BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043728
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BK8|A Chain A, Determination Of The Three-Dimensional Solution
          Structure Of Aesculus Hippocastanum Antimicrobial
          Protein 1 (Ah- Amp1) By 1h Nmr, 25 Structures
          Length = 50

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 35 SKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          S+TWSG C NT +C +QC+  E A  GACH++   + CFCYF C
Sbjct: 7  SQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFNC 50


>pdb|1AYJ|A Chain A, Determination Of The Three-Dimensional Solution
          Structure Of Raphanus Sativus Antifungal Protein 1
          (Rs-Afp1) By 1h Nmr, 20 Structures
          Length = 51

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K+C+  S TWSG+C N   C  QC   E AR G+C+       C CYF C
Sbjct: 2  KLCERPSGTWSGVCGNNNACKNQCINLEKARHGSCNYVFPAHKCICYFPC 51


>pdb|2KPY|A Chain A, Solution Structure Of The Major Allergen Of Artemisia
          Vulgaris (Art V 1)
          Length = 108

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 26 AEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIG-FACFCYFKC 78
          A +K+C+  SKT+SG C N     +   + E A+ GACH++  G  +CFCYF C
Sbjct: 1  AGSKLCEKTSKTYSGKCDNKKCDKKCI-EWEKAQHGACHKREAGKESCFCYFDC 53


>pdb|2GL1|A Chain A, Nmr Solution Structure Of Vigna Radiata Defensin 2
          (Vrd2)
          Length = 47

 Score = 33.1 bits (74), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K C+  + T+ G C  TG+C   CK +E  R G C      F C+C   C
Sbjct: 1  KTCENLANTYRGPCFTTGSCDDHCKNKEHLRSGRCRDD---FRCWCTRNC 47


>pdb|2LJ7|A Chain A, 3d Solution Structure Of Plant Defensin Lc-Def
          Length = 47

 Score = 32.3 bits (72), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K C+  S ++ G C+  GNC++ CK++E    G C      F C+C   C
Sbjct: 1  KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDD---FRCWCTRNC 47


>pdb|1JKZ|A Chain A, Nmr Solution Structure Of Pisum Sativum Defensin 1
          (Psd1)
          Length = 46

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K C+  + T+ G+C    +C   CK +     G CH     + CFC   C
Sbjct: 1  KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCH----NWKCFCTQNC 46


>pdb|3PSM|A Chain A, .98a Crystal Structure Of A Dimeric Plant Defensin Spe10
 pdb|3PSM|B Chain B, .98a Crystal Structure Of A Dimeric Plant Defensin Spe10
          Length = 47

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78
          K C+  + T+ G C   G+C   CK +E    G C      F C+C   C
Sbjct: 1  KTCENLADTFRGPCFTDGSCDDHCKNKEHLIKGRCRDD---FRCWCTRNC 47


>pdb|2KSK|A Chain A, Solution Structure Of Sugarcane Defensin 5
          Length = 71

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 26 AEAKVCQLRSKTWSGLCLNTGNCSRQC-KQQEDARFGACHRQGIGFACFCYFKC 78
              +C+ RS  + G C+   +C+  C K+ E    G C+ +     CFC   C
Sbjct: 4  TPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57


>pdb|1GPS|A Chain A, Solution Structure Of Gamma 1-H And Gamma 1-P Thionins
          From Barley And Wheat Endosperm Determined By 1h-Nmr: A
          Structural Motif Common To Toxic Arthropod Proteins
          Length = 47

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQ 55
          K+C+ RS  + G C++  NC++ C+Q+
Sbjct: 1  KICRRRSAGFKGPCMSNKNCAQVCQQE 27


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.136    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,691,456
Number of Sequences: 62578
Number of extensions: 47464
Number of successful extensions: 167
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 15
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)