18-31 17-30 (88)
65 3flj_A Uncharacterized protein 28.6 21 0.00071 28.8 1.4 38 29-67 102-139 (155)
66 2grx_C Protein TONB; beta barr 27.9 13 0.00043 32.3 0.0 8 113-120 85-92 (229)
67 2y3m_A Emhofq, protein transpo 27.1 1.2E+02 0.0041 23.6 5.7 42 5-50 105-152 (175)
68 2zbc_A 83AA long hypothetical 26.8 1.4E+02 0.0049 19.8 7.4 47 20-66 15-61 (83)
69 2e0q_A Thioredoxin; electron t 26.2 1.4E+02 0.0047 19.5 5.3 35 8-42 19-57 (104)
70 2khp_A Glutaredoxin; thioredox 26.2 93 0.0032 20.9 4.3 33 7-41 7-39 (92)
71 2y9k_A Protein INVG; protein t 25.9 99 0.0034 23.7 4.9 54 5-61 74-130 (137)
72 3qfa_C Thioredoxin; protein-pr 25.5 1.4E+02 0.0048 20.9 5.4 36 8-43 34-73 (116)
73 3gzb_A Putative snoal-like pol 25.1 58 0.002 26.8 3.4 34 29-62 119-152 (154)
74 2ct6_A SH3 domain-binding glut 24.9 1.1E+02 0.0036 22.3 4.7 46 8-65 10-60 (111)
75 2e9h_A EIF-5, eukaryotic trans 24.2 95 0.0032 25.5 4.6 27 35-62 71-97 (157)
76 1qd1_A Formiminotransferase-cy 24.1 87 0.003 28.6 4.8 47 20-67 19-67 (325)
77 2qx0_A 7,8-dihydro-6-hydroxyme 23.7 2.6E+02 0.009 22.6 7.2 57 5-62 1-75 (159)
78 2ytc_A PRE-mRNA-splicing facto 22.9 1.7E+02 0.0057 19.2 6.7 54 8-63 13-67 (85)
79 2k6g_A Replication factor C su 22.0 73 0.0025 24.1 3.3 27 40-67 33-62 (109)
80 2djw_A Probable transcriptiona 21.9 1.9E+02 0.0065 20.0 5.4 45 20-64 15-59 (92)
81 3gnj_A Thioredoxin domain prot 21.8 1.8E+02 0.0062 19.4 5.2 35 8-42 25-64 (111)
82 3f8x_A Putative delta-5-3-keto 21.7 35 0.0012 26.7 1.5 38 29-67 104-141 (148)
83 2cpj_A Non-POU domain-containi 21.3 2E+02 0.0069 19.6 6.1 53 9-63 17-70 (99)
84 4dvc_A Thiol:disulfide interch 20.4 1.7E+02 0.006 21.7 5.3 20 13-32 30-52 (184)
85 3q9p_A Heat shock protein beta 20.3 73 0.0025 22.5 2.9 22 29-50 14-37 (85)
86 1urr_A CG18505 protein; acylph 20.2 2.6E+02 0.009 20.5 7.4 59 6-65 11-73 (102)
87 1r7h_A NRDH-redoxin; thioredox 20.1 1.6E+02 0.0054 18.5 4.3 28 12-41 7-34 (75)
88 3die_A Thioredoxin, TRX; elect 20.1 2E+02 0.0067 19.0 5.4 34 8-41 22-60 (106)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.50 E-value=7.2e-14 Score=96.71 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=59.9
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeCC
Q 043718 5 VTTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSP 77 (228)
Q Consensus 5 ~~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVsp 77 (228)
|++++|+|+|+|.+|+++|+++|.+++|| ++++|+.+++++|++. ++.+.|+++|++.+. .++++++
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy----~~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGK----TVSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTCS----CEEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEec-CCHHHHHHHHHHcCC----ceEecCC
Confidence 45788999999999999999999999999 9999999999999997 899999999994443 6888765
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.44 E-value=6.6e-13 Score=92.12 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=60.2
Q ss_pred CCCCceEEEEEEeccChhhHHHHHHHHhcCC-CceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 1 MPDKVTTMVLKVDLQCSKCYKKVKKVLSKFP-QIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 1 MAek~~tvvLKV~M~C~gCakKIkKaL~kl~-GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
||. |++++|+|+|+|.+|+++|+++|.+++ ||.++++|+.+++++|.+. ++.+.|+++|.+. |- .++++.
T Consensus 1 m~~-m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~-Gy---~~~~~~ 71 (73)
T 1cc8_A 1 MAE-IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKT-GK---EVRSGK 71 (73)
T ss_dssp -CC-CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTT-SS---CEEEEE
T ss_pred CCC-ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHh-CC---Cceeee
Confidence 553 667899999999999999999999999 9999999999999999987 8999999999854 43 465553
No 3
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.35 E-value=4.9e-12 Score=86.11 Aligned_cols=65 Identities=15% Similarity=0.360 Sum_probs=57.6
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEE--eeccCHHHHHHHHHHhcCCccccEEEe
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIK--VVCCCPEKMRDKICCKGDGVIKSIEIK 75 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~--G~~vDPekLv~aL~kK~gK~IK~aEIV 75 (228)
++++|+| +|+|.+|+++|+++|.+++||.++.+|+.+++++|+ +. ++.+.|+++|.+.+. .++++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~-~~~~~i~~~i~~~Gy----~~~~~ 69 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGY----HARVL 69 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTT-CCHHHHHHHHHHTTC----EEEEC
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCC-CCHHHHHHHHHHcCC----ceEeC
Confidence 5789999 999999999999999999999999999999999998 55 799999999995544 56553
No 4
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.32 E-value=6.9e-12 Score=86.67 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=59.4
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|+.. .++.+.|+++|.+.+. .+++++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGF----EAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTC----EEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCC----ceEEcc
Confidence 57889999 99999999999999999999999999999999999742 2588999999996554 577764
No 5
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.27 E-value=1.5e-11 Score=85.79 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=60.5
Q ss_pred CCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeCC
Q 043718 3 DKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSP 77 (228)
Q Consensus 3 ek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVsp 77 (228)
+.|.+++|+| +|+|.+|+.+|+++|.+ +||.++.+|+.+++++|+.. +.+.|+++|++.+. .+++++.
T Consensus 2 ~~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy----~~~~~~~ 70 (73)
T 3fry_A 2 DSVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGY----QAKLRSS 70 (73)
T ss_dssp CCCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTC----EEEECCS
T ss_pred CccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCC----ceEecCc
Confidence 4678899999 99999999999999999 99999999999999999876 88999999995544 6777764
No 6
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.22 E-value=6.5e-11 Score=79.57 Aligned_cols=66 Identities=18% Similarity=0.340 Sum_probs=58.5
Q ss_pred CCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 1 MPDKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 1 MAek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
|++.|.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.+.|...+.
T Consensus 1 ~~~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 69 (76)
T 1opz_A 1 MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69 (76)
T ss_dssp CCCCCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred CCccceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 899999999999 99999999999999999999999999999999999732 2577889998885543
No 7
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.5e-11 Score=89.44 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=62.1
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeCCCCC
Q 043718 5 VTTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDDQ 80 (228)
Q Consensus 5 ~~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVsp~~p 80 (228)
+++++|+|.|+|.+|+++|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|.+ .|- .++++.....
