Query 043725
Match_columns 150
No_of_seqs 132 out of 686
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 48.5 35 0.0012 23.6 5.1 63 41-106 5-72 (107)
2 1und_A Advillin, P92; actin bi 47.3 4.5 0.00015 24.2 0.2 19 60-78 1-19 (37)
3 2vkp_A BTB/POZ domain-containi 44.3 32 0.0011 22.6 4.3 59 44-106 11-74 (109)
4 1vd2_A Protein kinase C, IOTA 43.6 30 0.001 24.1 4.1 58 47-109 12-81 (89)
5 2vpk_A Myoneurin; transcriptio 42.2 32 0.0011 23.1 4.1 54 44-106 25-83 (116)
6 2al3_A TUG long isoform; TUG U 38.1 29 0.001 24.4 3.4 40 41-82 8-47 (90)
7 3ga1_A Nucleus accumbens-assoc 37.9 48 0.0017 22.7 4.5 54 44-106 36-93 (129)
8 1buo_A POZ domain, protein (pr 34.3 1.1E+02 0.0036 20.6 6.8 82 4-106 2-86 (121)
9 2xko_C PIPX, global nitrogen r 33.5 5.7 0.00019 28.3 -1.0 12 59-70 4-15 (89)
10 2cu1_A Mitogen-activated prote 32.2 82 0.0028 22.8 5.0 62 52-115 17-85 (103)
11 1r29_A B-cell lymphoma 6 prote 30.8 39 0.0013 23.0 3.1 57 44-106 32-92 (127)
12 1s1g_A Potassium voltage-gated 29.8 24 0.00083 25.5 1.8 63 40-106 11-75 (124)
13 1w8x_N Protein P31, protein C, 29.8 20 0.00067 26.6 1.3 28 40-68 86-123 (126)
14 1yu8_X Villin; alpha helix, 3- 25.5 17 0.00057 24.3 0.3 20 59-78 30-49 (67)
15 1y6i_A Mg-chelatase cofactor G 25.3 10 0.00035 30.9 -1.0 30 37-68 200-229 (233)
16 2if5_A Zinc finger and BTB dom 24.3 1E+02 0.0035 20.5 4.2 58 44-106 28-88 (120)
17 1z3x_A Putative cytidyltransfe 23.1 8.2 0.00028 31.7 -2.0 30 37-68 208-237 (238)
18 1ujs_A Actin-binding LIM prote 22.8 20 0.00069 25.2 0.3 21 59-79 45-65 (88)
19 1qzp_A Dematin; villin headpie 22.8 15 0.0005 24.6 -0.4 20 59-78 31-50 (68)
20 3n5b_B ASR0485 protein; PII, P 22.6 12 0.0004 27.6 -1.0 27 36-70 12-38 (112)
21 2q81_A MIZ-1 protein; BTB/POZ 21.3 1.3E+02 0.0043 20.2 4.2 53 44-106 30-85 (119)
22 3b84_A Zinc finger and BTB dom 21.1 1E+02 0.0035 20.7 3.7 54 44-106 27-83 (119)
23 2k6m_S Supervillin; SVHP, HP, 21.0 18 0.00063 24.1 -0.2 21 59-79 30-50 (67)
24 2nz0_B Potassium voltage-gated 20.5 32 0.0011 25.5 0.9 63 40-106 33-97 (140)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=48.52 E-value=35 Score=23.55 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=44.7
Q ss_pred CCcEEEEecccceeeeeeccccC-cH--HHHHHHHHHHHhcC--CCCCCCeeecCCHHHHHHHHHHHhcCC
Q 043725 41 AGYVAVCVGTSCRRFVVRATYLN-HP--VFKKLLVQAEEEYG--FTNQGPLAIPCDESLFEEAIRFISRSE 106 (150)
Q Consensus 41 kG~~aVYVG~e~~RfvVp~~yLn-hP--~F~~LL~~aeEEfG--f~~~G~L~IPC~~~~Fe~ll~~i~~~~ 106 (150)
...+.+-|| .++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.+...|++||..++.+.
