Query 043728
Match_columns 78
No_of_seqs 100 out of 340
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00304 Gamma-thionin: Gamma- 99.7 2.5E-18 5.5E-23 93.6 0.2 47 29-78 1-47 (47)
2 smart00505 Knot1 Knottins. Kno 99.0 2.3E-10 5.1E-15 60.9 2.4 44 30-76 1-45 (45)
3 cd00107 Knot1 The "knottin" fo 98.7 1.2E-08 2.5E-13 51.5 2.2 33 40-75 1-33 (33)
4 PF10868 DUF2667: Protein of u 98.3 6.6E-07 1.4E-11 54.6 2.8 62 11-77 13-80 (90)
5 PF01097 Defensin_2: Arthropod 97.1 0.0002 4.4E-09 36.4 1.1 28 44-75 7-34 (34)
6 PF00537 Toxin_3: Scorpion tox 96.7 0.00089 1.9E-08 37.2 1.2 35 41-76 14-49 (54)
7 PF07127 Nodulin_late: Late no 96.3 0.0054 1.2E-07 33.7 3.1 49 1-64 1-49 (54)
8 PF07333 SLR1-BP: S locus-rela 95.8 0.0063 1.4E-07 33.8 1.7 48 30-78 10-58 (58)
9 PF00451 Toxin_2: Scorpion sho 95.5 0.0069 1.5E-07 30.4 0.9 31 41-75 2-32 (32)
10 PF07172 GRP: Glycine rich pro 92.8 0.13 2.9E-06 31.5 2.8 11 12-22 12-22 (95)
11 PF06876 SCRL: Plant self-inco 89.3 0.11 2.4E-06 29.4 -0.0 51 25-76 9-67 (67)
12 PF14866 Toxin_38: Potassium c 89.0 0.21 4.5E-06 28.0 1.0 28 44-77 28-55 (56)
13 PF08086 Toxin_17: Ergtoxin fa 85.7 0.53 1.1E-05 24.4 1.3 25 45-74 17-41 (41)
14 PF08119 Toxin_31: Scorpion ac 84.1 0.21 4.6E-06 25.1 -0.7 27 45-75 10-36 (37)
15 PF09680 Tiny_TM_bacill: Prote 77.9 2.1 4.6E-05 20.0 1.6 14 8-21 6-19 (24)
16 PF14865 Macin: Macin; PDB: 2K 77.9 1.2 2.6E-05 25.2 1.0 34 30-66 8-41 (59)
17 PF08027 Albumin_I: Albumin I; 77.4 0.91 2E-05 29.1 0.4 37 25-65 16-53 (120)
18 PF10690 Myticin-prepro: Mytic 75.9 1.3 2.7E-05 27.3 0.7 28 46-74 28-55 (98)
19 TIGR01732 tiny_TM_bacill conse 70.5 5 0.00011 19.1 1.9 14 8-21 8-21 (26)
20 PRK08944 motB flagellar motor 67.7 4.1 8.9E-05 29.5 1.9 23 1-23 18-40 (302)
21 KOG4742 Predicted chitinase [G 63.5 7.8 0.00017 28.3 2.7 29 1-31 1-31 (286)
22 smart00004 NL Domain found in 61.8 5.1 0.00011 20.6 1.1 20 44-63 18-38 (38)
23 PLN00214 putative protein; Pro 61.2 8.5 0.00018 24.5 2.2 28 1-28 1-32 (115)
24 PF13677 MotB_plug: Membrane M 57.1 12 0.00026 20.6 2.2 16 7-22 24-39 (58)
25 PRK08457 motB flagellar motor 54.4 12 0.00026 26.4 2.3 22 2-23 18-39 (257)
26 PF01405 PsbT: Photosystem II 53.8 17 0.00038 17.7 2.2 21 1-21 1-21 (29)
27 PF07265 TAP35_44: Tapetum spe 53.2 19 0.0004 22.8 2.8 21 1-21 1-21 (119)
28 PF06607 Prokineticin: Prokine 51.6 5.7 0.00012 24.5 0.3 14 51-65 49-62 (97)
29 CHL00031 psbT photosystem II p 49.6 28 0.00062 17.4 2.6 21 1-21 1-21 (33)
30 COG4808 Uncharacterized protei 49.3 19 0.00041 23.8 2.5 19 1-19 1-19 (152)
31 PRK11875 psbT photosystem II r 48.2 32 0.00069 17.0 2.6 21 1-21 1-21 (31)
32 PRK06742 flagellar motor prote 48.1 18 0.0004 24.9 2.4 22 2-23 14-35 (225)
