Query 043727
Match_columns 275
No_of_seqs 251 out of 1902
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03176 AllC allantoate amid 100.0 1.5E-50 3.3E-55 369.7 30.8 264 2-273 90-360 (406)
2 PRK13799 unknown domain/N-carb 100.0 2.4E-49 5.2E-54 375.8 31.2 267 2-273 272-545 (591)
3 PRK13590 putative bifunctional 100.0 6.6E-48 1.4E-52 366.3 30.7 265 2-273 272-543 (591)
4 TIGR01879 hydantase amidase, h 100.0 6E-44 1.3E-48 326.3 31.3 264 3-273 89-359 (401)
5 PRK12891 allantoate amidohydro 100.0 4E-43 8.6E-48 322.1 31.2 262 2-272 97-365 (414)
6 PRK12892 allantoate amidohydro 100.0 1.7E-39 3.8E-44 298.0 31.1 264 3-273 96-367 (412)
7 PRK12890 allantoate amidohydro 100.0 1.9E-37 4.1E-42 284.6 31.6 266 3-273 96-368 (414)
8 PRK12893 allantoate amidohydro 100.0 1.4E-36 3E-41 278.7 31.0 262 3-273 98-366 (412)
9 PRK09290 allantoate amidohydro 100.0 7.9E-35 1.7E-39 267.2 31.7 266 3-273 95-367 (413)
10 COG1473 AbgB Metal-dependent a 100.0 2.6E-27 5.7E-32 212.8 24.4 218 5-274 108-342 (392)
11 PLN02693 IAA-amino acid hydrol 99.9 1.4E-25 3E-30 206.7 24.9 214 4-273 140-373 (437)
12 PRK07338 hypothetical protein; 99.9 1.3E-25 2.9E-30 205.4 21.9 215 3-273 132-355 (402)
13 PLN02280 IAA-amino acid hydrol 99.9 2.8E-25 6E-30 206.3 24.2 218 4-273 190-425 (478)
14 PRK07473 carboxypeptidase; Pro 99.9 6.7E-25 1.5E-29 199.0 21.2 210 3-273 115-333 (376)
15 PRK08588 succinyl-diaminopimel 99.9 9.9E-25 2.1E-29 198.1 20.9 215 3-273 103-331 (377)
16 TIGR01883 PepT-like peptidase 99.9 1.5E-24 3.3E-29 195.7 19.5 212 3-273 103-322 (361)
17 TIGR01891 amidohydrolases amid 99.9 7.1E-24 1.5E-28 191.5 23.4 220 4-273 94-326 (363)
18 PRK06133 glutamate carboxypept 99.9 2.8E-24 6E-29 197.2 21.0 214 3-273 139-363 (410)
19 TIGR01910 DapE-ArgE acetylorni 99.9 1.8E-24 3.9E-29 196.3 18.7 216 3-273 108-341 (375)
20 PRK08651 succinyl-diaminopimel 99.9 7.1E-23 1.5E-27 186.9 20.8 212 3-273 117-348 (394)
21 PRK06915 acetylornithine deace 99.9 1.7E-22 3.6E-27 186.1 21.7 213 3-273 137-374 (422)
22 PRK13013 succinyl-diaminopimel 99.9 2.4E-22 5.2E-27 185.3 22.6 219 3-273 126-377 (427)
23 PRK13009 succinyl-diaminopimel 99.9 4.5E-22 9.7E-27 180.5 22.9 220 3-273 102-332 (375)
24 PRK00466 acetyl-lysine deacety 99.9 1.2E-22 2.5E-27 182.5 18.0 200 3-273 95-300 (346)
25 PRK05469 peptidase T; Provisio 99.9 6.7E-22 1.4E-26 181.4 21.2 208 3-273 143-363 (408)
26 PRK13983 diaminopimelate amino 99.9 8.4E-22 1.8E-26 180.1 21.0 222 3-273 120-359 (400)
27 TIGR01246 dapE_proteo succinyl 99.9 4.8E-21 1E-25 173.5 24.3 220 3-273 99-329 (370)
28 PRK08652 acetylornithine deace 99.9 1.2E-21 2.6E-26 175.8 19.0 206 3-273 90-302 (347)
29 PRK13381 peptidase T; Provisio 99.9 3.6E-21 7.8E-26 176.3 22.3 208 3-273 141-361 (404)
30 TIGR01882 peptidase-T peptidas 99.9 7.5E-21 1.6E-25 174.5 23.2 210 3-273 145-365 (410)
31 PRK07522 acetylornithine deace 99.9 5.2E-21 1.1E-25 174.1 19.5 211 3-273 107-341 (385)
32 PRK06837 acetylornithine deace 99.9 1.1E-20 2.4E-25 174.3 20.7 213 3-273 141-379 (427)
33 PRK09133 hypothetical protein; 99.9 8.8E-21 1.9E-25 177.0 20.1 220 3-273 144-422 (472)
34 TIGR01880 Ac-peptdase-euk N-ac 99.9 1.9E-20 4.1E-25 171.3 20.4 221 3-273 115-353 (400)
35 TIGR01892 AcOrn-deacetyl acety 99.9 3E-20 6.6E-25 167.7 20.4 207 3-273 101-325 (364)
36 PRK08262 hypothetical protein; 99.9 1.9E-20 4.2E-25 175.4 18.0 224 3-273 157-436 (486)
37 TIGR01902 dapE-lys-deAc N-acet 99.9 3.6E-20 7.8E-25 165.7 18.4 200 3-273 85-290 (336)
38 COG0624 ArgE Acetylornithine d 99.9 3.7E-20 8E-25 169.9 18.8 226 3-274 119-365 (409)
39 PRK05111 acetylornithine deace 99.9 6.7E-20 1.5E-24 166.7 19.9 207 3-273 114-338 (383)
40 PRK07906 hypothetical protein; 99.8 3.2E-20 6.9E-25 171.2 16.4 221 3-273 108-377 (426)
41 TIGR03320 ygeY M20/DapE family 99.8 2.6E-19 5.6E-24 163.6 20.0 208 3-269 111-346 (395)
42 PRK13004 peptidase; Reviewed 99.8 1.7E-19 3.6E-24 165.1 18.6 213 3-272 113-351 (399)
43 PRK08737 acetylornithine deace 99.8 4.7E-19 1E-23 160.1 20.6 203 3-273 105-322 (364)
44 TIGR03526 selenium_YgeY putati 99.8 5.6E-19 1.2E-23 161.4 20.5 210 3-269 111-346 (395)
45 TIGR01893 aa-his-dipept aminoa 99.8 2.6E-19 5.5E-24 167.4 17.7 200 3-253 112-321 (477)
46 TIGR01900 dapE-gram_pos succin 99.8 3.7E-19 8.1E-24 161.3 17.3 216 3-273 106-349 (373)
47 PRK04443 acetyl-lysine deacety 99.8 1.9E-18 4.1E-23 155.3 18.1 201 3-273 94-305 (348)
48 PRK06446 hypothetical protein; 99.8 3.6E-18 7.8E-23 158.0 20.0 216 3-272 106-386 (436)
49 KOG2275 Aminoacylase ACY1 and 99.8 4.9E-18 1.1E-22 149.5 18.6 218 5-272 134-372 (420)
50 PRK07318 dipeptidase PepV; Rev 99.8 3.2E-18 6.9E-23 159.6 17.5 231 3-272 121-422 (466)
51 PRK08596 acetylornithine deace 99.8 8.2E-18 1.8E-22 154.9 19.6 212 3-273 121-373 (421)
52 PRK13007 succinyl-diaminopimel 99.8 8.3E-18 1.8E-22 151.3 18.6 202 3-273 98-312 (352)
53 PRK08201 hypothetical protein; 99.8 1.7E-17 3.7E-22 154.3 19.8 219 3-271 123-408 (456)
54 PRK09104 hypothetical protein; 99.8 9.5E-17 2E-21 149.7 20.3 220 3-271 131-415 (464)
55 PRK07907 hypothetical protein; 99.7 6E-17 1.3E-21 150.4 17.4 210 3-267 127-394 (449)
56 PRK07205 hypothetical protein; 99.7 1.7E-16 3.7E-21 147.1 19.8 223 3-271 119-398 (444)
57 PRK07079 hypothetical protein; 99.7 1.8E-16 4E-21 147.9 18.9 217 3-273 130-410 (469)
58 TIGR01886 dipeptidase dipeptid 99.7 4.7E-16 1E-20 144.9 20.9 228 4-272 121-422 (466)
59 PRK06156 hypothetical protein; 99.7 4.8E-16 1E-20 146.7 20.4 136 128-272 300-472 (520)
60 TIGR01887 dipeptidaselike dipe 99.6 3.6E-14 7.9E-19 131.5 20.6 224 4-272 110-408 (447)
61 PF07687 M20_dimer: Peptidase 99.6 3.8E-14 8.3E-19 106.2 13.2 97 121-219 1-110 (111)
62 PRK15026 aminoacyl-histidine d 99.6 2.4E-13 5.3E-18 126.9 20.1 85 124-217 199-291 (485)
63 PRK08554 peptidase; Reviewed 99.5 2.5E-13 5.4E-18 125.6 14.8 88 183-273 301-395 (438)
64 COG2195 PepD Di- and tripeptid 99.3 2.9E-11 6.3E-16 109.5 14.3 212 3-273 147-369 (414)
65 KOG2276 Metalloexopeptidases [ 97.7 0.0023 4.9E-08 57.4 15.2 204 5-256 137-408 (473)
66 PF04389 Peptidase_M28: Peptid 97.6 5.8E-05 1.3E-09 61.2 4.0 44 3-51 29-72 (179)
67 PF01546 Peptidase_M20: Peptid 97.2 0.00071 1.5E-08 54.9 5.5 43 3-50 39-82 (189)
68 TIGR01893 aa-his-dipept aminoa 97.2 0.0024 5.3E-08 60.0 9.8 90 170-273 338-433 (477)
69 PRK10199 alkaline phosphatase 97.1 0.00059 1.3E-08 60.9 4.9 44 3-53 146-189 (346)
70 COG4187 RocB Arginine degradat 97.0 0.0084 1.8E-07 54.4 10.4 112 3-159 143-261 (553)
71 COG2234 Iap Predicted aminopep 95.8 0.011 2.4E-07 54.8 4.4 45 3-54 231-275 (435)
72 PRK15026 aminoacyl-histidine d 95.7 0.085 1.8E-06 49.8 9.9 90 170-273 344-439 (485)
73 TIGR03106 trio_M42_hydro hydro 94.9 0.04 8.7E-07 49.5 4.9 35 3-37 186-220 (343)
74 COG1363 FrvX Cellulase M and r 93.8 0.086 1.9E-06 47.4 4.3 45 3-54 183-227 (355)
75 PF05450 Nicastrin: Nicastrin; 93.5 0.14 3E-06 43.5 4.9 45 2-51 26-73 (234)
76 PF05343 Peptidase_M42: M42 gl 93.0 0.14 3E-06 45.1 4.4 42 3-51 137-178 (292)
77 TIGR03107 glu_aminopep glutamy 92.2 0.18 4E-06 45.4 4.2 45 3-54 181-225 (350)
78 PRK09961 exoaminopeptidase; Pr 92.1 0.24 5.1E-06 44.6 4.8 45 3-54 169-213 (344)
79 PRK09864 putative peptidase; P 91.3 0.25 5.5E-06 44.6 4.1 43 3-54 178-220 (356)
80 KOG2194 Aminopeptidases of the 90.7 0.33 7.1E-06 48.0 4.4 47 3-54 166-212 (834)
81 COG4882 Predicted aminopeptida 90.3 0.5 1.1E-05 42.2 4.8 49 2-54 209-261 (486)
82 KOG2195 Transferrin receptor a 90.2 0.38 8.3E-06 47.2 4.4 43 4-51 374-419 (702)
83 TIGR03107 glu_aminopep glutamy 68.4 6.8 0.00015 35.4 4.0 37 235-271 260-296 (350)
84 PF01546 Peptidase_M20: Peptid 66.3 5.6 0.00012 31.7 2.8 37 237-273 109-146 (189)
85 PRK09961 exoaminopeptidase; Pr 63.6 9.5 0.00021 34.3 3.9 38 235-272 251-289 (344)
86 PF05343 Peptidase_M42: M42 gl 60.0 8.3 0.00018 33.9 2.8 38 237-274 220-258 (292)
87 PRK09864 putative peptidase; P 56.8 14 0.0003 33.5 3.7 39 235-273 259-298 (356)
88 TIGR03106 trio_M42_hydro hydro 54.0 18 0.00039 32.6 4.0 37 237-273 263-300 (343)
89 COG1363 FrvX Cellulase M and r 50.6 20 0.00044 32.4 3.7 36 238-273 267-303 (355)
90 PF10664 NdhM: Cyanobacterial 48.1 1E+02 0.0022 22.4 6.2 34 183-216 17-58 (108)
91 PRK02256 putative aminopeptida 43.5 29 0.00064 32.6 3.8 30 3-36 263-292 (462)
92 PF14134 DUF4301: Domain of un 40.3 1E+02 0.0022 29.2 6.7 47 189-236 199-245 (513)
93 cd00959 DeoC 2-deoxyribose-5-p 33.7 2.5E+02 0.0055 22.9 7.6 9 170-178 88-96 (203)
94 PRK06156 hypothetical protein; 30.2 1.1E+02 0.0024 29.2 5.5 123 3-211 157-281 (520)
95 TIGR02159 PA_CoA_Oxy4 phenylac 29.2 2.8E+02 0.006 21.6 8.1 68 184-258 20-91 (146)
96 TIGR00126 deoC deoxyribose-pho 28.5 2.9E+02 0.0062 23.0 7.0 11 169-179 88-98 (211)
97 PRK02813 putative aminopeptida 28.4 51 0.0011 30.7 2.8 29 3-36 237-265 (428)
98 KOG2657 Transmembrane glycopro 27.9 66 0.0014 30.5 3.3 44 2-50 203-248 (596)
99 PTZ00371 aspartyl aminopeptida 27.0 97 0.0021 29.2 4.4 44 3-51 254-298 (465)
100 cd06276 PBP1_FucR_like Ligand- 25.5 98 0.0021 25.9 3.9 34 5-38 171-204 (247)
101 PF09650 PHA_gran_rgn: Putativ 25.1 1.3E+02 0.0028 21.1 3.8 29 199-228 8-36 (87)
102 PF09981 DUF2218: Uncharacteri 24.8 1.1E+02 0.0025 21.5 3.5 40 185-224 46-86 (89)
103 PRK08673 3-deoxy-7-phosphohept 22.8 3E+02 0.0065 24.8 6.5 84 167-260 77-163 (335)
104 cd06287 PBP1_LacI_like_8 Ligan 22.8 1.2E+02 0.0025 25.7 3.9 31 6-36 188-218 (269)
105 PF13377 Peripla_BP_3: Peripla 21.8 1.3E+02 0.0029 22.7 3.7 30 6-35 78-107 (160)
106 TIGR02610 PHA_gran_rgn putativ 21.3 1.8E+02 0.0039 20.7 3.9 35 193-228 4-39 (91)
107 TIGR01481 ccpA catabolite cont 20.6 1.4E+02 0.0029 26.0 3.9 32 6-37 246-277 (329)
108 PRK10727 DNA-binding transcrip 20.1 1.3E+02 0.0029 26.3 3.8 31 6-36 247-277 (343)
No 1
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=1.5e-50 Score=369.70 Aligned_cols=264 Identities=26% Similarity=0.363 Sum_probs=233.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 2 FKLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
.+||+++|++++.|++++++|++||+|++|++||++|||++++||+++.|.+. .+.+..++|.+|+|+.|+|+++||++
T Consensus 90 ~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~-~~~~~~~~d~~g~~~~~~~~~~g~~~ 168 (406)
T TIGR03176 90 QFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAK-PEDVRTIEDAKGIKFVDAMHACGFDL 168 (406)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCC-HHHHHhCcCCCCCCHHHHHHHcCCCc
Confidence 48999999999999999999999999999999999999999999999999776 34455678999999999999999976
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH----HHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN----SLAAAEVALA 157 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g----i~aaa~~i~~ 157 (275)
+ .++... .++++|||+||||||+||..+.++|+|++++|..||+|+++|+++|+|++|+.+ +.++++++..
T Consensus 169 ~--~~~~~~---~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~ 243 (406)
T TIGR03176 169 R--KAPTVR---DDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQ 243 (406)
T ss_pred c--cccccc---cccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHH
Confidence 4 233322 379999999999999999999999999999999999999999999999888853 9999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
++++..+.. +..++|||+|+++|++.|+||++|++++| ++.+.++.+.++|++.+++++..+++++ +++.....+
T Consensus 244 l~~~~~~~~-~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~-ei~~~~~~~ 321 (406)
T TIGR03176 244 SIERAKEIG-DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADEMDITI-DIDLWMDEA 321 (406)
T ss_pred HHHHHHhcC-CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeE-EEEEEecCC
Confidence 988765432 45799999999767899999999999999 8889999999999999999999999999 888655556
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
|...|+++++.+++++++.+.+....+++++||+++|++
T Consensus 322 p~~~d~~lv~~l~~a~~~~~~~~~~~~sggg~Da~~~~~ 360 (406)
T TIGR03176 322 PVPMNKEIVAIIEQLAKAEKLNYRLMHSGAGHDAQIFAP 360 (406)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceecCcccHHHHHHHHH
Confidence 677789999999999998876656678889999999975
No 2
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=375.77 Aligned_cols=267 Identities=28% Similarity=0.358 Sum_probs=237.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 2 FKLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
.+||+++|++++.|+++++++++||.|++|+|||++|||.+++||++++|.+. ....+++|.+|+++.++|+++|+.+
T Consensus 272 ~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~--~~~~~~~d~~G~~~~~~l~~~g~~~ 349 (591)
T PRK13799 272 REGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFN--MELLDIKDADGISLREAIQHAGHCI 349 (591)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCCCh--HHHHhccCCCCCCHHHHHHHcCCCh
Confidence 47999999999999999999999999999999999999999999999999665 3345678999999999999999965
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH----HHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN----SLAAAEVALA 157 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g----i~aaa~~i~~ 157 (275)
. .++.+.++++++++|||+||||||+||..+.++|+|++++|..||+|+++|+++|+|++|+.. +.++++++..
T Consensus 350 ~--~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~ 427 (591)
T PRK13799 350 D--AIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALY 427 (591)
T ss_pred h--hccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHH
Confidence 3 344445555789999999999999999999999999999999999999999999998888753 9999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
++++..+...+..++|||+|++++++.|+||++|++++| ++.+..+.+.+++++.++++++.+++++ +++.....|
T Consensus 428 l~~~~~~~~~~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~-ei~~~~~~~ 506 (591)
T PRK13799 428 IEKRAAQDQHASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEY-KAELAMKAA 506 (591)
T ss_pred HHHHHHhcCCCCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEEEecCC
Confidence 998765432234689999999765689999999999999 8889999999999999999999999999 998877888
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
++.+|+++++.++++++++|.+....++++|||+++|++
T Consensus 507 ~~~~d~~lv~~~~~a~~~~G~~~~~~~sgag~Da~~~a~ 545 (591)
T PRK13799 507 AAPCAPELMKQLEAATDAAGVPLFELASGAGHDAMKIAE 545 (591)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCceecCcchHHHHHHHHh
Confidence 999999999999999988888776678899999999975
No 3
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=6.6e-48 Score=366.26 Aligned_cols=265 Identities=28% Similarity=0.357 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 2 FKLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
.+||+++|++++.|+++++++++||.|++|+|||++|||++++||++++|.++ ..+.+.+|.+|+++.|+|+++||.+
T Consensus 272 ~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~--~~~~~~~d~~g~~~~~al~~~g~~~ 349 (591)
T PRK13590 272 RLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFD--PAWLDQKDADGITMREAMQHAGLCI 349 (591)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCCCh--HHHHhccCCCCCCHHHHHHHcCCCh
Confidence 47999999999999999999999999999999999999999999999999665 3344567899999999999999975
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH----HHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN----SLAAAEVALA 157 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g----i~aaa~~i~~ 157 (275)
+ .+.+..+++.++.+|+|+||||||+||..+.++++|++++|..||+|+++|+++|+|++|+.+ +.++++++..
T Consensus 350 ~--~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~ 427 (591)
T PRK13590 350 D--DIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALY 427 (591)
T ss_pred h--hccccccCCCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHH
Confidence 4 355666667789999999999999999999999999999999999999999999999889873 9999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
++++... . +..++|||.|+.+|+++||||++|++++| ++.+.++.+.++|++.+++++..+|+++ +++.....|
T Consensus 428 l~~~~~~-~-~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~v-ei~~~~~~~ 504 (591)
T PRK13590 428 VEQRAAQ-D-GDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRY-TLEETMRAA 504 (591)
T ss_pred HHHHHhc-C-CCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeE-EEEEeecCC
Confidence 9886543 2 34588999999755799999999999999 8889999999999999999999999999 998877888
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
++.+|+++++.++++++++|.+....++++|||+++|++
T Consensus 505 ~~~~d~~lv~~~~~aa~~~G~~~~~~~sggg~Da~~~a~ 543 (591)
T PRK13590 505 AAPSAPAWQQRWEAAVAALGLPLFRMPSGAGHDAMKLHE 543 (591)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCcccCCcchhHHHHHHHH
Confidence 999999999999999998888766678899999999875
No 4
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=6e-44 Score=326.30 Aligned_cols=264 Identities=27% Similarity=0.420 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
+|++++|++++.|++.+++++++|.|++|+|||++|||.+++||+.++++.. .+....+.|.+|.++.++|.+.|...
T Consensus 89 ~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~g~~~- 166 (401)
T TIGR01879 89 LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLAN-PEDVRNICDAKGISFAEAMKACGPDL- 166 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccc-hhHHHhCcCCCCCCHHHHHHHcCCCc-
Confidence 5899999999999999999999999999999999999999999999988654 22233345678999999999998543
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhh-H---HHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMP-N---SLAAAEVALAV 158 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~-g---i~aaa~~i~~l 158 (275)
....++. +.++++|+|+||||||+|+..+.+++++.+++|..|++|+++|+++|+|++|+. + |.++++++.+|
T Consensus 167 -~~~~~~~--~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l 243 (401)
T TIGR01879 167 -PNQPLRP--RGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQV 243 (401)
T ss_pred -ccccccc--cccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHH
Confidence 2223332 347889999999999999999999999999999999999999999999878863 4 99999999999
Q ss_pred HHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Q 043727 159 EKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP 235 (275)
Q Consensus 159 ~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~ 235 (275)
+++..+.. ++.+.++|.|++++.+.|+||++|++.+| .+.++.+.+.++|++++++.+..+++++ +++....++|
T Consensus 244 ~~l~~~~~-~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 321 (401)
T TIGR01879 244 EEKAKRMG-DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGI-DIERWMDEEP 321 (401)
T ss_pred HHHHHhcC-CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceE-EEEEeecCCC
Confidence 98765433 35688999999866689999999999999 7889999999999999999888889999 8887777889
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 236 ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 236 ~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.+|+++++.++++++++|.+....+++++||+++|.+
T Consensus 322 ~~~d~~lv~~l~~a~~~~g~~~~~~~~~ggtDa~~~~~ 359 (401)
T TIGR01879 322 VPCSEELVAALTELCERLGYNARVMVSGAGHDAQILAP 359 (401)
T ss_pred cCCCHHHHHHHHHHHHHcCCCccccccchHHHHHHHHh
Confidence 99999999999999998887665667889999999975
No 5
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=4e-43 Score=322.09 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=231.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 2 FKLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
..||+++|+|++.|++.+++++++|.|++++|||+++||.+++||+++.|.+. .+.+.+.+|.+|.++.++|.+.|+.+
T Consensus 97 k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 175 (414)
T PRK12891 97 IYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYP-LEYLLSRRDDTGRTLGEHLARIGYAG 175 (414)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCC-HHHHHhccCCCCCCHHHHHHHCCCCc
Confidence 47999999999999999999999999999999999999999999999998766 45555667899999999999999975
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhh-H---HHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMP-N---SLAAAEVALA 157 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~-g---i~aaa~~i~~ 157 (275)
+...+ +.++++|+|+|+|||+++|.++.+++++++++|..||+|+++|+++|+|++|+. + |.++++++.+
T Consensus 176 ~~~~~------~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~ 249 (414)
T PRK12891 176 AEPVG------GYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAF 249 (414)
T ss_pred ccccc------cCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHH
Confidence 43222 246789999999999999999999999999999999999999999999878873 4 9999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
|+++..... +..++|+|.|++|+.+.|+||++|++++| ++.++.+++.++|++++++++..+++++ +++....+|
T Consensus 250 l~~~~~~~~-~~~t~~vg~I~gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~-~~~~~~~~~ 327 (414)
T PRK12891 250 LDALGRRDA-PDARATVGMIDARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRA-DIEQIFGYA 327 (414)
T ss_pred HHHHHHhcC-CCeEEEEEEEEeeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEE-EEEEEecCC
Confidence 998765432 35799999999865689999999999999 7889999999999999999888889999 988777889
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhh
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~ 272 (275)
|+.+|+++++.++++++++|.+.....++++||++++.