T Consensus 18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~-~~~~~i~~~i~~-~Gy---~~~~~~~~~~ 88 (98)
T 2crl_A 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT-LPSQEVQALLEG-TGR---QAVLKGMGSG 88 (98)
T ss_dssp CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEES-SCHHHHHHHHHT-TTS---CEEEEESCCC
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHH-hCC---ceEEccCCCC
Confidence 4577899999999999999999999999999999999999999987 899999999985 442 6888776543
No 8
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.17 E-value=4.8e-11 Score=80.06 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=52.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 8 MVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 8 vvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|.++|.+.+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy 60 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT-ADPKALVQAVEEEGY 60 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSC-CCHHHHHHHHHTTTC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCC-CCHHHHHHHHHHcCC
Confidence 46889 99999999999999999999999999999999999766 799999999985433
No 9
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.17 E-value=6.6e-11 Score=77.32 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=53.7
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|.++|...+.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G~ 61 (64)
T 2xmm_A 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGY 61 (64)
T ss_dssp CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECS-SCHHHHHHHHHHTTC
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEec-CCHHHHHHHHHHcCC
Confidence 467999 99999999999999999999999999999999999987 789999999985443
No 10
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.15 E-value=2.2e-10 Score=74.69 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=53.3
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
|.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+.
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 65 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 45678999 99999999999999999999999999999999999742 2577889988885443
No 11
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.11 E-value=4.6e-10 Score=75.11 Aligned_cols=63 Identities=11% Similarity=0.313 Sum_probs=54.7
Q ss_pred CCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhc
Q 043718 3 DKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKG 65 (228)
Q Consensus 3 ek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~ 65 (228)
+.|.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+
T Consensus 2 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 67 (71)
T 2l3m_A 2 NAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQG 67 (71)
T ss_dssp CSEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3467889999 99999999999999999999999999999999999732 257788999888543
No 12
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.09 E-value=1.2e-09 Score=74.25 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=53.0
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.......+.|+++|...+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy 64 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTC
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCC
Confidence 56789999 999999999999999999999999999999999998642235678888875544
No 13
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.09 E-value=1.1e-09 Score=72.88 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=52.1
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee-ccCHHHHHHHHHHhcC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV-CCCPEKMRDKICCKGD 66 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~-~vDPekLv~aL~kK~g 66 (228)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~ 65 (71)
T 2xmw_A 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGY 65 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTC
T ss_pred cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 4678999 99999999999999999999999999999999999732 1577889998885544
No 14
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.08 E-value=8.8e-10 Score=73.69 Aligned_cols=61 Identities=21% Similarity=0.378 Sum_probs=53.0
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCC
Confidence 3578999 99999999999999999999999999999999999753 1467889999985544
No 15
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.07 E-value=9.3e-10 Score=73.57 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=54.0
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
+++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45788999 99999999999999999999999999999999999743 2577889999986544
No 16
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.05 E-value=1.5e-09 Score=74.65 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=58.2
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 4 KVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 4 k~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
.+++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+. .+.+++
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~ 77 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF----DAVIHN 77 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCC----CEEECC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCC----ceEecC
Confidence 467889999 99999999999999999999999999999999999743 1467889999986544 466554
No 17
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.04 E-value=4.1e-10 Score=82.02 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=55.4
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
+.+++|+| +|+|.+|+++|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|...+.
T Consensus 21 ~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~-~~~~~i~~~i~~~Gy 82 (85)
T 2k2p_A 21 GAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV-SDAAHIAEIITAAGY 82 (85)
T ss_dssp -CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESC-CCHHHHHHHHHHTTC
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEec-CCHHHHHHHHHHcCC
Confidence 56788999 99999999999999999999999999999999999987 899999999985543
No 18
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.03 E-value=9.8e-10 Score=73.44 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=55.5
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee-ccCHHHHHHHHHHhcCCccccEEEe
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV-CCCPEKMRDKICCKGDGVIKSIEIK 75 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~-~vDPekLv~aL~kK~gK~IK~aEIV 75 (228)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+. .+.++
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~----~~~~~ 69 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGF----DCEIL 69 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTC----CEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCC----ceEEc
Confidence 578999 99999999999999999999999999999999999742 2578889999986544 46555
No 19
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.03 E-value=8e-10 Score=72.49 Aligned_cols=60 Identities=12% Similarity=0.314 Sum_probs=52.0
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee-ccCHHHHHHHHHHhcC
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV-CCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~-~vDPekLv~aL~kK~g 66 (228)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... ..+.+.|.++|...+.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~ 63 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQ 63 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTC
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 467999 99999999999999999999999999999999999743 1367888988886544
No 20
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.01 E-value=1.7e-09 Score=71.26 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=51.1
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 8 MVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 8 vvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.+.|...+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 63 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 36889 99999999999999999999999999999999999753 2577889998885443
No 21
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.01 E-value=3.1e-09 Score=72.13 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=53.1
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+.
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (75)
T 3cjk_B 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65 (75)
T ss_dssp EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4678999 99999999999999999999999999999999999743 1477889999985544
No 22
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.00 E-value=1.3e-09 Score=74.89 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=57.7
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+. .+.++.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~ 72 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF----GATVIE 72 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTS----CEEEES
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC----ceEECC
Confidence 67889999 99999999999999999999999999999999999742 1577889999986544 455554
No 23
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.00 E-value=2.7e-09 Score=71.82 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=53.6
Q ss_pred CCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 1 MPDKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 1 MAek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
|++. ++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+.
T Consensus 1 m~~~--~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 67 (75)
T 1yjr_A 1 MGDG--VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67 (75)
T ss_dssp CCCC--CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHC
T ss_pred CCce--EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4533 578999 99999999999999999999999999999999999753 1356778888886554
No 24
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=98.99 E-value=2.2e-09 Score=75.85 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=57.5
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeCC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKSP 77 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVsp 77 (228)
.++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+. .+.++..
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~~ 79 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF----PAFVKKQ 79 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTC----CEECSCC
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC----ceEecCC
Confidence 45788999 99999999999999999999999999999999999753 2577889999985544 4655543
No 25
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=98.96 E-value=2.3e-09 Score=77.72 Aligned_cols=70 Identities=17% Similarity=0.335 Sum_probs=57.6
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHh--cCCccccEEEeCCC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCK--GDGVIKSIEIKSPD 78 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK--~gK~IK~aEIVsp~ 78 (228)
++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|... +| ..+.++++.
