BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043726
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 69 FTNGRTVADIIGDKMGLPRPPAFLDPSLTEDV-ILENGVNYASGG--GGILNETGGYFIQ 125
F N T A G K+ + P P++ D ENG Y +G GG N+T GYF
Sbjct: 118 FQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHH 177
Query: 126 R----FSLYKQIDLFRGTQDLIKSKIDNEAAEKFFQEA 159
FS + +++ T DL +N +K+F++A
Sbjct: 178 NGGSDFSSLEN-GIYKNTYDLADFNHNNATIDKYFKDA 214
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 127/342 (37%), Gaps = 84/342 (24%)
Query: 30 IFGDSLSDVGNNRYLTRSLANANLPWYGIDFGNGMPNGRFTN--------------GRTV 75
+FGDSLSD G + G RFTN G T
Sbjct: 20 VFGDSLSDAGQ---------------FPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTA 64
Query: 76 ADIIGDKMGL-PRPPAFLDPSLTEDVILENGVNYASGGGGILNETGGYFIQRFSLYKQID 134
++G+++G+ P A + + +G N+A GGY + +Y I
Sbjct: 65 PMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWA---------VGGYRTDQ--IYDSIT 113
Query: 135 LFRGT-----QDLIKSKIDNEAAEKFFQ------EARYVVALGSNDFINNYLTGVYSDSW 183
G+ L++S+ D ++ Q A Y + G NDF+ +
Sbjct: 114 AANGSLIERDNTLLRSR-DGYLVDRARQGLGADPNALYYITGGGNDFLQGRI-------- 164
Query: 184 KYNDATFIDYLMETLEDQLKMLHGMGARQLMVFGLAPMGCIPLQRVLSTSGG-CQEKTNK 242
ND L D ++ L GAR ++V+ L +G P +T GG Q ++
Sbjct: 165 -LNDVQ-AQQAAGRLVDSVQALQQAGARYIVVWLLPDLGLTP-----ATFGGPLQPFASQ 217
Query: 243 LAVSFNAAASKLLDKMSSTLANASYTFGDNYDVVNDVITNPSKFGF---ENSDSPCCSFG 299
L+ +FNA + L + + + + ++ + + NP+ FG +N C S
Sbjct: 218 LSGTFNAELTAQLSQAGANVIPLNIPL-----LLKEGMANPASFGLAADQNLIGTCFSGN 272
Query: 300 RIRPALTCIPASIL---CKDRSKYVFWDEYHPSDAANELVAN 338
T P + D SK +F D HP+ L+A+
Sbjct: 273 ----GCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIAD 310
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 69 FTNGRTVADIIGDKMGLPRPPAFLDPSLTEDV-ILENGVNYASGG--GGILNETGGYFIQ 125
F N T A G K+ + P P++ D ENG Y +G GG N+T GYF
Sbjct: 118 FQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHH 177
Query: 126 R----FSLYKQIDLFRGTQDLIKSKIDNEAAEKFFQEA 159
FS + +++ DL +N +K+F++A
Sbjct: 178 NGGSDFSSLEN-GIYKNLYDLADFNHNNATIDKYFKDA 214
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 69 FTNGRTVADIIGDKMGLPRPPAFLDPSLTEDV-ILENGVNYASGG--GGILNETGGYFIQ 125
F N T A G K+ + P P++ D ENG Y +G GG N+T GYF
Sbjct: 118 FQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHH 177
Query: 126 R----FSLYKQIDLFRGTQDLIKSKIDNEAAEKFFQEA 159
FS + +++ DL +N +K+F++A
Sbjct: 178 NGGSDFSSLEN-GIYKNLYDLADFNHNNATIDKYFKDA 214
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 69 FTNGRTVADIIGDKMGLPRPPAFLDPSLTEDV-ILENGVNYASGG--GGILNETGGYFIQ 125
F N T A G K+ + P P++ D ENG Y +G GG N+T GYF
Sbjct: 118 FQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVGGYTNDTNGYFHH 177
Query: 126 R----FSLYKQIDLFRGTQDLIKSKIDNEAAEKFFQEA 159
FS + +++ DL +N +K+F++A
Sbjct: 178 NGGSDFSSLEN-GIYKNLYDLADFNHNNATIDKYFKDA 214
>pdb|2OQC|A Chain A, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
pdb|2OQC|B Chain B, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
Length = 327
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 65 PNGRFTNGRTVADIIGDKMGLPRPPAFLDPSLTEDVILENGVNYASGGGGILNETGGYFI 124
P T G T A I M +P+ + E+ ++Y + NETG Y+
Sbjct: 239 PAADETKGVTAAFQILANMTIPKGAVITE---------EDEIHYTQYTSVMCNETGNYYF 289
Query: 125 QRF--SLYKQIDLFRGTQDLIKSKIDNEAAEKFFQE 158
+ ++++LF D ++ K+ + AE+ E