T Consensus 328 ~~~~d~~lv~~l~~a~~~~G~~~~~~~~~ggtDa~~~~ 365 (414)
T PRK12891 328 PAPFAPGCIDAVRDAARALGLSHMDIVSGAGHDACFAA 365 (414)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCceecCCcchHHHHHHH
Confidence 99999999999999998888766566788999998874
No 6
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.7e-39 Score=297.97 Aligned_cols=264 Identities=25% Similarity=0.350 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhccc-CCCCCcHHHHHHHcCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTV-DGQNISFLHAARSAGHAK 81 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~-~~~g~~~~e~~~~~g~~~ 81 (275)
.|++++|++++.|++++++++++|.|++++|||++|||.++.||+++++.+. .+.+.... ..+|.++.+++.+.|+.+
T Consensus 96 ~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~ 174 (412)
T PRK12892 96 LGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLD-PADALAARCRSDGVPLRDALAAAGLAG 174 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCC-HHHHHhCccCCCCcCHHHHHHHcCCCh
Confidence 5899999999999999999999999999999999999999999999987654 12211122 246889999999999987
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchh-hH---HHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLM-PN---SLAAAEVALA 157 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~-~g---i~aaa~~i~~ 157 (275)
+...+.+ |++..+|+|+|++||+++|+.+.+.+++.+++|..||+|+++|+++|+|++|+ .+ |.++++++.+
T Consensus 175 d~~~~~e----p~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~ 250 (412)
T PRK12892 175 RPRPAAD----RARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAA 250 (412)
T ss_pred hhccccc----ccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHH
Confidence 6555544 45788999999999999999998889999999999999999999999987786 34 9999999999
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
++++..+.. .+.++++|.|++|+++.|+||++|++++| ++.+..+++.++|++++++++..+++++ +++....+|
T Consensus 251 l~~~~~~~~-~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~-e~~~~~~~~ 328 (412)
T PRK12892 251 IDEHFPRVC-GPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRV-SVDRIAEYA 328 (412)
T ss_pred HHHHHHhcC-CCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEEEecCC
Confidence 998765432 35799999999865699999999999999 7889999999999999999888889999 888777788
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
|+.+|+++++.+++++++.|.+.....++++||+++|.+
T Consensus 329 ~~~~d~~lv~~~~~a~~~~g~~~~~~~~~g~tDa~~~~~ 367 (412)
T PRK12892 329 PAPCDAALVDALRAAAEAAGGPYLEMPSGAGHDAQNMAR 367 (412)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCccccCcchHHHHHHHHh
Confidence 888999999999999988877655566789999999865
No 7
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.9e-37 Score=284.62 Aligned_cols=266 Identities=32% Similarity=0.429 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
+|++++|++++.|++.+.+++++|.|++++|||+++||.+++||+++.+.+. ...+....+.++.++.+++.+.|+..+
T Consensus 96 ~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 174 (414)
T PRK12890 96 LGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLD-VEAVLATRDDDGTTLAEALRRIGGDPD 174 (414)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccC-hHHHHhccCCCCCCHHHHHHHcCCChh
Confidence 5899999999999999988899999999999999999999999999988664 233333345689999999999998654
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchh-hH---HHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLM-PN---SLAAAEVALAV 158 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~-~g---i~aaa~~i~~l 158 (275)
.... ....|+.+++|+++|++||++++..+...+++.+++|..|++|+++|+++|+|+.|+ .+ |..+++++.+|
T Consensus 175 ~~~~--~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l 252 (414)
T PRK12890 175 ALPG--ALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAM 252 (414)
T ss_pred hccc--cccCCCCccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHH
Confidence 2111 112256789999999999999999888888999999999999999999999976685 43 99999999999
Q ss_pred HHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Q 043727 159 EKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP 235 (275)
Q Consensus 159 ~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~ 235 (275)
+++..+.. +..++++|.|++++++.|+||++|++++| .+.++.+++.++|++++++.+..+++++ +++....+|+
T Consensus 253 ~~~~~~~~-~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 330 (414)
T PRK12890 253 ERRARALL-HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRI-ELERLSRSEP 330 (414)
T ss_pred HHHHHhcC-CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEEeecCCC
Confidence 98765433 46789999999755799999999999999 7889999999999999999888888999 8887777888
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 236 ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 236 ~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.+|+++++.+.+++++.|.+.....+++++|+++|.+
T Consensus 331 ~~~~~~l~~~l~~~~~~~g~~~~~~~~~g~tDa~~~~~ 368 (414)
T PRK12890 331 VPCDPALVDAVEAAAARLGYPSRRMPSGAGHDAAAIAR 368 (414)
T ss_pred cCCCHHHHHHHHHHHHHcCCCceecCCcccHHHHHHHh
Confidence 88999999999999988877655566788999999975
No 8
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.4e-36 Score=278.74 Aligned_cols=262 Identities=31% Similarity=0.429 Sum_probs=221.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+.+++++|.|++++|||+++|+.+++||+++.+... .+.+....+.++..+.|++.+.|+.++
T Consensus 98 ~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (412)
T PRK12893 98 LGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALP-LDDALARRDADGITLGEALARIGYRGT 176 (412)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCC-hHHHHhccCCCCCCHHHHHHHcCCCcc
Confidence 4899999999999999988899999999999999999999999999987543 122111234578888998888888754
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchh-hH---HHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLM-PN---SLAAAEVALAV 158 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~-~g---i~aaa~~i~~l 158 (275)
...+ +.++++|+++|++||++++..+....++.+++|..|++|+++|+++|+|++|+ .| |.++++++.+|
T Consensus 177 ~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l 250 (412)
T PRK12893 177 ARVG------RRAVDAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAV 250 (412)
T ss_pred cccc------cCCccEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHH
Confidence 2211 24689999999999999999888888999999999999999999999876785 55 99999999999
Q ss_pred HHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Q 043727 159 EKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP 235 (275)
Q Consensus 159 ~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~ 235 (275)
+++..+.. +..++++|.|++++++.|+||++|++++| .+.++.+++.++|++++++.+..+++++ +++....+||
T Consensus 251 ~~~~~~~~-~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v-~~~~~~~~~~ 328 (412)
T PRK12893 251 ERIAAALA-PDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQV-TVETVWDFPP 328 (412)
T ss_pred HHHHHhcC-CCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeE-EEEEEecCCC
Confidence 98765433 35789999999755799999999999999 7889999999999999999888889999 8877677888
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 236 ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 236 ~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.+|+++++.++++++++|.+.....+++++|+++|.+
T Consensus 329 ~~~d~~l~~~l~~~~~~~g~~~~~~~~~g~tD~~~~~~ 366 (412)
T PRK12893 329 VPFDPALVALVEAAAEALGLSHMRMVSGAGHDAMFLAR 366 (412)
T ss_pred cCCCHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHh
Confidence 88999999999999988876655566788999999874
No 9
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=7.9e-35 Score=267.17 Aligned_cols=266 Identities=33% Similarity=0.507 Sum_probs=222.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|+++++.++++|++.+.+++++|.|++++|||.+.||.++.|++.+.+.+. .+.+....+.++..+.|+|.+.|+.++
T Consensus 95 ~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d 173 (413)
T PRK09290 95 LGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALT-PEDALALRDADGVSFAEALAAIGYDGD 173 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccC-HHHHHhccCCCCCCHHHHHHHcCCChh
Confidence 5899999999999999988899999999999999888888999999877553 222222236688889998888888765
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcch-hhH---HHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVL-MPN---SLAAAEVALAV 158 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p-~~g---i~aaa~~i~~l 158 (275)
...++ .+.|+.++.|++.|+++|.++|+++....++.+++|..|++|+++|+++|+++.| +.| |..+++++++|
T Consensus 174 ~~i~~--~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l 251 (413)
T PRK09290 174 EAVGA--ARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAV 251 (413)
T ss_pred hcccc--ccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHH
Confidence 32211 1135778899999999999999998877899999999999999999999987668 455 99999999999
Q ss_pred HHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Q 043727 159 EKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP 235 (275)
Q Consensus 159 ~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~ 235 (275)
+++..+.. ++.++++|.+++++++.|+||++|++++| ++.++.+++.++|++++++.+..+++++ +++....+||
T Consensus 252 ~~l~~~~~-~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~-e~~~~~~~~~ 329 (413)
T PRK09290 252 ERIAAAHG-PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEV-EIELISRRPP 329 (413)
T ss_pred HHHHHhcC-CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeE-EEEEEecCCC
Confidence 88764433 35789999999755689999999999999 7889999999999999999888889998 8887677888
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 236 ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 236 ~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.+|+++++.++++++++|.+.....+++++|+++|.+
T Consensus 330 ~~~d~~lv~~l~~a~~~~g~~~~~~~~~g~tDa~~~~~ 367 (413)
T PRK09290 330 VPFDPGLVAALEEAAERLGLSYRRLPSGAGHDAQILAA 367 (413)
T ss_pred ccCCHHHHHHHHHHHHHcCCCccccCCccchHHHHHhc
Confidence 88999999999999988876654556778999999853
No 10
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=212.76 Aligned_cols=218 Identities=21% Similarity=0.216 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCCC
Q 043727 5 CLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKHN 84 (275)
Q Consensus 5 v~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~~ 84 (275)
.+++|.+++.|++....++++|.|++++.||+. . |++.+.. + |.-
T Consensus 108 ta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~-----~-Ga~~mi~--------------~-----------G~~---- 152 (392)
T COG1473 108 TAILLGAALALAEHKDNLPGTVRLIFQPAEEGG-----G-GAKAMIE--------------D-----------GVF---- 152 (392)
T ss_pred HHHHHHHHHHHHhhhhhCCcEEEEEeccccccc-----c-cHHHHHh--------------c-----------CCc----
Confidence 356788999999986678999999999999983 2 7665532 1 321
Q ss_pred CcchhhccCCC-ceEEEEeecccc-cccccCCCceEEEEe--eecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHH
Q 043727 85 DLSSVFLKKGS-YSAFVELQIEQG-LILEEEGTSIVIVTA--IAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 85 ~~~~~~~~~~~-v~~~~~~Hie~g-~~le~~~~~~gvv~~--~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~ 157 (275)
.+ +|+++++|++++ |. ..+++..+ +.+...|+++|+|+++|+ +.|+.+ +.+++.++..
T Consensus 153 ---------~~~vD~v~g~H~~p~~~~-----g~v~~~~G~~~aa~d~~~i~~~GkggH~-a~Ph~~~d~i~aa~~~v~~ 217 (392)
T COG1473 153 ---------DDFVDAVFGLHPGPGLPV-----GTVALRPGALMAAADEFEITFKGKGGHA-AAPHLGIDALVAAAQLVTA 217 (392)
T ss_pred ---------cccccEEEEecCCCCCCC-----ceEEeecccceeecceEEEEEEeCCccc-CCcccccCHHHHHHHHHHH
Confidence 13 899999999877 42 12222222 678899999999999999 589998 9999999999
Q ss_pred HHHHHHhhCC--CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecC
Q 043727 158 VEKHVLESGS--IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQ 232 (275)
Q Consensus 158 l~~~~~~~~~--~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~ 232 (275)
|+.+..+.-. +..++++|++++| ++.|||||++++.++ ++.+.++.+.++|+++++.+|..+|+++ ++++...
T Consensus 218 lq~ivsr~~~p~~~~vv~vg~~~aG-~a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~-ei~~~~~ 295 (392)
T COG1473 218 LQTIVSRNVDPLDSAVVTVGKIEAG-TAANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEA-EIDYERG 295 (392)
T ss_pred HHHHHhcccCCccCeEEEEEEecCC-CcCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEecCC
Confidence 9998876431 3479999999985 788999999999888 8999999999999999999999999999 9999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-C---cccc-CCCCcchHHhhhcc
Q 043727 233 DPPALSDRSIILEAEVALKELNL-T---YKFM-ISRAYHDSPFMARY 274 (275)
Q Consensus 233 ~p~~~~d~~l~~~~~~~~~~~g~-~---~~~~-~~~~g~Da~~~~~~ 274 (275)
+|++.||+.+.+.+++++++... . .... .+.+|+|+++|++.
T Consensus 296 ~p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsEDf~~~~~~ 342 (392)
T COG1473 296 YPPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGSEDFGYYLEK 342 (392)
T ss_pred CCCccCCHHHHHHHHHHHHHhccccceecccCCCCCccchHHHHHHh
Confidence 99999999999999999998642 2 2223 34589999999865
No 11
>PLN02693 IAA-amino acid hydrolase
Probab=99.95 E-value=1.4e-25 Score=206.74 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCC
Q 043727 4 LCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKH 83 (275)
Q Consensus 4 Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~ 83 (275)
++++++.+++.|++.+.+++++|.|++++|||+ +.|++.+... |..
T Consensus 140 ~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~------~~Ga~~~i~~-------------------------g~~--- 185 (437)
T PLN02693 140 HVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG------LSGAKKMREE-------------------------GAL--- 185 (437)
T ss_pred HHHHHHHHHHHHHhCcccCCceEEEEEEEcccc------hhhHHHHHHC-------------------------CCC---
Confidence 688999999999998876789999999999995 2477766321 111
Q ss_pred CCcchhhccCCCceEEEEeecccccccccCCCceEEEE-----eeecceEEEEEEEecCCCCCcchhhH---HHHHHHHH
Q 043727 84 NDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVT-----AIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVA 155 (275)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~-----~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i 155 (275)
.++++++..|.++.. +.|.+. .++|..||+|+++|+++|++ .|+.| |.++++++
T Consensus 186 ----------~~~~~iig~h~~p~~-------~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa-~P~~G~nAI~~aa~~i 247 (437)
T PLN02693 186 ----------KNVEAIFGIHLSPRT-------PFGKAASRAGSFMAGAGVFEAVITGKGGHAA-IPQHTIDPVVAASSIV 247 (437)
T ss_pred ----------CCCCEEEEEecCCCC-------CCeeEEeccCcccccceEEEEEEEcccccCC-CCCCCcCHHHHHHHHH
Confidence 134678888987642 122221 25789999999999999996 79988 99999999
Q ss_pred HHHHHHHHhhC-C-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Q 043727 156 LAVEKHVLESG-S-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIV 230 (275)
Q Consensus 156 ~~l~~~~~~~~-~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~ 230 (275)
.+|+++..+.. + +..++|+|.|++ |.++|+||++|++++| .+. .+.+.++|++++++++..+++++ ++++.
T Consensus 248 ~~l~~~~~~~~~~~~~~ti~vg~i~G-G~~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~-e~~~~ 323 (437)
T PLN02693 248 LSLQQLVSRETDPLDSKVVTVSKVNG-GNAFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNA-SVNLT 323 (437)
T ss_pred HHHHHHhcccCCCCCCcEEEEEEEEc-CCCCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcE-EEEEe
Confidence 99998754321 1 457999999997 4799999999999999 443 46899999999999888889888 87764
Q ss_pred c----CCCCCCCCHHHHHHHHHHHHHh-CCCcc--ccCCCCcchHHhhhc
Q 043727 231 N----QDPPALSDRSIILEAEVALKEL-NLTYK--FMISRAYHDSPFMAR 273 (275)
Q Consensus 231 ~----~~p~~~~d~~l~~~~~~~~~~~-g~~~~--~~~~~~g~Da~~~~~ 273 (275)
. .+|++.||+++++.+++++++. |.+.. ..+.++++|++||++
T Consensus 324 ~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~gseDf~~~~~ 373 (437)
T PLN02693 324 PNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMGSEDFSYFAE 373 (437)
T ss_pred ecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCceechHHHHHH
Confidence 2 4577889999999999999984 75532 345678999999975
No 12
>PRK07338 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=205.40 Aligned_cols=215 Identities=17% Similarity=0.154 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||. |+.|++.+.... . .+
T Consensus 132 gg~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~g~~~~~~~~-----~---~~------------------ 180 (402)
T PRK07338 132 GGIVVMLAALLAFERSPLADKLGYDVLINPDEEI-----GSPASAPLLAEL-----A---RG------------------ 180 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEECCccc-----CChhhHHHHHHH-----h---cc------------------
Confidence 4799999999999999988889999999999997 456787664311 0 00
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+ +.+|.|++ .....++.+++|..|++|+++|+++|+|..|+.+ |.++++++.+|+
T Consensus 181 -------------~~--~~i~~ep~------~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~~l~ 239 (402)
T PRK07338 181 -------------KH--AALTYEPA------LPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELALALH 239 (402)
T ss_pred -------------Cc--EEEEecCC------CCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHHHHH
Confidence 00 12333332 1112356788999999999999999998668877 999999999998
Q ss_pred HHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC
Q 043727 160 KHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236 (275)
Q Consensus 160 ~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~ 236 (275)
++.... +..++|+|.|++ |.+.|+||++|++++| .+.+..+++.++|++++++.+..+++++ +++....+||+
T Consensus 240 ~l~~~~--~~~t~~vg~i~g-G~~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~-~~~~~~~~~p~ 315 (402)
T PRK07338 240 ALNGQR--DGVTVNVAKIDG-GGPLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQRHGVSL-HLHGGFGRPPK 315 (402)
T ss_pred hhhccC--CCcEEEEEEEec-CCCCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccccCCCeEE-EEEccccCCCC
Confidence 865432 357999999997 4799999999999999 7889999999999999988776678888 77654456665
Q ss_pred C---CCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 237 L---SDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~---~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
. .++++++.++++++.+|.++....+++++|++++..
T Consensus 316 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~g~tDa~~~~~ 355 (402)
T PRK07338 316 PIDAAQQRLFEAVQACGAALGLTIDWKDSGGVCDGNNLAA 355 (402)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCcccccCCccchHHHHhh
Confidence 4 345799999998888888776677889999999864
No 13
>PLN02280 IAA-amino acid hydrolase
Probab=99.94 E-value=2.8e-25 Score=206.28 Aligned_cols=218 Identities=13% Similarity=0.154 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCC
Q 043727 4 LCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKH 83 (275)
Q Consensus 4 Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~ 83 (275)
+++++|.+++.|++.+.+++++|.|++++|||. + .|++.+... |..
T Consensus 190 ~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~-----g-~Ga~~li~~-------------------------g~~--- 235 (478)
T PLN02280 190 HVAMLLGAAKILKSREHLLKGTVVLLFQPAEEA-----G-NGAKRMIGD-------------------------GAL--- 235 (478)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEecccccc-----c-chHHHHHHC-------------------------CCC---
Confidence 678888899999988878899999999999997 3 388776431 111
Q ss_pred CCcchhhccCCCceEEEEeecccccccccCC---CceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHH
Q 043727 84 NDLSSVFLKKGSYSAFVELQIEQGLILEEEG---TSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~---~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~ 157 (275)
.++++++.+|+..+ ++.+ .+.+ ..++|..|++|+++||++|++ .|+.| |.++++++..
T Consensus 236 ----------~~~d~~~~~h~~~~---~p~g~ig~~~~--~~~~G~~~~~I~v~Gk~aHas-~P~~G~NAI~~aa~li~~ 299 (478)
T PLN02280 236 ----------DDVEAIFAVHVSHE---HPTAVIGSRPG--PLLAGCGFFRAVISGKKGRAG-SPHHSVDLILAASAAVIS 299 (478)
T ss_pred ----------cCCCEEEEEecCCC---CCCceeEeccc--ccccceeEEEEEEECcchhcC-CcccCcCHHHHHHHHHHH
Confidence 13578899998422 1111 1111 235699999999999999986 79988 9999999999
Q ss_pred HHHHHHhhC-C-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe--
Q 043727 158 VEKHVLESG-S-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIV-- 230 (275)
Q Consensus 158 l~~~~~~~~-~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~-- 230 (275)
++++..+.. + +..++|+|.|++ |.+.|+||++|++++| ++.+..+++.++|+++++..+..+|+++ ++++.
T Consensus 300 l~~l~~r~~~~~~~~tvnvg~I~G-G~~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~-~v~~~~~ 377 (478)
T PLN02280 300 LQGIVSREANPLDSQVVSVTTMDG-GNNLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSA-TVDFFEK 377 (478)
T ss_pred HHHHHhcccCCCCCcEEEEEEEEc-cCCCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEEecc
Confidence 998764321 1 357899999997 4799999999999999 7889999999999999999888899988 88752
Q ss_pred --cCCCCCCCCHHHHHHHHHHHHHh-CCCc--cccCCCCcchHHhhhc
Q 043727 231 --NQDPPALSDRSIILEAEVALKEL-NLTY--KFMISRAYHDSPFMAR 273 (275)
Q Consensus 231 --~~~p~~~~d~~l~~~~~~~~~~~-g~~~--~~~~~~~g~Da~~~~~ 273 (275)
..+||+.+++++++.+++++.+. |.+. ...+.++++|+++|.+
T Consensus 378 ~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~~~~ 425 (478)
T PLN02280 378 QNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSFYSQ 425 (478)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHHHHh
Confidence 24789999999999999998765 6542 2235678999999974
No 14
>PRK07473 carboxypeptidase; Provisional
Probab=99.94 E-value=6.7e-25 Score=199.00 Aligned_cols=210 Identities=18% Similarity=0.127 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|+++|++.+..++.+|.|++++|||. |+.|++.+.... . ...
T Consensus 115 gglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~-----g~~g~~~~~~~~-----~---~~~----------------- 164 (376)
T PRK07473 115 GGNYLALEAIRQLARAGITTPLPITVLFTPDEEV-----GTPSTRDLIEAE-----A---ARN----------------- 164 (376)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCccc-----CCccHHHHHHHh-----h---ccC-----------------
Confidence 4799999999999999987778999999999997 567888775311 0 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
++. + +.|+++...+++.+++|..|++|+++|+++|+|+.|+.| |..+++++.+|+
T Consensus 165 --------------d~~--i------v~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~ 222 (376)
T PRK07473 165 --------------KYV--L------VPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAID 222 (376)
T ss_pred --------------CEE--E------EeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHH
Confidence 111 1 223333334688899999999999999999998789988 999999999998
Q ss_pred HHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC
Q 043727 160 KHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236 (275)
Q Consensus 160 ~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~ 236 (275)
++.. ...++|+|.|++| .+.|+||++|++++| .+.+.++++.+++.+.++ ...++++ +++.....|++
T Consensus 223 ~~~~----~~~~~~vg~i~gg-~~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~---~~~~~~~-~~~~~~~~~~~ 293 (376)
T PRK07473 223 AMTT----EDCTFSVGIVHGG-QWVNCVATTCTGEALSMAKRQADLDRGVARMLALSG---TEDDVTF-TVTRGVTRPVW 293 (376)
T ss_pred HhcC----CCceEeEeeEEcC-CCCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC---cCCCeEE-EEEccccCCCC
Confidence 7632 3568999999975 689999999999998 455556666555554433 2356666 66544456666
Q ss_pred CCC---HHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 237 LSD---RSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~~d---~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
..+ +++++.++++++.+|.+.....++++||+++|+.
T Consensus 294 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~g~tDa~~~~~ 333 (376)
T PRK07473 294 EPDAGTMALYEKARAIAGQLGLSLPHGSAGGGSDGNFTGA 333 (376)
T ss_pred CCChhHHHHHHHHHHHHHHcCCCCccccCccccHhhhHHh
Confidence 432 4688999888888888777777889999999874
No 15
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.93 E-value=9.9e-25 Score=198.06 Aligned_cols=215 Identities=19% Similarity=0.157 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||. |+.|++.+.... + ..+
T Consensus 103 gg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~-----g~~G~~~~~~~~-----~--~~~------------------ 152 (377)
T PRK08588 103 SGLAALVIAMIELKEQGQLLNGTIRLLATAGEEV-----GELGAKQLTEKG-----Y--ADD------------------ 152 (377)
T ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEEEccccc-----CchhHHHHHhcC-----c--cCC------------------
Confidence 4799999999999999988899999999999997 467888775321 0 001
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
++.++ +.++.+ ..++.+++|..+++|+++|+++|+| .|+.| |..+++++..++
T Consensus 153 -------------~d~~i--------~~ep~~--~~i~~~~~G~~~~~i~~~G~~~Hss-~p~~g~nAi~~~~~~l~~l~ 208 (377)
T PRK08588 153 -------------LDALI--------IGEPSG--HGIVYAHKGSMDYKVTSTGKAAHSS-MPELGVNAIDPLLEFYNEQK 208 (377)
T ss_pred -------------CCEEE--------EecCCC--ceeEEEEEEEEEEEEEEEeechhcc-CCccccCHHHHHHHHHHHHH
Confidence 11111 111221 3467889999999999999999996 78888 999999999998
Q ss_pred HHHHhhC-----CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEec
Q 043727 160 KHVLESG-----SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVN 231 (275)
Q Consensus 160 ~~~~~~~-----~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~ 231 (275)
++..+.. .+..+++++.|++ |...|+||++|++++| .+.++.+++.++|++++++.+...++++ +++...
T Consensus 209 ~~~~~~~~~~~~~~~~t~~v~~i~g-G~~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~-~~~~~~ 286 (377)
T PRK08588 209 EYFDSIKKHNPYLGGLTHVVTIING-GEQVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQL-SLDIYS 286 (377)
T ss_pred HHhhhhcccCccCCCCceeeeEEeC-CCcCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCce-EEEEec
Confidence 8654321 1357899999997 4789999999999999 6778899999999999988776677888 888777
Q ss_pred CCCCCCC--CHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 232 QDPPALS--DRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 232 ~~p~~~~--d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
.+||+.+ |+++++.+++++++ .|.++.....++++|+++|.+
T Consensus 287 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~ 331 (377)
T PRK08588 287 NHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATDASSFLK 331 (377)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCCCcccHHHHhh
Confidence 7777765 46899999999987 576555566788999999863
No 16
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.93 E-value=1.5e-24 Score=195.69 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=165.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+ .++++|.|++++|||. |+.|++.|... .+ +
T Consensus 103 ~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~-----g~~G~~~~~~~-----~~----~------------------ 149 (361)
T TIGR01883 103 AGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEEL-----GLIGMRLFDES-----KI----T------------------ 149 (361)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccc-----CchhHhHhChh-----hc----C------------------
Confidence 58999999999999987 4778999999999997 56788876320 00 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.-+.+|+++. .....++.+++|..|++++++|+++|+|+.|+.| +..+++++.+++
T Consensus 150 ---------------~~~~~~~~~~------~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~ 208 (361)
T TIGR01883 150 ---------------AAYGYCLDAP------GEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMR 208 (361)
T ss_pred ---------------cceeEEEeCC------CCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhcc
Confidence 0122333321 1112366788999999999999999987789988 999999998886
Q ss_pred HHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC
Q 043727 160 KHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236 (275)
Q Consensus 160 ~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~ 236 (275)
.. ..+ ...++++|.+++| .+.|+||++|++.+| .+.+..+.+.++|++.+++.+..+++++ +++....++++
T Consensus 209 ~~--~~~-~~~~~~i~~i~gG-~~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~ 283 (361)
T TIGR01883 209 LG--RID-EETTANIGSFSGG-VNTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATL-EEETRLIYEGF 283 (361)
T ss_pred cc--CCC-CccccccceeecC-CccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEE-EEEEEeccccc
Confidence 42 112 3467899999974 799999999999999 7778889999999999998888889888 88766666766
Q ss_pred --CCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 237 --LSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 237 --~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
..|.++++.++++++++|.++....+++++|+++|..
T Consensus 284 ~~~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tD~~~~~~ 322 (361)
T TIGR01883 284 KIHPQHPLMNIFKKAAKKIGLKTSEIFSGGGSDANVLNE 322 (361)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCcEEEecCcccHHHHHhh
Confidence 3467899999999988887765667789999999874
No 17
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.93 E-value=7.1e-24 Score=191.55 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCC
Q 043727 4 LCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKH 83 (275)
Q Consensus 4 Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~ 83 (275)
++++++.+++.|++.+.+++++|.|++++|||. + .|++.+.... .+ .
T Consensus 94 ~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----~-~G~~~~~~~~----~~---~-------------------- 140 (363)
T TIGR01891 94 HTAILLGTAKLLKKLADLLEGTVRLIFQPAEEG-----G-GGATKMIEDG----VL---D-------------------- 140 (363)
T ss_pred HHHHHHHHHHHHHhchhhCCceEEEEEeecCcC-----c-chHHHHHHCC----CC---C--------------------
Confidence 577889999999988777789999999999997 2 5887764311 00 0
Q ss_pred CCcchhhccCCCceEEEEeecccccccccCC-CceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 84 NDLSSVFLKKGSYSAFVELQIEQGLILEEEG-TSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 84 ~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~-~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+++..+-.|-+..- +.+ ........++|..|++|+++|+++|+ +.|+.+ +.++++++.+++
T Consensus 141 -----------~~d~~i~~e~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~G~~~Ha-s~p~~g~nAi~~~~~~i~~l~ 205 (363)
T TIGR01891 141 -----------DVDAILGLHPDPSI---PAGTVGLRPGTIMAAADKFEVTIHGKGAHA-ARPHLGRDALDAAAQLVVALQ 205 (363)
T ss_pred -----------CcCEEEEECCCCCC---CCeEEEECCCcceeecceEEEEEEeecccc-cCcccccCHHHHHHHHHHHHH
Confidence 11222222221100 000 00112235789999999999999999 588877 999999999998
Q ss_pred HHHHhh-CC-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Q 043727 160 KHVLES-GS-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP 234 (275)
Q Consensus 160 ~~~~~~-~~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p 234 (275)
++..+. .. ...++|+|.|++| .+.|+||++|++++| .+.+..+++.++|++++++.+...++++ +++....+|
T Consensus 206 ~~~~~~~~~~~~~~~~i~~i~gG-~~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~v-e~~~~~~~p 283 (363)
T TIGR01891 206 QIVSRNVDPSRPAVVTVGIIEAG-GAPNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKV-ELNYDRGLP 283 (363)
T ss_pred HHhhccCCCCCCcEEEEEEEEcC-CCCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeE-EEEEecCCC
Confidence 865332 11 2468999999975 699999999999999 7888999999999999999888889999 988777777
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCC-cc--ccCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKEL-NLT-YK--FMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~-g~~-~~--~~~~~~g~Da~~~~~ 273 (275)
+..+|+++++.++++++++ |.. .. ...++||||++++++
T Consensus 284 ~~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~Da~~~~~ 326 (363)
T TIGR01891 284 AVTNDPALTQILKEVARHVVGPENVAEDPEVTMGSEDFAYYSQ 326 (363)
T ss_pred CccCCHHHHHHHHHHHHHhcCccceeccCCCCccccCHHHHHH
Confidence 7777899999999999984 632 22 345889999999875
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.93 E-value=2.8e-24 Score=197.19 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+.+++++|.|++++|||. |+.|++.+.... . .+
T Consensus 139 gg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~G~~~~~~~~-----~---~~------------------ 187 (410)
T PRK06133 139 GGVAVILHALKILQQLGFKDYGTLTVLFNPDEET-----GSPGSRELIAEL-----A---AQ------------------ 187 (410)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccc-----CCccHHHHHHHH-----h---cc------------------
Confidence 4799999999999999988889999999999997 467888775311 0 00
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+..+-.| ++.....++.+++|..|++|+++|+++|+|+.|+.+ |..+++++..++
T Consensus 188 -------------~d~~i~~e--------p~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~ 246 (410)
T PRK06133 188 -------------HDVVFSCE--------PGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLR 246 (410)
T ss_pred -------------CCEEEEeC--------CCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHH
Confidence 12222222 111112356788999999999999999987789887 999999999888
Q ss_pred HHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC
Q 043727 160 KHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236 (275)
Q Consensus 160 ~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~ 236 (275)
++.... ...+++++.|++ |++.|+||++|++.+| .+.+..+++.++|++++++ +..+++++ +++....+||+
T Consensus 247 ~~~~~~--~~~t~~~~~i~g-G~~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~-~~~~~~~~-~~~~~~~~~~~ 321 (410)
T PRK06133 247 DLGDPA--KGTTLNWTVAKA-GTNRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKN-KLVPDTEV-TLRFERGRPPL 321 (410)
T ss_pred hccCCC--CCeEEEeeEEEC-CCCCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhc-cCCCCeEE-EEEeccccCCc
Confidence 754321 356899999997 4799999999999999 7889999999999999987 34567788 88776678887
Q ss_pred CCCH---HHHHHHHHHHHHhCCCccc--cCCCCcchHHhhhc
Q 043727 237 LSDR---SIILEAEVALKELNLTYKF--MISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~~d~---~l~~~~~~~~~~~g~~~~~--~~~~~g~Da~~~~~ 273 (275)
.+++ .+++.++++.++.|.++.. ..+++++|++++..
