BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043727
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=1 SV=1
Length = 409
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 135/272 (49%), Gaps = 18/272 (6%)
Query: 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDG 65
L ++++ + G +E + FT EE R+ +GS +AG +L + + D
Sbjct: 96 LAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDA 153
Query: 66 QNISFLHAARSAGHAKKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAA 125
+ IS A + AG + L K G+ A+VEL IEQG +LEE G + IVT IA
Sbjct: 154 EGISLAEAMKQAG--LDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAG 211
Query: 126 SASIKVDFEGNEGHAGAVLMPNSL------AAAEVALAVEKHVLESGSIDTVGTVGILEL 179
+K EG HAGA P SL AAA++ + +E+ +G+ TVGTVG L +
Sbjct: 212 LIWVKFTIEGKAEHAGAT--PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHV 267
Query: 180 HSGAINSIPSKSHLEIDIDEKR---RKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236
+ G IN IP + +D+ + + R V + I A TIAK R V ++ ++ + PP
Sbjct: 268 YPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERL-QEMPPV 326
Query: 237 LSDRSIILEAEVALKELNLTYKFMISRAYHDS 268
L + AE A ++L ++ S A HDS
Sbjct: 327 LCSDEVKRAAEAACQKLGYPSFWLPSGAAHDS 358
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus
stearothermophilus GN=amaB PE=3 SV=2
Length = 409
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 132/272 (48%), Gaps = 18/272 (6%)
Query: 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDG 65
L ++++ + G +E + FT EE R+ +GS +AG +L + + D
Sbjct: 96 LAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDA 153
Query: 66 QNISFLHAARSAGHAKKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAA 125
+ IS A + AG + L K G+ A+VEL IEQG +LEE G + IVT IA
Sbjct: 154 EGISLAEAMKQAG--LDPDRLPQAARKPGTVKAYVELHIEQGRVLEEAGLPVGIVTGIAG 211
Query: 126 SASIKVDFEGNEGHAGAVLMPNSL------AAAEVALAVEKHVLESGSIDTVGTVGILEL 179
+K G HAGA P SL AAA++ + +E+ +G+ TVGTVG L +
Sbjct: 212 LIWVKFTIAGPAEHAGAT--PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHV 267
Query: 180 HSGAINSIPSKSHLEIDIDEKR---RKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236
+ G IN IP + +D+ + + R V + I A TIAK R V L+ ++ + P
Sbjct: 268 YPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRLTTERL-QEMAPV 326
Query: 237 LSDRSIILEAEVALKELNLTYKFMISRAYHDS 268
L + AE A K+L ++ S A HD
Sbjct: 327 LCSEVVKQAAERACKQLGYPPFWLPSGAAHDG 358
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1
Length = 411
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 12/271 (4%)
Query: 9 IDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNI 68
++I+ + + R LE I+FT EE R+ + LGS ++ GI + K L S D Q
Sbjct: 99 LEILLQLCEQNIQTRYPLELIIFTCEESSRFNFATLGSKVMCGIVNQEK-LSSLRDKQGK 157
Query: 69 SFLHAARSAGHAKKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASAS 128
A G N ++ + F EL IEQG LE EG +I +VT IAA
Sbjct: 158 GLSEAMAEVG--MNFNLVNQAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIR 215
Query: 129 IKVDFEGNEGHAGAVLMPNS----LAAAEVALAVEKHVLESGSIDTVGTVGILELHSGAI 184
V +G H+GA M L +E++LA+E+ +++G TV TVG + G +
Sbjct: 216 AIVKIKGQADHSGATAMHYRHDALLGGSELSLAIERAAIQAGH-STVATVGNITAKPGVM 274
Query: 185 NSIPSKSHLEIDIDE---KRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSDRS 241
N +P L +DI + R +V E + + +++ RG+ L E +++++D P + +