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Gg---y~~~~~~~~ 77 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGL---YRVSITSEV 77 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTT---CEEECCCCC
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCC---eEEEEeCCC
Confidence 3578999 99999999999999999999999999999999999742 15778899999855 22 257666653
No 26
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=98.96 E-value=1.8e-09 Score=72.04 Aligned_cols=58 Identities=22% Similarity=0.493 Sum_probs=50.3
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee-ccCHHHHHHHHHHhc
Q 043718 8 MVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV-CCCPEKMRDKICCKG 65 (228)
Q Consensus 8 vvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~-~vDPekLv~aL~kK~ 65 (228)
++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G 61 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLG 61 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCC
Confidence 46889 99999999999999999999999999999999999742 146788999988543
No 27
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=98.95 E-value=1.3e-09 Score=73.38 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=50.0
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
+++|+| +|+|.+|+.+|+++|.++ ||.++.+|+.+++++|... .+ +.|+++|...+.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~-~~-~~i~~~i~~~Gy 59 (67)
T 2kyz_A 2 RYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE-NL-DSVLKKLEEIDY 59 (67)
T ss_dssp EEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECS-CH-HHHHHHHHTTTC
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEEC-CH-HHHHHHHHHcCC
Confidence 467999 999999999999999999 9999999999999999876 34 788888885443
No 28
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=98.94 E-value=1.5e-09 Score=71.41 Aligned_cols=61 Identities=13% Similarity=0.386 Sum_probs=52.2
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhc
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKG 65 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~ 65 (228)
+.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 65 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTT
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 45678999 99999999999999999999999999999999999742 146678888888443
No 29
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=98.90 E-value=4.3e-09 Score=71.85 Aligned_cols=68 Identities=13% Similarity=0.310 Sum_probs=56.7
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
|.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+. .+.+..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~----~~~~~~ 72 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY----KLKLKG 72 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTS----EEEECC
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC----eEEecC
Confidence 56788999 99999999999999999999999999999999999642 2577889998885443 455543
No 30
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=98.87 E-value=5.7e-09 Score=70.71 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=46.8
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. .+ .+.|...+.
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~-~~----~~~i~~~Gy 59 (71)
T 2aj0_A 4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-AS----IQQVEQAGA 59 (71)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEES-CC----HHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEec-Cc----HHHHHHhCC
Confidence 578999 99999999999999999999999999999999999876 44 345554443
No 31
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=98.87 E-value=2.1e-08 Score=72.64 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=59.0
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeCCC
Q 043718 4 KVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKSPD 78 (228)
Q Consensus 4 k~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVsp~ 78 (228)
.|.+++|.| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+. .+.++..+
T Consensus 14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~~~ 87 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARL----EANVRVNG 87 (95)
T ss_dssp CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTC----CEEESCCC
T ss_pred ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCC----ceEEecCC
Confidence 367789999 99999999999999999999999999999999999753 1467889998886544 46665543
No 32
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=98.87 E-value=9e-09 Score=77.77 Aligned_cols=63 Identities=14% Similarity=0.337 Sum_probs=54.7
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 4 KVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 4 k~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
.|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|+.. .++.+.|+++|...+.
T Consensus 6 ~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy 71 (111)
T 2ofg_X 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 71 (111)
T ss_dssp CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTC
T ss_pred cceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 367889999 99999999999999999999999999999999999743 1467889998885544
No 33
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.86 E-value=1e-08 Score=88.40 Aligned_cols=69 Identities=16% Similarity=0.386 Sum_probs=60.7
Q ss_pred eEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeCCCC
Q 043718 6 TTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPDD 79 (228)
Q Consensus 6 ~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVsp~~ 79 (228)
.+++|+|.|+|.+|+++|+++|.+++||.++++|+.+++++|.+. ++.+.|+++|++.+. .+.++....
T Consensus 6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aI~~~Gy----~a~~~~~~~ 74 (222)
T 1qup_A 6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGK----DAIIRGAGK 74 (222)
T ss_dssp EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTC----CCEEECCSC
T ss_pred eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEecc-CCHHHHHHHHHHcCC----ccccccCCC
Confidence 467899999999999999999999999999999999999999987 899999999985444 577776543
No 34
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.83 E-value=1.3e-08 Score=78.19 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=57.7
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeCC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKSP 77 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVsp 77 (228)
.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|+.. .++.+.|+++|..-+. .+.+++.
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~~ 144 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY----KLKLKGE 144 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTC----CEEESCS
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCC----CeEEcCc
Confidence 4678999 99999999999999999999999999999999999731 2688999999986544 5666554
No 35
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-08 Score=77.46 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=53.6
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...|.
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 143 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGF 143 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTC
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4678999 99999999999999999999999999999999999742 1577889999986544
No 36
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-08 Score=75.87 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=54.3
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+.
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 67 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGF 67 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCC
Confidence 67899999 99999999999999999999999999999999999742 2567889999886544
No 37
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.72 E-value=2.8e-08 Score=87.26 Aligned_cols=68 Identities=16% Similarity=0.389 Sum_probs=59.2
Q ss_pred eEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeCCC
Q 043718 6 TTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKSPD 78 (228)
Q Consensus 6 ~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVsp~ 78 (228)
.+++|+|.|+|.+|+++|+++|.+++||.++++|+.+++++|.+. ++.+.|+++|++.+. .+.++...
T Consensus 7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aIe~~Gy----~a~~~~~~ 74 (249)
T 1jk9_B 7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGK----DAIIRGAG 74 (249)
T ss_dssp EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTTC----CCEEEEES
T ss_pred eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecC-CCHHHHHHHHHHhCC----CcccccCC
Confidence 467899999999999999999999999999999999999999987 899999999985443 46665543
No 38
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.68 E-value=7e-08 Score=78.87 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=56.8
Q ss_pred eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcCCccccEEEeCC
Q 043718 6 TTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGDGVIKSIEIKSP 77 (228)
Q Consensus 6 ~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~gK~IK~aEIVsp 77 (228)
.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|...+. .+.++..
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy----~~~~~~~ 192 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGF----EASVVSE 192 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTS----CEEEC--
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCC----ceEEcCC
Confidence 5688999 99999999999999999999999999999999999742 2578889999986544 5666654
No 39
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.51 E-value=2e-07 Score=76.16 Aligned_cols=61 Identities=16% Similarity=0.400 Sum_probs=52.1
Q ss_pred CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHh
Q 043718 4 KVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCK 64 (228)
Q Consensus 4 k~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK 64 (228)
.|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...
T Consensus 18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 366788999 99999999999999999999999999999999999743 15678888888743
No 40
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.50 E-value=4.3e-07 Score=69.54 Aligned_cols=65 Identities=18% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhc
Q 043718 1 MPDKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKG 65 (228)
Q Consensus 1 MAek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~ 65 (228)
|-..+.++.|.| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|.++|...+
T Consensus 1 ~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 68 (151)
T 1p6t_A 1 MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLG 68 (151)
T ss_dssp CCCCCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred CCCcceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcC
Confidence 556677888999 99999999999999999999999999999999998632 146788888887544
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.01 E-value=1e-05 Score=79.62 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.4
Q ss_pred EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee--ccCHHHHHHHHHHhcC
Q 043718 7 TMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV--CCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~--~vDPekLv~aL~kK~g 66 (228)
+++|+| +|+|.+|+.+|+++|.+++||.++++|+.+++++|+.. .++.+.|+++|.+.+.