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~tDa~~~~~ 363 (410)
T PRK06133 322 EANAASRALAEHAQGIYGELGRRLEPIDMGTGGGTDAAFAAG 363 (410)
T ss_pred ccCcchHHHHHHHHHHHHHcCCCccccccCCCCCchHHHHHh
Confidence 6543 5777777777777765433 55788999999864
No 19
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.93 E-value=1.8e-24 Score=196.26 Aligned_cols=216 Identities=18% Similarity=0.202 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|++++.|++.+.+++++|.|++++|||. |+.|++.+.... . .+
T Consensus 108 ~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-----g~~G~~~~~~~~-----~---~~------------------ 156 (375)
T TIGR01910 108 GGLVALLYALKAIREAGIKPNGNIILQSVVDEES-----GEAGTLYLLQRG-----Y---FK------------------ 156 (375)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccEEEEEEcCccc-----CchhHHHHHHcC-----C---CC------------------
Confidence 4799999999999999988899999999999997 567998875421 0 00
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+.+..+ +.++++ ...++.+++|..+++|+++|+++|+| .|+.+ |.++++++.+|+
T Consensus 157 ------------~~d~~i--------~~~~~~-~~~v~~~~~G~~~~~i~~~G~~~Hs~-~p~~g~nAi~~~~~~l~~l~ 214 (375)
T TIGR01910 157 ------------DADGVL--------IPEPSG-GDNIVIGHKGSIWFKLRVKGKQAHAS-FPQFGVNAIMKLAKLITELN 214 (375)
T ss_pred ------------CCCEEE--------ECCCCC-CCceEEEecceEEEEEEEeeeecccC-CCCcchhHHHHHHHHHHHHH
Confidence 011111 111221 23567889999999999999999997 68777 999999999998
Q ss_pred HHHHhhC--------CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 043727 160 KHVLESG--------SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFK 228 (275)
Q Consensus 160 ~~~~~~~--------~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~ 228 (275)
++..... ....+++++.|++ |+..|+||++|++++| .+.++.+.+.++|++++++.+..+++++ +++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~t~~i~~i~g-G~~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~ 292 (375)
T TIGR01910 215 ELEEHIYARNSYGFIPGPITFNPGVIKG-GDWVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLY-ENE 292 (375)
T ss_pred HHHHHhhhcccccccCCCccccceeEEC-CCCcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHh-hCC
Confidence 8754311 1346899999997 4799999999999999 6778999999999999998877778887 775
Q ss_pred EecCCC---CCCCCHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 229 IVNQDP---PALSDRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 229 ~~~~~p---~~~~d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
....+| ...+++++++.+++++++ .|.++....+++++|+++|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~ 341 (375)
T TIGR01910 293 PVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTDARFLRK 341 (375)
T ss_pred CeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchhHHHHHH
Confidence 544343 345678899999999987 477666666788999999975
No 20
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.91 E-value=7.1e-23 Score=186.91 Aligned_cols=212 Identities=19% Similarity=0.190 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|++++.|++.+ +++|.|++++|||. |+.|++++..... . +.+
T Consensus 117 ~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~-----g~~G~~~~~~~~~----~----~~d---------------- 164 (394)
T PRK08651 117 GGIAALLAAFERLDPAG---DGNIELAIVPDEET-----GGTGTGYLVEEGK----V----TPD---------------- 164 (394)
T ss_pred hHHHHHHHHHHHHHhcC---CCCEEEEEecCccc-----cchhHHHHHhccC----C----CCC----------------
Confidence 47999999999999876 68999999999997 4578988754211 0 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.++ +.++.+. ..++.+++|..+++|+++|+++|++ .|+.+ +.++++++.+|+
T Consensus 165 --------------~~i---------~~~~~~~-~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nAi~~~~~~i~~l~ 219 (394)
T PRK08651 165 --------------YVI---------VGEPSGL-DNICIGHRGLVWGVVKVYGKQAHAS-TPWLGINAFEAAAKIAERLK 219 (394)
T ss_pred --------------EEE---------EecCCCC-CceEEecccEEEEEEEEEEeccccC-CCccccCHHHHHHHHHHHHH
Confidence 011 0111221 1366789999999999999999997 68777 999999999997
Q ss_pred HHHHhh------C---CCCeEEEEEE--EEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEE
Q 043727 160 KHVLES------G---SIDTVGTVGI--LELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLS 225 (275)
Q Consensus 160 ~~~~~~------~---~~~~~~tvg~--i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~ 225 (275)
+...+. . ....++++|. |++ |++.|+||++|++.+| .+.+..+++.++|++++++++..+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~i~g-G~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~- 297 (394)
T PRK08651 220 SSLSTIKSKYEYDDERGAKPTVTLGGPTVEG-GTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEV- 297 (394)
T ss_pred HHHHhhhccccccccccCCCceeecceeeeC-CCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCe-
Confidence 653211 0 1245789999 886 5799999999999999 7778899999999999999888889888
Q ss_pred EEEEecCCCCCCCC--HHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 226 EFKIVNQDPPALSD--RSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 226 ~i~~~~~~p~~~~d--~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+++....+||..++ .++++.+++++++ +|.+.....+++++|+++|.+
T Consensus 298 ~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~~~~~~~~g~tD~~~~~~ 348 (394)
T PRK08651 298 EFEITPFSEAFVTDPDSELVKALREAIREVLGVEPKKTISLGGTDARFFGA 348 (394)
T ss_pred eEEEecccCCccCCCCCHHHHHHHHHHHHHhCCCCceeeecCcccHHHHhh
Confidence 88876667776654 4799999999988 587665566778999999875
No 21
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.91 E-value=1.7e-22 Score=186.14 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++++.+++++|.|++++|||. |+.|++.+... |+.++
T Consensus 137 gg~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~-----g~~G~~~~~~~-------------------------~~~~d 186 (422)
T PRK06915 137 GGNVALLLAMEALIESGIELKGDVIFQSVIEEES-----GGAGTLAAILR-------------------------GYKAD 186 (422)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeccccc-----CCcchHHHHhc-------------------------CcCCC
Confidence 3789999999999999988889999999999997 34576654210 11111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
..+ +.|+.+ ..++.+++|..|++|+++|+++|+| .|+.| |.++++++.+|+
T Consensus 187 ---------------~~i--------~~ep~~--~~i~~~~~G~~~~~i~v~G~~~H~s-~p~~g~nAi~~~~~~~~~l~ 240 (422)
T PRK06915 187 ---------------GAI--------IPEPTN--MKFFPKQQGSMWFRLHVKGKAAHGG-TRYEGVSAIEKSMFVIDHLR 240 (422)
T ss_pred ---------------EEE--------ECCCCC--ccceeecccEEEEEEEEEeeccccC-CCCcCcCHHHHHHHHHHHHH
Confidence 111 011222 2356789999999999999999996 78888 999999999998
Q ss_pred HHHHhhC-----C------CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhc----C
Q 043727 160 KHVLESG-----S------IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNR----G 221 (275)
Q Consensus 160 ~~~~~~~-----~------~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~----g 221 (275)
.+..... + .+.++|+|.|++ |...|+||++|++.+| .+.++.+++.++|++.+++++... +
T Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~g-G~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~~~~~~~~ 319 (422)
T PRK06915 241 KLEEKRNDRITDPLYKGIPIPIPINIGKIEG-GSWPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELNDVDEWFVE 319 (422)
T ss_pred HHHHHhccccCCCcccCCCCCceEeEEEeeC-CCCCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHhccChhhhc
Confidence 8754211 0 135899999997 4799999999999999 777889999999999998876431 2
Q ss_pred CCEEEEEEec-CCC--CCCCCHHHHHHHHHHHHHh-CCCccccCCCCcchHHhhhc
Q 043727 222 VTLSEFKIVN-QDP--PALSDRSIILEAEVALKEL-NLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 222 ~~~~~i~~~~-~~p--~~~~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~~~~~ 273 (275)
..+ +++... .++ ++.+|.++++.++++++++ |.++....++++||+++|.+
T Consensus 320 ~~~-~v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~g~tD~~~~~~ 374 (422)
T PRK06915 320 HPV-EVEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEASPWGTDGGLLTQ 374 (422)
T ss_pred CCc-eEEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeeceeeeeccHHHHhc
Confidence 334 444332 122 3456789999999999985 76655566788999999975
No 22
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.91 E-value=2.4e-22 Score=185.29 Aligned_cols=219 Identities=14% Similarity=0.107 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||.+ +.-|.+++...- . +.+
T Consensus 126 g~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g----~~~g~~~l~~~~-----~-------------------~~~- 176 (427)
T PRK13013 126 GGLAASIIAAEAFLAVYPDFAGSIEISGTADEESG----GFGGVAYLAEQG-----R-------------------FSP- 176 (427)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccC----ChhHHHHHHhcC-----C-------------------ccc-
Confidence 47899999999999998888899999999999973 222444443210 0 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
...++.+ +.++.+. ..++.+++|..+++|+++|+++|++ .|+.| |..+++++.+|+
T Consensus 177 -----------~~~d~~i--------~~ep~~~-~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~~~~~~l~~l~ 235 (427)
T PRK13013 177 -----------DRVQHVI--------IPEPLNK-DRICLGHRGVWWAEVETRGRIAHGS-MPFLGDSAIRHMGAVLAEIE 235 (427)
T ss_pred -----------cCCCEEE--------EecCCCC-CceEEeeeeEEEEEEEEEccccccC-CCCcCcCHHHHHHHHHHHHH
Confidence 0112222 1112221 1366789999999999999999986 78887 999999999997
Q ss_pred HHHHhh--------C-----CCCeEEEEEEEEeeCCCC----------ceeCceEEEEEe---CCHhHHHHHHHHHHHHH
Q 043727 160 KHVLES--------G-----SIDTVGTVGILELHSGAI----------NSIPSKSHLEID---IDEKRRKTVIEKIHQSA 213 (275)
Q Consensus 160 ~~~~~~--------~-----~~~~~~tvg~i~~g~~~~----------NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~ 213 (275)
+...+. . ....++|++.|++| ... |+||++|++++| .+.+..++++++|++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG-~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i 314 (427)
T PRK13013 236 ERLFPLLATRRTAMPVVPEGARQSTLNINSIHGG-EPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALL 314 (427)
T ss_pred HHhhhhhhcccccCCCCCcccCCCceeeeEEeCC-CccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 653210 0 01468999999974 455 999999999999 67788999999999999
Q ss_pred HHHHHh-cCCCEEEEEEecCCCCCCCC--HHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 214 ITIAKN-RGVTLSEFKIVNQDPPALSD--RSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 214 ~~~~~~-~g~~~~~i~~~~~~p~~~~d--~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
++++.. .++++ +++....+||+.++ .++++.+.+++++ +|.++....+++++|++++.+
T Consensus 315 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~g~~D~~~~~~ 377 (427)
T PRK13013 315 ERLKRARPGFAY-EIRDLFEVLPTMTDRDAPVVRSVAAAIERVLGRQADYVVSPGTYDQKHIDR 377 (427)
T ss_pred HHHHhhCCCcee-EEEEcccCCcccCCCCCHHHHHHHHHHHHhhCCCCceeecCccCCHHHHHh
Confidence 887653 36677 77655567776654 4899999999887 577666667788999999865
No 23
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.90 E-value=4.5e-22 Score=180.46 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+.+++++|.|++++|||.+ +..|++.+...+. ..+..+
T Consensus 102 gg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~----~~~G~~~~~~~~~---------------------~~~~~~- 155 (375)
T PRK13009 102 GSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGP----AINGTVKVLEWLK---------------------ARGEKI- 155 (375)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccc----cccCHHHHHHHHH---------------------HcCcCC-
Confidence 37899999999999998888899999999999973 4468887743110 001111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+..+-. |+.. . ......++.+++|..+++|+++|+++|++ .|+.+ +..+++++.+|+
T Consensus 156 --------------d~~i~~--ep~~-~--~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~-~p~~g~nAi~~~~~~l~~l~ 215 (375)
T PRK13009 156 --------------DYCIVG--EPTS-T--ERLGDVIKNGRRGSLTGKLTVKGVQGHVA-YPHLADNPIHLAAPALAELA 215 (375)
T ss_pred --------------CEEEEc--CCCc-c--cCCCCeEEEecceEEEEEEEEEecCcccC-CCCcccCHHHHHHHHHHHHH
Confidence 111111 1100 0 00011356788999999999999999996 79887 999999999998
Q ss_pred HHHHhhC---CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCC
Q 043727 160 KHVLESG---SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQD 233 (275)
Q Consensus 160 ~~~~~~~---~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~ 233 (275)
....... ..+.+++++.|++|+...|+||++|++++| .+.++.+++.++|++.+++ .++++ ++++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~i~~i~~G~~~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~----~~~~~-~~~~~~~~ 290 (375)
T PRK13009 216 ATEWDEGNEFFPPTSLQITNIDAGTGATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDK----HGLDY-TLEWTLSG 290 (375)
T ss_pred hhhccCCCccCCCceEEEEEEecCCCCCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHh----cCCCe-EEEEecCC
Confidence 7532111 134689999999754478999999999999 6778888888888887763 47778 88765555
Q ss_pred CCCCC-CHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 234 PPALS-DRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 p~~~~-d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+|... +.++++.+++++++ .|.++....+++++|++++.+
T Consensus 291 ~p~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~tda~~~~~ 332 (375)
T PRK13009 291 EPFLTPPGKLVDAVVAAIEAVTGITPELSTSGGTSDARFIAD 332 (375)
T ss_pred CcccCCCcHHHHHHHHHHHHHhCCCceeeccCCCccHHHHHH
Confidence 55543 46899999999887 577766667788999999865
No 24
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.90 E-value=1.2e-22 Score=182.47 Aligned_cols=200 Identities=18% Similarity=0.211 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+. +|.|++++|||. |+.|++++... ++.+
T Consensus 95 gg~aa~l~a~~~l~~~~~----~i~~~~~~dEE~-----g~~G~~~l~~~-------------------------~~~~- 139 (346)
T PRK00466 95 GPLISMIIAAWLLNEKGI----KVMVSGLADEES-----TSIGAKELVSK-------------------------GFNF- 139 (346)
T ss_pred hHHHHHHHHHHHHHHcCC----CEEEEEEcCccc-----CCccHHHHHhc-------------------------CCCC-
Confidence 478999999999999873 589999999997 45688877431 0100
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH-HHHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN-SLAAAEVALAVEKH 161 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g-i~aaa~~i~~l~~~ 161 (275)
|.++ +.|+.+ ...++.+++|..|++|+++|+++|+| .|... |.++++++.++.++
T Consensus 140 --------------d~~i--------~~ep~~-~~~i~~~~kG~~~~~i~v~G~~~Has-~p~~nAi~~~~~~l~~l~~~ 195 (346)
T PRK00466 140 --------------KHII--------VGEPSN-GTDIVVEYRGSIQLDIMCEGTPEHSS-SAKSNLIVDISKKIIEVYKQ 195 (346)
T ss_pred --------------CEEE--------EcCCCC-CCceEEEeeEEEEEEEEEEeeccccC-CCCcCHHHHHHHHHHHHHhc
Confidence 1110 112222 13477899999999999999999997 56666 99999999988754
Q ss_pred HHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCCC
Q 043727 162 VLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALS 238 (275)
Q Consensus 162 ~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~~ 238 (275)
.... +..++++|.|++ |++.|+||++|++++| .+.++.+++.++|++.+++ + +++....+||+..
T Consensus 196 ~~~~--~~~t~~~~~i~g-G~~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~------~---~~~~~~~~~~~~~ 263 (346)
T PRK00466 196 PENY--DKPSIVPTIIRA-GESYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQE------C---GLKIVDETPPVKV 263 (346)
T ss_pred cccC--CCCcceeeEEec-CCcCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHhh------C---cEeeccCCCCccc
Confidence 2211 356899999997 4799999999999999 6778888888888887754 3 3344445666544
Q ss_pred --CHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 239 --DRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 239 --d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.++++.+.+++++.|.++....++++||+++|.+
T Consensus 264 ~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tD~~~~~~ 300 (346)
T PRK00466 264 SINNPVVKALMRALLKQNIKPRLVRKAGTSDMNILQK 300 (346)
T ss_pred CCCCHHHHHHHHHHHHhCCCceEEecCCcCcHHHHHH
Confidence 57899999999998887766667788999999875
No 25
>PRK05469 peptidase T; Provisional
Probab=99.89 E-value=6.7e-22 Score=181.37 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++++..++++|.|++++|||. | .|++.+.- +.+ .
T Consensus 143 gglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~-----g-~Ga~~~~~-----~~~--------------------~-- 189 (408)
T PRK05469 143 AGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEI-----G-RGADKFDV-----EKF--------------------G-- 189 (408)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEEeccccc-----C-CCHHHhhh-----hhc--------------------C--
Confidence 4799999999999998766789999999999997 4 47766521 000 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+ +.+|+..++ .+ .+...++|..+|+|+++|+++|+++.|+.+ |.++++++..|+
T Consensus 190 -------------~~--~~~~~~~~~----~g---~~~~~~~g~~~~~i~v~Gk~~Ha~~~p~~g~nAi~~~~~~i~~l~ 247 (408)
T PRK05469 190 -------------AD--FAYTVDGGP----LG---ELEYENFNAASAKITIHGVNVHPGTAKGKMVNALLLAADFHAMLP 247 (408)
T ss_pred -------------Cc--EEEEecCCC----cc---eEEeccCceeEEEEEEeeecCCCCCCcccccCHHHHHHHHHHhCC
Confidence 01 122332221 11 244557899999999999999987778888 999999998887
Q ss_pred HHHHhhCC--CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhc-CCCEEEEEEecCC
Q 043727 160 KHVLESGS--IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNR-GVTLSEFKIVNQD 233 (275)
Q Consensus 160 ~~~~~~~~--~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~-g~~~~~i~~~~~~ 233 (275)
++...... ...++++|.|++ .|++|++++| .+.+..+.+.++|++++++++..+ ++++ ++++...+
T Consensus 248 ~~~~~~~~~~~~~~i~~g~i~g-------gp~~~~i~~diR~~~~e~~e~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 319 (408)
T PRK05469 248 ADETPETTEGYEGFYHLTSIKG-------TVEEAELSYIIRDFDREGFEARKALMQEIAKKVNAKYGEGRV-ELEIKDQY 319 (408)
T ss_pred CCCCCCCCCCceEEEEEEEEEE-------ccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCCeE-EEEEeehh
Confidence 64321110 123466776664 3899999999 788999999999999999998777 6778 77765433
Q ss_pred C----CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 234 P----PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 p----~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+ ++.+|+++++.++++++++|.+....++++++|+++|+.
T Consensus 320 ~~~~~~~~~~~~lv~~~~~a~~~~g~~~~~~~~~ggtD~~~~~~ 363 (408)
T PRK05469 320 YNMREKIEPHPHIVDLAKQAMEDLGIEPIIKPIRGGTDGSQLSF 363 (408)
T ss_pred hhhhhhhcCCHHHHHHHHHHHHHcCCCcEEecCCCcccHHHHhh
Confidence 2 467889999999999998887666667789999999874
No 26
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.89 E-value=8.4e-22 Score=180.08 Aligned_cols=222 Identities=19% Similarity=0.235 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++++.+++++|.|++++|||.+ +..|++++..... ..+ .
T Consensus 120 ~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g----~~~g~~~~~~~~~--~~~---~------------------- 171 (400)
T PRK13983 120 QGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETG----SKYGIQYLLKKHP--ELF---K------------------- 171 (400)
T ss_pred chHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccC----CcccHHHHHhhcc--ccc---C-------------------
Confidence 58999999999999999889999999999999962 2246777653210 000 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+.+..+-.+ .+ ++.+. .++.+++|..|++|+++|+++|+| .|+.| +..+++++..++
T Consensus 172 ------------~~d~~i~~~--~~---~~~~~--~i~~~~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 231 (400)
T PRK13983 172 ------------KDDLILVPD--AG---NPDGS--FIEIAEKSILWLKFTVKGKQCHAS-TPENGINAHRAAADFALELD 231 (400)
T ss_pred ------------CCCEEEEec--CC---CCCCc--eeEEeecceEEEEEEEEeEccccC-CCCCCCCHHHHHHHHHHHHH
Confidence 011111100 01 11111 256788999999999999999997 68887 999999999998
Q ss_pred H-HHHhhC-------CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 043727 160 K-HVLESG-------SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFK 228 (275)
Q Consensus 160 ~-~~~~~~-------~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~ 228 (275)
. +..... +...+++++.+.+|+...|+||++|++++| .+.++.+.+.++|++++++.+..++.++ +++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v-~~~ 310 (400)
T PRK13983 232 EALHEKFNAKDPLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKI-EVE 310 (400)
T ss_pred HHHHhhhcccccccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcce-eEE
Confidence 7 432221 012367778888754589999999999999 6778899999999999998777778888 777
Q ss_pred Eec-CCC--CCCCCHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 229 IVN-QDP--PALSDRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 229 ~~~-~~p--~~~~d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
... .++ ++..|.++++.+.+++++ .|.++....+++++|++++..
T Consensus 311 ~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~td~~~~~~ 359 (400)
T PRK13983 311 IVQREQAPPPTPPDSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRK 359 (400)
T ss_pred EeeccCCccCCCCCcHHHHHHHHHHHHhcCCCceeeeecCcHHHHHHHH
Confidence 644 333 456678899999999987 476666666788999998864
No 27
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.89 E-value=4.8e-21 Score=173.51 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|+++++.+++.|++.+.+++++|.|++++|||.+ +..|++.+... +. + .+..
T Consensus 99 gg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~----~~~G~~~~~~~------~~---~------------~~~~-- 151 (370)
T TIGR01246 99 GSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGT----AIDGTKKVVET------LM---A------------RDEL-- 151 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccC----CCcCHHHHHHH------HH---h------------cCCC--
Confidence 47899999999999988878899999999999973 33688876421 10 0 0110
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.|..+-. |++... ..+ ..++.+++|..|++++++|+++|++ .|+.+ +..++++++.|+
T Consensus 152 -------------~d~~i~~--ep~~~~-~~~--~~i~~~~~G~~~~~v~v~G~~~H~~-~p~~g~nAi~~~~~~i~~l~ 212 (370)
T TIGR01246 152 -------------IDYCIVG--EPSSVK-KLG--DVIKNGRRGSITGNLTIKGIQGHVA-YPHLANNPIHKAAPALAELT 212 (370)
T ss_pred -------------CCEEEEc--CCCCcc-cCC--ceEEEeeeEEEEEEEEEEccCcccC-CcccCCCHHHHHHHHHHHHh
Confidence 1122111 111100 001 1256788999999999999999996 78887 999999999887
Q ss_pred HHHHhhC---CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCC
Q 043727 160 KHVLESG---SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQD 233 (275)
Q Consensus 160 ~~~~~~~---~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~ 233 (275)
....... ..+.+++++.|++|....|+||++|++.+| .+.+..+++.++|++++++ +++++ +++....+
T Consensus 213 ~~~~~~~~~~~~~~t~~i~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~----~~~~~-~v~~~~~~ 287 (370)
T TIGR01246 213 AIKWDEGNEFFPPTSLQITNIHAGTGANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ----HGLDY-DLEWSLSG 287 (370)
T ss_pred hhhhccCCccCCCCceEeeeeecCCCCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH----cCCCE-EEEEecCC
Confidence 6532111 134689999999753468999999999999 6667888888888877653 57778 77765444
Q ss_pred CC-CCCCHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 234 PP-ALSDRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 p~-~~~d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+| ..+|.++++.+++++++ .|.++....+++++|++++.+
T Consensus 288 ~p~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~~ 329 (370)
T TIGR01246 288 EPFLTNDGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIAL 329 (370)
T ss_pred cceeCCCCHHHHHHHHHHHHHhCCCCceecCCCCchHHHHHH
Confidence 44 34478899999999987 477666667788999999864
No 28
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.89 E-value=1.2e-21 Score=175.77 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.. ++++|.|++++|||. |+.|++++..... .
T Consensus 90 g~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~-----g~~G~~~~~~~~~----------~----------------- 135 (347)
T PRK08652 90 GGVAAILLALEELGKEF--EDLNVGIAFVSDEEE-----GGRGSALFAERYR----------P----------------- 135 (347)
T ss_pred HHHHHHHHHHHHHhhcc--cCCCEEEEEecCccc-----CChhHHHHHHhcC----------C-----------------
Confidence 58899999999998654 467999999999997 4568887642110 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+ +.+|.+++ . ..++.+++|..|++|+++|+++|++ .|+.+ |.++++++..|+
T Consensus 136 --------------d--~~i~~ep~------~--~~i~~~~~g~~~~~i~~~G~~~H~s-~p~~g~nAi~~~a~~i~~l~ 190 (347)
T PRK08652 136 --------------K--MAIVLEPT------D--LKVAIAHYGNLEAYVEVKGKPSHGA-CPESGVNAIEKAFEMLEKLK 190 (347)
T ss_pred --------------C--EEEEecCC------C--CceeeecccEEEEEEEEEeeecccC-CCCcCcCHHHHHHHHHHHHH
Confidence 1 12343332 1 2356789999999999999999975 78887 999999999998
Q ss_pred HHHHhhCC-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC
Q 043727 160 KHVLESGS-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP 235 (275)
Q Consensus 160 ~~~~~~~~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~ 235 (275)
++...... -..+++++.+++ +...|+||++|++++| .+.+..+++.++|++.+++ +++++ ++.......+
T Consensus 191 ~~~~~~~~~~~~~~~~~~i~g-g~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~----~~v~~-~~~~~~~~~~ 264 (347)
T PRK08652 191 ELLKALGKYFDPHIGIQEIIG-GSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILDE----YTVKY-EYTEIWDGFE 264 (347)
T ss_pred HHHHhhhcccCCCCcceeeec-CCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh----cCceE-EEeccCCccc
Confidence 87543210 013567777886 4689999999999999 6778888899998887743 56666 5543322223
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 236 ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 236 ~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.+|+++++.+++++++.|.++....+++++|+++|.+
T Consensus 265 ~~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tDa~~~~~ 302 (347)
T PRK08652 265 LDEDEEIVQLLEKAMKEVGLEPEFTVMRSWTDAINFRY 302 (347)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCcCcCCccchhHHHHH
Confidence 45678999999999998887665566778999999864
No 29
>PRK13381 peptidase T; Provisional
Probab=99.89 E-value=3.6e-21 Score=176.32 Aligned_cols=208 Identities=14% Similarity=0.046 Sum_probs=155.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++++ .++++|.|++++|||. |+.|++.+... ++.