T Consensus 5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 346777898 589999887664 34 555554321 1232 335789999999999999999998754
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=47.33 E-value=4.5 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=17.2
Q ss_pred cccCcHHHHHHHHHHHHhc
Q 043725 60 TYLNHPVFKKLLVQAEEEY 78 (150)
Q Consensus 60 ~yLnhP~F~~LL~~aeEEf 78 (150)
.||+.-.|++++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=44.33 E-value=32 Score=22.57 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=41.6
Q ss_pred EEEEecc--cceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGT--SCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAIP-CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~--e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.||. +.++|-+.-..| ..|.|+.++...-.|-. ..|.+| .+.+.|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~----~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK----SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C----CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC----CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 5566764 247888888877 58999999975433321 578887 69999999999998754
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.56 E-value=30 Score=24.06 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred EecccceeeeeeccccCcHHHHHHHHHHHHhcCCCCCCCee------------ecCCHHHHHHHHHHHhcCCCcc
Q 043725 47 CVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLA------------IPCDESLFEEAIRFISRSESGH 109 (150)
Q Consensus 47 YVG~e~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~~~G~L~------------IPC~~~~Fe~ll~~i~~~~~~~ 109 (150)
|-..+-.|+.||. ...|++|.++-.+-|++..+.+++ |.=+ ..++..+.+.+.+.+.+
T Consensus 12 ~~~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd-~EL~eAl~l~~~n~~~~ 81 (89)
T 1vd2_A 12 YYRGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQ-LELEEAFRLYELNKDSE 81 (89)
T ss_dssp ESSSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSH-HHHHHHHHHHHHTSCCC
T ss_pred EeCCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCH-HHHHHHHHHHHccCCCC
Confidence 3344677888887 468999999999999986444444 4433 34455556555544443
No 5
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=42.23 E-value=32 Score=23.06 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=41.6
Q ss_pred EEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeeec---CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAIP---CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP---C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..| ..|.|+.++... .+..+.|+ .+...|+.++..+-.+.
T Consensus 25 v~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 25 CTIVIG--EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEEEC--CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 556675 46777777776 579999988654 35678888 79999999999998764
No 6
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=38.09 E-value=29 Score=24.36 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCcEEEEecccceeeeeeccccCcHHHHHHHHHHHHhcCCCC
Q 043725 41 AGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN 82 (150)
Q Consensus 41 kG~~aVYVG~e~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~~ 82 (150)
.|--++++....+|+.|++. ..-.+.++|++|-+.|||+.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp --CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred CccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 34445555567899999984 34467889999999999974
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=37.88 E-value=48 Score=22.70 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=41.6
Q ss_pred EEEEecccceeeeeeccccC--cHHHHHHHHHHHHhcCCCCCCCeeec--CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYLN--HPVFKKLLVQAEEEYGFTNQGPLAIP--CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yLn--hP~F~~LL~~aeEEfGf~~~G~L~IP--C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..|. .|.|+.++... ....|.|| .+.+.|+.++..+-.+.
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 566675 467777766664 69999998775 45689997 89999999999997653
No 8
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=34.34 E-value=1.1e+02 Score=20.65 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred CCCcccchhhHHHHHHHHHHHhhhhhccCCCCCCCCCCCcEEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCC
Q 043725 4 GFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFT 81 (150)
Q Consensus 4 ~~~k~~ki~~~~rLkq~~kkW~~~a~~~~~~~~~~vpkG~~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~ 81 (150)
|+-+.........+.+-+.+....... --+.+.|| .++|-+.-..| ..|.|+.++..
T Consensus 2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~-----------~Dv~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~-------- 60 (121)
T 1buo_A 2 GMIQLQNPSHPTGLLCKANQMRLAGTL-----------CDVVIMVD--SQEFHAHRTVLACTSKMFEILFHR-------- 60 (121)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTT-----------CCEEEEES--SCEEEECHHHHHHHCHHHHHHTTS--------
T ss_pred CceeccCcchHHHHHHHHHHHHhcCCC-----------CCEEEEEC--CEEEehhHHHHhhcCHHHHHHHcC--------
Confidence 444455555555666655555443221 12556675 36777776665 57999998853
Q ss_pred CCCCeeec-CCHHHHHHHHHHHhcCC
Q 043725 82 NQGPLAIP-CDESLFEEAIRFISRSE 106 (150)
Q Consensus 82 ~~G~L~IP-C~~~~Fe~ll~~i~~~~ 106 (150)
....+.|+ .+.+.|+.++..+-.+.