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy 65 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCC
Confidence 578999 99999999999999999999999999999999999732 2688999999996554
No 42
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=95.91 E-value=0.044 Score=42.54 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCCCE--EEEEeeccCHHHHHHHHHHhcCCccccEEE
Q 043718 2 PDKVTTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIY-----DEKQNK--VTIKVVCCCPEKMRDKICCKGDGVIKSIEI 74 (228)
Q Consensus 2 Aek~~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~v-----D~k~~k--VtV~G~~vDPekLv~aL~kK~gK~IK~aEI 74 (228)
|..++.++|-|-=-=+==.-.+-+.|+++.||..|.+ |.++.. +||+|..+|.+.|.++|. ..|.+|.||.-
T Consensus 3 ~~~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE-~~Gg~IHSIDE 81 (97)
T 2raq_A 3 AKGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIE-SYGGSIHSVDE 81 (97)
T ss_dssp CCSEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHH-HTTCEEEEEEE
T ss_pred ccCceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeee
Confidence 5568888888821123345567889999999888753 444443 555687799999999999 56668888884
Q ss_pred eCCC
Q 043718 75 KSPD 78 (228)
Q Consensus 75 Vsp~ 78 (228)
|..+
T Consensus 82 VvaG 85 (97)
T 2raq_A 82 VVAG 85 (97)
T ss_dssp EEEE
T ss_pred eeec
Confidence 4333
No 43
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.11 Score=40.26 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=50.4
Q ss_pred CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEc---CCCE----EEEEeeccCHHHHHHHHHHhcCCccccEEE
Q 043718 4 KVTTMVLKV--DLQCSKCYKKVKKVLSKFPQIQDQIYDE---KQNK----VTIKVVCCCPEKMRDKICCKGDGVIKSIEI 74 (228)
Q Consensus 4 k~~tvvLKV--~M~C~gCakKIkKaL~kl~GV~sV~vD~---k~~k----VtV~G~~vDPekLv~aL~kK~gK~IK~aEI 74 (228)
.++.++|-| .+|=. =.-.+-+.|++++||..|.+.+ +.++ +||+|..+|.+.|.++|. ..|.+|.||.-
T Consensus 3 ~irRlVLDVlKP~h~P-~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE-~~Gg~IHSIDE 80 (96)
T 2x3d_A 3 AIRRLVLDVLKPIRGT-SIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLE-EEGCAIHSIDE 80 (96)
T ss_dssp CEEEEEEEEEEESSSS-CHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHH-HTTCEEEEEEE
T ss_pred ceEEEEEEcccCCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeee
Confidence 566777777 43433 2456778999999998885432 3333 555687799999999999 56668888884
Q ss_pred eCC
Q 043718 75 KSP 77 (228)
Q Consensus 75 Vsp 77 (228)
|..
T Consensus 81 Vva 83 (96)
T 2x3d_A 81 VVS 83 (96)
T ss_dssp EEE
T ss_pred eee
Confidence 433
No 44
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=94.27 E-value=0.091 Score=40.94 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=49.5
Q ss_pred CceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEc---CCCE----EEEEeeccCHHHHHHHHHHhcCCccccEEEe
Q 043718 4 KVTTMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDE---KQNK----VTIKVVCCCPEKMRDKICCKGDGVIKSIEIK 75 (228)
Q Consensus 4 k~~tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~---k~~k----VtV~G~~vDPekLv~aL~kK~gK~IK~aEIV 75 (228)
.++.++|-|-=-=+==.-.+-+.|++++||..|.+.+ +.++ +||+|..+|.+.|.++|. ..|.+|-+|.-|
T Consensus 5 ~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE-~~GgvIHSIDEV 82 (100)
T 3bpd_A 5 GLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIE-DMGGVIHSVDEV 82 (100)
T ss_dssp SEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHH-TTTCEEEEEEEE
T ss_pred cceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHH-HcCCeEEeeeee
Confidence 3677777772112333556788999999998885432 3333 455687799999999999 566688888733
No 45
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=82.04 E-value=14 Score=27.67 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCC--ccccEEEeCC
Q 043718 18 KCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDG--VIKSIEIKSP 77 (228)
Q Consensus 18 gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK--~IK~aEIVsp 77 (228)
+=...|.++|.+|+||+-..+|..+++++|+-..-+.+.|.+.|. +..+ -|.++.++.-
T Consensus 17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~-~I~~i~GVlst~lvy~ 77 (95)
T 2jsx_A 17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIE-SVRNVEGVLAVSLVYH 77 (95)
T ss_dssp TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHH-HHTTSTTEEEEEESSC
T ss_pred CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHH-HHhcCCCccEEeEEEE
Confidence 448899999999999955456776777777533236677777774 4443 3566777654
No 46
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=80.72 E-value=4.2 Score=30.66 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHH
Q 043718 21 KKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKIC 62 (228)
Q Consensus 21 kKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~ 62 (228)
.+.-+.|...-|++++++|.++++|+|.|. |.+.+..++.
T Consensus 34 Gk~Ik~I~e~tGv~~IdI~eddG~V~I~g~--~~ea~~~A~~ 73 (91)
T 2cpq_A 34 GSNIQQARKVPGVTAIELDEDTGTFRIYGE--SADAVKKARG 73 (91)
T ss_dssp THHHHHHHTSTTEEEEEEETTTTEEEEEES--SHHHHHHHHH
T ss_pred cHHHHHHHHHhCCeEEEEEcCCCEEEEEEC--CHHHHHHHHH
Confidence 345566677789988999987899999985 7777766655
No 47
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=76.06 E-value=4 Score=30.26 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=28.0
Q ss_pred EEEEEEeccChhhH------HHHHHHHhcCCCceeEEEEcC
Q 043718 7 TMVLKVDLQCSKCY------KKVKKVLSKFPQIQDQIYDEK 41 (228)
Q Consensus 7 tvvLKV~M~C~gCa------kKIkKaL~kl~GV~sV~vD~k 41 (228)
.+.|.+.|+..+|- +.|+++|..++||.+|++++.
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 45677777777774 679999999999999988853
No 48
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=72.49 E-value=4.2 Score=30.63 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=27.9
Q ss_pred EEEEEEeccChhh------HHHHHHHH-hcCCCceeEEEEcC
Q 043718 7 TMVLKVDLQCSKC------YKKVKKVL-SKFPQIQDQIYDEK 41 (228)
Q Consensus 7 tvvLKV~M~C~gC------akKIkKaL-~kl~GV~sV~vD~k 41 (228)
.+.|.+-|+-.+| ...|+++| ..++||.+|.+++.
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 4667777777777 67899999 99999999988754
No 49
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=71.07 E-value=6.1 Score=29.20 Aligned_cols=35 Identities=6% Similarity=0.201 Sum_probs=26.8
Q ss_pred EEEEEEeccChhhH------HHHHHHHhcCCCceeEEEEcC
Q 043718 7 TMVLKVDLQCSKCY------KKVKKVLSKFPQIQDQIYDEK 41 (228)
Q Consensus 7 tvvLKV~M~C~gCa------kKIkKaL~kl~GV~sV~vD~k 41 (228)
.+.|.+.|+..+|. +.|+++|..++||.+|++++.
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 45667766666663 568999999999999988743
No 50
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.56 E-value=28 Score=27.10 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=42.4
Q ss_pred EEEEEE-eccCh-hhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccC-HHHHHHHHHH
Q 043718 7 TMVLKV-DLQCS-KCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCC-PEKMRDKICC 63 (228)
Q Consensus 7 tvvLKV-~M~C~-gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vD-PekLv~aL~k 63 (228)
-++|.| ++.-+ -....|+.+++.+..|..|.+-....+-.|.-. + .....++|..