T Consensus 141 gg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~-----g~~G~~~~~~~-------------------------~~~-- 187 (404)
T PRK13381 141 AAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEI-----GLRGAKALDLA-------------------------RFP-- 187 (404)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccc-----ccccHHHHHHh-------------------------cCC--
Confidence 47899999999999886 4678999999999997 46788776310 111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+..+.+|+ +. +..++.+++|..||+|+++|+++|++..|..+ |.++++++.+|+
T Consensus 188 -------------~d~~~~~~~--~~-------~~~i~~~~~G~~~~~v~v~Gk~aHa~~~p~~g~NAI~~a~~~i~~l~ 245 (404)
T PRK13381 188 -------------VDFAYTIDC--CE-------LGEVVYENFNAASAEITITGVTAHPMSAKGVLVNPILMANDFISHFP 245 (404)
T ss_pred -------------CCEEEEecC--CC-------cceEEEecCcceEEEEEEEeEecCCCCCcccCcCHHHHHHHHHHhCC
Confidence 122333332 21 12467789999999999999999987568766 999999999987
Q ss_pred HHHHhhC-C-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEecCC
Q 043727 160 KHVLESG-S-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRG-VTLSEFKIVNQD 233 (275)
Q Consensus 160 ~~~~~~~-~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g-~~~~~i~~~~~~ 233 (275)
++..+.. . ...+++++.+++ | |++|++++| ++.+..+.+.++|++++++++..++ +++ ++++...+
T Consensus 246 ~~~~~~~~~~~~~~i~v~~i~g-----~--p~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 317 (404)
T PRK13381 246 RQETPEHTEGREGYIWVNDLQG-----N--VNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINAKYPTARV-SLTLTDQY 317 (404)
T ss_pred ccCCCCCCCCcccEEEEEeEEe-----C--cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEEEEeCC
Confidence 7532211 1 123577777663 2 899999999 7888999999999999999888777 677 76644322
Q ss_pred --C--CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 234 --P--PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 --p--~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+ ++.+|+++++.+++++++.|.+.....++++||+++|.+
T Consensus 318 ~~~~~~~~~~~~lv~~l~~a~~~~g~~~~~~~~~g~tDa~~~~~ 361 (404)
T PRK13381 318 SNISNSIKDDRRAVDLAFDAMKELGIEPKVIPMRGGTDGAALSA 361 (404)
T ss_pred chhhcccccCHHHHHHHHHHHHHcCCCeeeccCCccchHHHHhc
Confidence 2 245688999999999988887666667788999999964
No 30
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.88 E-value=7.5e-21 Score=174.47 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++++..++++|.|++++|||. | .|++.+.- + ++.
T Consensus 145 gglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~-----g-~Ga~~l~~-----~--------------------~~~-- 191 (410)
T TIGR01882 145 AGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEI-----G-RGAHKFDV-----K--------------------DFN-- 191 (410)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccC-----C-cCcchhhh-----h--------------------hcC--
Confidence 4899999999999997434688999999999996 3 26665421 0 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+ +.+|+... +.+ .+....+|..||+|+++|+++|++..|..+ +..+++++..+.
T Consensus 192 -------------~~--~~~~i~ge----p~g---~i~~~~~g~~~~~I~v~Gk~aHa~~~~~~g~nAi~~a~~~~~~l~ 249 (410)
T TIGR01882 192 -------------AD--FAYTVDGG----PLG---ELEYETFSAAAAKITIQGNNVHPGTAKGKMINAAQIAIDLHNLLP 249 (410)
T ss_pred -------------cc--EEEEeCCC----CCC---eEEEccccceEEEEEEEEEecCcccChHHHHHHHHHHHHHHHhcC
Confidence 01 12333221 112 134445789999999999999997655566 555555544333
Q ss_pred HHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEecCCC-
Q 043727 160 KHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGV-TLSEFKIVNQDP- 234 (275)
Q Consensus 160 ~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~-~~~~i~~~~~~p- 234 (275)
.. ..+...+.++|.++++ ..|.||++|++.+| ++.+..++++++|++++++++..+++ .+ ++++...++
T Consensus 250 ~~---~~~~~t~~~~g~i~~g--~i~giPd~a~l~~diR~~~~e~~e~i~~~i~~i~~~~~~~~g~~~v-~~~~~~~~~~ 323 (410)
T TIGR01882 250 ED---DRPEYTEGREGFFHLL--SIDGTVEEAKLHYIIRDFEKENFQERKELMKRIVEKMNNEYGQDRI-KLDMNDQYYN 323 (410)
T ss_pred Cc---CCCccccceeEEEEEE--eEEEecCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCceE-EEEEEeeecC
Confidence 21 1111112234567653 57889999999999 88999999999999999998887774 45 555444343
Q ss_pred ---CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 235 ---PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 235 ---~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
.+.+++++++.++++++++|.+.....+++++|+++|+.
T Consensus 324 ~~~~~~~~~~lv~~~~~a~~~~G~~~~~~~~~ggtDa~~~~~ 365 (410)
T TIGR01882 324 MAEKIEKVMEIVDIAKQAMENLGIEPKISPIRGGTDGSQLSY 365 (410)
T ss_pred hhhccCCCHHHHHHHHHHHHHhCCCCcccccceechHHHHHh
Confidence 356789999999999998887665566788999999864
No 31
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.87 E-value=5.2e-21 Score=174.08 Aligned_cols=211 Identities=13% Similarity=0.158 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+ ++++|.|++++|||. |+.|++.+..... + .++.+
T Consensus 107 g~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~-----g~~G~~~l~~~~~---------~------------~~~~~- 157 (385)
T PRK07522 107 GFIAAALAAVPELAAAP--LRRPLHLAFSYDEEV-----GCLGVPSMIARLP---------E------------RGVKP- 157 (385)
T ss_pred hHHHHHHHHHHHHHhCC--CCCCEEEEEEecccc-----CCccHHHHHHHhh---------h------------cCCCC-
Confidence 46888999999999874 578999999999997 4578888754211 0 01111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+..+ +.++.+ ..++.+++|..||+|+++|+++|+| .|..+ +.++++++..|+
T Consensus 158 --------------d~~i--------~~ep~~--~~~~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 212 (385)
T PRK07522 158 --------------AGCI--------VGEPTS--MRPVVGHKGKAAYRCTVRGRAAHSS-LAPQGVNAIEYAARLIAHLR 212 (385)
T ss_pred --------------CEEE--------EccCCC--CeeeeeecceEEEEEEEEeeccccC-CCccCcCHHHHHHHHHHHHH
Confidence 1111 111222 3467889999999999999999997 55555 999999999998
Q ss_pred HHHHhhC---C-------CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHH------HHHhc
Q 043727 160 KHVLESG---S-------IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAIT------IAKNR 220 (275)
Q Consensus 160 ~~~~~~~---~-------~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~------~~~~~ 220 (275)
++..+.. + +..+++++.|++ |.+.|+||++|++.+| .+.+..+++.++|++.+++ .+..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~t~~i~~i~g-G~~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~ 291 (385)
T PRK07522 213 DLADRLAAPGPFDALFDPPYSTLQTGTIQG-GTALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHP 291 (385)
T ss_pred HHHHHHhhcCCCCcCCCCCcceeEEeeeec-CccccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcC
Confidence 8754321 1 126899999996 5799999999999999 7778889999999999877 24557
Q ss_pred CCCEEEEEEecCCCCCCCC--HHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 221 GVTLSEFKIVNQDPPALSD--RSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 221 g~~~~~i~~~~~~p~~~~d--~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
++++ +++....+||+.++ .++++.+++++.+ +. ...+.+++|+++|..
T Consensus 292 ~~~v-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~-~~~~~~~td~~~~~~ 341 (385)
T PRK07522 292 EAAI-EFEPLSAYPGLDTAEDAAAARLVRALTGD---ND-LRKVAYGTEAGLFQR 341 (385)
T ss_pred CCcE-EEEeccCCCCCCCCCCcHHHHHHHHHhCC---CC-cceEeeecchHHhcc
Confidence 8888 88777678887654 6788887765432 22 222446899998864
No 32
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.87 E-value=1.1e-20 Score=174.27 Aligned_cols=213 Identities=16% Similarity=0.110 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||. ++.|+..+.. .|+..+
T Consensus 141 gg~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----~g~g~~~~~~-------------------------~~~~~d 190 (427)
T PRK06837 141 AGLAAMLFALDALRAAGLAPAARVHFQSVIEEES-----TGNGALSTLQ-------------------------RGYRAD 190 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEecccc-----CCHhHHHHHh-------------------------cCcCCC
Confidence 4899999999999999988899999999999996 3345543321 011111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
..+ +.++.+ ..++.+++|..|++|+++|+++|+| .|+.| +..+++++..|+
T Consensus 191 ---------------~~i--------v~ep~~--~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 244 (427)
T PRK06837 191 ---------------ACL--------IPEPTG--EKLVRAQVGVIWFRLRVRGAPVHVR-EAGTGANAIDAAYHLIQALR 244 (427)
T ss_pred ---------------EEE--------EcCCCC--CccccccceeEEEEEEEEeeccccC-CcccCcCHHHHHHHHHHHHH
Confidence 000 111121 2356788999999999999999997 78877 999999999998
Q ss_pred HHHHhhC------------CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhc----
Q 043727 160 KHVLESG------------SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNR---- 220 (275)
Q Consensus 160 ~~~~~~~------------~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~---- 220 (275)
.+..... ..+.+++++.|++ +.+.|+||++|++.++ .+.+..+.+.++|++.+++.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~g-G~~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~~~~~~~~~~ 323 (427)
T PRK06837 245 ELEAEWNARKASDPHFEDVPHPINFNVGIIKG-GDWASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAAAARDDRFLS 323 (427)
T ss_pred HHHHHHhhcccCCCcccCCCCceeEeeeeEeC-CCCCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHHHHhcChhhh
Confidence 7653211 0245899999996 4789999999999999 677889999999999988765432
Q ss_pred CCCEEEEEEec-CCCCCCC--CHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhc
Q 043727 221 GVTLSEFKIVN-QDPPALS--DRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 221 g~~~~~i~~~~-~~p~~~~--d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+..+ ++++.. ..+|+.. |.++++.+++++++ .|.+.....+++++|++++.+
T Consensus 324 ~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~tDa~~~~~ 379 (427)
T PRK06837 324 NNPP-EVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSFVTTAYTDTRFYGL 379 (427)
T ss_pred hCCC-eEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeeeEEeeccchHHHhc
Confidence 3334 454332 3455543 45899999999887 577666666788999999864
No 33
>PRK09133 hypothetical protein; Provisional
Probab=99.87 E-value=8.8e-21 Score=177.04 Aligned_cols=220 Identities=16% Similarity=0.190 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|++++.|++.+..++++|.|++++|||.+ |+.|++.+..... ..+ +.
T Consensus 144 g~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~----g~~G~~~l~~~~~--~~~----~~----------------- 196 (472)
T PRK09133 144 ADAAIWVATLIRLKREGFKPKRDIILALTGDEEGT----PMNGVAWLAENHR--DLI----DA----------------- 196 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccC----ccchHHHHHHHHh--hcc----Ce-----------------
Confidence 47899999999999999888999999999999932 5778888754211 000 00
Q ss_pred CCCcchhhccCCCceEEEEeeccccc-ccccCC--CceEEEEeeecceEEEEEEEecCCCCCcchhhH--HHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGL-ILEEEG--TSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN--SLAAAEVALA 157 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~-~le~~~--~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g--i~aaa~~i~~ 157 (275)
+ +-+. |.+. .+...+ ....++.++||..|++|+++|+++|+| .|+.. |..+++++.+
T Consensus 197 --------------~--~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~~~i~v~G~~~Hss-~p~~~nAi~~l~~~l~~ 258 (472)
T PRK09133 197 --------------E--FALN-EGGGGTLDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSS-RPTKDNAIYRLAAALSR 258 (472)
T ss_pred --------------E--EEEE-CCCccccCCCCCceEEEeeeecceeEEEEEEEecCCCCCC-CCCCCChHHHHHHHHHH
Confidence 1 1122 2221 001001 113456789999999999999999997 67644 9999999998
Q ss_pred HHHHHH-------------------------------------------hhC-----CCCeEEEEEEEEeeCCCCceeCc
Q 043727 158 VEKHVL-------------------------------------------ESG-----SIDTVGTVGILELHSGAINSIPS 189 (275)
Q Consensus 158 l~~~~~-------------------------------------------~~~-----~~~~~~tvg~i~~g~~~~NvIP~ 189 (275)
|+++.. ... ....+++++.|++| ...|+||+
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG-~~~NvVP~ 337 (472)
T PRK09133 259 LAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGG-HAENALPQ 337 (472)
T ss_pred HhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecC-CcCccCCC
Confidence 875300 000 01358899999975 79999999
Q ss_pred eEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-cCCCCCCCCHHHHHHHHHHHHHh--CCCccccCCC
Q 043727 190 KSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIV-NQDPPALSDRSIILEAEVALKEL--NLTYKFMISR 263 (275)
Q Consensus 190 ~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~-~~~p~~~~d~~l~~~~~~~~~~~--g~~~~~~~~~ 263 (275)
+|++++| .+.+..+++.++|+++++. .++++ ++... ...++...+.++++.+++++++. |.+.....++
T Consensus 338 ~a~~~lDiR~~p~~~~e~v~~~I~~~i~~----~~v~v-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~ 412 (472)
T PRK09133 338 RATANVNCRIFPGDTIEAVRATLKQVVAD----PAIKI-TRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVPVIPSMST 412 (472)
T ss_pred ceEEEEEEEeCCchhHHHHHHHHHHHhcC----CCEEE-EEccCCCCCCCCCCCcHHHHHHHHHHHHHCCCCceeccccc
Confidence 9999999 7778889899888887753 33344 33211 11234556788999999999876 5555556788
Q ss_pred CcchHHhhhc
Q 043727 264 AYHDSPFMAR 273 (275)
Q Consensus 264 ~g~Da~~~~~ 273 (275)
++||++++.+
T Consensus 413 ggtDa~~~~~ 422 (472)
T PRK09133 413 GATDGRYLRA 422 (472)
T ss_pred cccchHHHHh
Confidence 9999999864
No 34
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.87 E-value=1.9e-20 Score=171.32 Aligned_cols=221 Identities=18% Similarity=0.184 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+.+++++|.|++++|||.+ +..|++.+.... .+ +..+ ..+
T Consensus 115 ~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g----~~~G~~~~~~~~----~~---~~~~----------~~~--- 170 (400)
T TIGR01880 115 CVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIG----GHDGMEKFAKTD----EF---KALN----------LGF--- 170 (400)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccC----cHhHHHHHHHhh----hc---cCCc----------eEE---
Confidence 46889999999999999888999999999999973 235888775321 01 0000 011
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH-HHHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN-SLAAAEVALAVEKH 161 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g-i~aaa~~i~~l~~~ 161 (275)
-+ ..| ..++.+ ...++.+++|..+++|+++|+++|+|.++... +..+++++..|+.+
T Consensus 171 ------------------~~--d~g-~~~~~~-~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~ 228 (400)
T TIGR01880 171 ------------------AL--DEG-LASPDD-VYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRF 228 (400)
T ss_pred ------------------EE--cCC-Cccccc-ccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 00 000 001111 12466789999999999999999997433222 88888888877664
Q ss_pred HH-------hh-C--C-CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEE
Q 043727 162 VL-------ES-G--S-IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEF 227 (275)
Q Consensus 162 ~~-------~~-~--~-~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i 227 (275)
.. .. . . ..++++++.|++| .+.|+||++|++.+| .+.+..+++.++|++++++. ..++++ ++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG-~~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~--~~~~~~-~~ 304 (400)
T TIGR01880 229 RESQFQLLQSNPDLAIGDVTSVNLTKLKGG-VQSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADA--GEGVTY-EF 304 (400)
T ss_pred hHHHHHHHhcCccccccccceeecceeccC-CcCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhcc--CCceEE-EE
Confidence 21 11 0 0 1369999999974 789999999999999 77788999999999888763 245556 55
Q ss_pred EEecCCC-CC--CCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 228 KIVNQDP-PA--LSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 228 ~~~~~~p-~~--~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
......| +. ..+.++++.+++++++.+.+.....++++||++++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~~~~~~~~~~g~tDa~~~~~ 353 (400)
T TIGR01880 305 SQHSGKPLVTPHDDSNPWWVAFKDAVKEMGCTFKPEILPGSTDSRYIRA 353 (400)
T ss_pred eecCCCCCCCCCCCCCHHHHHHHHHHHHcCCeecceeecCcchHHHHHh
Confidence 4333333 22 2356899999999998876544556788999999864
No 35
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.86 E-value=3e-20 Score=167.73 Aligned_cols=207 Identities=15% Similarity=0.184 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+ .+++|.|++++|||. |+.|++.+..... +.+
T Consensus 101 g~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~-----g~~G~~~~~~~~~------------------------~~~- 148 (364)
T TIGR01892 101 GFLACALAAAPDLAAEQ--LKKPLHLALTADEEV-----GCTGAPKMIEAGA------------------------GRP- 148 (364)
T ss_pred hHHHHHHHHHHHHHhcC--cCCCEEEEEEecccc-----CCcCHHHHHHhcC------------------------CCC-
Confidence 47899999999999865 578999999999997 4578887753210 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+..+ +.++.+ ..++.+++|..|++|+++|+++|++ .|+.| |..+++++.+|+
T Consensus 149 --------------d~~i--------~~ep~~--~~~~~~~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 203 (364)
T TIGR01892 149 --------------RHAI--------IGEPTR--LIPVRAHKGYASAEVTVRGRSGHSS-YPDSGVNAIFRAGRFLQRLV 203 (364)
T ss_pred --------------CEEE--------ECCCCC--ceeEEeeceEEEEEEEEEccccccc-CCccCcCHHHHHHHHHHHHH
Confidence 0000 011222 1245678999999999999999997 78887 999999999998
Q ss_pred HHHHhhC---------CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHH-hcCCCEEE
Q 043727 160 KHVLESG---------SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAK-NRGVTLSE 226 (275)
Q Consensus 160 ~~~~~~~---------~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~-~~g~~~~~ 226 (275)
++..... ....+++++.|++ +...|+||++|++.+| .+.+..+++.++|++++++.+. .+++++ +
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~g-g~~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v-~ 281 (364)
T TIGR01892 204 HLADTLLREDLDEGFTPPYTTLNIGVIQG-GKAVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEV-Q 281 (364)
T ss_pred HHHHHhccCCCCccCCCCCceEEEeeeec-CCCCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceE-E
Confidence 7643211 0136899999997 4799999999999999 6678899999999999987653 567888 8
Q ss_pred EEEecCCCCCC--CCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 227 FKIVNQDPPAL--SDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 227 i~~~~~~p~~~--~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
++....+|++. .|.++++.++++. +.++. ..++++|+++|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~--~~~~~tD~~~~~~ 325 (364)
T TIGR01892 282 IEVVSTDPGVNTEPDAELVAFLEELS---GNAPE--VVSYGTEAPQFQE 325 (364)
T ss_pred EEEccCCCCcCCCCCCHHHHHHHHHh---CCCCc--eecccccHHHHHh
Confidence 87766677754 3567888776543 33322 2456899999865
No 36
>PRK08262 hypothetical protein; Provisional
Probab=99.86 E-value=1.9e-20 Score=175.39 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||. |+.|++.+...+. ..+..++
T Consensus 157 g~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~-----g~~G~~~l~~~l~---------------------~~~~~~~ 210 (486)
T PRK08262 157 GSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEV-----GGLGARAIAELLK---------------------ERGVRLA 210 (486)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCeEEEEEeccccc-----CCcCHHHHHHHHH---------------------HhcCCEE
Confidence 4789999999999999988899999999999997 4558887753211 0011100
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCc-eEEEEeeecceEEEEEEEecCCCCCcchhhH--HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTS-IVIVTAIAASASIKVDFEGNEGHAGAVLMPN--SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~-~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g--i~aaa~~i~~l~ 159 (275)
. .+. -+.++..|...+ .+.+ ..+..+++|..+++|+++|+++|+|.++. - +..+++++.+|+
T Consensus 211 ~-~~~--------~~~~i~~~~~~~-----~~~p~~~i~~~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~ 275 (486)
T PRK08262 211 F-VLD--------EGGAITEGVLPG-----VKKPVALIGVAEKGYATLELTARATGGHSSMPPR-QTAIGRLARALTRLE 275 (486)
T ss_pred E-EEe--------CCceecccccCC-----CCceEEeeEEeeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 0 000 000111121111 0111 23556789999999999999999975444 5 889999999887
Q ss_pred HHH----------------Hhh-------------------------C-----CCCeEEEEEEEEeeCCCCceeCceEEE
Q 043727 160 KHV----------------LES-------------------------G-----SIDTVGTVGILELHSGAINSIPSKSHL 193 (275)
Q Consensus 160 ~~~----------------~~~-------------------------~-----~~~~~~tvg~i~~g~~~~NvIP~~a~~ 193 (275)
+.. .+. . ....++|+|.|++| ...|+||++|++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG-~~~NvIP~~a~~ 354 (486)
T PRK08262 276 DNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGS-PKDNVLPQRATA 354 (486)
T ss_pred hCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecC-CccccCCCccEE
Confidence 520 000 0 01358999999975 689999999999
Q ss_pred EEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCC--CCCCCHHHHHHHHHHHHHhCC--CccccCCCCcc
Q 043727 194 EID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDP--PALSDRSIILEAEVALKELNL--TYKFMISRAYH 266 (275)
Q Consensus 194 ~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p--~~~~d~~l~~~~~~~~~~~g~--~~~~~~~~~g~ 266 (275)
++| .+.+..+++.++|++.+++. ++++ ++......| ++.+|+++++.+++++++... ......++++|
T Consensus 355 ~~diR~~p~~~~~~i~~~i~~~~~~~----~~~v-~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~~g~t 429 (486)
T PRK08262 355 TVNFRILPGDSVESVLAHVRRAVADD----RVEI-EVLGGNSEPSPVSSTDSAAYKLLAATIREVFPDVVVAPYLVVGAT 429 (486)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccC----ceEE-EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCccccceecccc
Confidence 999 67788899999998887652 4555 444322233 345678999999999987642 33344577899
Q ss_pred hHHhhhc
Q 043727 267 DSPFMAR 273 (275)
Q Consensus 267 Da~~~~~ 273 (275)
|+++|..
T Consensus 430 Da~~~~~ 436 (486)
T PRK08262 430 DSRHYSG 436 (486)
T ss_pred cHHHHHH
Confidence 9999864
No 37
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.85 E-value=3.6e-20 Score=165.69 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|+|++.|++.+ .+|.|++++|||. |+.|++.++.... . + +.+
T Consensus 85 g~~aa~l~a~~~l~~~~----~~i~~~~~~dEE~-----g~~G~~~~~~~~~---------~-~----------~~i--- 132 (336)
T TIGR01902 85 GPLIAMIFATWLLNEKG----IKVIVSGLVDEES-----SSKGAREVIDKNY---------P-F----------YVI--- 132 (336)
T ss_pred cHHHHHHHHHHHHHhCC----CcEEEEEEeCccc-----CCccHHHHHhhcC---------C-C----------EEE---
Confidence 48899999999998765 4799999999998 5689987753210 0 0 000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPNSLAAAEVALAVEKHV 162 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~gi~aaa~~i~~l~~~~ 162 (275)
+.|+++.+ .++.+++|..|++++++|+++|++ .|...+.++.+++..|.+..
T Consensus 133 --------------------------i~ept~~~-~i~~~~kG~~~~~v~~~G~~~Hss-~~~~ai~~~~~~~~~l~~~~ 184 (336)
T TIGR01902 133 --------------------------VGEPSGAE-GITLGYKGSLQLKIMCEGTPFHSS-SAGNAAELLIDYSKKIIEVY 184 (336)
T ss_pred --------------------------EecCCCCc-ceeeeeeeEEEEEEEEEecCcccC-CChhHHHHHHHHHHHHHHHh
Confidence 11222211 356789999999999999999986 56545888888888887322
Q ss_pred Hh-hCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC--
Q 043727 163 LE-SGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA-- 236 (275)
Q Consensus 163 ~~-~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~-- 236 (275)
.. ...+..+++++.+++| .+.|+||++|++++| .+.+..+++.++|++ . ..+ +++....+||+
T Consensus 185 ~~~~~~~~~~~~~~~i~gg-~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~-------~--~~~-~~~~~~~~~p~~~ 253 (336)
T TIGR01902 185 KQPENYDKPSIVPTIIRFG-ESYNDTPAKLELHFDLRYPPNNKPEEAIKEITD-------K--FPI-CLEIVDETPPYKV 253 (336)
T ss_pred ccccCCCCCcceeEEEEcc-CCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh-------c--cCc-eEEEEeccCceec
Confidence 22 1112357888989874 799999999999999 566777777666664 1 234 44444556665
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 237 LSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
..|.++++.+++++++.+.++....+.+++|+++|.+
T Consensus 254 ~~~~~lv~~~~~a~~~~~~~~~~~~~~g~tD~~~~~~ 290 (336)
T TIGR01902 254 SRNNPLVRAFVRAIRKQGMKPRLKKKTGTSDMNILAP 290 (336)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEeeccccCccceecc
Confidence 3467899999999998876555445567899999865
No 38
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.85 E-value=3.7e-20 Score=169.89 Aligned_cols=226 Identities=20% Similarity=0.234 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.++++++.|++.|++.+..++++|.+++++|||. ++.|.+.+..... +. .
T Consensus 119 G~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~-----g~~~~~~~~~~~~---------~~-----------~----- 168 (409)
T COG0624 119 GGLAAALYALSALKAAGGELPGDVRLLFTADEES-----GGAGGKAYLEEGE---------EA-----------L----- 168 (409)
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEEEEEecccc-----CCcchHHHHHhcc---------hh-----------h-----
Confidence 3789999999999999888899999999999998 4456655532110 00 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcc-hhhH---HHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAV-LMPN---SLAAAEVALAV 158 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~-p~~g---i~aaa~~i~~l 158 (275)
.....+++|+|| .++..+.+..+ .+++|..|++|+++|+++|+|.+ |..+ +..+.+.+.++
T Consensus 169 ------------~~~~d~~i~~E~--~~~~~~~~~~~-~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~ 233 (409)
T COG0624 169 ------------GIRPDYEIVGEP--TLESEGGDIIV-VGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAEL 233 (409)
T ss_pred ------------ccCCCEEEeCCC--CCcccCCCeEE-EcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHH
Confidence 234567889988 34344444444 48999999999999999999753 6555 44455555544
Q ss_pred HHHHHhhC---CC-CeEEEEEEEEeeCCC-------CceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCE
Q 043727 159 EKHVLESG---SI-DTVGTVGILELHSGA-------INSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTL 224 (275)
Q Consensus 159 ~~~~~~~~---~~-~~~~tvg~i~~g~~~-------~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~ 224 (275)
.....+.. .. +.+++++.+.++... .|+||++|++.+| .+.+..+++.+++++.++..+...++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~ 313 (409)
T COG0624 234 IEELGDLAGEGFDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEY 313 (409)
T ss_pred HHHhcccccccccCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceE
Confidence 33322211 12 477888877765432 5999999999999 6777888888888888887665567777
Q ss_pred EEEEE--ecCCCCCCCCHHHHHHHHHHHHH-hCCCccccCCCCcchHHhhhcc
Q 043727 225 SEFKI--VNQDPPALSDRSIILEAEVALKE-LNLTYKFMISRAYHDSPFMARY 274 (275)
Q Consensus 225 ~~i~~--~~~~p~~~~d~~l~~~~~~~~~~-~g~~~~~~~~~~g~Da~~~~~~ 274 (275)
++.. .....++..+.++++.+.+++++ .|.+.....+++++|+.|+..+
T Consensus 314 -~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~~~~~~~G~~~da~~~~~~ 365 (409)
T COG0624 314 -EIEPGLGEPPLPVPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDARFFARL 365 (409)
T ss_pred -EeccccCCccccCCCchHHHHHHHHHHHHhhCCCceecCCCCcchHHHHHhc
Confidence 6664 23334556788999999999987 4776444666677999998753
No 39
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.85 E-value=6.7e-20 Score=166.71 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.+++++|.+++.|++.+ ++++|.|++++|||. |+.|++.++.... + ..