T Consensus 61 ~~~~i~l~~~~~~~f~~ll~~~Ytg~ 86 (121)
T 1buo_A 61 NSQHYTLDFLSPKTFQQILEYAYTAT 86 (121)
T ss_dssp CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred CCcEEEeCCCCHHHHHHHHHhhcCCC
Confidence 24578887 78999999999998765
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=33.45 E-value=5.7 Score=28.27 Aligned_cols=12 Identities=58% Similarity=1.041 Sum_probs=8.8
Q ss_pred ccccCcHHHHHH
Q 043725 59 ATYLNHPVFKKL 70 (150)
Q Consensus 59 ~~yLnhP~F~~L 70 (150)
-.|||||.|.-|
T Consensus 4 E~YLNHPtFGlL 15 (89)
T 2xko_C 4 ENYLNHPTFGLL 15 (89)
T ss_dssp CCEEEETTTEEE
T ss_pred cccccCCccchh
Confidence 359999988544
No 10
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.20 E-value=82 Score=22.79 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=45.2
Q ss_pred ceeeeeeccccCcHHHHHHHHHHHHhcCCC-----CCCCeeecC-CHHHHHHHHHHHhcCCCccccc-ccc
Q 043725 52 CRRFVVRATYLNHPVFKKLLVQAEEEYGFT-----NQGPLAIPC-DESLFEEAIRFISRSESGHSAR-FVN 115 (150)
Q Consensus 52 ~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~-----~~G~L~IPC-~~~~Fe~ll~~i~~~~~~~~~r-~~~ 115 (150)
.+|++|+.. .--.|.+|..++.+-||.. ++--+.||= ..+....++.++++.....+.| +++
T Consensus 17 GEkRIi~f~--RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~ 85 (103)
T 2cu1_A 17 GEKRILQFP--RPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 85 (103)
T ss_dssp TEEEEEEEE--SSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred CeEEEEecc--CCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCCcccceEEEEe
Confidence 456666543 1225999999999999964 355677774 6778899999999998777777 443
No 11
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=30.81 E-value=39 Score=22.97 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=43.0
Q ss_pred EEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeee-c-CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAI-P-CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~I-P-C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..| ..|.|+.++...-.| ....|.| + .+.+.|+.++..|-.+.
T Consensus 32 v~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 32 VVIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 556675 36777777777 689999999754444 3568999 4 68999999999998654
No 12
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=29.82 E-value=24 Score=25.49 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=43.3
Q ss_pred CCCcEEEEecccceeeeeeccccC-cHHHHHHHHHHHHhcCC-CCCCCeeecCCHHHHHHHHHHHhcCC
Q 043725 40 PAGYVAVCVGTSCRRFVVRATYLN-HPVFKKLLVQAEEEYGF-TNQGPLAIPCDESLFEEAIRFISRSE 106 (150)
Q Consensus 40 pkG~~aVYVG~e~~RfvVp~~yLn-hP~F~~LL~~aeEEfGf-~~~G~L~IPC~~~~Fe~ll~~i~~~~ 106 (150)
....+.+-|| .+||.+..+-|. +|. .+|..++...-+ +.+|.+-|-.+...|++||..++.+.
T Consensus 11 ~~~~V~LNVG--G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~ 75 (124)
T 1s1g_A 11 QDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 75 (124)
T ss_dssp -CCEEEEEET--TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeC--CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCC
Confidence 4566777797 689998876553 332 233333333233 34799999999999999999999864
No 13
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=29.76 E-value=20 Score=26.56 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=17.6
Q ss_pred CCCcEEEEecccceeee----------eeccccCcHHHH
Q 043725 40 PAGYVAVCVGTSCRRFV----------VRATYLNHPVFK 68 (150)
Q Consensus 40 pkG~~aVYVG~e~~Rfv----------Vp~~yLnhP~F~ 68 (150)
..|||||.| ..+-+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~-~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLV-PGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEE-CCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeec-cchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 479999999 3455555 688899988754
No 14
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=25.55 E-value=17 Score=24.32 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=18.6
Q ss_pred ccccCcHHHHHHHHHHHHhc
Q 043725 59 ATYLNHPVFKKLLVQAEEEY 78 (150)
Q Consensus 59 ~~yLnhP~F~~LL~~aeEEf 78 (150)
-.||+.-.|++++.|+.+||
T Consensus 30 E~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHH
Confidence 37999999999999999998
No 15
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.29 E-value=10 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCCCCCcEEEEecccceeeeeeccccCcHHHH
Q 043725 37 SDVPAGYVAVCVGTSCRRFVVRATYLNHPVFK 68 (150)
Q Consensus 37 ~~vpkG~~aVYVG~e~~RfvVp~~yLnhP~F~ 68 (150)
..+|+||+|+.-.--.-| +=...|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 468999999865211122 556889999984
No 16
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=24.26 E-value=1e+02 Score=20.52 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.9
Q ss_pred EEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAIP-CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..| ..|.|+.++...-.| .....|.++ .+...|+.++..+-.+.
T Consensus 28 v~l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 28 VVILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred eEEEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 556675 46777777777 479999998753222 234578888 58999999999998665
No 17
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=23.10 E-value=8.2 Score=31.66 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=20.4
Q ss_pred CCCCCCcEEEEecccceeeeeeccccCcHHHH
Q 043725 37 SDVPAGYVAVCVGTSCRRFVVRATYLNHPVFK 68 (150)
Q Consensus 37 ~~vpkG~~aVYVG~e~~RfvVp~~yLnhP~F~ 68 (150)
..+|+||+|+.-. -+=.-+=...|+||.|.