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~--~~~~~A~~av~~ 75 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFK--EKAKEALGKAKD 75 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEES--SCHHHHHHHHHH
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEEC--CChHHHHHHHHH
Confidence 356777 77777 789999999999999999999888888777644 5 4555556664
No 51
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=61.35 E-value=38 Score=23.57 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred EEEEEEeccChhhH-----HHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 7 TMVLKVDLQCSKCY-----KKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 7 tvvLKV~M~C~gCa-----kKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
.++|-..-.|..|. +++++.|..+ ||.-..+|... + ..+++.|++++|
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~-~i~~~~~di~~----------~-~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGK-RIQYQLVDISQ----------D-NALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCCEEEETTS----------C-HHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHC-CCceEEEECCC----------C-HHHHHHHHHHhC
Confidence 35555567899997 8899998875 67666666542 2 345666776666
No 52
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=49.11 E-value=8.4 Score=30.10 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=19.8
Q ss_pred HHHhcCCCceeEEEEcCCCEEEEEeeccCHH
Q 043718 25 KVLSKFPQIQDQIYDEKQNKVTIKVVCCCPE 55 (228)
Q Consensus 25 KaL~kl~GV~sV~vD~k~~kVtV~G~~vDPe 55 (228)
.+|..+-.+..++++.++++||++|. ++-.
T Consensus 68 ~aL~~~~~l~~i~V~V~~g~VtLsG~-v~s~ 97 (132)
T 2kgs_A 68 PVFTASVPIPDFGLKVERDTVTLTGT-APSS 97 (132)
T ss_dssp HHHHHHTTCTTCEEEEEETEEEEECE-ESSH
T ss_pred HHHHhcCcCCceEEEEECCEEEEEEE-ECCH
Confidence 34444333346678888999999998 5543
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=42.93 E-value=88 Score=22.68 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCC-----CEEEEEeeccCHHHHHHHHHH
Q 043718 1 MPDKVTTMVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQ-----NKVTIKVVCCCPEKMRDKICC 63 (228)
Q Consensus 1 MAek~~tvvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~-----~kVtV~G~~vDPekLv~aL~k 63 (228)
|.+.-...+|-| +|.=+--...|++.++.+..|.+|.+-.+. +-..|+-. +.+....+|..
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~--~~~~A~~Ai~~ 67 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFE--NPADAKNAAKD 67 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECS--SHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC--CHHHHHHHHHH
Confidence 555555556777 888888899999999999999999987654 55666543 66777777764
No 54
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=41.24 E-value=72 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCCccccEEEeC
Q 043718 30 FPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDGVIKSIEIKS 76 (228)
Q Consensus 30 l~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK~IK~aEIVs 76 (228)
-.||.+..||..+|+|+|+...-..... .+|.++.|-.--.++|+.
T Consensus 113 ~~~v~~W~VD~~tN~VVV~a~~~~~~aa-~~f~~~AG~~~~av~V~~ 158 (166)
T 3pro_C 113 LDGVQSWYVDPRSNAVVVKVDDGATDAG-VDFVALSGADSAQVRIES 158 (166)
T ss_dssp CTTEEEEEEEGGGTEEEEEEETTCHHHH-HHHHHHHTCCTTTEEEEE
T ss_pred CCCCceEEEeCCCCeEEEEeCCCChHHH-HHHHHHhCCCCCceEEEE
Confidence 3478899999999999998641233443 555556553223466653
No 55
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=41.01 E-value=23 Score=29.65 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.8
Q ss_pred EEEEEEecc-ChhhHHHHHHHHhcCCCceeEEE
Q 043718 7 TMVLKVDLQ-CSKCYKKVKKVLSKFPQIQDQIY 38 (228)
Q Consensus 7 tvvLKV~M~-C~gCakKIkKaL~kl~GV~sV~v 38 (228)
..+|-|.|. |..|++.|..+|.+.+||..|.+
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~ 116 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLIL 116 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEE
Confidence 456667444 99999999999999999988876
No 56
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=41.01 E-value=84 Score=21.49 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=34.8
Q ss_pred EEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 8 MVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 8 vvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
+.+.|.+.=.. ...+.++|+++++|..+-.=..+.-+.+....-|.+.|-+.|.++..
T Consensus 4 A~v~v~~~~~~-~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 4 AFILMVTAAGK-EREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEKIR 61 (83)
T ss_dssp EEEEEEECTTC-HHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTTGG
T ss_pred EEEEEEEcCCC-HHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHHHHhc
Confidence 33444444334 37899999999999988654433333333221477777776654433
No 57
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=38.71 E-value=1.4e+02 Score=23.26 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEE--eeccCHHHHHHHHHHhcC--CccccEEEe
Q 043718 2 PDKVTTMVLKV--DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIK--VVCCCPEKMRDKICCKGD--GVIKSIEIK 75 (228)
Q Consensus 2 Aek~~tvvLKV--~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~--G~~vDPekLv~aL~kK~g--K~IK~aEIV 75 (228)
++.+.++.|+| ..+=-+=..-+.+...+| |+.-..-|+.+++|.|. |..-+.+.++++|++ +- ..|.+|++-
T Consensus 30 ~~di~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~-gPp~A~V~~v~~~ 107 (121)
T 2lxf_A 30 SEDVTTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK-GSPKSVVKKVSIH 107 (121)
T ss_dssp STTEEEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH-CCTTCCEEEEEEE
T ss_pred ccCEEEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh-CCCCCEEEEEEEE
Confidence 45577888888 333334444455544444 88889999999977775 552345667777763 32 245566554
Q ss_pred C
Q 043718 76 S 76 (228)
Q Consensus 76 s 76 (228)
.
T Consensus 108 ~ 108 (121)
T 2lxf_A 108 A 108 (121)
T ss_dssp C
T ss_pred E
Confidence 3
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=34.79 E-value=56 Score=24.33 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHH
Q 043718 21 KKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKIC 62 (228)
Q Consensus 21 kKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~ 62 (228)
..|++...+..+| .|.|.-.++.|+|+|..-..++.+..|.
T Consensus 47 ~~Ik~i~~~~~~v-~I~fp~~~~~ItI~G~~~~V~~a~~~I~ 87 (102)
T 2ctf_A 47 QNLAKITQQMPKV-HIEFTEGEDKITLEGPTEDVSVAQEQIE 87 (102)
T ss_dssp CHHHHHHHHCSSS-EEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCc-EEEeCCCCCEEEEECCHHHHHHHHHHHH
Confidence 4566666667675 5666667899999996323344444443
No 59
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=33.41 E-value=66 Score=23.78 Aligned_cols=45 Identities=4% Similarity=-0.041 Sum_probs=31.4
Q ss_pred HHHHHHhc-C--CCceeEEEEcCCCEEEEE----------ee-ccCHHHHHHHHHHhcC
Q 043718 22 KVKKVLSK-F--PQIQDQIYDEKQNKVTIK----------VV-CCCPEKMRDKICCKGD 66 (228)
Q Consensus 22 KIkKaL~k-l--~GV~sV~vD~k~~kVtV~----------G~-~vDPekLv~aL~kK~g 66 (228)
+|++-|.+ + .||..|++.-..+++.|+ |. ..+-++|...|++.++
T Consensus 11 ~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~ 69 (92)
T 1wh9_A 11 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFG 69 (92)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhC
Confidence 45555532 2 599999999988888885 11 0135778888888885
No 60
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=32.60 E-value=1.5e+02 Score=21.85 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.6
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEee-ccCHHHHHHHHHHhcCC
Q 043718 8 MVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVV-CCCPEKMRDKICCKGDG 67 (228)
Q Consensus 8 vvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~-~vDPekLv~aL~kK~gK 67 (228)
.+|-+ ++.|..=.-+++++|.++.. .+.+.|..+ ....+.|...++..+..