Sbjct: 275 NVVPGYCELLVDIRGTHVQARDSVFELLQEEISKVSEKRGL-LIELQLISKDNPIILPEN 333
Query: 242 IILEAEVALKELNLTYKFMISRAYHDSPFMA 272
++ + L +Y+ M S A HD+ MA
Sbjct: 334 MVNQIAETAHSLGYSYEIMPSGAGHDAMHMA 364
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671)
GN=hyuC PE=1 SV=1
Length = 414
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 14/276 (5%)
Query: 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDG 65
L I+I++ + + S+E + F EE R+ GS + G + + + VD
Sbjct: 100 LAGIEIVHAISEANVVHEHSIEVVAFCEEEGSRFNDGLFGSRGMVG--KVKPEDLQKVDD 157
Query: 66 QNISFLHAARSAGHAKKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAA 125
N++ A ++ G + + G + E+ IEQG LE+ I IV+ IA
Sbjct: 158 NNVTRYEALKTFGFGIDPDFTHQSIREIGDIKHYFEMHIEQGPYLEKNNYPIGIVSGIAG 217
Query: 126 SASIKVDFEGNEGHAGAVLMPNSL------AAAEVALAVEKHVLESGSIDTVGTVGILEL 179
+ KV G GHAG V P SL AAEV VE + + TVGTVG +
Sbjct: 218 PSWFKVRLVGEAGHAGTV--PMSLRKDPLVGAAEVIKEVETLCMNDPNAPTVGTVGRIAA 275
Query: 180 HSGAINSIPSKSHLEIDIDE---KRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236
G N IP +DI + +RR +IEKI + ++ RG+ K + P
Sbjct: 276 FPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQIEKNMAAVPVK 335
Query: 237 LSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMA 272
S+ ++I + + KEL + ++S A HD+ F+A
Sbjct: 336 CSE-NLINSLKQSCKELEIDAPIIVSGAGHDAMFLA 370
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH
PE=1 SV=2
Length = 525
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 122/282 (43%), Gaps = 35/282 (12%)
Query: 23 RRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82
+R +E I F+ EE R+ + LGS LAGI +++ + D IS A +
Sbjct: 203 KRPVEVIAFSDEEGVRFQSTFLGSAALAGIMPVSR--LEVTDKSGISVQDALKENSIDIT 260
Query: 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGA 142
+L + S +VE+ IEQG +LE G + +V IA +KV +G++GHAG
Sbjct: 261 DENLMQLKYDPASVWGYVEVHIEQGPVLEWVGYPLGVVKGIAGQTRLKVTVKGSQGHAGT 320
Query: 143 VLM-----PNSLAAAEVAL----------------AVEKHVLESGSIDTVGTVGILELHS 181
V M P + AA + L + +ES + V TVG +
Sbjct: 321 VPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWP 380
Query: 182 GAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALS 238
A N IP + +D ID+ RK ++ + I R + S + + D +S
Sbjct: 381 SASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRSLLCSIERKHDAD-AVMS 439
Query: 239 DRSIILE----AEVALK----ELNLTYKFMISRAYHDSPFMA 272
D + L+ A+ ALK E+ ++S A HD+ MA
Sbjct: 440 DPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDAMAMA 481
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF
PE=2 SV=1
Length = 412
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 116/263 (44%), Gaps = 22/263 (8%)
Query: 22 PRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81
P+++LE + EE R+ ++ GS + G+ S +D D +S A +G K
Sbjct: 117 PKKTLEAVSLCEEEGSRFPMTYWGSGNMTGVFS-EQDAKEPRDESGVSLQTAMHESGFGK 175
Query: 82 KHNDLSSVFLK--KGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGH 139
VF + SAFVEL IEQG LE G + IVT+IA V EG H
Sbjct: 176 ------GVFQSAYRTDISAFVELHIEQGKTLEMSGRDLGIVTSIAGQRRYLVTLEGECNH 229
Query: 140 AGAVLM---PNSLAAAEVALAVEKHVLESGSI--DTVGTVGILELHSGAINSIPSKSHLE 194
AG M + LAA+ + + + +L S + + T G + N IP +
Sbjct: 230 AGTTSMKWRKDPLAAS--SRIIHELLLRSDELPDELRLTCGKITAEPNVANVIPGRVQFS 287
Query: 195 IDIDEKRRKTVIEKIHQSAIT----IAKNRGVTLSEFKIVNQDPPALSDRSIILEAEVAL 250