T Consensus 114 g~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~-----g~~G~~~~~~~~~----~--------------------~~- 161 (383)
T PRK05111 114 GFFAFILEALRDIDLTK--LKKPLYILATADEET-----SMAGARAFAEATA----I--------------------RP- 161 (383)
T ss_pred HHHHHHHHHHHHHhhcC--CCCCeEEEEEecccc-----CcccHHHHHhcCC----C--------------------CC-
Confidence 36889999999998765 468899999999997 4578887753210 0 00
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+..+ +-++++. .++.+++|..|++|+++|+++|+| .|+.+ |..+++++.+++
T Consensus 162 --------------d~~i--------~~ep~~~--~~~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~~~~~~i~~l~ 216 (383)
T PRK05111 162 --------------DCAI--------IGEPTSL--KPVRAHKGHMSEAIRITGQSGHSS-DPALGVNAIELMHDVIGELL 216 (383)
T ss_pred --------------CEEE--------EcCCCCC--ceeecccceEEEEEEEEeechhcc-CCccCcCHHHHHHHHHHHHH
Confidence 0010 0111221 235688999999999999999996 78887 999999999998
Q ss_pred HHHHhh-----CC----CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEE
Q 043727 160 KHVLES-----GS----IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEF 227 (275)
Q Consensus 160 ~~~~~~-----~~----~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i 227 (275)
.+.... .+ ...+++++.|++| ...|+||++|++++| .+.++.+++.++|++.+++++..+++++ ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg-~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~-~~ 294 (383)
T PRK05111 217 QLRDELQERYHNPAFTVPYPTLNLGHIHGG-DAPNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRI-TV 294 (383)
T ss_pred HHHHHHhccCCCccCCCCCCceeEeeeecC-CcCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeE-EE
Confidence 764321 11 2468999999974 799999999999999 7778899999999999998888888888 87
Q ss_pred EEe-cCCCCC--CCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 228 KIV-NQDPPA--LSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 228 ~~~-~~~p~~--~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
+.. ...|++ ..++++++.+++++ |.+.. ..++++|+.++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~~~---g~~~~--~~~~~~Da~~~~~ 338 (383)
T PRK05111 295 APLHPPIPGYECPADHQLVRVVEKLL---GHKAE--VVNYCTEAPFIQQ 338 (383)
T ss_pred eccccCCCCcCCCCCCHHHHHHHHHh---CCCCc--eeeeeccHHHHHh
Confidence 643 345654 34567877776543 44322 2346799998764
No 40
>PRK07906 hypothetical protein; Provisional
Probab=99.85 E-value=3.2e-20 Score=171.20 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|++++.|++.+.+++++|.|++++|||.+ |..|++.+..... +.+ +.. .
T Consensus 108 g~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g----~~~g~~~l~~~~~--~~~----~~~-----------~---- 162 (426)
T PRK07906 108 DMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAG----GTYGAHWLVDNHP--ELF----EGV-----------T---- 162 (426)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccc----hhhhHHHHHHHHH--Hhc----cch-----------h----
Confidence 37999999999999999989999999999999973 4568988764221 000 000 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH--HHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN--SLAAAEVALAVEK 160 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g--i~aaa~~i~~l~~ 160 (275)
..+.++ +. +.+++.. . .....++.+++|..|++|+++|+++|++ .|... |..+++++..|++
T Consensus 163 -~ii~e~----~~----~~~~~~~-----~-~~~~~i~~~~kG~~~~~v~v~G~~~Hss-~p~~~nAi~~~~~~l~~l~~ 226 (426)
T PRK07906 163 -EAISEV----GG----FSLTVPG-----R-DRLYLIETAEKGLAWMRLTARGRAGHGS-MVNDDNAVTRLAEAVARIGR 226 (426)
T ss_pred -eEEECC----Cc----eeeccCC-----C-ccEEEEEeccceEEEEEEEEEeCCCCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 001110 00 0011100 0 0113477889999999999999999997 56434 9999999988864
Q ss_pred HH-----------------Hhh----CCC--------------------CeEEEEEEEEeeCCCCceeCceEEEEEe--C
Q 043727 161 HV-----------------LES----GSI--------------------DTVGTVGILELHSGAINSIPSKSHLEID--I 197 (275)
Q Consensus 161 ~~-----------------~~~----~~~--------------------~~~~tvg~i~~g~~~~NvIP~~a~~~~d--~ 197 (275)
.. ... .+. ..+++++.|++| .+.|+||++|++++| +
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG-~~~NviP~~~~~~~d~R~ 305 (426)
T PRK07906 227 HRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAG-YKVNVIPGTAEAVVDGRF 305 (426)
T ss_pred CCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEecc-CccccCCCceEEEEEEeE
Confidence 21 000 000 248999999974 689999999999999 3
Q ss_pred CHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC--CCCHHHHHHHHHHHHHhC--CCccccCCCCcchHHhhhc
Q 043727 198 DEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA--LSDRSIILEAEVALKELN--LTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 198 ~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~--~~d~~l~~~~~~~~~~~g--~~~~~~~~~~g~Da~~~~~ 273 (275)
.+...+++.++|++++ +..+ ++++...+||. ..|.++++.+++++++.. ........+++||+++|.+
T Consensus 306 ~p~~~~~i~~~i~~~~-------~~~v-~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggtDa~~~~~ 377 (426)
T PRK07906 306 LPGREEEFLATVDELL-------GPDV-EREWVHRDPALETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGTDAKAFSR 377 (426)
T ss_pred CCCCcHHHHHHHHHHh-------CCCe-EEEEecCCCCCCCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccCcHHHHHh
Confidence 3323355555555543 1235 55554455554 456789999999998763 2233334567899999875
No 41
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.84 E-value=2.6e-19 Score=163.59 Aligned_cols=208 Identities=15% Similarity=0.035 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++.+|.|++++|||.+ +..+++.+... .++.+
T Consensus 111 g~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~----~g~~~~~~~~~------------------------~~~~~- 161 (395)
T TIGR03320 111 GGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDC----DGLCWQYIIEE------------------------DGIKP- 161 (395)
T ss_pred chHHHHHHHHHHHHHcCCCCCceEEEEeccccccc----CchHHHHHHHh------------------------cCCCC-
Confidence 47899999999999999888889999999999962 22344443210 01111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
++.+ +.|++ ...++.+++|..|++|+++|+++|+| .|+.| +.++++++..|+
T Consensus 162 --------------d~~i--------v~ep~--~~~i~~g~~G~~~~~v~~~G~~~Hss-~p~~g~nAi~~~~~~l~~l~ 216 (395)
T TIGR03320 162 --------------EFVV--------ITEPT--DMNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIYKMAPILKELS 216 (395)
T ss_pred --------------CEEE--------EcCCC--ccceEEecceEEEEEEEEeeeccccC-CCCCCCCHHHHHHHHHHHHH
Confidence 1111 11222 23466789999999999999999997 78887 999999999998
Q ss_pred HHHHhhC--C--CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEec-
Q 043727 160 KHVLESG--S--IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVN- 231 (275)
Q Consensus 160 ~~~~~~~--~--~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~- 231 (275)
++..... + ...++|+|.|++++.+.|+||++|++++| .+.++.+++.++|++.+.. .+.++ ++++..
T Consensus 217 ~~~~~~~~~~~~~~~t~~v~~i~~g~~~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~----~~~~~-~~~~~~~ 291 (395)
T TIGR03320 217 QLNANLVEDPFLGKGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV----QGAEA-KVEMYNY 291 (395)
T ss_pred HHHHhhcCCcccCcCceeeeeeecCCCCcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhh----cCCCc-eEeeecc
Confidence 8754321 1 24589999999764589999999999999 6677888888888887543 23334 443221
Q ss_pred --------------CCCCC--CCCHHHHHHHHHHHHHh-CCCccccCCCCcchHH
Q 043727 232 --------------QDPPA--LSDRSIILEAEVALKEL-NLTYKFMISRAYHDSP 269 (275)
Q Consensus 232 --------------~~p~~--~~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~ 269 (275)
.+|++ ..+.++++.+.+++++. |.+......++++|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~~~~~~~~~~~~~~ 346 (395)
T TIGR03320 292 DRPSYTGLVYPTECYFPTWVLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGV 346 (395)
T ss_pred CcccccccccccccccCccccCCCCHHHHHHHHHHHHHhCCCCceeecceecccc
Confidence 24544 34678999999999875 6554444455667773
No 42
>PRK13004 peptidase; Reviewed
Probab=99.84 E-value=1.7e-19 Score=165.05 Aligned_cols=213 Identities=15% Similarity=0.043 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+..++++|.+++++|||.. +..|++.+... + ++.+
T Consensus 113 g~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~----~g~~~~~~~~~-------------~-----------~~~~- 163 (399)
T PRK13004 113 GGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDC----DGLCWRYIIEE-------------D-----------KIKP- 163 (399)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccC----cchhHHHHHHh-------------c-----------CCCC-
Confidence 58999999999999999888999999999999963 34566655321 0 1111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+..+- .++. ...++.+++|..|++|+++|+++|+| .|+.| |.++++++..|+
T Consensus 164 --------------d~~i~--------~e~~--~~~i~~~~~G~~~~~v~v~G~~~Ha~-~p~~g~nAi~~~~~~i~~l~ 218 (399)
T PRK13004 164 --------------DFVVI--------TEPT--DLNIYRGQRGRMEIRVETKGVSCHGS-APERGDNAIYKMAPILNELE 218 (399)
T ss_pred --------------CEEEE--------ccCC--CCceEEecceEEEEEEEEeccccccC-CCCCCCCHHHHHHHHHHHHH
Confidence 11111 1111 22466789999999999999999997 78888 999999999998
Q ss_pred HHHHh--hC--CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEE---
Q 043727 160 KHVLE--SG--SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKI--- 229 (275)
Q Consensus 160 ~~~~~--~~--~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~--- 229 (275)
.+... .. ....+++++.|.+|+.+.|+||++|++++| .+.++.+.+.++|+++.+. ...++++ ++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~~~~~v-~~~~~~~ 295 (399)
T PRK13004 219 ELNPNLKEDPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAV--KKANAKV-SMYNYDR 295 (399)
T ss_pred hhccccccCCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhh--ccccceE-EEecccC
Confidence 76432 11 123578999998754589999999999999 6778888898888887322 2234444 3321
Q ss_pred ----------ecCCCCCC--CCHHHHHHHHHHHHHh-CCCccccCCCCcchHHhhh
Q 043727 230 ----------VNQDPPAL--SDRSIILEAEVALKEL-NLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 230 ----------~~~~p~~~--~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~~~~ 272 (275)
...+|++. .+.++++.+++++++. |.++......+++|++.+.
T Consensus 296 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~~~td~~~~~ 351 (399)
T PRK13004 296 PSYTGLVYPTECYFPTWLYPEDHEFVKAAVEAYKGLFGKAPEVDKWTFSTNGVSIA 351 (399)
T ss_pred CCcccccccccccccccccCCCCHHHHHHHHHHHHHhCCCCeecccccccCCeEEe
Confidence 12346543 4678999999999876 7655444455667776553
No 43
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.83 E-value=4.7e-19 Score=160.09 Aligned_cols=203 Identities=16% Similarity=0.091 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++. ++++|.|++++|||.+ +..|++.+... +...
T Consensus 105 g~~aa~l~a~~~-------~~~~v~~~~~~dEE~g----~~~g~~~~~~~-------------------------~~~~- 147 (364)
T PRK08737 105 GAAAALLAAANA-------GDGDAAFLFSSDEEAN----DPRCVAAFLAR-------------------------GIPY- 147 (364)
T ss_pred HHHHHHHHHHHc-------cCCCEEEEEEcccccC----chhhHHHHHHh-------------------------CCCC-
Confidence 467788888763 3578999999999973 22577766421 1100
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
+.++ +.|++. ..++.+++|..|++|+++|+++|+|.+|+.| |.++++++.++.
T Consensus 148 --------------~~~i--------v~Ept~--~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~ 203 (364)
T PRK08737 148 --------------EAVL--------VAEPTM--SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQAL 203 (364)
T ss_pred --------------CEEE--------EcCCCC--ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHH
Confidence 1111 122332 3467899999999999999999997444566 999999998865
Q ss_pred HHHHhh-----C-CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Q 043727 160 KHVLES-----G-SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIV 230 (275)
Q Consensus 160 ~~~~~~-----~-~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~ 230 (275)
+..... + ....++++|.|++ |.+.|+||++|++++| .+.++.+++.++|+++++. ...++ ++...
T Consensus 204 ~~~~~~~~~~~~~~~~~t~~vg~i~G-G~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~----~~~~~-~~~~~ 277 (364)
T PRK08737 204 DHVESLAHARFGGLTGLRFNIGRVEG-GIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEP----AAATF-EETFR 277 (364)
T ss_pred HHHHhhhhhccCCCCCCceEEeeEec-CCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHH----cCCce-EEEec
Confidence 543211 1 1245999999997 4799999999999999 6777888888888776653 23444 44332
Q ss_pred c-CCCCCCCC-HHHHHH-HHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 231 N-QDPPALSD-RSIILE-AEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 231 ~-~~p~~~~d-~~l~~~-~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
. .+|+...+ .+++.. ++++.+..|.+.. ...+++||+++|.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tDa~~~~~ 322 (364)
T PRK08737 278 GPSLPSGDIARAEERRLAARDVADALDLPIG-NAVDFWTEASLFSA 322 (364)
T ss_pred cCCCCCcccCcchHHHHHHHHHHhhhcCCCC-ceeccccCHHHHHH
Confidence 2 34444322 244443 3455555665432 23456899999864
No 44
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.83 E-value=5.6e-19 Score=161.38 Aligned_cols=210 Identities=14% Similarity=0.000 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+..+++++.|++++|||.+ +..|++.+... . ++.+
T Consensus 111 g~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~----~g~~~~~~~~~-------------~-----------~~~~- 161 (395)
T TIGR03526 111 GGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDC----DGLCWQYIIEE-------------D-----------KIKP- 161 (395)
T ss_pred hhHHHHHHHHHHHHHcCCCCCceEEEEEecccccC----CcHhHHHHHhc-------------c-----------CCCC-
Confidence 46899999999999999877889999999999952 23455544321 0 1111
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
++.+ +.|+++ ..++.+++|..|++|+++|+++|+| .|+.| |.++++++.+|+
T Consensus 162 --------------d~~i--------~~ep~~--~~i~~g~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 216 (395)
T TIGR03526 162 --------------EFVV--------ITEPTD--MNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIYKMAPILKELS 216 (395)
T ss_pred --------------CEEE--------ecCCCC--ceEEEEcceEEEEEEEEecCCCccC-CCCCCCCHHHHHHHHHHHHH
Confidence 1111 112222 3466789999999999999999996 78887 999999999998
Q ss_pred HHHHhh--CC--CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe--
Q 043727 160 KHVLES--GS--IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIV-- 230 (275)
Q Consensus 160 ~~~~~~--~~--~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~-- 230 (275)
.+.... ++ +..+++++.|++|+.+.|+||++|++++| .+.+..+++.++|++.++.. ..+.++ ++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~v~~i~~g~~~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~~~~~~~ 293 (395)
T TIGR03526 217 QLNANLVEDPFLGKGTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQ--GAEAEV-EMYEYDR 293 (395)
T ss_pred HhhhhhcCCcccCccceeeeeeecCCCCCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhc--CCcceE-EEecccc
Confidence 875432 11 24689999999754589999999999999 66788888888888876532 122333 32211
Q ss_pred -----------cCCCCC--CCCHHHHHHHHHHHHHh-CCCccccCCCCcchHH
Q 043727 231 -----------NQDPPA--LSDRSIILEAEVALKEL-NLTYKFMISRAYHDSP 269 (275)
Q Consensus 231 -----------~~~p~~--~~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~ 269 (275)
..+||+ ..|.++++.+.+++++. |.+......++++|+.
T Consensus 294 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 346 (395)
T TIGR03526 294 PSYTGLVYPTECYFPTWVLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGV 346 (395)
T ss_pred ccccccccccccccCccccCCCCHHHHHHHHHHHHHhCCCCceeeeeeecccc
Confidence 024543 35678999999999875 5544333455667774
No 45
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.83 E-value=2.6e-19 Score=167.36 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|++++. .+. ++++|.|++++|||+ |+.||+++.+.....+.+ ...|+.. ..
T Consensus 112 ~gva~~l~~~~~---~~~-~~~~i~~~~~~dEE~-----g~~Gs~~l~~~~~~~~~~---~~~d~~~-----------~~ 168 (477)
T TIGR01893 112 IGVAMGLAILED---NNL-KHPPLELLFTVDEET-----GMDGALGLDENWLSGKIL---INIDSEE-----------EG 168 (477)
T ss_pred HHHHHHHHHHhc---CCC-CCCCEEEEEEecccc-----CchhhhhcChhhcCCcEE---EEecCCC-----------CC
Confidence 578888887664 443 567999999999997 688999986532100000 0111100 00
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEe-cCCCCCcchhhH----HHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEG-NEGHAGAVLMPN----SLAAAEVALA 157 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G-~~~Hag~~p~~g----i~aaa~~i~~ 157 (275)
...+.++. ...+.+++|+|++|- ++|..||+|+++| +++|+|++|+.+ +.++++++.+
T Consensus 169 ~~~~g~~~--~~~~~~~~e~~~e~~---------------~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~ 231 (477)
T TIGR01893 169 EFIVGCAG--GRNVDITFPVKYEKF---------------TKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNE 231 (477)
T ss_pred eEEEECCC--CeeEEEEEEEEEEec---------------CCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHh
Confidence 00111110 013678899998761 3799999999999 999999888777 8899999988
Q ss_pred HHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHH--HhcCCCEEEEEEecC
Q 043727 158 VEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIA--KNRGVTLSEFKIVNQ 232 (275)
Q Consensus 158 l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~--~~~g~~~~~i~~~~~ 232 (275)
++... ..+++.+.+ +++.|+||++|++++| .+.+.++.+.+++.+.+++.+ ..+++++ +++....
T Consensus 232 l~~~~--------~~~v~~~~g-g~~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 301 (477)
T TIGR01893 232 LKENL--------NFRLSDIKG-GSKRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITI-EVSKREN 301 (477)
T ss_pred hhhcC--------CeEEEEEeC-CCcccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEE-EEEECCC
Confidence 77531 257888886 5899999999999999 566788888888888887777 4488999 8887777
Q ss_pred CCCCCCCHHHHHHHHHHHHHh
Q 043727 233 DPPALSDRSIILEAEVALKEL 253 (275)
Q Consensus 233 ~p~~~~d~~l~~~~~~~~~~~ 253 (275)
+|...|+.+++.+.++++.+
T Consensus 302 -~~~~~d~~~~~~i~~~~~~~ 321 (477)
T TIGR01893 302 -SVKVFSENTTDKLINALNGL 321 (477)
T ss_pred -cccccCHHHHHHHHHHHHHC
Confidence 88999999999999999987
No 46
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.82 E-value=3.7e-19 Score=161.32 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHH--cCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCC
Q 043727 3 KLCLGDIDIINIVIR--SGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHA 80 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~--~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~ 80 (275)
.|++++|.|++.|++ .+..++++|.|++++|||.+. +..|++.++.... .+ +.
T Consensus 106 gg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~---~~~G~~~~~~~~~---~~-------------------~~ 160 (373)
T TIGR01900 106 AGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAA---EKNGLGHIRDAHP---DW-------------------LA 160 (373)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccC---CCCCHHHHHHhCc---cc-------------------cc
Confidence 479999999999965 355678999999999999731 1247776643210 00 00
Q ss_pred CCCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHH
Q 043727 81 KKHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~ 157 (275)
.++.+ +.|+++ ..++.+++|..|++|+++|+++|+| .|+.| |..+++++.+
T Consensus 161 ---------------~d~~i--------v~Ept~--~~i~~g~~G~~~~~i~v~G~~~H~s-~p~~g~NAi~~~~~~i~~ 214 (373)
T TIGR01900 161 ---------------ADFAI--------IGEPTG--GGIEAGCNGNIRFDVTAHGVAAHSA-RAWLGDNAIHKAADIINK 214 (373)
T ss_pred ---------------CCEEE--------EECCCC--CcccccceeeEEEEEEEEeeccccC-CCCCCCCHHHHHHHHHHH
Confidence 11111 112222 2366789999999999999999997 78887 9999999999
Q ss_pred HHHHHHhh---CC--CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHH--------HHHh--
Q 043727 158 VEKHVLES---GS--IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAIT--------IAKN-- 219 (275)
Q Consensus 158 l~~~~~~~---~~--~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~--------~~~~-- 219 (275)
|+++.... .. ...++|++.|++| .+.|+||++|++++| .+.+..+++.++|+++++. +.+.
T Consensus 215 l~~l~~~~~~~~~~~~~~t~~v~~I~GG-~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~ 293 (373)
T TIGR01900 215 LAAYEAAEVNIDGLDYREGLNATFCEGG-KANNVIPDEARMHLNFRFAPDKDLAEAKALMMGADAGAELGNGEHVAEGGE 293 (373)
T ss_pred HHHhhcccccccCCcccceEEEEEEeCC-CCCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhhhhhhhhHHHHHHhhcc
Confidence 98764321 10 1358999999974 799999999999999 7778888898888765422 2221
Q ss_pred -cC-CCEEEEEEecCCCCC--CCCHHHHHHHHHHHHHh-CCCccccCCCCcchHHhhhc
Q 043727 220 -RG-VTLSEFKIVNQDPPA--LSDRSIILEAEVALKEL-NLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 220 -~g-~~~~~i~~~~~~p~~--~~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~~~~~ 273 (275)
.+ .++ +++.....++. ..+.++++.+.+++++. +.++. .+.++||+++|..
T Consensus 294 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~g~tD~~~~~~ 349 (373)
T TIGR01900 294 FDGQDGI-EIAMEDEAGGALPGLGAPLAQDLIDAVGEEKGRDPL--AKFGWTDVARFSA 349 (373)
T ss_pred ccccccc-eEEEcccCCCCCCCCCCHHHHHHHHHHHhccCCCcc--cccCCccHHHHHh
Confidence 11 134 44433222222 23567778888777765 44432 2567899998853
No 47
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.81 E-value=1.9e-18 Score=155.33 Aligned_cols=201 Identities=14% Similarity=0.041 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|+|++.| +.+++++|.|++++|||. |+.|...+.. + ++.+
T Consensus 94 g~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~-----g~~~~~~~l~-----~--------------------~~~~- 139 (348)
T PRK04443 94 GPLAAFAAAAARL---EALVRARVSFVGAVEEEA-----PSSGGARLVA-----D--------------------RERP- 139 (348)
T ss_pred cHHHHHHHHHHHh---cccCCCCEEEEEEccccc-----CChhHHHHHH-----h--------------------ccCC-
Confidence 4799999999999 456889999999999997 3444433321 0 0001
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH-HHHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN-SLAAAEVALAVEKH 161 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g-i~aaa~~i~~l~~~ 161 (275)
|..+ +.|+++. ..++.+++|..|++++++|+++|+| .|... +..+++++..|+++
T Consensus 140 --------------d~~i--------v~Ept~~-~~i~~~~kG~~~~~l~~~G~~~Hss-~~g~NAi~~~~~~l~~l~~~ 195 (348)
T PRK04443 140 --------------DAVI--------IGEPSGW-DGITLGYKGRLLVTYVATSESFHSA-GPEPNAAEDAIEWWLAVEAW 195 (348)
T ss_pred --------------CEEE--------EeCCCCc-cceeeecccEEEEEEEEEeCCCccC-CCCCCHHHHHHHHHHHHHHH
Confidence 1110 1122221 1366789999999999999999997 56333 99999999999876
Q ss_pred HHhh---C--CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCC
Q 043727 162 VLES---G--SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQD 233 (275)
Q Consensus 162 ~~~~---~--~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~ 233 (275)
.... . .+..+++++.|+. ..|+||++|++.+| .+.+..+++.++|++.+. + + +++....+
T Consensus 196 ~~~~~~~~~~~~~~~~~i~~i~~---~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~------~--~-~~~~~~~~ 263 (348)
T PRK04443 196 FEANDGRERVFDQVTPKLVDFDS---SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP------T--G-TVTFTGAV 263 (348)
T ss_pred HhcCccccccccccceeeeEEec---CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC------C--c-EEEEecCC
Confidence 4311 0 1345788998882 56999999999999 677888888888888762 2 3 44444455
Q ss_pred CCCC--CCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 234 PPAL--SDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 p~~~--~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
||+. .+.++++.++++.++.+.++.....++++|+++|.+
T Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tD~~~~~~ 305 (348)
T PRK04443 264 PAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGTSDMNVVAP 305 (348)
T ss_pred CceecCCCCHHHHHHHHHHHHhcCCcceeccccCCcHHHHhh
Confidence 6543 466799999999998765444444668899999864
No 48
>PRK06446 hypothetical protein; Provisional
Probab=99.80 E-value=3.6e-18 Score=157.97 Aligned_cols=216 Identities=10% Similarity=0.084 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+ .++.+|.|++++|||. |+.|++.+..... . ++..
T Consensus 106 gglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~--~--------------------~~~~- 156 (436)
T PRK06446 106 GTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEI-----GSPNLEDFIEKNK--N--------------------KLKA- 156 (436)
T ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEEEccccc-----CCHhHHHHHHHHH--H--------------------HhCC-
Confidence 47999999999998766 4678999999999997 4667877653210 0 0110
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEe--cCCCCCcchhhH---HHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEG--NEGHAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G--~~~Hag~~p~~g---i~aaa~~i~~ 157 (275)
++.+ +|+.. +...+ .-.++.+++|..|++++++| +++|+| .|..+ |..+++++.+
T Consensus 157 --------------d~vi---~E~~~-~~~~~-~~~i~~~~kG~~~~~l~v~G~~~~~Hss-~p~~g~NAi~~~~~~l~~ 216 (436)
T PRK06446 157 --------------DSVI---MEGAG-LDPKG-RPQIVLGVKGLLYVELVLRTGTKDLHSS-NAPIVRNPAWDLVKLLST 216 (436)
T ss_pred --------------CEEE---ECCCC-ccCCC-CeEEEEecCeEEEEEEEEEeCCCCCCCC-CCccCCCHHHHHHHHHHh
Confidence 1111 12111 11111 12477899999999999999 999997 56665 9999999999
Q ss_pred HHHHH-----------------------Hh-----------h----------------CCCCeEEEEEEEEeeC---CCC
Q 043727 158 VEKHV-----------------------LE-----------S----------------GSIDTVGTVGILELHS---GAI 184 (275)
Q Consensus 158 l~~~~-----------------------~~-----------~----------------~~~~~~~tvg~i~~g~---~~~ 184 (275)
|++.. .. . .....++|+|.|++|. ...
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~~~~~~ 296 (436)
T PRK06446 217 LVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTGKGSK 296 (436)
T ss_pred hCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeeccccCCCCC
Confidence 86421 00 0 0013689999998752 367
Q ss_pred ceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCC--CCHHHHHHHHHHHHHh-CCCcc
Q 043727 185 NSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPAL--SDRSIILEAEVALKEL-NLTYK 258 (275)
Q Consensus 185 NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~--~d~~l~~~~~~~~~~~-g~~~~ 258 (275)
|+||++|++++| .+.++.+++.++|++.+++. +..+ ++.+...++|.. .+.++++.+++++++. |.+..
T Consensus 297 nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~----~~~~-~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~ 371 (436)
T PRK06446 297 TIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKV----GFNG-EIIVHGFEYPVRTSVNSKVVKAMIESAKRVYGTEPV 371 (436)
T ss_pred cEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCe-EEEEcCCcceeecCCCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999 67788899999999887652 3455 665555455543 4678999999999876 66543
Q ss_pred cc-CCCCcchHHhhh
Q 043727 259 FM-ISRAYHDSPFMA 272 (275)
Q Consensus 259 ~~-~~~~g~Da~~~~ 272 (275)
.. .+++++|+++|.
T Consensus 372 ~~~~~~g~~d~~~~~ 386 (436)
T PRK06446 372 VIPNSAGTQPMGLFV 386 (436)
T ss_pred eecCCCCcchHHHHH
Confidence 32 344556877764
No 49
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.80 E-value=4.9e-18 Score=149.51 Aligned_cols=218 Identities=21% Similarity=0.185 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCCC
Q 043727 5 CLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKHN 84 (275)
Q Consensus 5 v~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~~ 84 (275)
+++.|+|+|.|+..|++++|+|.+.+.+|||.+ |..|.+.++.+. ... .+.-|..++|. |.
T Consensus 134 ~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~----G~~Gm~~fa~~~----~~~--~l~~~filDEG----~~----- 194 (420)
T KOG2275|consen 134 GVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIG----GHIGMKEFAKTE----EFK--KLNLGFILDEG----GA----- 194 (420)
T ss_pred HHHHHHHHHHHHhcCCCcCceEEEEecCchhcc----CcchHHHHhhhh----hhc--ccceeEEecCC----CC-----
Confidence 578899999999999999999999999999986 577888776521 121 12233333221 00
Q ss_pred CcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH-HHHHHHHHHHHHHHHH
Q 043727 85 DLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN-SLAAAEVALAVEKHVL 163 (275)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g-i~aaa~~i~~l~~~~~ 163 (275)
+..|. .-+.+++||..|++|+++|+++|+|..|... +.++.+++..+.+...