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~ 79 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHE 79 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 56777 99999999999999999852 123333332 12346677666655443
No 61
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=31.28 E-value=67 Score=20.66 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=18.4
Q ss_pred eccChhhHH---HHHHHHhcCC-CceeEEEEcCC
Q 043718 13 DLQCSKCYK---KVKKVLSKFP-QIQDQIYDEKQ 42 (228)
Q Consensus 13 ~M~C~gCak---KIkKaL~kl~-GV~sV~vD~k~ 42 (228)
.-.|..|.+ .++++...+. +|.-+.+|.++
T Consensus 11 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 11 SPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp CCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred CCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 777998854 3445445555 56666666543
No 62
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=30.87 E-value=1.1e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=39.4
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHh
Q 043718 9 VLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCK 64 (228)
Q Consensus 9 vLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK 64 (228)
+|-| +|.=.--...|++.+..+ +|.++.+|...+-..|+-. +.+....+|...
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~--~~~~a~~Ai~~l 60 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLL--NGEQAQNAIQMF 60 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCS--CHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEEC--CHHHHHHHHHHh
Confidence 3455 666666688999999999 9999999977777777543 666666677643
No 63
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=30.08 E-value=20 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=32.5
Q ss_pred cCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCC
Q 043718 29 KFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDG 67 (228)
Q Consensus 29 kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK 67 (228)
.+.||.-+++|.+.+.+.+++. ++|.+.+.+|....|.
T Consensus 95 ~v~Gv~v~~~~~dGkI~~~~~~-~~P~~~~~~~~~~~~~ 132 (143)
T 3mso_A 95 ELKGIDMIRFDDDGRIVDFEVM-VRPMSGLQALGEEMGR 132 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEE-EESHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCcEEEEEEE-ECcHHHHHHHHHHHHH
Confidence 6788999999988889999988 8999999999877663
No 64
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=29.03 E-value=1.1e+02 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.1
Q ss_pred hhHHHHHHHHhcCC
Q 043718 18 KCYKKVKKVLSKFP 31 (228)
Q Consensus 18 gCakKIkKaL~kl~ 31 (228)
|=-.+|.++|.+..
T Consensus 17 G~L~~I~~~la~~~ 30 (88)
T 2ko1_A 17 GMTNQITGVISKFD 30 (88)
T ss_dssp THHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHCC
Confidence 44455555555543
No 65
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=28.64 E-value=21 Score=28.79 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=33.0
Q ss_pred cCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCC
Q 043718 29 KFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDG 67 (228)
Q Consensus 29 kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK 67 (228)
.+.||.-+++|.+...+.+.+. ++|.+.+.+|..+.|.
T Consensus 102 ~v~gvd~~~fdedGkI~e~~vm-~rP~k~l~al~~~m~~ 139 (155)
T 3flj_A 102 DAVGVDLITLNEGGLIQDFEVV-MRPYKTVGALRDAMNA 139 (155)
T ss_dssp EEEEEEEEEECTTSSEEEEEEE-EECHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCCEEEEEEE-EChHHHHHHHHHHHHH
Confidence 5678999999999999999988 8999999999887663
No 66
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=27.86 E-value=13 Score=32.30 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 043718 113 KPKNKEPA 120 (228)
Q Consensus 113 kpkek~k~ 120 (228)
|||.|+|.
T Consensus 85 ~pkpkp~~ 92 (229)
T 2grx_C 85 KPKPKPKP 92 (229)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 44433333
No 67
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=27.08 E-value=1.2e+02 Score=23.65 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=28.9
Q ss_pred ceEEEEEE-eccChhhHHHHHHHHh----cC-CCceeEEEEcCCCEEEEEee
Q 043718 5 VTTMVLKV-DLQCSKCYKKVKKVLS----KF-PQIQDQIYDEKQNKVTIKVV 50 (228)
Q Consensus 5 ~~tvvLKV-~M~C~gCakKIkKaL~----kl-~GV~sV~vD~k~~kVtV~G~ 50 (228)
+.+-+|.+ ..+ +..+.+.|. .+ ..--+|.+|..+|.++|+|+
T Consensus 105 ~~~~v~~L~y~~----a~~~~~~l~~~~~~l~~~~g~v~~d~~tN~liv~~~ 152 (175)
T 2y3m_A 105 LNTATIKLHFAK----ASEVMKSLTGGSGSLLSPNGSITFDDRSNLLLIQDE 152 (175)
T ss_dssp CEEEEEECSSSC----HHHHHHHHHCSSSCSSCTTCEEEEETTTTEEEEEEC
T ss_pred cEEEEEEEeCCC----HHHHHHHHhhCcccccCCCceEEEECCCCEEEEEcC
Confidence 44555666 332 566777776 33 22348999999999999997
No 68
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=26.84 E-value=1.4e+02 Score=19.83 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcC
Q 043718 20 YKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGD 66 (228)
Q Consensus 20 akKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~g 66 (228)
...+.++|.++++|..+..=..+.-+.+....-|.+.|-+.|..+..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHHHHhc
Confidence 47899999999999988655433334443332477777766654443
No 69
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=26.25 E-value=1.4e+02 Score=19.48 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEEEE-eccChhhHHH---HHHHHhcCCCceeEEEEcCC
Q 043718 8 MVLKV-DLQCSKCYKK---VKKVLSKFPQIQDQIYDEKQ 42 (228)
Q Consensus 8 vvLKV-~M~C~gCakK---IkKaL~kl~GV~sV~vD~k~ 42 (228)
++|.+ .-.|..|..- +.+....+.+|.-+.+|.++
T Consensus 19 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~ 57 (104)
T 2e0q_A 19 AVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDE 57 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCC
Confidence 44555 7789999754 34555556667766666543
No 70
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=26.21 E-value=93 Score=20.92 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcC
Q 043718 7 TMVLKVDLQCSKCYKKVKKVLSKFPQIQDQIYDEK 41 (228)
Q Consensus 7 tvvLKV~M~C~gCakKIkKaL~kl~GV~sV~vD~k 41 (228)
+++|-..-.|..|. +++..|..+ ||.-..+|..