T Consensus 208 l~AP~GHLP~~~~--lrGv~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ--LRGVQVLNALLNHPAWT 237 (238)
T ss_dssp TTSCTTCCSCCCC--TTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCcc--cccHHHHHHHHcCcccc
Confidence 4689999998642 12222556889999873
No 18
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.85 E-value=20 Score=25.16 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=19.1
Q ss_pred ccccCcHHHHHHHHHHHHhcC
Q 043725 59 ATYLNHPVFKKLLVQAEEEYG 79 (150)
Q Consensus 59 ~~yLnhP~F~~LL~~aeEEfG 79 (150)
-.||+.-.|++++.|+.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999983
No 19
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=22.75 E-value=15 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=18.6
Q ss_pred ccccCcHHHHHHHHHHHHhc
Q 043725 59 ATYLNHPVFKKLLVQAEEEY 78 (150)
Q Consensus 59 ~~yLnhP~F~~LL~~aeEEf 78 (150)
-.||+.-.|++++.|+.+||
T Consensus 31 E~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHH
Confidence 47999999999999999998
No 20
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=22.61 E-value=12 Score=27.62 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=9.4
Q ss_pred CCCCCCCcEEEEecccceeeeeeccccCcHHHHHH
Q 043725 36 PSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKL 70 (150)
Q Consensus 36 ~~~vpkG~~aVYVG~e~~RfvVp~~yLnhP~F~~L 70 (150)
+.-||+|-.--=+. +..|||||.|.-|
T Consensus 12 ~~~~~~~~~~~~ms--------~E~YLNHPTFGLL 38 (112)
T 3n5b_B 12 SGLVPRGSHMNPEN--------SETYINHPTWGLL 38 (112)
T ss_dssp ----------------------CCCEEEETTTEEE
T ss_pred CCcccCCccCCCcc--------hhhhccCCccchh
Confidence 34567765433222 2249999999655
No 21
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=21.31 E-value=1.3e+02 Score=20.23 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=40.3
Q ss_pred EEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeeecC-CHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAIPC-DESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IPC-~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..| ..|.|+.++.. +...+.++- +.+.|+.++..+-.+.
T Consensus 30 v~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 30 CTFVVD--GVHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred eEEEEC--CEEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 556675 36788877777 47999999975 245677775 7899999999998765
No 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=21.10 E-value=1e+02 Score=20.74 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=40.3
Q ss_pred EEEEecccceeeeeecccc--CcHHHHHHHHHHHHhcCCCCCCCeeec-CCHHHHHHHHHHHhcCC
Q 043725 44 VAVCVGTSCRRFVVRATYL--NHPVFKKLLVQAEEEYGFTNQGPLAIP-CDESLFEEAIRFISRSE 106 (150)
Q Consensus 44 ~aVYVG~e~~RfvVp~~yL--nhP~F~~LL~~aeEEfGf~~~G~L~IP-C~~~~Fe~ll~~i~~~~ 106 (150)
+.+.|| .++|-+.-..| ..|.|+.++... . +..|.|| .+.+.|+.++..+-.+.
T Consensus 27 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 27 ATLDVG--GLVFKAHWSVLACCSHFFQSLYGDG-----S--GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTT-----T--CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred eEEEEC--CEEEEeeHHHHhhcCHHHHHHHCCC-----C--CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 556675 36777777666 479999888652 2 5689998 57899999999998654
No 23
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=21.02 E-value=18 Score=24.06 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.2
Q ss_pred ccccCcHHHHHHHHHHHHhcC
Q 043725 59 ATYLNHPVFKKLLVQAEEEYG 79 (150)
Q Consensus 59 ~~yLnhP~F~~LL~~aeEEfG 79 (150)
-.||+.-.|++++.|+.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999983
No 24
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=20.46 E-value=32 Score=25.46 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=43.7
Q ss_pred CCCcEEEEecccceeeeeecccc-CcHHHHHHHHHHHHhcCC-CCCCCeeecCCHHHHHHHHHHHhcCC
Q 043725 40 PAGYVAVCVGTSCRRFVVRATYL-NHPVFKKLLVQAEEEYGF-TNQGPLAIPCDESLFEEAIRFISRSE 106 (150)
Q Consensus 40 pkG~~aVYVG~e~~RfvVp~~yL-nhP~F~~LL~~aeEEfGf-~~~G~L~IPC~~~~Fe~ll~~i~~~~ 106 (150)
....+.+-|| .+||.+..+-| ++|. .+|..+....-+ +.+|.+-|-.|...|++||..++.+.
T Consensus 33 ~~~~V~LNVG--G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~ 97 (140)
T 2nz0_B 33 QDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGK 97 (140)
T ss_dssp CCCEEEEEET--TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEEEC--CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCC
Confidence 4567777798 68999887655 2332 233333333333 35799999999999999999999764
Done!