BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043727
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus
           Stearothermophilus Cect43
 pdb|3N5F|B Chain B, Crystal Structure Of L-N-Carbamoylase From Geobacillus
           Stearothermophilus Cect43
          Length = 408

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 104/268 (38%), Gaps = 10/268 (3%)

Query: 6   LGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDG 65
           L  ++++  +   G      +E + FT EE  R+    +GS  +AG  +L  + +   D 
Sbjct: 96  LAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDA 153

Query: 66  QNISFLHAARSAGHAKKHNDLSSVFLKKGSYSAFVXXXXXXXXXXXXXXXXXXXXXXXXX 125
           + IS   A + AG     + L     K G+  A+V                         
Sbjct: 154 EGISLAEAMKQAG--LDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211

Query: 126 XXXXKVDFEGNEGHAGAVLMP--NSXXXXXXXXXXXXXXXXSGSIDTVGTVGILELHSGA 183
               K   EG   HAGA  M                       +  TVGTVG L ++ G 
Sbjct: 212 LIWVKFTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARRTGTTVGTVGQLHVYPGG 271

Query: 184 INSIPSKSHLEIDIDEKR---RKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSDR 240
           IN IP +    +D+ + +   R  V + I   A TIAK R V ++  ++  + PP L   
Sbjct: 272 INVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERL-QEMPPVLCSD 330

Query: 241 SIILEAEVALKELNLTYKFMISRAYHDS 268
            +   AE A ++L     ++ S A HDS
Sbjct: 331 EVKRAAEAACQKLGYPSFWLPSGAAHDS 358


>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
          Length = 470

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 14  IVIRSGFKPRRSLEFIMFTSEEPKRYGIS 42
           ++  +GFKP++ ++F++ T+EE    GI 
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNWVGID 161


>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
 pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
 pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
          Length = 425

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 18  SGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVD 64
           SGF  ++ LE+     E P+R  ++ LG   ++    L K+L+  VD
Sbjct: 194 SGFLXKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVD 240


>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
 pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
 pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
          Length = 424

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 18  SGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVD 64
           SGF  ++ LE+     E P+R  ++ LG   ++    L K+L+  VD
Sbjct: 193 SGFLXKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVD 239


>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
           Plasmodium Falciparum
 pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
           Plasmodium Falciparum
          Length = 417

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 18  SGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVD 64
           SGF  ++ LE+     E P+R  ++ LG   ++    L K+L+  VD
Sbjct: 187 SGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVD 233


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,137,797
Number of Sequences: 62578
Number of extensions: 191682
Number of successful extensions: 413
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 5
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)