T Consensus 7 ~v~ly~~~~C~~C~-~~~~~L~~~-~i~~~~~di~ 39 (92)
T 2khp_A 7 DVIIYTRPGCPYCA-RAKALLARK-GAEFNEIDAS 39 (92)
T ss_dssp CEEEEECTTCHHHH-HHHHHHHHT-TCCCEEEEST
T ss_pred cEEEEECCCChhHH-HHHHHHHHc-CCCcEEEECC
Confidence 34444467899997 467777765 6655555543
No 71
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=25.89 E-value=99 Score=23.67 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=34.6
Q ss_pred ceEEEEEEeccChhhHHHHHHHHhcCC---CceeEEEEcCCCEEEEEeeccCHHHHHHHH
Q 043718 5 VTTMVLKVDLQCSKCYKKVKKVLSKFP---QIQDQIYDEKQNKVTIKVVCCCPEKMRDKI 61 (228)
Q Consensus 5 ~~tvvLKV~M~C~gCakKIkKaL~kl~---GV~sV~vD~k~~kVtV~G~~vDPekLv~aL 61 (228)
+++-+|+++ ..=+..+.+.|..+. .--++.+|..+|++.|+|.....+.|.+.|
T Consensus 74 ~~t~~i~l~---~~~a~~l~~~L~~~~ll~~rg~v~~d~~tn~l~v~g~~~~v~~v~~~i 130 (137)
T 2y9k_A 74 MRNAVVSLR---NVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAA 130 (137)
T ss_dssp CEEEEEECS---SSCHHHHHHHHCCTTCCCSSSCEEECSSTTEEEEEECHHHHHHHHHHH
T ss_pred eEEEEEEcC---CCCHHHHHHHHHHcCCCCCCCceEECCCCCEEEEECcHHHHHHHHHHH
Confidence 345556662 223677888887663 344699999999999999733333444333
No 72
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=25.55 E-value=1.4e+02 Score=20.92 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=23.7
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCCceeEEEEcCCC
Q 043718 8 MVLKV-DLQCSKCYK---KVKKVLSKFPQIQDQIYDEKQN 43 (228)
Q Consensus 8 vvLKV-~M~C~gCak---KIkKaL~kl~GV~sV~vD~k~~ 43 (228)
++|.+ .-.|..|.. .+.++...+.+|.-+.+|.+.+
T Consensus 34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~ 73 (116)
T 3qfa_C 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDC 73 (116)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 44455 678999976 4555556667777777776543
No 73
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=25.07 E-value=58 Score=26.76 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=27.8
Q ss_pred cCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHH
Q 043718 29 KFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKIC 62 (228)
Q Consensus 29 kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~ 62 (228)
.|+||+.+.+|..+.+|+=.-.-+|-..+.+.|.
T Consensus 119 aiPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl~ 152 (154)
T 3gzb_A 119 AIPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQLA 152 (154)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEECHHHHHHHHT
T ss_pred ecCceEEEeecCCccchhhhHhHHhHHHHHHHhh
Confidence 5789999999999999998644368888887764
No 74
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.94 E-value=1.1e+02 Score=22.30 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=30.5
Q ss_pred EEEEEeccChhhHH-----HHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhc
Q 043718 8 MVLKVDLQCSKCYK-----KVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKG 65 (228)
Q Consensus 8 vvLKV~M~C~gCak-----KIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~ 65 (228)
++|-.--.|..|.. ++++.|..+ ||.-..+|+.. | ..+++.|..+.
T Consensus 10 V~vy~~~~C~~C~~~~~~~~ak~~L~~~-gi~y~~vdI~~----------~-~~~~~~l~~~~ 60 (111)
T 2ct6_A 10 IRVFIASSSGFVAIKKKQQDVVRFLEAN-KIEFEEVDITM----------S-EEQRQWMYKNV 60 (111)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHT-TCCEEEEETTT----------C-HHHHHHHHHSC
T ss_pred EEEEEcCCCCCcccchhHHHHHHHHHHc-CCCEEEEECCC----------C-HHHHHHHHHHh
Confidence 44445678999997 899999875 67666666543 2 34556666553
No 75
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.17 E-value=95 Score=25.45 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.3
Q ss_pred eEEEEcCCCEEEEEeeccCHHHHHHHHH
Q 043718 35 DQIYDEKQNKVTIKVVCCCPEKMRDKIC 62 (228)
Q Consensus 35 sV~vD~k~~kVtV~G~~vDPekLv~aL~ 62 (228)
..++|.++++++|.|. ++..+|-+.|.
T Consensus 71 ~g~id~~~~rlii~G~-~~~~~i~~~L~ 97 (157)
T 2e9h_A 71 QTQFDVKNDRYIVNGS-HEANKLQDMLD 97 (157)
T ss_dssp CEEEETTTTEEEEEBC-CCHHHHHHHHH
T ss_pred ceeecCCCCEEEEEee-eCHHHHHHHHH
Confidence 4568989999999999 99988888876
No 76
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=24.09 E-value=87 Score=28.63 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCcee--EEEEcCCCEEEEEeeccCHHHHHHHHHHhcCC
Q 043718 20 YKKVKKVLSKFPQIQD--QIYDEKQNKVTIKVVCCCPEKMRDKICCKGDG 67 (228)
Q Consensus 20 akKIkKaL~kl~GV~s--V~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK 67 (228)
..+|.+++++.+||.- +..|.+.|+..++-. -+++.|.+++..-.+.
T Consensus 19 Ie~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~v-g~pe~v~eaa~~~~~~ 67 (325)
T 1qd1_A 19 IDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFV-GRPEDVVEGALNAARA 67 (325)
T ss_dssp HHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEc-cChHHHHHHHHHHHHH
Confidence 4678888888999554 456678888777644 3688888887765553
No 77
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=23.69 E-value=2.6e+02 Score=22.56 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=34.1
Q ss_pred ceEEEEEE--ec-cChhhHHHHHHHHhcCCCceeEEEE---------------cCCCEEEEEeeccCHHHHHHHHH
Q 043718 5 VTTMVLKV--DL-QCSKCYKKVKKVLSKFPQIQDQIYD---------------EKQNKVTIKVVCCCPEKMRDKIC 62 (228)
Q Consensus 5 ~~tvvLKV--~M-~C~gCakKIkKaL~kl~GV~sV~vD---------------~k~~kVtV~G~~vDPekLv~aL~ 62 (228)
|+++.|.+ || +-..--+...++|..+.|+..+.+. +-+.-|.|+.. +++..|++.|+
T Consensus 1 M~~~~i~LGSNlGd~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~~q~~FlN~v~~~~T~-l~p~~LL~~l~ 75 (159)
T 2qx0_A 1 MIRVYIALGSNLAMPLQQVSAAREALAHLPRSRLVACSPLYRTKPLGPQDQPDFLNAVVALDTS-LPPEQLLDHTQ 75 (159)
T ss_dssp CEEEEEEEEECSSSCHHHHHHHHHHHHTCTTEEEEEECCCEEECCCSSSCCCCEEEEEEEEEEC-SCHHHHHHHHH
T ss_pred CcEEEEEEeCchhhHHHHHHHHHHHHhcCCCCceEEecCcEEeCCCCCCCCcccceEEEEEeeC-CCHHHHHHHHH
Confidence 45677777 66 4445555555666666775544332 22334555555 89998887765
No 78
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.95 E-value=1.7e+02 Score=19.24 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHH
Q 043718 8 MVLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICC 63 (228)
Q Consensus 8 vvLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~k 63 (228)
.+|-| +|.=.--...|++.++.+..|.++.+....+...|+-. +.+....+|..