IDI + + V+E+ HQ + I +G+ + + +P + +R E AL
Sbjct: 288 IDIRHQHQH-VLEQFHQDMVALINGICLQKGIRAVIDEYMRIEPVPMDERLKAAAFETAL 346
Query: 251 KELNLTYKFMISRAYHDSPFMAR 273
E + + M+S A HD+ + R
Sbjct: 347 -ENGFSCEEMVSGAGHDAQMIGR 368
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC
PE=1 SV=1
Length = 411
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 16/259 (6%)
Query: 22 PRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81
P R++E + EE R+ GS + G+ + D+ + D + SF+ A ++ G
Sbjct: 114 PLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLAN-PDDVRNICDAKGNSFVDAMKACGFTL 172
Query: 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAG 141
+ L+ + AFVEL IEQG +LE G SI +V AI V G HAG
Sbjct: 173 PNAPLTP----RQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAG 228
Query: 142 AVLM----PNSLAAAEVA-LAVEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID 196
M A + + +VEK + V T G +E +N +P K+ ID
Sbjct: 229 TTPMGYRRDTVYAFSRICHQSVEKAKRMGDPL--VLTFGKVEPRPNTVNVVPGKTTFTID 286
Query: 197 I---DEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSDRSIILEAEVALKEL 253
D + +++ I + + ++++P ++ + E+ +E
Sbjct: 287 CRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCERE- 345
Query: 254 NLTYKFMISRAYHDSPFMA 272
L Y+ M S A HD+ A
Sbjct: 346 KLNYRVMHSGAGHDAQIFA 364
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1
Length = 438
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 15 VIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAA 74
V RSGF PR ++ + + +EE R+ S +GS + G L ++ ++T D +S A
Sbjct: 123 VTRSGFTPRYNVAVVDWFNEEGSRFKPSMMGSAVFTGTLDL-EEALNTTDDDGVSVRDAL 181
Query: 75 RSAGHAKKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFE 134
+ SS ++ +A+ E+ IEQG LE+ +I +V A+ +++
Sbjct: 182 AAINGIGDREVFSSTGPRQ--LAAYAEIHIEQGRELEKNNVTIGLVDRTWAANKYELNVV 239
Query: 135 GNEGHAGAVLMPNS----LAAAEVALAVEKHVLESGSIDTVGTVGILELHSGAINSIPSK 190
G +GH GA + + L AA + +A+ E G + + G L + + +P +
Sbjct: 240 GIQGHTGATAIEDRQDALLGAALIVVALRDIADEFGE-ELHTSCGQLTVLPNSPVVVPRE 298
Query: 191 SHLEIDI 197
H+ +D+
Sbjct: 299 VHMHLDL 305
>sp|Q89X19|LEU32_BRAJA 3-isopropylmalate dehydrogenase 2 OS=Bradyrhizobium japonicum
(strain USDA 110) GN=leuB2 PE=3 SV=1
Length = 370
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 176 ILELHSGAINSIPSKSHLEIDIDEKRRKTVIEKIHQSAITIA 217
I + +G++ +PS S E+D+ K+RK + E +H SA IA
Sbjct: 255 IAAMLTGSLGMLPSASLGEVDVKSKKRKALYEPVHGSAPDIA 296
>sp|Q68DK7|MSL1_HUMAN Male-specific lethal 1 homolog OS=Homo sapiens GN=MSL1 PE=1 SV=3
Length = 614
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 143 VLMPNSLAAAEVALAVEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEIDIDEKRR 202
LMP+S+A LAV S++ + +L +S+ SK H ++++DEKRR
Sbjct: 460 CLMPSSVAGETSVLAVP--SWRDHSVEPLRDPNPSDLLENLDDSVFSKRHAKLELDEKRR 517
Query: 203 KTV-IEKIHQSAI------TIAKNRGVTLSEFKIVN 231
K I++I + I + K +G+ SE ++ +
Sbjct: 518 KRWDIQRIREQRILQRLQLRMYKKKGIQESEPEVTS 553
>sp|Q6PDM1|MSL1_MOUSE Male-specific lethal 1 homolog OS=Mus musculus GN=Msl1 PE=1 SV=1
Length = 616
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 143 VLMPNSLAAAEVALAVEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEIDIDEKRR 202
LMP+S+A LAV S++ + ++ +S+ SK H ++++DEKRR
Sbjct: 462 CLMPSSVAGETSVLAVP--SWRDHSVEPLRDPNPSDILENLDDSVFSKRHAKLELDEKRR 519