T Consensus 195 ---------se~d~------------------~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~ 247 (420)
T KOG2275|consen 195 ---------TENDF------------------ATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFRE 247 (420)
T ss_pred ---------Ccccc------------------eeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHH
Confidence 01111 2356889999999999999999997433333 8888888888877642
Q ss_pred h------hCC-----CCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHH-HHHHHHHHHhcCCCEEEEE
Q 043727 164 E------SGS-----IDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKI-HQSAITIAKNRGVTLSEFK 228 (275)
Q Consensus 164 ~------~~~-----~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i-~~~~~~~~~~~g~~~~~i~ 228 (275)
. ..+ +.++++++.|++| .+.|++|.+.++.+| ......+.+.+++ ++++++. ..|+++ ++.
T Consensus 248 ~q~~~l~~~p~~~~~~vtT~Nv~~i~GG-v~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~--~eg~t~-~f~ 323 (420)
T KOG2275|consen 248 KQVDLLASGPKLALGDVTTINVGIINGG-VQSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEA--GEGVTL-EFS 323 (420)
T ss_pred HHHHHhhcCCceeccceeEEeeeeeecc-cccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhc--CCceEE-ecc
Confidence 2 111 4578999999974 799999999999988 4446677777777 5544432 234455 443
Q ss_pred Ee-c-CCCCCC---CCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhh
Q 043727 229 IV-N-QDPPAL---SDRSIILEAEVALKELNLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 229 ~~-~-~~p~~~---~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~ 272 (275)
.. . +++|.. .+.++...+..+.++.+.+..+...+|++|..++-
T Consensus 324 ~~~~~~~~~~t~~~~s~p~w~~~~~a~~~~~~k~~~~i~~gstdsr~~r 372 (420)
T KOG2275|consen 324 QKVILDYPPVTPTDDSNPFWTAFAGALKDEGGKGYPEIGPGSTDSRHIR 372 (420)
T ss_pred CcccCCCCCCCCCCCCChHHHHHHHHHHHhcCccceeecccccccchhh
Confidence 32 1 344332 24568888998999888776666677899998764
No 50
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.79 E-value=3.2e-18 Score=159.58 Aligned_cols=231 Identities=11% Similarity=0.084 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|+++++.|++.|++.+.+++++|.|++++|||. |+.|+++++.... . .+ +|+.++
T Consensus 121 gg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~-----g~~G~~~l~~~~~----~---~~------------~~~~~d 176 (466)
T PRK07318 121 GPTMAAYYALKIIKELGLPLSKKVRFIVGTDEES-----GWKCMDYYFEHEE----A---PD------------FGFSPD 176 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccEEEEEEccccc-----CchhHHHHHHhCC----C---CC------------EEEEeC
Confidence 4799999999999999988889999999999998 5689999875321 0 00 011111
Q ss_pred C---CCcchhhc---------cCCCceEEEEeecccccccc--cCCCceE-----------------EEEeeecc-----
Q 043727 83 H---NDLSSVFL---------KKGSYSAFVELQIEQGLILE--EEGTSIV-----------------IVTAIAAS----- 126 (275)
Q Consensus 83 ~---~~~~~~~~---------~~~~v~~~~~~Hie~g~~le--~~~~~~g-----------------vv~~~~G~----- 126 (275)
. ....++.. .....+..+ ...+.|.... +...... +..++||.
T Consensus 177 ~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~ 255 (466)
T PRK07318 177 AEFPIINGEKGITTFDLVHFEGENEGDYVL-VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEG 255 (466)
T ss_pred CCCcEEEEEeeeEEEEEEeccccCCCCcee-EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecC
Confidence 0 00011000 000000011 1111221000 0000000 11245664
Q ss_pred eEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHHH------HHH------------------hhC--CCCeEEEEEEE
Q 043727 127 ASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVEK------HVL------------------ESG--SIDTVGTVGIL 177 (275)
Q Consensus 127 ~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~~------~~~------------------~~~--~~~~~~tvg~i 177 (275)
.|++|+++|+++|++ .|+.| |..+++++.+|+. +.. ..+ .+..++|+|.|
T Consensus 256 ~~~~i~v~G~aaH~s-~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i 334 (466)
T PRK07318 256 GKLVLTVIGKSAHGS-TPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVF 334 (466)
T ss_pred CEEEEEEEeeEcccC-CCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEE
Confidence 489999999999985 89888 9999999998863 110 001 12458999999
Q ss_pred EeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC--CCCCHHHHHHHHHHHHH
Q 043727 178 ELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP--ALSDRSIILEAEVALKE 252 (275)
Q Consensus 178 ~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~--~~~d~~l~~~~~~~~~~ 252 (275)
++++ .. +|++++| .+.+..+++.++|++.+++ .+ + +++....+|| ...|.++++.+++++++
T Consensus 335 ~gg~-~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~----~~--~-~~~~~~~~~p~~~~~d~~lv~~l~~a~~~ 401 (466)
T PRK07318 335 SFDE-EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV----TG--V-ELSEHEHQKPHYVPKDDPLVKTLLKVYEK 401 (466)
T ss_pred EEec-Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh----cC--e-EEEEccCCCceeeCCCCHHHHHHHHHHHH
Confidence 9753 21 7999999 6778888898888887654 34 5 5555455666 34578899999999986
Q ss_pred -hCCCccccCCCCcchHHhhh
Q 043727 253 -LNLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 253 -~g~~~~~~~~~~g~Da~~~~ 272 (275)
.|.+.....++++||+++|.
T Consensus 402 ~~g~~~~~~~~~ggtDa~~~~ 422 (466)
T PRK07318 402 QTGLKGEEQVIGGGTYARLLK 422 (466)
T ss_pred HhCCCCCeeEEcchHhHhhCC
Confidence 57766666678899999985
No 51
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.79 E-value=8.2e-18 Score=154.93 Aligned_cols=212 Identities=12% Similarity=0.068 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|+++|++.+.+++++|.|++++|||. |+.|++.+.... +..
T Consensus 121 gg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~-----g~~G~~~~~~~~-------------------------~~~- 169 (421)
T PRK08596 121 GGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEV-----GEAGTLQCCERG-------------------------YDA- 169 (421)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcEEEEEEecccc-----CCcCHHHHHhcC-------------------------CCC-
Confidence 4799999999999999988899999999999997 457888764311 100
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEec----------CCCCCcchhhH---HH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGN----------EGHAGAVLMPN---SL 149 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~----------~~Hag~~p~~g---i~ 149 (275)
+ +.++.|+ +.. .+.+++|..+++++++|+ .+|+| .|+.| +.
T Consensus 170 --------------d--~~i~~ep------~~~---~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~-~p~~G~nai~ 223 (421)
T PRK08596 170 --------------D--FAVVVDT------SDL---HMQGQGGVITGWITVKSPQTFHDGTRRQMIHAG-GGLFGASAIE 223 (421)
T ss_pred --------------C--EEEECCC------CCC---ccccccceeeEEEEEEeeccccccccccccccc-CCccCcCHHH
Confidence 0 1122222 111 135677887777777776 47886 68877 99
Q ss_pred HHHHHHHHHHHHHHhh------C---CCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHH
Q 043727 150 AAAEVALAVEKHVLES------G---SIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIA 217 (275)
Q Consensus 150 aaa~~i~~l~~~~~~~------~---~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~ 217 (275)
.+++++.+|+.+.... . ....++|++.|++ |...|+||++|++.+| .+.++.+++.++|++.+++.+
T Consensus 224 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~g-G~~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~ 302 (421)
T PRK08596 224 KMMKIIQSLQELERHWAVMKSYPGFPPGTNTINPAVIEG-GRHAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVA 302 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCcceeeeeeeC-CCCCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998764211 0 1236899999997 4799999999999999 777889999999999988754
Q ss_pred Hh------cCCCEEEEE---E----ecCCCCCC--CCHHHHHHHHHHHHHh-CCCccccCCCCcchHHhhhc
Q 043727 218 KN------RGVTLSEFK---I----VNQDPPAL--SDRSIILEAEVALKEL-NLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 218 ~~------~g~~~~~i~---~----~~~~p~~~--~d~~l~~~~~~~~~~~-g~~~~~~~~~~g~Da~~~~~ 273 (275)
.. ..+++ ++. . ...+|++. .+.++++.+.+++++. |.+.....+++++|++++..
T Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~tD~~~~~~ 373 (421)
T PRK08596 303 AADPWLRENPPQF-KWGGESMIEDRGEIFPSLEIDSEHPAVKTLSSAHESVLSKNAILDMSTTVTDGGWFAE 373 (421)
T ss_pred hcChhhhhCCcee-EEecccccccccccCCCccCCCCchHHHHHHHHHHHHhCCCCeeeEEeeecchhhhhh
Confidence 31 12233 321 0 12356654 4578999999988875 76665555678899999864
No 52
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.79 E-value=8.3e-18 Score=151.28 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|. +++++|.|++++|||.+. +..|++.+..... . .+.
T Consensus 98 g~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~---~~~G~~~~~~~~~-----------~-----------~~~-- 146 (352)
T PRK13007 98 SGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEA---EANGLGRLAREHP-----------E-----------WLA-- 146 (352)
T ss_pred HHHHHHHHHHHHhh----ccCCCeEEEEEecccccC---CcccHHHHHHhcc-----------c-----------ccC--
Confidence 58899999999993 367899999999999731 1146665532110 0 011
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE 159 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~ 159 (275)
.+..+- .|+.+ ..++.+++|..|++|+++|+++|+| .|+.+ +..+++++.+++
T Consensus 147 -------------~d~~i~--------~ep~~--~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~~~~~~i~~l~ 202 (352)
T PRK13007 147 -------------GDFAIL--------LEPTD--GVIEAGCQGTLRVTVTFHGRRAHSA-RSWLGENAIHKAAPVLARLA 202 (352)
T ss_pred -------------CCEEEE--------ecCCC--CceEeeccceEEEEEEEEecccccC-CCccCcCHHHHHHHHHHHHH
Confidence 111111 12222 2356789999999999999999997 68777 999999999998
Q ss_pred HHHHhhC--CC---CeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEec
Q 043727 160 KHVLESG--SI---DTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVN 231 (275)
Q Consensus 160 ~~~~~~~--~~---~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~ 231 (275)
++..+.. .+ ..+++++.|++ |.+.|+||++|++++| .+.++.+++.++|++.++..+ ++ ++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~g-G~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~-----~~-~~~~-- 273 (352)
T PRK13007 203 AYEPREVVVDGLTYREGLNAVRISG-GVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGFA-----EV-EVTD-- 273 (352)
T ss_pred HhcccccccCCCCccceeEeEeEec-CCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhcccc-----EE-Eeec--
Confidence 7643211 11 24789999996 5799999999999999 677888999999988775432 56 5543
Q ss_pred CCCC--CCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 232 QDPP--ALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 232 ~~p~--~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
..++ ...+.++++.+.++ +|... .+..+++|++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~---~g~~~--~~~~g~td~~~~~~ 312 (352)
T PRK13007 274 LAPGARPGLDHPAAAALVAA---VGGEV--RAKYGWTDVARFSA 312 (352)
T ss_pred ccCCCCCCCCCHHHHHHHHH---hCCCC--ccccccchHHHHHh
Confidence 2233 23456677776665 44332 23467899998864
No 53
>PRK08201 hypothetical protein; Provisional
Probab=99.78 E-value=1.7e-17 Score=154.33 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.+++.|++.+..++++|.|++++|||. |+.|++.++.+.. .. +.++
T Consensus 123 gglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~--~~--------------------~~~d 175 (456)
T PRK08201 123 GQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEI-----GSPNLDSFVEEEK--DK--------------------LAAD 175 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc-----CCccHHHHHHhhH--Hh--------------------ccCC
Confidence 4789999999999887767788999999999997 4567776643210 00 1001
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCC--CCCcchhhH---HHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEG--HAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~--Hag~~p~~g---i~aaa~~i~~ 157 (275)
...+.++ + ....+ ...++.++||..|++|+++|+++ |+|.+|..+ |..+++++.+
T Consensus 176 ~~ii~e~-----------------~-~~~~~--~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~ 235 (456)
T PRK08201 176 VVLISDT-----------------T-LLGPG--KPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLAS 235 (456)
T ss_pred EEEEeCC-----------------C-cCCCC--CEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHh
Confidence 0111111 0 00001 12477899999999999999998 987655543 9999999998
Q ss_pred HHHHH---------------------------------Hh------h--CC---------CCeEEEEEEEEeeC---CCC
Q 043727 158 VEKHV---------------------------------LE------S--GS---------IDTVGTVGILELHS---GAI 184 (275)
Q Consensus 158 l~~~~---------------------------------~~------~--~~---------~~~~~tvg~i~~g~---~~~ 184 (275)
|+++. .+ . .+ ...++|++.|++|. +..
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~~~~~ 315 (456)
T PRK08201 236 LHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQGEGTK 315 (456)
T ss_pred cCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCCCCCCc
Confidence 86421 00 0 00 02478999998641 247
Q ss_pred ceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCC--CCHHHHHHHHHHHHHh-CCCcc
Q 043727 185 NSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPAL--SDRSIILEAEVALKEL-NLTYK 258 (275)
Q Consensus 185 NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~--~d~~l~~~~~~~~~~~-g~~~~ 258 (275)
|+||++|++.+| .+.++.+++.++|++.+++.. ..++++ ++.....+||+. .|.++++.+.+++++. |.+..
T Consensus 316 NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~-~~~~~v-~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~g~~~~ 393 (456)
T PRK08201 316 TVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHT-PAGVRV-TIRRFDKGPAFVAPIDHPAIQAAARAYEAVYGTEAA 393 (456)
T ss_pred eEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEE-EEEECCCcCceecCCCCHHHHHHHHHHHHHhCCCce
Confidence 999999999999 777889999999998887532 234556 555444556653 4568999999988874 65543
Q ss_pred ccCCCCcc---hHHhh
Q 043727 259 FMISRAYH---DSPFM 271 (275)
Q Consensus 259 ~~~~~~g~---Da~~~ 271 (275)
... .+++ |+.++
T Consensus 394 ~~~-~gg~~~~~~~~~ 408 (456)
T PRK08201 394 FTR-MGGSIPVVETFS 408 (456)
T ss_pred ecC-CCCcHHHHHHHH
Confidence 332 3344 56554
No 54
>PRK09104 hypothetical protein; Validated
Probab=99.75 E-value=9.5e-17 Score=149.67 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|+|+++|++.+.+++++|.|++++|||. |+.|.+.+..... +. +.++
T Consensus 131 g~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~--~~--------------------~~~d 183 (464)
T PRK09104 131 GQLMTFVEACRAWKAVTGSLPVRVTILFEGEEES-----GSPSLVPFLEANA--EE--------------------LKAD 183 (464)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-----CCccHHHHHHhhH--Hh--------------------cCCC
Confidence 4799999999999998777788999999999997 4567766543110 00 0000
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEe--cCCCCCcchhhH---HHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEG--NEGHAGAVLMPN---SLAAAEVALA 157 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G--~~~Hag~~p~~g---i~aaa~~i~~ 157 (275)
...+.+ .+ .. .+....++.+++|..|++++++| +++|+|..|..+ +..+++++.+
T Consensus 184 ~~iv~E-----------------~~-~~--~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~ 243 (464)
T PRK09104 184 VALVCD-----------------TG-MW--DRETPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAG 243 (464)
T ss_pred EEEEeC-----------------CC-CC--CCCCeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHh
Confidence 000001 00 00 01122467899999999999999 789997556766 8999999888
Q ss_pred HHHHH-----------------------Hhh-----------C---C-------------CCeEEEEEEEEeeC---CCC
Q 043727 158 VEKHV-----------------------LES-----------G---S-------------IDTVGTVGILELHS---GAI 184 (275)
Q Consensus 158 l~~~~-----------------------~~~-----------~---~-------------~~~~~tvg~i~~g~---~~~ 184 (275)
|++.. +.. . + ...++|++.|++|. ++.
T Consensus 244 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~~~~~ 323 (464)
T PRK09104 244 LHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYTGEGFK 323 (464)
T ss_pred ccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCCCCCCc
Confidence 75420 000 0 0 02578999999752 257
Q ss_pred ceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC--CCCHHHHHHHHHHHHHh-CCCcc
Q 043727 185 NSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA--LSDRSIILEAEVALKEL-NLTYK 258 (275)
Q Consensus 185 NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~--~~d~~l~~~~~~~~~~~-g~~~~ 258 (275)
|+||++|++++| .+.++.+++.++|++.+++.. ..+.++ ++......||. ..+.++++.+.+++++. +.+..
T Consensus 324 nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~-~~~~~v-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 401 (464)
T PRK09104 324 TVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARL-PADCSV-EFHDHGGSPAIALPYDSPALAAAKAALSDEWGKPAV 401 (464)
T ss_pred cEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEE-EEEecCCCCceECCCCCHHHHHHHHHHHHHhCCCce
Confidence 999999999999 677888999999998886531 123444 44433345554 44678999999998874 65544
Q ss_pred ccCCCCcc-hHHhh
Q 043727 259 FMISRAYH-DSPFM 271 (275)
Q Consensus 259 ~~~~~~g~-Da~~~ 271 (275)
...+++++ |++.|
T Consensus 402 ~~~~~g~~~~~~~~ 415 (464)
T PRK09104 402 LIGSGGSIPIVGDF 415 (464)
T ss_pred ecCCCCcHHHHHHH
Confidence 44444443 34444
No 55
>PRK07907 hypothetical protein; Provisional
Probab=99.75 E-value=6e-17 Score=150.39 Aligned_cols=210 Identities=13% Similarity=0.039 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|+++| +.+++++|.|++++|||. |+.|+++++.... +.+ +.|.+ +
T Consensus 127 g~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~--~~~----~~d~~----------i--- 179 (449)
T PRK07907 127 GGIAMHLAALRAL---GGDLPVGVTVFVEGEEEM-----GSPSLERLLAEHP--DLL----AADVI----------V--- 179 (449)
T ss_pred HHHHHHHHHHHHh---ccCCCCcEEEEEEcCccc-----CCccHHHHHHhch--Hhh----cCCEE----------E---
Confidence 4799999999999 345678999999999997 4578888754211 000 11100 0
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCc---eEEEEeeecceEEEEEEE--ecCCCCCcchhhH---HHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTS---IVIVTAIAASASIKVDFE--GNEGHAGAVLMPN---SLAAAEV 154 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~---~gvv~~~~G~~~~~i~i~--G~~~Hag~~p~~g---i~aaa~~ 154 (275)
+.|+++.. ..++.++||..|++++++ |+++|+|.++..+ +..++++
T Consensus 180 --------------------------v~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~ 233 (449)
T PRK07907 180 --------------------------IADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRL 233 (449)
T ss_pred --------------------------EecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHH
Confidence 11111111 136678999999999999 9999997433433 8889999
Q ss_pred HHHHHHHHHh--------hC----------------------------------CCCeEEEEEEEEee--CCCCceeCce
Q 043727 155 ALAVEKHVLE--------SG----------------------------------SIDTVGTVGILELH--SGAINSIPSK 190 (275)
Q Consensus 155 i~~l~~~~~~--------~~----------------------------------~~~~~~tvg~i~~g--~~~~NvIP~~ 190 (275)
+.+|++...+ .. -...++|++.|+++ +++.|+||++
T Consensus 234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~ 313 (449)
T PRK07907 234 LATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPS 313 (449)
T ss_pred HHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCc
Confidence 8888643100 00 01347889999863 3588999999
Q ss_pred EEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCC--CCHHHHHHHHHHHHHh-CCCccccCCCC
Q 043727 191 SHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPAL--SDRSIILEAEVALKEL-NLTYKFMISRA 264 (275)
Q Consensus 191 a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~--~d~~l~~~~~~~~~~~-g~~~~~~~~~~ 264 (275)
|++++| .+.++.+++.++|++.++... .++.++ +++....++|+. .|.++++.+++++++. |.++.....++
T Consensus 314 a~~~~diR~~p~~~~e~v~~~l~~~l~~~~-~~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g 391 (449)
T PRK07907 314 ARARLSLRVAPGQDAAEAQDALVAHLEAHA-PWGAHV-TVERGDAGQPFAADASGPAYDAARAAMREAWGKDPVDMGMGG 391 (449)
T ss_pred eEEEEEEEcCCCCCHHHHHHHHHHHHHhcC-CCCcEE-EEEECCCcCceeCCCCCHHHHHHHHHHHHHhCCCceecCCCC
Confidence 999999 677889999999998887642 235667 776554555543 4678999999988875 76554444444
Q ss_pred cch
Q 043727 265 YHD 267 (275)
Q Consensus 265 g~D 267 (275)
+.+
T Consensus 392 ~~~ 394 (449)
T PRK07907 392 SIP 394 (449)
T ss_pred cHH
Confidence 433
No 56
>PRK07205 hypothetical protein; Provisional
Probab=99.74 E-value=1.7e-16 Score=147.12 Aligned_cols=223 Identities=16% Similarity=0.102 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|++++|.|++.|++.+.+++++|.|++++|||. ++.|++.+..... . .+ +++.++
T Consensus 119 gglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~-----g~~g~~~~~~~~~----~---~~------------~~~~~~ 174 (444)
T PRK07205 119 GPSMAALYAVKALLDAGVQFNKRIRFIFGTDEET-----LWRCMNRYNEVEE----Q---AT------------MGFAPD 174 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEECCccc-----CcccHHHHHhCCC----C---CC------------eeECCC
Confidence 4799999999999999998899999999999998 4567777754211 0 00 011111
Q ss_pred C---CCcchhhccCCCceEEEEeecccccc--cccCCCceEEEE---ee--------------ec----ceEEEEEEEec
Q 043727 83 H---NDLSSVFLKKGSYSAFVELQIEQGLI--LEEEGTSIVIVT---AI--------------AA----SASIKVDFEGN 136 (275)
Q Consensus 83 ~---~~~~~~~~~~~~v~~~~~~Hie~g~~--le~~~~~~gvv~---~~--------------~G----~~~~~i~i~G~ 136 (275)
. ..+.+ ++. ..+.+.-++... ...+. -.+++. .+ +| ..+++|+++|+
T Consensus 175 ~~~~v~~~e----kG~--~~~~i~~~~~~~~~~~~g~-~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~ 247 (444)
T PRK07205 175 SSFPLTYAE----KGL--LQAKLVGPGSDQLELEVGQ-AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGK 247 (444)
T ss_pred CCCceEEEE----ece--EEEEEEeCCccceEEecCC-cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeE
Confidence 0 00000 000 111111111000 00000 000000 12 23 13459999999
Q ss_pred CCCCCcchhhH---HHHHHHHHHHHHHHH------Hhh--------------C--CCCeEEEEEEEEeeCCCCceeCceE
Q 043727 137 EGHAGAVLMPN---SLAAAEVALAVEKHV------LES--------------G--SIDTVGTVGILELHSGAINSIPSKS 191 (275)
Q Consensus 137 ~~Hag~~p~~g---i~aaa~~i~~l~~~~------~~~--------------~--~~~~~~tvg~i~~g~~~~NvIP~~a 191 (275)
++|++ .|+.| |..+++++.+++... ... . ....++|+|. .|+||++|
T Consensus 248 ~~Hss-~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a 319 (444)
T PRK07205 248 SVHAK-DAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKS 319 (444)
T ss_pred EcccC-CCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeEE-------EEEECCEE
Confidence 99996 67676 888889888876431 100 0 0123445543 58999999
Q ss_pred EEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC--CCCCHHHHHHHHHHHHHh-CCCccccCCCCc
Q 043727 192 HLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP--ALSDRSIILEAEVALKEL-NLTYKFMISRAY 265 (275)
Q Consensus 192 ~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~--~~~d~~l~~~~~~~~~~~-g~~~~~~~~~~g 265 (275)
++++| .+.++.+++.++|++++++ .++++ .....++| ...|.++++.+++++++. |.+.....++++
T Consensus 320 ~~~ld~R~~p~~~~e~v~~~i~~~~~~----~~v~~---~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~gg~ 392 (444)
T PRK07205 320 EIRIDIRIPVLADKEKLVQQLSQKAQE----YGLTY---EEFDYLAPLYVPLDSELVSTLMSVYQEKTGDDSPAQSSGGA 392 (444)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHH----cCcEE---EEecCCCceeeCCCcHHHHHHHHHHHHHhCCCCceEEeccH
Confidence 99999 6778888898888887643 34444 33334555 345788999999999874 665555567778
Q ss_pred chHHhh
Q 043727 266 HDSPFM 271 (275)
Q Consensus 266 ~Da~~~ 271 (275)
+|+.++
T Consensus 393 ~~~~~~ 398 (444)
T PRK07205 393 TFARTM 398 (444)
T ss_pred HHHHhC
Confidence 888765
No 57
>PRK07079 hypothetical protein; Provisional
Probab=99.73 E-value=1.8e-16 Score=147.92 Aligned_cols=217 Identities=10% Similarity=0.048 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHHHHc-CCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 3 KLCLGDIDIINIVIRS-GFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~-~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
.|++++|.|++.|++. +.++.++|.|++++|||. |+.|++.++.+.. . .+.+
T Consensus 130 gg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~-----g~~G~~~l~~~~~--~--------------------~~~~ 182 (469)
T PRK07079 130 GQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEI-----GSPGLAEVCRQHR--E--------------------ALAA 182 (469)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-----CCccHHHHHHHhH--H--------------------hcCC
Confidence 4789999999998764 477889999999999998 5679988764321 0 0111
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEec--CCCCCcchhhH-----HHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGN--EGHAGAVLMPN-----SLAAAEV 154 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~--~~Hag~~p~~g-----i~aaa~~ 154 (275)
+...+.+ ++ ..+.. ...++.++||..|++|+++|+ +.|++ ++.+ +..++.+
T Consensus 183 d~~iv~e-----------------~~-~~~~~--~~~i~~g~kG~~~~~v~v~G~~~~~hs~--~~~g~~~nai~~l~~a 240 (469)
T PRK07079 183 DVLIASD-----------------GP-RLSAE--RPTLFLGSRGAVNFRLRVNLRDGAHHSG--NWGGLLRNPGTVLAHA 240 (469)
T ss_pred CEEEEeC-----------------CC-ccCCC--CeEEEEecceEEEEEEEEeeCCCCCCCC--ccccccCCHHHHHHHH
Confidence 1000111 00 00011 123778999999999999998 45664 3322 6666666
Q ss_pred HHHHHHH---------------------HHhhC-------------------------CCCeEEEEEEEEeeC--CCCce
Q 043727 155 ALAVEKH---------------------VLESG-------------------------SIDTVGTVGILELHS--GAINS 186 (275)
Q Consensus 155 i~~l~~~---------------------~~~~~-------------------------~~~~~~tvg~i~~g~--~~~Nv 186 (275)
|.++.+. ..... ....++|++.|++|. .+.|+
T Consensus 241 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~~~~~Nv 320 (469)
T PRK07079 241 IASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNPDAPVNA 320 (469)
T ss_pred HHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCCCCcceE
Confidence 6665321 00000 012478999999752 25899
Q ss_pred eCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEecCCCCC--CCCHHHHHHHHHHHHHh-CCCccc
Q 043727 187 IPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGV-TLSEFKIVNQDPPA--LSDRSIILEAEVALKEL-NLTYKF 259 (275)
Q Consensus 187 IP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~-~~~~i~~~~~~p~~--~~d~~l~~~~~~~~~~~-g~~~~~ 259 (275)
||++|++++| .+.++.+++.++|++++++. +. .+ +++....++|+ ..+.++++.+++++++. |.++..
T Consensus 321 VP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~----~~~~v-~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~ 395 (469)
T PRK07079 321 IPGSARAVCQLRFVVGTDWENLAPHLRAHLDAH----GFPMV-EVTVERGSPATRLDPDDPWVRWALASIARTTGKKPAL 395 (469)
T ss_pred ecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc----CCCCe-EEEEeCCCCceecCCCCHHHHHHHHHHHHHhCCCCce
Confidence 9999999999 67788999999999888753 22 35 56655556664 45678999998888875 655443
Q ss_pred cC-CCCcchHHhhhc
Q 043727 260 MI-SRAYHDSPFMAR 273 (275)
Q Consensus 260 ~~-~~~g~Da~~~~~ 273 (275)
.+ .++++|+++|.+
T Consensus 396 ~~~~~g~~d~~~~~~ 410 (469)
T PRK07079 396 LPNLGGSLPNDVFAD 410 (469)
T ss_pred ecCCCcchhHHHHHH
Confidence 33 455668877753
No 58
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.73 E-value=4.7e-16 Score=144.89 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCC
Q 043727 4 LCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKH 83 (275)
Q Consensus 4 Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~ 83 (275)
|++++|.|+++|++.+++++++|.|++++|||. |+.|++.++.... . . + +.+.++.