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~--~~~~A~~a~~~ 67 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA--TRQAAEVAAEK 67 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEES--SHHHHHHHHHT
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEEC--CHHHHHHHHHH
Confidence 45666 88878888999999999999999999888888888653 66777777763
No 79
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.02 E-value=73 Score=24.09 Aligned_cols=27 Identities=15% Similarity=-0.025 Sum_probs=21.1
Q ss_pred cCCCEEEEEeecc---CHHHHHHHHHHhcCC
Q 043718 40 EKQNKVTIKVVCC---CPEKMRDKICCKGDG 67 (228)
Q Consensus 40 ~k~~kVtV~G~~v---DPekLv~aL~kK~gK 67 (228)
+...+|.|+|+ + +.+.+.+.|...+|+
T Consensus 33 l~G~~~v~TG~-l~~~~R~e~~~~i~~~Gg~ 62 (109)
T 2k6g_A 33 LEGLIFVITGV-LESIERDEAKSLIERYGGK 62 (109)
T ss_dssp TTTCEEEEESB-CSSCCHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeee-CCCCCHHHHHHHHHHcCCE
Confidence 57788888887 5 578888888877775
No 80
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=21.87 E-value=1.9e+02 Score=19.96 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHh
Q 043718 20 YKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCK 64 (228)
Q Consensus 20 akKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK 64 (228)
...+.++|.++++|..+..=..+.-+.+....-|.+.|.+.|.++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l~~~ 59 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVVTQG 59 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHCCCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHHHHHHh
Confidence 588999999999999886544333333332214667776665433
No 81
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=21.81 E-value=1.8e+02 Score=19.44 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCC-ceeEEEEcCC
Q 043718 8 MVLKV-DLQCSKCYK---KVKKVLSKFPQ-IQDQIYDEKQ 42 (228)
Q Consensus 8 vvLKV-~M~C~gCak---KIkKaL~kl~G-V~sV~vD~k~ 42 (228)
++|.. .-.|..|.. .+.+....+.+ |.-+.+|.++
T Consensus 25 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~ 64 (111)
T 3gnj_A 25 CLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE 64 (111)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc
Confidence 34444 778999976 44555555654 6666666543
No 82
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=21.71 E-value=35 Score=26.74 Aligned_cols=38 Identities=5% Similarity=0.077 Sum_probs=32.0
Q ss_pred cCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHHhcCC
Q 043718 29 KFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICCKGDG 67 (228)
Q Consensus 29 kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~kK~gK 67 (228)
.+.||.-+++|.+.+.+.+... .+|.+.+.+|..+.|.
T Consensus 104 ~v~Gvdvl~~d~dGkI~~~~~~-~~P~~~~~~l~~~m~~ 141 (148)
T 3f8x_A 104 LLTGVDLIEFNDAGKITDLVVM-MRPASVVIDLSVEVGK 141 (148)
T ss_dssp EEEEEEEEEECTTSCEEEEEEE-EECHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCcEEEEEEE-EchHHHHHHHHHHHHH
Confidence 4678999999988888899887 8999999999877663
No 83
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.31 E-value=2e+02 Score=19.60 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=40.5
Q ss_pred EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEEeeccCHHHHHHHHHH
Q 043718 9 VLKV-DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIKVVCCCPEKMRDKICC 63 (228)
Q Consensus 9 vLKV-~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~G~~vDPekLv~aL~k 63 (228)
+|-| +|.=.--...|++.+..+..|.++.+....+...|+-. +.+....+|..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~--~~~~a~~a~~~ 70 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLE--TRTLAEIAKVE 70 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECS--SSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEEC--CHHHHHHHHHH
Confidence 4556 77777778899999999999999999988888888743 44555555543
No 84
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.45 E-value=1.7e+02 Score=21.68 Aligned_cols=20 Identities=15% Similarity=0.639 Sum_probs=14.0
Q ss_pred eccChhhHH---HHHHHHhcCCC
Q 043718 13 DLQCSKCYK---KVKKVLSKFPQ 32 (228)
Q Consensus 13 ~M~C~gCak---KIkKaL~kl~G 32 (228)
+..|.+|++ .+.+.+.++..
T Consensus 30 dy~Cp~C~~~~~~~~~l~~~~~~ 52 (184)
T 4dvc_A 30 SFYCPHCNTFEPIIAQLKQQLPE 52 (184)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSCT
T ss_pred CCCCHhHHHHhHHHHHHHhhcCC
Confidence 999999975 35555555543
No 85
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=20.31 E-value=73 Score=22.46 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=17.9
Q ss_pred cCCCc--eeEEEEcCCCEEEEEee
Q 043718 29 KFPQI--QDQIYDEKQNKVTIKVV 50 (228)
Q Consensus 29 kl~GV--~sV~vD~k~~kVtV~G~ 50 (228)
.|+|+ +++.|.+.++.++|.|.
T Consensus 14 dlPG~~~edi~V~v~~~~L~I~g~ 37 (85)
T 3q9p_A 14 DVNHFAPDELTVKTKDGVVEITGK 37 (85)
T ss_dssp ECTTTCCSEEEEEEETTEEEEEEE
T ss_pred ECCCCChHHEEEEEECCEEEEEEE
Confidence 45675 57888889999999997
No 86
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=20.18 E-value=2.6e+02 Score=20.47 Aligned_cols=59 Identities=7% Similarity=0.035 Sum_probs=36.5
Q ss_pred eEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCEEEEE--eeccCHHHHHHHHHHhc
Q 043718 6 TTMVLKV--DLQCSKCYKKVKKVLSKFPQIQDQIYDEKQNKVTIK--VVCCCPEKMRDKICCKG 65 (228)
Q Consensus 6 ~tvvLKV--~M~C~gCakKIkKaL~kl~GV~sV~vD~k~~kVtV~--G~~vDPekLv~aL~kK~ 65 (228)
..+.|.| ..+=-+=..-+.+...+| |++...-|..+++|.|. |..-+.+.++++|+..+
T Consensus 11 ~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g 73 (102)
T 1urr_A 11 FALDFEIFGRVQGVFFRKHTSHEAKRL-GVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR 73 (102)
T ss_dssp EEEEEEEEEECSSSSHHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC
T ss_pred EEEEEEEEEeECCcChhHHHHHHHHHh-CCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC
Confidence 3455556 444445555555555554 78888899999987775 54223456777776433
No 87
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=20.13 E-value=1.6e+02 Score=18.53 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.4
Q ss_pred EeccChhhHHHHHHHHhcCCCceeEEEEcC
Q 043718 12 VDLQCSKCYKKVKKVLSKFPQIQDQIYDEK 41 (228)
Q Consensus 12 V~M~C~gCakKIkKaL~kl~GV~sV~vD~k 41 (228)
..-.|..|.+ ++..|..+ ||.-..+|.+
T Consensus 7 ~~~~C~~C~~-~~~~l~~~-~i~~~~~di~ 34 (75)
T 1r7h_A 7 TKPACVQCTA-TKKALDRA-GLAYNTVDIS 34 (75)
T ss_dssp ECTTCHHHHH-HHHHHHHT-TCCCEEEETT
T ss_pred eCCCChHHHH-HHHHHHHc-CCCcEEEECC
Confidence 3567999975 66677765 6665555543
No 88
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=20.06 E-value=2e+02 Score=18.98 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=20.2
Q ss_pred EEEEE-eccChhhHH---HHHHHHhcCCC-ceeEEEEcC
Q 043718 8 MVLKV-DLQCSKCYK---KVKKVLSKFPQ-IQDQIYDEK 41 (228)
Q Consensus 8 vvLKV-~M~C~gCak---KIkKaL~kl~G-V~sV~vD~k 41 (228)
++|.+ .-.|..|.. .+.++...+.+ |.-+.+|.+
T Consensus 22 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~ 60 (106)
T 3die_A 22 QLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVD 60 (106)
T ss_dssp EEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECC
Confidence 34444 778999976 34455555555 555555543
Done!