Query: 203 KTV-IEKIHQSAI------TIAKNRGVTLSEFKIVN 231
K I++I + I + K +G+ SE ++ +
Sbjct: 520 KRWDIQRIREQRILQRLQLRMYKKKGIQESEPEVTS 555
>sp|Q3B1H7|RPOB_PELLD DNA-directed RNA polymerase subunit beta OS=Pelodictyon luteolum
(strain DSM 273) GN=rpoB PE=3 SV=1
Length = 1301
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 200 KRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSDRSII---LEAEVALK-ELNL 255
KRR+ +EK+ +SA I RG+ L E+ + D P + I L +V+LK +L L
Sbjct: 44 KRREQGLEKVLRSAFPITDTRGLYLLEYISYSFDKPKYTVEDCIERGLTYDVSLKVKLKL 103
Query: 256 TYK 258
+YK
Sbjct: 104 SYK 106
>sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase subunit beta OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=rpoB PE=3 SV=1
Length = 1303
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 199 EKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALSDRSII---LEAEVALK-ELN 254
EKR+ +EK+ +SA I RG+ L E+ + D P + I L +V+LK +L
Sbjct: 45 EKRKDQGLEKVLRSAFPITDTRGLYLLEYISYSFDKPKYTVEECIERGLTYDVSLKIKLK 104
Query: 255 LTYK 258
L+YK
Sbjct: 105 LSYK 108
>sp|P18339|RDRP_TMGMV Replicase large subunit OS=Tobacco mild green mosaic virus PE=3
SV=2
Length = 1609
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 112 EEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPNSLAAAEVALAVEKHVLESGSIDTV 171
E +V+V + K DFE + +L+P AAA + L ++D V
Sbjct: 821 EPTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLIRATMDNV 880
Query: 172 GTVGILELHSGAINSIPSKSHLEIDIDE 199
TV L +H +SH + IDE
Sbjct: 881 RTVDSLLMHPKP------RSHKRLFIDE 902
>sp|Q3ANU2|PGK_CHLCH Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3)
GN=pgk PE=3 SV=1
Length = 397
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 36/186 (19%)
Query: 18 SGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAG----IESLAKDLISTVDGQNISFLHA 73
+GF R L ++ +EP+R ++ LG ++G +E+L K + + + G + F
Sbjct: 169 AGFLIERELRYLGKALQEPERPFVAILGGSKISGKIDVLENLFKKVDTVLIGGAMVF--- 225
Query: 74 ARSAGHAKKHNDLSSVFLKKGSY----SAFVELQIEQGL-ILEE---EGTSIVIVTAIAA 125
F K Y S E +IE L ILE+ +G +++ T +
Sbjct: 226 ---------------TFFKAQGYEVGKSLVEESKIELALSILEQAKAKGIKLLLPTDVVV 270
Query: 126 SASIKVDFEGNEGHAGAVLMPNSLAAA----EVALAVEKHVLESGSIDTVGTVGILELHS 181
+A I D E + A MPN+L E A A ++ + ++ G +G+ EL +
Sbjct: 271 TAEISADAESS--VASIADMPNNLIGVDIGPETAAAYRNEIIGARTVLWNGPMGVFELDN 328
Query: 182 GAINSI 187
A +I
Sbjct: 329 FATGTI 334
>sp|B1MZM9|DAPEL_LEUCK N-acetyldiaminopimelate deacetylase OS=Leuconostoc citreum (strain
KM20) GN=LCK_01154 PE=3 SV=1
Length = 387
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 121 TAIAASASIKVDFEGNEGHAGAVLMPNSLAAAEVALAVEKHVLESGSIDTV--GTVGILE 178
T A +A +KVD G GHA + L ++ + S S+D + G V +
Sbjct: 177 TLFAGTAELKVDVIGTGGHAAYPHLAKDPIVIAAELIIQLQTVVSRSVDPIAGGVVSVGV 236
Query: 179 LHSG-AINSIPSKSHLEIDIDEKRR---KTVIEKIHQSAITIAKNRGVTLS 225
++ G A N IP + H E + R +T++ +I + A +A VT++
Sbjct: 237 INGGFANNVIPDQVHFEGTVRSMTRTGLETMLTRIRKIAEGLAIANEVTIN 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,874,655
Number of Sequences: 539616
Number of extensions: 3518430
Number of successful extensions: 10683
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 10658
Number of HSP's gapped (non-prelim): 34
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)