T Consensus 121 ~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~g~~~~~~~~~----~---~--d----------~~~~~d~ 176 (466)
T TIGR01886 121 PSLAAYYAMKILKELGLPPSKKIRFVVGTNEET-----GWVDMDYYFKHEE----T---P--D----------FGFSPDA 176 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEECcccc-----CcccHHHHHhcCc----C---C--C----------EEEECCC
Confidence 689999999999999999999999999999998 5778888765321 0 0 1 1111110
Q ss_pred ---CCcchhhccCCCce-------------EEEEeecccccccccCCCceEEEE---------------eeecce-----
Q 043727 84 ---NDLSSVFLKKGSYS-------------AFVELQIEQGLILEEEGTSIVIVT---------------AIAASA----- 127 (275)
Q Consensus 84 ---~~~~~~~~~~~~v~-------------~~~~~Hie~g~~le~~~~~~gvv~---------------~~~G~~----- 127 (275)
....+ ++... ....+|-.+...+-+.... .++. +++|..
T Consensus 177 ~~~~~~ge----~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~ 251 (466)
T TIGR01886 177 EFPIINGE----KGNFTLELSFKGDNKGDYVLDSFKAGLAENMVPQVAR-AVISGPDAEALKAAYESFLADKASLDGSFE 251 (466)
T ss_pred CceeEEEe----cceEEEEEEEecCCCCceeEEEEEcCCcCCccCCeeE-EEEecCCHHHHHHHHHHHHhhccCceEEEE
Confidence 00111 11111 1112221111111111100 0111 245543
Q ss_pred ----EEEEEEEecCCCCCcchhhH---HHHHHHHHHHH----------HHHHHh--------------hC--CCCeEEEE
Q 043727 128 ----SIKVDFEGNEGHAGAVLMPN---SLAAAEVALAV----------EKHVLE--------------SG--SIDTVGTV 174 (275)
Q Consensus 128 ----~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l----------~~~~~~--------------~~--~~~~~~tv 174 (275)
|++|+++|+++|++ .|+.| |..+++++..+ +.+... .+ ....++|+
T Consensus 252 ~~~~~~~i~v~G~~aH~s-~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nv 330 (466)
T TIGR01886 252 INDESATIVLIGKGAHGA-APQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNA 330 (466)
T ss_pred EeCCEEEEEEEeeEcccC-CCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEe
Confidence 89999999999995 89888 88888877762 222110 01 12468999
Q ss_pred EEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC-CCCCHHHHHHHHHHH
Q 043727 175 GILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP-ALSDRSIILEAEVAL 250 (275)
Q Consensus 175 g~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~-~~~d~~l~~~~~~~~ 250 (275)
|.|++| .. | ++|++.+| ++.++.+++.++|++.++. .+++ ++......|. ...+.++++.+.+++
T Consensus 331 gvI~gG-~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~-----~~~v-~~~~~~~~P~~~~~ds~lv~~l~~a~ 399 (466)
T TIGR01886 331 GMFDFD-HA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG-----IVDV-TYNGHFEEPHYVPGSDPLVQTLLKVY 399 (466)
T ss_pred EEEEEe-cC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc-----ccEE-EEecccCCCcccCCCCHHHHHHHHHH
Confidence 999985 33 4 89999999 7778899999998887753 2344 4322122222 234568999999999
Q ss_pred HHh-CCCccccCCCCcchHHhhh
Q 043727 251 KEL-NLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 251 ~~~-g~~~~~~~~~~g~Da~~~~ 272 (275)
++. |.+.....++++||+++|.
T Consensus 400 ~~v~G~~~~~~~~~ggTDa~~~~ 422 (466)
T TIGR01886 400 EKHTGKKGHEVIIGGGTYGRLLE 422 (466)
T ss_pred HHHhCCCCceeeecCccHHHhcc
Confidence 875 6555455678899999985
No 59
>PRK06156 hypothetical protein; Provisional
Probab=99.72 E-value=4.8e-16 Score=146.70 Aligned_cols=136 Identities=7% Similarity=0.062 Sum_probs=100.6
Q ss_pred EEEEEEEecCCCCCcchhhH---HHHHHHHHHHHHHHHH------------h---------------hC--CCCeEEEEE
Q 043727 128 SIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVEKHVL------------E---------------SG--SIDTVGTVG 175 (275)
Q Consensus 128 ~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~~~~~------------~---------------~~--~~~~~~tvg 175 (275)
|++|+++|+++|++ .|+.| |..+++++.+++++.. . .+ .+..+++++
T Consensus 300 ~~~I~v~Gk~aHsS-~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~ 378 (520)
T PRK06156 300 DVTITVTGKSAHSS-TPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPT 378 (520)
T ss_pred eEEEEEEeEECCCC-CCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeee
Confidence 99999999999996 88877 9999999999875210 0 00 023456677
Q ss_pred EEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC-CCCHHHHHHHHHHHH
Q 043727 176 ILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA-LSDRSIILEAEVALK 251 (275)
Q Consensus 176 ~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~-~~d~~l~~~~~~~~~ 251 (275)
.|.+++ ++|++++| .+.+..+++.++|++.++..+..+++++ ++......|.. ..|.++++.++++++
T Consensus 379 ~I~gg~-------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~~gv~v-e~~~~~~~p~~~~~d~~lv~~l~~a~~ 450 (520)
T PRK06156 379 VVGQDD-------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQAKHQVAL-DIDYYWGEPMVRDPKGPWLKTLLDVFG 450 (520)
T ss_pred EEEEeC-------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhhcCceE-EEeecCCCceeeCCCCHHHHHHHHHHH
Confidence 776532 58999999 6778899999999999988776778887 77643323322 336789999999888
Q ss_pred Hh-CCCccccCCCCcchHHhhh
Q 043727 252 EL-NLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 252 ~~-g~~~~~~~~~~g~Da~~~~ 272 (275)
+. |.++....++++||++++.
T Consensus 451 ~~~G~~~~~~~~~ggTDa~~~~ 472 (520)
T PRK06156 451 HFTGLDAKPVAIAGSTNAKLFP 472 (520)
T ss_pred HHhCCCCceeeecChhhhhhCC
Confidence 75 7766666778899999874
No 60
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.63 E-value=3.6e-14 Score=131.47 Aligned_cols=224 Identities=14% Similarity=0.097 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCC
Q 043727 4 LCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKH 83 (275)
Q Consensus 4 Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~ 83 (275)
|+++++.|++.|++.+.+++++|.|++++|||. |+.|++.++.... . .| +++.++.
T Consensus 110 ~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~g~~~~l~~~~----~---~~------------~~~~~d~ 165 (447)
T TIGR01887 110 PTIAALYAMKILKELGLKLKKKIRFIFGTDEET-----GWACIDYYFEHEE----A---PD------------IGFTPDA 165 (447)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEECCccc-----CcHhHHHHHHhcC----C---CC------------EEEeCCC
Confidence 689999999999999998899999999999998 6778887754211 0 00 0111100
Q ss_pred ---CCcchhhccCCCceEEEEeecccccc----------cccCCCc---eEEEEeee-------------------cce-
Q 043727 84 ---NDLSSVFLKKGSYSAFVELQIEQGLI----------LEEEGTS---IVIVTAIA-------------------ASA- 127 (275)
Q Consensus 84 ---~~~~~~~~~~~~v~~~~~~Hie~g~~----------le~~~~~---~gvv~~~~-------------------G~~- 127 (275)
..+.+ ++ ..++++.+..+.. -++++.. .-++.+++ |..
T Consensus 166 ~~~~~~~e----~g--~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (447)
T TIGR01887 166 EFPIIYGE----KG--IVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFE 239 (447)
T ss_pred CcceEEEe----cC--eEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEE
Confidence 01111 11 2344443321110 0111111 11233344 555
Q ss_pred ----EEEEEEEecCCCCCcchhhH---HHHHHHHHHHHH--HHHHh---------------------h-C--CCCeEEEE
Q 043727 128 ----SIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVE--KHVLE---------------------S-G--SIDTVGTV 174 (275)
Q Consensus 128 ----~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~--~~~~~---------------------~-~--~~~~~~tv 174 (275)
|++|+++|+++|++ .|+.| |..+++++.+++ +...+ . + ....++|+
T Consensus 240 ~~~~~~~i~v~G~~aHss-~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nv 318 (447)
T TIGR01887 240 VNDGTATITLEGKSAHGS-APEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNV 318 (447)
T ss_pred ecCCEEEEEEEeeecccC-CCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEE
Confidence 89999999999985 79888 999999998876 21100 0 0 02357899
Q ss_pred EEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCC--CCHHHHHHHHHH
Q 043727 175 GILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPAL--SDRSIILEAEVA 249 (275)
Q Consensus 175 g~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~--~d~~l~~~~~~~ 249 (275)
|.|+++ +|++|++++| .+.++.+++.+++.+.+. +. . ++......+|.. .|.++++.+.++
T Consensus 319 g~I~~g------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~------~~-~-~~~~~~~~~p~~~~~~~~lv~~l~~~ 384 (447)
T TIGR01887 319 GVIDYE------NAEAGLIGLNVRYPVGNDPDTMLKNELAKES------GI-V-EVTENGYLKPLYVPKDDPLVQTLMKV 384 (447)
T ss_pred EEEEEe------CCcEEEEEEEEecCCCCCHHHHHHHHHHHhh------Cc-E-EEEEccCCCCeEECCCCHHHHHHHHH
Confidence 999964 3999999999 566666666555553221 22 3 333322334433 357899999999
Q ss_pred HHHh-CCCccccCCCCcchHHhhh
Q 043727 250 LKEL-NLTYKFMISRAYHDSPFMA 272 (275)
Q Consensus 250 ~~~~-g~~~~~~~~~~g~Da~~~~ 272 (275)
+++. |.+.....+.+++|+.++.
T Consensus 385 ~~~~~g~~~~~~~~~ggtda~~~~ 408 (447)
T TIGR01887 385 YEKQTGDEGTPVAIGGGTYARLME 408 (447)
T ss_pred HHHHhCCCCCeeEecchhhhhhCC
Confidence 9875 6655545567789998764
No 61
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.59 E-value=3.8e-14 Score=106.20 Aligned_cols=97 Identities=22% Similarity=0.191 Sum_probs=84.7
Q ss_pred EeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHHHHHHHhh-------CCCCeEEEEEEEEeeCCCCceeCce
Q 043727 121 TAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAVEKHVLES-------GSIDTVGTVGILELHSGAINSIPSK 190 (275)
Q Consensus 121 ~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l~~~~~~~-------~~~~~~~tvg~i~~g~~~~NvIP~~ 190 (275)
++++|..+++|+++|+++|+| .|+.+ +..+++++..|+.+..+. .....+++++.|++| ...|+||++
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s-~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG-~~~n~ip~~ 78 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSS-RPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGG-TAPNVIPDE 78 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETT-SGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEE-SSTTEESSE
T ss_pred CcCCCEEEEEEEEEeeccCCC-CccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccC-CcCCEECCE
Confidence 368999999999999999997 89888 999999999999874321 125689999999986 699999999
Q ss_pred EEEEEe---CCHhHHHHHHHHHHHHHHHHHHh
Q 043727 191 SHLEID---IDEKRRKTVIEKIHQSAITIAKN 219 (275)
Q Consensus 191 a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~ 219 (275)
|++++| ++.++.++++++|++.+++.+.+
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~~ 110 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEKIAKK 110 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHHhhhC
Confidence 999999 78899999999999999987754
No 62
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.58 E-value=2.4e-13 Score=126.93 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=68.1
Q ss_pred ecceEEEEEEEe-cCCCCCcchhhH----HHHHHHHHHHHHHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe--
Q 043727 124 AASASIKVDFEG-NEGHAGAVLMPN----SLAAAEVALAVEKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID-- 196 (275)
Q Consensus 124 ~G~~~~~i~i~G-~~~Hag~~p~~g----i~aaa~~i~~l~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d-- 196 (275)
+|..+|+|+++| +++|+|..|+.| |..+++++.++. ..++++++.|++ |++.|+||++|++.++
T Consensus 199 ~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~--------~~~~~~v~~i~G-G~~~NaIp~~a~a~i~~~ 269 (485)
T PRK15026 199 AGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHA--------EELDLRLIDFNG-GTLRNAIPREAFATIAVA 269 (485)
T ss_pred CCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhH--------hhCCeEEEEEeC-CCccCCCCCCcEEEEEEC
Confidence 688999999999 999999888887 788888877633 246889999997 5899999999999999
Q ss_pred -CCHhHHHHHHHHHHHHHHHHH
Q 043727 197 -IDEKRRKTVIEKIHQSAITIA 217 (275)
Q Consensus 197 -~~~e~~~~~~~~i~~~~~~~~ 217 (275)
.+.+..+++.+++.+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~ 291 (485)
T PRK15026 270 ADKVDALKSLVNTYQEILKNEL 291 (485)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777776665433
No 63
>PRK08554 peptidase; Reviewed
Probab=99.52 E-value=2.5e-13 Score=125.64 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCcee---CceEEEEEe--CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCC--CCCCHHHHHHHHHHHHHhCC
Q 043727 183 AINSI---PSKSHLEID--IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPP--ALSDRSIILEAEVALKELNL 255 (275)
Q Consensus 183 ~~NvI---P~~a~~~~d--~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~--~~~d~~l~~~~~~~~~~~g~ 255 (275)
.+|++ |++|++++| +.+.+.+++.++|+++++.. .+++++ +++.....|+ +..+.++++.++++++++|.
T Consensus 301 ~~n~~~i~~g~a~~~~DiR~~~~~~e~v~~~i~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~g~ 377 (438)
T PRK08554 301 TPNVYSFAEGKHVLKLDIRAMSYSKEDIERTLKEVLEFN--LPEAEV-EIRTNEKAGYLFTPPDEEIVKVALRVLKELGE 377 (438)
T ss_pred ccceEEecCCeEEEEEEEEecCCCHHHHHHHHHHHhhcc--CCCceE-EEEeccCCCCcCCCCChHHHHHHHHHHHHhCC
Confidence 56777 999999999 33356788888888877543 256667 7665433343 34578899999999998888
Q ss_pred CccccCCCCcchHHhhhc
Q 043727 256 TYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 256 ~~~~~~~~~g~Da~~~~~ 273 (275)
+......+|+||+++|+.
T Consensus 378 ~~~~~~~~GgtDa~~~~~ 395 (438)
T PRK08554 378 DAEPVEGPGASDSRYFTP 395 (438)
T ss_pred CcEEEecCCchHHHHHHh
Confidence 777777889999999964
No 64
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.33 E-value=2.9e-11 Score=109.47 Aligned_cols=212 Identities=17% Similarity=0.089 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCC
Q 043727 3 KLCLGDIDIINIVIRSG-FKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAK 81 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~-~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~ 81 (275)
+|++.++.++..|++.. -.++++|++.+++|||. |+.|++.+.- ..+ + ..+.|..
T Consensus 147 AGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~-----g~rg~~~~~~-----a~f----~----------a~~ay~i 202 (414)
T COG2195 147 AGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEI-----GGRGAANKDV-----ARF----L----------ADFAYTL 202 (414)
T ss_pred hHHHHHHHHHHHHhhcCccccccCeEEEecchHHh-----hhhhhhhccH-----Hhh----h----------cceeEec
Confidence 68999999999999762 23789999999999998 5678876521 111 0 0112211
Q ss_pred CCCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHHHHH
Q 043727 82 KHNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVALAV 158 (275)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i~~l 158 (275)
| ++....++....+...+++++.|+..|.++.+... +..+.+++..+
T Consensus 203 D------------------------------Gg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~~i~a~~~a~e~~~~~ 252 (414)
T COG2195 203 D------------------------------GGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGKMINALLLAAEFILEL 252 (414)
T ss_pred C------------------------------CCccCeeeeeccchheeeeeeeccCcCccchHHHHhhHHHhhhhhhhcC
Confidence 1 11112344556788899999999999998665544 44444444433
Q ss_pred HHHHHhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcC--CCEEEEEEecCC
Q 043727 159 EKHVLESGSIDTVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRG--VTLSEFKIVNQD 233 (275)
Q Consensus 159 ~~~~~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g--~~~~~i~~~~~~ 233 (275)
.. ...+..++.+.|..+.+ +..|.|.+++.+..+ ++....+..+..+++.+.+.++.++ ..+ +++....|
T Consensus 253 ~~---~~~~e~t~~~~Gv~~~~-~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~Y 327 (414)
T COG2195 253 PL---EEVPELTEGPEGVYHLG-DSTNSVEETSLNLAIIRDFDNLLFRARKDSMKDVVEEMAASLGKLAGA-ELEVKDSY 327 (414)
T ss_pred Cc---ccccccccccceEEecc-ccccchhhhhhhhhhhhhcchhHHHHhHHHHHHHHHHHHHHhhhccce-EEEEeccc
Confidence 21 11123567888999974 799999988888766 7777888888889999999888888 778 88888888
Q ss_pred CCCC--CCHHHHHHHHHHHHHhCCCccccCCCCcchHHhhhc
Q 043727 234 PPAL--SDRSIILEAEVALKELNLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 234 p~~~--~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~~~ 273 (275)
|.+. .++.+++.++++++++++++...++.||+|++.++.
T Consensus 328 p~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~gGtd~~~is~ 369 (414)
T COG2195 328 PGWKIKPDSPLVDLAKKAYKELGIKPKVKPIHGGTDGGVLSF 369 (414)
T ss_pred cCcCCCCCchHHHHHHHHHHHhCCCceEEEeecccchhhhhc
Confidence 8664 467899999999999998877788899999998763
No 65
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0023 Score=57.41 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCCCC
Q 043727 5 CLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKKHN 84 (275)
Q Consensus 5 v~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~~~ 84 (275)
|++.+.++++|++.|+.++-+|.+++-.-||. |+.|-..+... .+|. +.-..|-.
T Consensus 137 v~~wi~av~a~~~~g~~lpvnv~f~~EgmEEs-----gS~~L~~l~~~---------~kD~-----------~~~~vD~v 191 (473)
T KOG2276|consen 137 VLSWIHAVKALQQLGIDLPVNVVFVFEGMEES-----GSEGLDELIEK---------EKDK-----------FFKDVDFV 191 (473)
T ss_pred chHHHHHHHHHHHhCccccceEEEEEEechhc-----cCccHHHHHHH---------Hhhh-----------hhccCCEE
Confidence 57889999999999999999999999999997 34443333211 1121 11010000
Q ss_pred CcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEe--cCCCCCcchhhH-----HHHHHHHHHH
Q 043727 85 DLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEG--NEGHAGAVLMPN-----SLAAAEVALA 157 (275)
Q Consensus 85 ~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G--~~~Hag~~p~~g-----i~aaa~~i~~ 157 (275)
.+. +. . -+.. ....+-++.+|...|.|+|+| +--|+|. .+| +..+..++..
T Consensus 192 ciS---------dn-----y----Wlg~--kkPcltyGlRG~~yf~i~v~g~~~DlHSGv--fGG~~hE~m~dL~~~ms~ 249 (473)
T KOG2276|consen 192 CIS---------DN-----Y----WLGT--KKPCLTYGLRGVIYFQIEVEGPSKDLHSGV--FGGVVHEAMNDLVLVMSS 249 (473)
T ss_pred Eee---------Cc-----e----eccC--CCcccccccccceeEEEEEeeccccccccc--ccchhHHHHHHHHHHHHH
Confidence 110 00 1 1111 123455678999999999999 8889872 222 3333333333
Q ss_pred HHHH-----------------------HHh-------hC--------C-C-----------CeEEEEEEEEe---eCCCC
Q 043727 158 VEKH-----------------------VLE-------SG--------S-I-----------DTVGTVGILEL---HSGAI 184 (275)
Q Consensus 158 l~~~-----------------------~~~-------~~--------~-~-----------~~~~tvg~i~~---g~~~~ 184 (275)
|.+. .+. .. + + ..++++..|.+ ++++.
T Consensus 250 Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihgIeGaFs~pG~k 329 (473)
T KOG2276|consen 250 LVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHGIEGAFSGPGAK 329 (473)
T ss_pred hcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceecccceeeCCCce
Confidence 3210 000 00 0 0 12344444431 25688
Q ss_pred ceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcC--CCEEEEEEecCCCCCC--CCHHHHHHHHHHHHHh-CCC
Q 043727 185 NSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRG--VTLSEFKIVNQDPPAL--SDRSIILEAEVALKEL-NLT 256 (275)
Q Consensus 185 NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g--~~~~~i~~~~~~p~~~--~d~~l~~~~~~~~~~~-g~~ 256 (275)
-|||.++...+. .+..+.+.+.+.+.+.++..-.+.+ -+. ++.......|+. .+.+-+...+++.+.+ |.+
T Consensus 330 TVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l-~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gve 408 (473)
T KOG2276|consen 330 TVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKL-KVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVE 408 (473)
T ss_pred EEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCce-EEeecCCCCceecCCCchhHHHHHHHHHHhhCCC
Confidence 899999886554 5555555566666666665444333 244 555555555553 3455667777777764 654
No 66
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=97.62 E-value=5.8e-05 Score=61.18 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhc
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAG 51 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~ 51 (275)
.|++++|+.+|.|++.+.+++++|.|++|.+||. |++||++++.
T Consensus 29 sGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~-----gl~GS~~~~~ 72 (179)
T PF04389_consen 29 SGVAALLELARVLKELKPQPKRTIRFVFFDGEEQ-----GLLGSRAFVE 72 (179)
T ss_dssp HHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGG-----TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCccEEEEEeccccc-----CccchHHHHH
Confidence 6999999999999998888899999999999997 7999999974
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.19 E-value=0.00071 Score=54.90 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcc-hhhhhh
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCL-GSLLLA 50 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~-Gs~~~~ 50 (275)
.|+++++.+++.|++.+.+++++|.|++++|||. +.. |++.+.
T Consensus 39 ~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-----g~~~g~~~l~ 82 (189)
T PF01546_consen 39 GGIAAMLAALKALKESGDDLPGNIIFLFTPDEEI-----GSIGGAKHLL 82 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCG-----TSTTHHHHHH
T ss_pred ccHHHHHHHHHHHHhccccccccccccccccccC-----CCcchhhhhh
Confidence 5789999999999999999999999999999998 455 888764
No 68
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.19 E-value=0.0024 Score=60.00 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=67.7
Q ss_pred eEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCC--CCHHHHH
Q 043727 170 TVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPAL--SDRSIIL 244 (275)
Q Consensus 170 ~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~--~d~~l~~ 244 (275)
+++|+|.++.+ |++|.+.+| ++.+..+++.+.+++.++ ..++++ +....+||+. .|.++++
T Consensus 338 ~t~n~g~i~~~-------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~----~~~~~v---~~~~~~~p~~~~~d~plv~ 403 (477)
T TIGR01893 338 SSLNLGVVKTK-------ENKVIFTFLIRSSVESDKDYVTEKIESIAK----LAGARV---EVSAGYPSWQPDPQSNLLD 403 (477)
T ss_pred eeeeEEEEEEc-------CCEEEEEEEeCCCCchhHHHHHHHHHHHhh----hcCeEE---EEecCCCcccCCCCCHHHH
Confidence 57889999863 778888888 677888888888888775 345444 4445566654 4678999
Q ss_pred HHHHHHHHh-CCCccccCCCCcchHHhhhc
Q 043727 245 EAEVALKEL-NLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 245 ~~~~~~~~~-g~~~~~~~~~~g~Da~~~~~ 273 (275)
.+.+++++. |.++....++|++|+++|.+
T Consensus 404 ~l~~a~~~~~g~~~~~~~~~Ggtd~~~~~~ 433 (477)
T TIGR01893 404 TARKVYSEMFGEDPEVKVIHAGLECGIISS 433 (477)
T ss_pred HHHHHHHHHHCCCCeEEEeecCccHHHHHh
Confidence 999999975 77665667788999988864
No 69
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=97.15 E-value=0.00059 Score=60.87 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIE 53 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~ 53 (275)
.|++++|++++.|++.+ ++++|.|+++++||. |+.||++++..+
T Consensus 146 sGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~-----Gl~GS~~~~~~~ 189 (346)
T PRK10199 146 AGLGVMLELAERLKNVP--TEYGIRFVATSGEEE-----GKLGAENLLKRM 189 (346)
T ss_pred HHHHHHHHHHHHHhhCC--CCCcEEEEEECCccc-----CcHHHHHHHHhc
Confidence 68999999999998764 678999999999998 799999987643
No 70
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0084 Score=54.44 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
+|+++.|.++..+...+ ...++|-|++++|||. ..-|.+.....+. .+ +.. ++++
T Consensus 143 sGlav~la~L~~fa~~~-~~~GNlLf~a~pdEE~-----~s~G~r~a~~~L~---~L---~kk-----------~~l~-- 197 (553)
T COG4187 143 SGLAVHLACLEEFAART-DRQGNLLFMAVPDEEV-----ESRGMREARPALP---GL---KKK-----------FDLE-- 197 (553)
T ss_pred hhhHHHHHHHHHHhhCC-CCCCcEEEEeccchhh-----hcccHHHHHHHHH---HH---HHh-----------hCce--
Confidence 58999999999998874 4679999999999997 4567766543331 12 211 1221
Q ss_pred CCCcchhhccCCCceEEEEeec----ccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhH---HHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQI----EQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPN---SLAAAEVA 155 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hi----e~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~g---i~aaa~~i 155 (275)
.-..+.. .+| .+...--+.++..|..---.-|.|+..|.| .|..| =..+++++
T Consensus 198 ---------------~~~~IN~D~~~~~~----dGd~~ryvYtGtiGKLLp~f~vvG~etHvG-~~f~Gvnan~maSei~ 257 (553)
T COG4187 198 ---------------YTAAINLDVTSDQG----DGDQGRYVYTGTIGKLLPFFFVVGCETHVG-YPFEGVNANFMASEIT 257 (553)
T ss_pred ---------------EEEEeccccccCCC----CCccceEEEeccchhhcceeEEEeeccccC-CcccCCCHHHHHHHHH
Confidence 0111110 111 111122355667777777788999999997 78888 44556666
Q ss_pred HHHH
Q 043727 156 LAVE 159 (275)
Q Consensus 156 ~~l~ 159 (275)
.+|+
T Consensus 258 ~~le 261 (553)
T COG4187 258 RRLE 261 (553)
T ss_pred HHhh
Confidence 6664
No 71
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=95.80 E-value=0.011 Score=54.83 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.|++++|+++|.|+... ++++|.|++|..||. |+.||++++..+.
T Consensus 231 sGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~-----Gl~GS~~~~~~~~ 275 (435)
T COG2234 231 SGVAALLELARVLKGNP--PKRTVRFVAFGAEES-----GLLGSEAYVKRLS 275 (435)
T ss_pred HHHHHHHHHHHHHhcCC--CCceEEEEEecchhh-----cccccHHHHhcCC
Confidence 59999999999999987 889999999999998 7999999977553
No 72
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=95.70 E-value=0.085 Score=49.77 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=64.0
Q ss_pred eEEEEEEEEeeCCCCceeCceEEEEEe---CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCCC--CHHHHH
Q 043727 170 TVGTVGILELHSGAINSIPSKSHLEID---IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPALS--DRSIIL 244 (275)
Q Consensus 170 ~~~tvg~i~~g~~~~NvIP~~a~~~~d---~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~~~--d~~l~~ 244 (275)
++.|+|.++.. -+++++.++ ......+++.++++.+. +..|.++ +....+||+.. |.++++
T Consensus 344 ~S~Nlg~v~~~-------~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~----~~~g~~~---~~~~~~p~w~~~~ds~lv~ 409 (485)
T PRK15026 344 TSLNVGVVTMT-------DNNVEIHCLIRSLIDSGKDYVVSMLDSLG----KLAGAKT---EAKGAYPGWQPDANSPVMH 409 (485)
T ss_pred eeeEEEEEEEe-------CCEEEEEEEecCCCchHHHHHHHHHHHHH----HHcCcEE---EEeCCCCCCCCCCCCHHHH
Confidence 34566666542 356777777 56677787888777763 3346444 55567888765 468999
Q ss_pred HHHHHHHHh-CCCccccCCCCcchHHhhhc
Q 043727 245 EAEVALKEL-NLTYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 245 ~~~~~~~~~-g~~~~~~~~~~g~Da~~~~~ 273 (275)
.+.++++++ |.+.......+|+|.+.|.+
T Consensus 410 ~l~~~y~e~~G~~~~~~~ihaglEcG~~~~ 439 (485)
T PRK15026 410 LVRETYQRLFNKTPNIQIIHAGLECGLFKK 439 (485)
T ss_pred HHHHHHHHHHCCCCeEEEEEEEehHHHHHh
Confidence 999999986 77666677789999999874
No 73
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=94.94 E-value=0.04 Score=49.52 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPK 37 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~ 37 (275)
.|++++++++++|++.+.+++.+|.++++++||.+
T Consensus 186 ~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG 220 (343)
T TIGR03106 186 AGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG 220 (343)
T ss_pred HhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC
Confidence 58999999999999988878899999999999984
No 74
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=93.75 E-value=0.086 Score=47.37 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.||+++|++++.| + +.+++.++.+++++-||. |..|++.....+.