Sbjct: 290 HHYDNRQIQKVNLFHEDLDCLEPKVFSAKAEESIHE 325
>pdb|3E1K|A Chain A, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|C Chain C, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|E Chain E, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|G Chain G, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|I Chain I, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|K Chain K, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|M Chain M, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|O Chain O, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
Length = 465
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 48 LANANLPWYGIDFGNGMPNGRFTNGRTVADIIGDKMGLPRPPAFLDPSLTEDVILE--NG 105
++N L +YGI GNG NG NG A I DK + + P+ + E+ +E +
Sbjct: 315 ISNLVLYFYGIKNGNGSSNGTDNNG---AAAIKDKEKVTKSPSPSTGTSEEEQTMEVFHL 371
Query: 106 VNYASGGGGIL 116
NY S G IL
Sbjct: 372 RNYNSVVGNIL 382
>pdb|2NVW|A Chain A, Crystal Sctucture Of Transcriptional Regulator Gal80p From
Kluyveromymes Lactis
pdb|2NVW|B Chain B, Crystal Sctucture Of Transcriptional Regulator Gal80p From
Kluyveromymes Lactis
Length = 479
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 48 LANANLPWYGIDFGNGMPNGRFTNGRTVADIIGDKMGLPRPPAFLDPSLTEDVILE--NG 105
++N L +YGI GNG NG NG A I DK + + P+ + E+ +E +
Sbjct: 337 ISNLVLYFYGIKNGNGSSNGTDNNG---AAAIKDKEKVTKSPSPSTGTSEEEQTMEVFHL 393
Query: 106 VNYASGGGGIL 116
NY S G IL
Sbjct: 394 RNYNSVVGNIL 404
>pdb|3F41|A Chain A, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
pdb|3F41|B Chain B, Structure Of The Tandemly Repeated Protein Tyrosine
Phosphatase Like Phytase From Mitsuokella Multacida
Length = 629
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 42 RYLTRSLANAN-LPWYGI-DFGN---------GMPNGRFTNGR----TVADIIGDKMGLP 86
R T + N N + WYG+ D+GN N R R VA++ DKM +
Sbjct: 419 RQETHGVFNGNAVSWYGLRDWGNLGKNKAEVLKDENSRLNAARGKSLIVAELDKDKMPID 478
Query: 87 RPPAFLDPSLTEDVILE-NGVNY 108
P ++ +TE ++E NG++Y
Sbjct: 479 PKPVKIESVMTEQQLVEKNGLHY 501
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 31 FGDSLSDVGNNRYLTRSLANANLPWYG--IDFGNGMPNGRFTNGRTVADIIGDKMGLPRP 88
FG S S G Y R N P++G DF N + N + + D + P
Sbjct: 92 FGGSTSYHG---YWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHT---SP 144
Query: 89 PAFLDPSLTEDVILENGVNYASGG--GGILNETGGYFIQR----FSLYKQIDLFRGTQDL 142
+ DP+ E NG Y +G GG N+T GYF FS Y+ ++R DL
Sbjct: 145 ASETDPTYAE-----NGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYED-GIYRNLFDL 198
Query: 143 IKSKIDNEAAEKFFQEA 159
N + + + A
Sbjct: 199 ADLNQQNSTIDSYLKSA 215
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 31 FGDSLSDVGNNRYLTRSLANANLPWYG--IDFGNGMPNGRFTNGRTVADIIGDKMGLPRP 88
FG S S G Y R N P++G DF N + N + + D + P
Sbjct: 92 FGGSTSYHG---YWARDFKRTN-PYFGSFTDFQNLINTAHAHNIKVIIDFAPNHT---SP 144
Query: 89 PAFLDPSLTEDVILENGVNYASGG--GGILNETGGYFIQR----FSLYKQIDLFRGTQDL 142
+ DP+ E NG Y +G GG N+T GYF FS Y+ ++R DL
Sbjct: 145 ASETDPTYAE-----NGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYED-GIYRNLFDL 198
Query: 143 IKSKIDNEAAEKFFQEA 159
N + + + A
Sbjct: 199 ADLNQQNSTIDSYLKSA 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,642,120
Number of Sequences: 62578
Number of extensions: 473674
Number of successful extensions: 1071
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 19
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)