T Consensus 183 ~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEV-----GlrGA~~~a~~i~ 227 (355)
T COG1363 183 AGVAALLELLKEL-K-GIELPADVYFVASVQEEV-----GLRGAKTSAFRIK 227 (355)
T ss_pred HhHHHHHHHHHHh-c-cCCCCceEEEEEecchhh-----ccchhhccccccC
Confidence 5899999999999 4 778899999999999998 7889987765543
No 75
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=93.48 E-value=0.14 Score=43.51 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHc---CCCCCCceEEEEccCCCCCCCCCCcchhhhhhc
Q 043727 2 FKLCLGDIDIINIVIRS---GFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAG 51 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~---~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~ 51 (275)
+.|+++.|+++++|.+. --.++++|.|++|.+|-- +++||+.|+-
T Consensus 26 ~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~-----dYiGS~R~vy 73 (234)
T PF05450_consen 26 VSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF-----DYIGSSRFVY 73 (234)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc-----cccchHHHHH
Confidence 46899999999999765 234679999999999997 7999999864
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=93.03 E-value=0.14 Score=45.05 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhc
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAG 51 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~ 51 (275)
+|+++++++++.|++.+. +.++.+++++-||. |..|++..+.
T Consensus 137 ~g~~~lle~l~~l~~~~~--~~~v~~v~tvqEEv-----G~rGA~~aa~ 178 (292)
T PF05343_consen 137 AGCAVLLELLRELKEKEL--DVDVYFVFTVQEEV-----GLRGAKTAAF 178 (292)
T ss_dssp HHHHHHHHHHHHHTTSS---SSEEEEEEESSCTT-----TSHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCC--CceEEEEEEeeeee-----cCcceeeccc
Confidence 589999999999999764 48999999999998 7889987643
No 77
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=92.22 E-value=0.18 Score=45.39 Aligned_cols=45 Identities=11% Similarity=-0.066 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.|+++++++++.|++.. ++.++.+++++.||. |..|++..+..+.
T Consensus 181 ~g~a~l~e~l~~l~~~~--~~~~l~~~~tvqEEv-----G~rGA~~aa~~i~ 225 (350)
T TIGR03107 181 YGVLMILELLESLKDQE--LPNTLIAGANVQEEV-----GLRGAHVSTTKFN 225 (350)
T ss_pred HHHHHHHHHHHHhhhcC--CCceEEEEEEChhhc-----CchhhhhHHhhCC
Confidence 58999999999998764 578999999999998 7889987654443
No 78
>PRK09961 exoaminopeptidase; Provisional
Probab=92.12 E-value=0.24 Score=44.62 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.|+++++++++.|++.. +..++.+++++.||. |..|++..+..+.
T Consensus 169 ~g~~~lle~l~~l~~~~--~~~~v~~~~tvqEEv-----G~rGa~~aa~~i~ 213 (344)
T PRK09961 169 LGCYLLVTLLRELHDAE--LPAEVWLVASSSEEV-----GLRGGQTATRAVS 213 (344)
T ss_pred HhHHHHHHHHHHhhhcC--CCceEEEEEEccccc-----chHHHHHHHhccC
Confidence 58999999999998664 578999999999998 7889987655443
No 79
>PRK09864 putative peptidase; Provisional
Probab=91.32 E-value=0.25 Score=44.56 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.|+++++++++.|++ ++.++.+++++-||. |..|++..+..+.
T Consensus 178 ~g~~~lle~l~~l~~----~~~~vy~v~TvQEEv-----GlrGA~~aa~~i~ 220 (356)
T PRK09864 178 IGCAMMAELLQTVNN----PEITLYGVGSVEEEV-----GLRGAQTSAEHIK 220 (356)
T ss_pred HHHHHHHHHHHHhhc----CCCeEEEEEEcchhc-----chHHHHHHHhcCC
Confidence 589999999999965 678999999999998 7899987655443
No 80
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=90.66 E-value=0.33 Score=48.00 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIES 54 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~ 54 (275)
.+|+++||++|.+........++|.++++..||. ++.||..|..+.+
T Consensus 166 ~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~-----~L~gsH~FItQH~ 212 (834)
T KOG2194|consen 166 SGVASMLEALRVLSKSDKLLTHSVVFLFNGAEES-----GLLGSHAFITQHP 212 (834)
T ss_pred hHHHHHHHHHHHhhcCCCcccccEEEEecCcccc-----hhhhcccceecCh
Confidence 5899999999999998877899999999999998 6889988876443
No 81
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=90.33 E-value=0.5 Score=42.20 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCc----chhhhhhccCC
Q 043727 2 FKLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISC----LGSLLLAGIES 54 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~----~Gs~~~~~~~~ 54 (275)
++|+++++++++.|+.++. ++.++.|+.||++.|+... -||+.+.....
T Consensus 209 ~lg~~~AV~~~~~lr~~~~----~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k 261 (486)
T COG4882 209 ILGVAQAVETAGRLRGRGL----AAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESK 261 (486)
T ss_pred hhhHHHHHHHHHHHhhcCc----ceeEEEEeccccCCCCCcceeecccchHHHhhcC
Confidence 6899999999999998875 5789999999998887655 58887776543
No 82
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=90.18 E-value=0.38 Score=47.15 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH---HHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhc
Q 043727 4 LCLGDIDIINI---VIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAG 51 (275)
Q Consensus 4 Gv~a~l~a~~~---L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~ 51 (275)
|.+..++..|. |+..|.+|+|+|.|+.|.+||. |++||-.++.
T Consensus 374 Gta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf-----GliGStE~~E 419 (702)
T KOG2195|consen 374 GTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF-----GLLGSTEWAE 419 (702)
T ss_pred cHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc-----cccccHHHHH
Confidence 56666666665 4677899999999999999998 7999987765
No 83
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=68.43 E-value=6.8 Score=35.38 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCCCCcchHHhh
Q 043727 235 PALSDRSIILEAEVALKELNLTYKFMISRAYHDSPFM 271 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~~~~~~g~Da~~~ 271 (275)
....++.+.+.+.++|++.+++++...+++|||++.+
T Consensus 260 ~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~ 296 (350)
T TIGR03107 260 GHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAA 296 (350)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHH
Confidence 3456899999999999999999887667789999943
No 84
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=66.25 E-value=5.6 Score=31.71 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHhCC-CccccCCCCcchHHhhhc
Q 043727 237 LSDRSIILEAEVALKELNL-TYKFMISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~~d~~l~~~~~~~~~~~g~-~~~~~~~~~g~Da~~~~~ 273 (275)
.+++++++.+++++++.+. +.....+++++|++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tD~~~~~~ 146 (189)
T PF01546_consen 109 DNDPPLVQALQAAAQEVGGEPPEPVASGGGTDAGFLAE 146 (189)
T ss_dssp CTCHHHHHHHHHHHHHTTSSEEEEEEESSSSTHHHHHC
T ss_pred cccHHHHHHHHHHHHHHhhccccccceeccccchhhhh
Confidence 3678899999999999865 556677889999999974
No 85
>PRK09961 exoaminopeptidase; Provisional
Probab=63.60 E-value=9.5 Score=34.33 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccc-cCCCCcchHHhhh
Q 043727 235 PALSDRSIILEAEVALKELNLTYKF-MISRAYHDSPFMA 272 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~-~~~~~g~Da~~~~ 272 (275)
....|+.+++.++++|++.+++++. ...++|||++.+.
T Consensus 251 ~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~ggGTDa~~~~ 289 (344)
T PRK09961 251 SLIAPPKLTAWIETVAAEIGIPLQADMFSNGGTDGGAVH 289 (344)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCcEEEecCCCcchHHHHH
Confidence 3456899999999999999988776 4455789999764
No 86
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=59.97 E-value=8.3 Score=33.87 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCccc-cCCCCcchHHhhhcc
Q 043727 237 LSDRSIILEAEVALKELNLTYKF-MISRAYHDSPFMARY 274 (275)
Q Consensus 237 ~~d~~l~~~~~~~~~~~g~~~~~-~~~~~g~Da~~~~~~ 274 (275)
..++.+.+.++++|++.+++++. ....++||++.+...
T Consensus 220 i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~~~~~ 258 (292)
T PF05343_consen 220 IPNPKLVDKLREIAEENGIPYQREVFSGGGTDAGAIQLS 258 (292)
T ss_dssp ESHHHHHHHHHHHHHHTT--EEEEEESSSSSTHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCcccHHHHHHHc
Confidence 45789999999999999999876 667889999988643
No 87
>PRK09864 putative peptidase; Provisional
Probab=56.81 E-value=14 Score=33.49 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCccc-cCCCCcchHHhhhc
Q 043727 235 PALSDRSIILEAEVALKELNLTYKF-MISRAYHDSPFMAR 273 (275)
Q Consensus 235 ~~~~d~~l~~~~~~~~~~~g~~~~~-~~~~~g~Da~~~~~ 273 (275)
....++.+.+.+.++|++.+++++. ..+++|||+..+..
T Consensus 259 ~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~ 298 (356)
T PRK09864 259 RYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNV 298 (356)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHH
Confidence 3456899999999999999999876 44557999998753
No 88
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=53.98 E-value=18 Score=32.56 Aligned_cols=37 Identities=5% Similarity=-0.064 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCccc-cCCCCcchHHhhhc
Q 043727 237 LSDRSIILEAEVALKELNLTYKF-MISRAYHDSPFMAR 273 (275)
Q Consensus 237 ~~d~~l~~~~~~~~~~~g~~~~~-~~~~~g~Da~~~~~ 273 (275)
+.++.+.+.+.++|++.+++++. ..+++|||++.+..
T Consensus 263 ~~~~~l~~~l~~~A~~~~Ip~Q~~~~~~~gtDa~~~~~ 300 (343)
T TIGR03106 263 PFDYHLTRKLIRLCQDHGIPHRRDVFRYYRSDAASAVE 300 (343)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEecCCCCChHHHHHH
Confidence 44899999999999999999876 44557999998753
No 89
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=50.58 E-value=20 Score=32.40 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCCccccC-CCCcchHHhhhc
Q 043727 238 SDRSIILEAEVALKELNLTYKFMI-SRAYHDSPFMAR 273 (275)
Q Consensus 238 ~d~~l~~~~~~~~~~~g~~~~~~~-~~~g~Da~~~~~ 273 (275)
.++.+.+.+.++|++.+++++... .++|||++.+..
T Consensus 267 ~~~~l~~~L~~~A~~~~Ip~Q~~v~~~ggTDA~a~~~ 303 (355)
T COG1363 267 YHPKLRKFLLELAEKNNIPYQVDVSPGGGTDAGAAHL 303 (355)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCccHHHHHH
Confidence 489999999999999999987644 448999997643
No 90
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=48.09 E-value=1e+02 Score=22.37 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=26.7
Q ss_pred CCceeCceEEEEEe--------CCHhHHHHHHHHHHHHHHHH
Q 043727 183 AINSIPSKSHLEID--------IDEKRRKTVIEKIHQSAITI 216 (275)
Q Consensus 183 ~~NvIP~~a~~~~d--------~~~e~~~~~~~~i~~~~~~~ 216 (275)
..+.||+.-.+++| .+++.++++.++++++++..
T Consensus 17 ~~~lv~~~~~LTLdlDPdNEF~W~~~~l~kVy~~F~eLVe~~ 58 (108)
T PF10664_consen 17 NNELVPSDDKLTLDLDPDNEFNWNEEALQKVYRKFDELVESY 58 (108)
T ss_pred cCceecCCCeeEEecCCCcccccCHHHHHHHHHHHHHHHHhh
Confidence 55789999888887 56678888888888887654
No 91
>PRK02256 putative aminopeptidase 1; Provisional
Probab=43.52 E-value=29 Score=32.59 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEP 36 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 36 (275)
.|+.+++++++.++ .+...+.++++..||.
T Consensus 263 ~~~~~~leal~~~~----~~~~~~~~~~~dqEEV 292 (462)
T PRK02256 263 VCAYTSLEALLELE----NPEKTAVVLLVDKEEI 292 (462)
T ss_pred HHHHHHHHHHHhcc----cCCCeEEEEEEccccc
Confidence 47788888887664 3556889999999997
No 92
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=40.31 E-value=1e+02 Score=29.16 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=39.9
Q ss_pred ceEEEEEeCCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC
Q 043727 189 SKSHLEIDIDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA 236 (275)
Q Consensus 189 ~~a~~~~d~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~ 236 (275)
+.|.+.++.+++-.+.+++.+.+........+|+++ ++.+...-|.+
T Consensus 199 g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f-~IsfS~Qk~sT 245 (513)
T PF14134_consen 199 GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKF-EISFSEQKPST 245 (513)
T ss_pred CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceE-EEEecccCCCC
Confidence 567788888889999999999999999999999999 99887666554
No 93
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.65 E-value=2.5e+02 Score=22.89 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=4.3
Q ss_pred eEEEEEEEE
Q 043727 170 TVGTVGILE 178 (275)
Q Consensus 170 ~~~tvg~i~ 178 (275)
.++++|.+.
T Consensus 88 vv~~~g~~~ 96 (203)
T cd00959 88 MVINIGALK 96 (203)
T ss_pred EeecHHHHh
Confidence 345555443
No 94
>PRK06156 hypothetical protein; Provisional
Probab=30.15 E-value=1.1e+02 Score=29.15 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCCCCCCcchhhhhhccCCchhhhhcccCCCCCcHHHHHHHcCCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKRYGISCLGSLLLAGIESLAKDLISTVDGQNISFLHAARSAGHAKK 82 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~g~~~~ 82 (275)
.|+++++.|++.|++.+++++++|.|++++|||. |+.|++.+..... ... +.+.
T Consensus 157 gg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~G~~~~~~~~~--------~~~-----------~~~~-- 210 (520)
T PRK06156 157 GAIVTALYAMKAIKDSGLPLARRIELLVYTTEET-----DGDPLKYYLERYT--------PPD-----------YNIT-- 210 (520)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEeccccc-----CchhHHHHHHhcC--------CCC-----------eEEe--
Confidence 4788999999999999998889999999999998 5678887753210 000 0010
Q ss_pred CCCcchhhccCCCceEEEEeecccccccccCCCceEEEEeeecceEEEEEEEecCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043727 83 HNDLSSVFLKKGSYSAFVELQIEQGLILEEEGTSIVIVTAIAASASIKVDFEGNEGHAGAVLMPNSLAAAEVALAVEKHV 162 (275)
Q Consensus 83 ~~~~~~~~~~~~~v~~~~~~Hie~g~~le~~~~~~gvv~~~~G~~~~~i~i~G~~~Hag~~p~~gi~aaa~~i~~l~~~~ 162 (275)
++. ...++.+.+|...+.|++.|+..
T Consensus 211 ---------------------------~D~---~~~~~~~E~~~~~~~i~~~~~~~------------------------ 236 (520)
T PRK06156 211 ---------------------------LDA---EYPVVTAEKGWGTIMATFPKRAA------------------------ 236 (520)
T ss_pred ---------------------------eCC---CCceEEEecceEEEEEEecCcCC------------------------
Confidence 000 01235667888899999987321
Q ss_pred HhhCCCCeEEEEEEEEeeCCCCceeCceEEEEEe-CCHh-HHHHHHHHHHH
Q 043727 163 LESGSIDTVGTVGILELHSGAINSIPSKSHLEID-IDEK-RRKTVIEKIHQ 211 (275)
Q Consensus 163 ~~~~~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d-~~~e-~~~~~~~~i~~ 211 (275)
......+..+++ |+..|+||++|.+.+. .+.+ ..+.+.++...
T Consensus 237 -----~~~~~~l~~~~g-G~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~ 281 (520)
T PRK06156 237 -----DGKGAEIVAMTG-GAFANQIPQTAVATLSGGDPAALAAALQAAAAA 281 (520)
T ss_pred -----CCCceeEEEEEc-CCcCCCCCCccEEEEecCCHHHHHHHHHHHHHH
Confidence 123567788887 4799999999999988 4433 34444444444
No 95
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=29.23 E-value=2.8e+02 Score=21.63 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred CceeCceEEEEEe--CC-HhHHHHHHHHHHHHHHHHHHhcCCC-EEEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 043727 184 INSIPSKSHLEID--ID-EKRRKTVIEKIHQSAITIAKNRGVT-LSEFKIVNQDPPALSDRSIILEAEVALKELNLTYK 258 (275)
Q Consensus 184 ~NvIP~~a~~~~d--~~-~e~~~~~~~~i~~~~~~~~~~~g~~-~~~i~~~~~~p~~~~d~~l~~~~~~~~~~~g~~~~ 258 (275)
+++-.+++.+++. ++ ....+.+.+.+++.+++ .|++ + +++. .+.|.....-+.+..++..+++|+.++
T Consensus 20 V~v~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~----~Gv~~V-~V~i--~~~p~Wt~d~it~~gr~~l~~~giapp 91 (146)
T TIGR02159 20 VDVDGGGVVVKFTPTYSGCPALEVIRQDIRDAVRA----LGVEVV-EVST--SLDPPWTTDWITEDAREKLREYGIAPP 91 (146)
T ss_pred EEEECCEEEEEEEeCCCCCchHHHHHHHHHHHHHh----cCCCeE-EEeE--eeCCCCChHHCCHHHHHHHHhcCccCC
Confidence 4555677777777 33 35677777777777654 2543 3 3332 233333344566667777777887543
No 96
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=28.49 E-value=2.9e+02 Score=22.99 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=6.4
Q ss_pred CeEEEEEEEEe
Q 043727 169 DTVGTVGILEL 179 (275)
Q Consensus 169 ~~~~tvg~i~~ 179 (275)
+.++++|.+..
T Consensus 88 Dvv~n~g~l~~ 98 (211)
T TIGR00126 88 DMVINIGALKD 98 (211)
T ss_pred EeecchHhhhC
Confidence 34666666654
No 97
>PRK02813 putative aminopeptidase 2; Provisional
Probab=28.41 E-value=51 Score=30.69 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEEccCCCC
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIMFTSEEP 36 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 36 (275)
.|+.+++++++.++. ...+.++++..||.
T Consensus 237 ~~~~~~l~al~~~~~-----~~~~~~~~~d~EEV 265 (428)
T PRK02813 237 SSCHAGLEALLAAAS-----DATNVLAAFDHEEV 265 (428)
T ss_pred HHHHHHHHHHHhcCC-----CCeEEEEEEecCcc
Confidence 467777777776642 56889999999997
No 98
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=66 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHcC-C-CCCCceEEEEccCCCCCCCCCCcchhhhhh
Q 043727 2 FKLCLGDIDIINIVIRSG-F-KPRRSLEFIMFTSEEPKRYGISCLGSLLLA 50 (275)
Q Consensus 2 ~~Gv~a~l~a~~~L~~~~-~-~~~~~i~~~~~~dEE~~~fg~~~~Gs~~~~ 50 (275)
+.++++-|.|+++|++.. + .+.+++.++++.+|-. +.+||+.++
T Consensus 203 ~~slv~~laaa~al~r~pai~nl~rnV~f~~f~get~-----~ylgS~r~~ 248 (596)
T KOG2657|consen 203 LTSLVSVLAAARALKRQPAINNLNRNVFFAFFNGETL-----DYLGSGRAA 248 (596)
T ss_pred chhHHHHHHHHHHhccCcccccccceeEEEEeeccee-----eeccchhhh
Confidence 467888999999998875 3 3579999999999987 689998653
No 99
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=26.99 E-value=97 Score=29.23 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCceEEEE-ccCCCCCCCCCCcchhhhhhc
Q 043727 3 KLCLGDIDIINIVIRSGFKPRRSLEFIM-FTSEEPKRYGISCLGSLLLAG 51 (275)
Q Consensus 3 ~Gv~a~l~a~~~L~~~~~~~~~~i~~~~-~~dEE~~~fg~~~~Gs~~~~~ 51 (275)
.|+.++|++++.++...-.....+.+++ +..||. |+.|++....
T Consensus 254 ~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEV-----Gs~ga~GA~s 298 (465)
T PTZ00371 254 GSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEV-----GSSSSQGAGS 298 (465)
T ss_pred HHHHHHHHHHHhccccccCCCCceEEEEEECCcCC-----CCCcchhccc
Confidence 4677788888776532001233455555 899997 4555554433
No 100
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=25.51 E-value=98 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEccCCCCCC
Q 043727 5 CLGDIDIINIVIRSGFKPRRSLEFIMFTSEEPKR 38 (275)
Q Consensus 5 v~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~~ 38 (275)
-..++.++++|++.|++.+.+|.|+++-|-+..+
T Consensus 171 d~~A~g~~~~l~~~g~~iP~disvigfd~~~~~~ 204 (247)
T cd06276 171 DTDLVFLIKKARESGLLLGKDIGIISYNDTPLKE 204 (247)
T ss_pred HHHHHHHHHHHHHcCCcCCceeEEEEecCchhhh
Confidence 4567889999999999989999999999988643
No 101
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=25.13 E-value=1.3e+02 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 043727 199 EKRRKTVIEKIHQSAITIAKNRGVTLSEFK 228 (275)
Q Consensus 199 ~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~ 228 (275)
.-..++..+++++.+.++..++++++ +++
T Consensus 8 ~Lg~~eAr~~~~~~~~~l~~~~~~~~-~W~ 36 (87)
T PF09650_consen 8 SLGREEARRRAEELAEKLAEEYGVEC-TWE 36 (87)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCEE-EEE
Confidence 34577888899999999888999888 664
No 102
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=24.75 E-value=1.1e+02 Score=21.50 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=28.4
Q ss_pred ceeCceEEEEEe-CCHhHHHHHHHHHHHHHHHHHHhcCCCE
Q 043727 185 NSIPSKSHLEID-IDEKRRKTVIEKIHQSAITIAKNRGVTL 224 (275)
Q Consensus 185 NvIP~~a~~~~d-~~~e~~~~~~~~i~~~~~~~~~~~g~~~ 224 (275)
..-|+...+.++ .+.+.++.++.-|.+.+.+.+...+.++
T Consensus 46 ~a~~~~L~l~vea~~~~~L~~~~~vv~~HL~rFa~re~l~v 86 (89)
T PF09981_consen 46 SAEPDALTLRVEAPDAEALARLEDVVARHLERFAFREELEV 86 (89)
T ss_dssp EEETTEEEEEEEESSHHHHHHHHHHHHHHHHHTSTTSS---
T ss_pred EeCCCeEEEEEEeCCHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 345666777777 8999999999999988887765544444
No 103
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.80 E-value=3e+02 Score=24.76 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=42.3
Q ss_pred CCCeEEEEEEEEeeCCCCceeCceEEEEEeCCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEecCCCCC---CCCHHHH
Q 043727 167 SIDTVGTVGILELHSGAINSIPSKSHLEIDIDEKRRKTVIEKIHQSAITIAKNRGVTLSEFKIVNQDPPA---LSDRSII 243 (275)
Q Consensus 167 ~~~~~~tvg~i~~g~~~~NvIP~~a~~~~d~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~~~~~~p~~---~~d~~l~ 243 (275)
++++++.++.+..|++..-+|++-|.+ +..+.+.+..+++ +++.....--. -++ ....|. ....+-.
T Consensus 77 ~~~t~v~~~~~~ig~~~~~~IAGPCsi------Es~e~~~~~A~~l-k~~ga~~~r~~-~fK--pRTsp~sf~G~g~~gL 146 (335)
T PRK08673 77 PEPTVVKVGDVEIGGGKPVVIAGPCSV------ESEEQILEIARAV-KEAGAQILRGG-AFK--PRTSPYSFQGLGEEGL 146 (335)
T ss_pred CCCCEEEECCEEECCCceEEEEecCcc------CCHHHHHHHHHHH-HHhchhhccCc-Eec--CCCCCcccccccHHHH
Confidence 356788888777765567778887765 2333333322222 11111110001 111 111111 1235566
Q ss_pred HHHHHHHHHhCCCcccc
Q 043727 244 LEAEVALKELNLTYKFM 260 (275)
Q Consensus 244 ~~~~~~~~~~g~~~~~~ 260 (275)
+.+++++++.|+++...
T Consensus 147 ~~L~~~~~~~Gl~v~te 163 (335)
T PRK08673 147 KLLAEAREETGLPIVTE 163 (335)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 78888899999876443
No 104
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.80 E-value=1.2e+02 Score=25.74 Aligned_cols=31 Identities=6% Similarity=-0.060 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEccCCCC
Q 043727 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEP 36 (275)
Q Consensus 6 ~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 36 (275)
..++.++++|++.|++.+.+|.|+++-|.+.
T Consensus 188 ~~A~gvl~al~~~gl~vP~dvsvig~~d~~~ 218 (269)
T cd06287 188 AFAVGAVRAATELGRAVPDQLRVVTRYDGLR 218 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeccCchh
Confidence 4577899999999999899999998555543
No 105
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=21.80 E-value=1.3e+02 Score=22.71 Aligned_cols=30 Identities=7% Similarity=0.232 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEccCCC
Q 043727 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEE 35 (275)
Q Consensus 6 ~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE 35 (275)
..++.++++|.+.|+..+.++.|+++-+=+
T Consensus 78 ~~a~~~~~~l~~~g~~vP~di~vv~~~~~~ 107 (160)
T PF13377_consen 78 RLALGVLRALRELGIRVPQDISVVSFDDSP 107 (160)
T ss_dssp HHHHHHHHHHHHTTSCTTTTSEEEEESSSG
T ss_pred HHHHHHHHHHHHcCCcccccccEEEecCcH
Confidence 456778899999999889999999998733
No 106
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=21.29 E-value=1.8e+02 Score=20.69 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=24.9
Q ss_pred EEEe-CCHhHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Q 043727 193 LEID-IDEKRRKTVIEKIHQSAITIAKNRGVTLSEFK 228 (275)
Q Consensus 193 ~~~d-~~~e~~~~~~~~i~~~~~~~~~~~g~~~~~i~ 228 (275)
+.++ +..-..++.+++++++++.....|+.++ +|+
T Consensus 4 I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~e~-~W~ 39 (91)
T TIGR02610 4 ISVERDHSLGPAAARAKAEDLARKLTDRYGLAS-HWE 39 (91)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHhCCEe-EEe
Confidence 4455 4445677788888888888888888777 553
No 107
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=20.60 E-value=1.4e+02 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEccCCCCC
Q 043727 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEPK 37 (275)
Q Consensus 6 ~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~~ 37 (275)
..++.++++|++.|++.+.+|.|+++-|-+.+
T Consensus 246 ~~A~g~~~al~~~g~~vP~dvsvvgfd~~~~~ 277 (329)
T TIGR01481 246 EMAAGILNAAMDAGIKVPEDLEVITSNNTRLT 277 (329)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEeeCCchHH
Confidence 45678999999999988899999999887643
No 108
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=20.05 E-value=1.3e+02 Score=26.33 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEccCCCC
Q 043727 6 LGDIDIINIVIRSGFKPRRSLEFIMFTSEEP 36 (275)
Q Consensus 6 ~a~l~a~~~L~~~~~~~~~~i~~~~~~dEE~ 36 (275)
..++.++++|++.|++.+.+|.|+++-|-+.
T Consensus 247 ~~A~g~~~al~~~G~~vP~disVigfD~~~~ 277 (343)
T PRK10727 247 SMAAGAMGVLNDNGIDVPGEISLIGFDDVLV 277 (343)
T ss_pred HHHHHHHHHHHHcCCCCCcceeEEeecCcHH
Confidence 4578899999999998889999999977654
Done!