33 PF12071 DUF3551: Protein of u 47.9 37 0.0008 20.1 3.4 39 25-65 24-66 (82)
34 PRK06667 motB flagellar motor 43.1 25 0.00054 24.5 2.5 20 4-23 22-41 (252)
35 TIGR02052 MerP mercuric transp 39.0 25 0.00054 19.0 1.7 16 1-16 1-16 (92)
36 PF12606 RELT: Tumour necrosis 37.5 36 0.00077 18.5 2.0 8 25-32 25-32 (50)
37 PRK06925 flagellar motor prote 36.8 41 0.00089 23.1 2.8 20 4-23 19-38 (230)
38 PF00066 Notch: LNR domain; I 35.7 6 0.00013 20.2 -1.2 20 44-63 17-37 (38)
39 PF15106 TMEM156: TMEM156 prot 34.4 37 0.0008 24.0 2.2 19 5-23 179-197 (226)
40 KOG1348 Asparaginyl peptidases 33.6 39 0.00086 26.0 2.4 19 1-19 1-19 (477)
41 KOG4606 Uncharacterized conser 33.3 48 0.001 21.1 2.4 20 25-44 94-113 (126)
42 PF11119 DUF2633: Protein of u 32.4 46 0.00099 18.8 2.0 22 1-22 9-31 (59)
43 COG5510 Predicted small secret 32.3 66 0.0014 17.1 2.5 8 3-10 4-11 (44)
44 PRK09038 flagellar motor prote 32.2 49 0.0011 23.6 2.6 18 5-22 22-39 (281)
45 COG4856 Uncharacterized protei 32.0 35 0.00077 26.0 1.9 18 4-22 10-27 (403)
46 PRK10893 lipopolysaccharide ex 31.5 52 0.0011 22.2 2.6 14 1-14 1-14 (192)
47 PF11587 Prion_bPrPp: Major pr 30.8 29 0.00063 16.9 0.9 6 16-21 12-17 (29)
48 PRK06778 hypothetical protein; 30.2 56 0.0012 23.5 2.6 19 4-22 26-44 (289)
49 PRK07734 motB flagellar motor 29.4 60 0.0013 22.7 2.6 18 5-22 24-41 (259)
50 PF15144 DUF4576: Domain of un 29.3 72 0.0016 19.2 2.6 21 1-21 1-21 (88)
51 PRK10299 PhoPQ regulatory prot 29.2 79 0.0017 17.0 2.5 10 1-10 1-10 (47)
52 COG3630 OadG Na+-transporting 28.7 43 0.00093 20.2 1.5 13 12-24 24-36 (84)
53 PF06084 Cytomega_TRL10: Cytom 28.5 49 0.0011 21.4 1.9 16 6-21 64-80 (150)
54 PRK02710 plastocyanin; Provisi 28.3 72 0.0016 19.6 2.6 9 1-9 1-9 (119)
55 PF01815 Rop: Rop protein; In 28.3 28 0.00061 19.6 0.7 30 1-33 11-40 (60)
56 PF15012 DUF4519: Domain of un 26.5 43 0.00092 18.7 1.2 14 8-21 38-51 (56)
57 PLN00212 glutelin; Provisional 26.3 63 0.0014 25.3 2.5 18 1-18 1-18 (493)
58 COG1314 SecG Preprotein transl 26.2 55 0.0012 19.6 1.7 20 2-21 52-71 (86)
59 PF03058 Sar8_2: Sar8.2 family 25.6 1.1E+02 0.0023 18.8 2.9 8 1-8 1-8 (93)
60 PLN03207 stomagen; Provisional 25.6 70 0.0015 20.1 2.1 9 46-54 82-90 (113)
61 PF08636 Pkr1: ER protein Pkr1 25.5 88 0.0019 18.4 2.5 18 5-22 27-44 (75)
62 PF15330 SIT: SHP2-interacting 25.1 69 0.0015 19.9 2.1 8 14-21 10-17 (107)
63 PF05294 Toxin_5: Scorpion sho 24.2 1E+02 0.0022 15.2 2.2 20 46-74 13-32 (32)
64 PRK09041 motB flagellar motor 23.9 86 0.0019 23.0 2.7 18 5-22 31-48 (317)
65 PF10960 DUF2762: Protein of u 22.9 80 0.0017 18.2 1.9 15 6-20 13-27 (71)
66 TIGR01614 PME_inhib pectineste 22.9 52 0.0011 21.0 1.3 10 1-10 1-10 (178)
67 cd00150 PlantTI Plant trypsin 22.5 35 0.00076 16.3 0.3 15 41-55 7-21 (27)
68 PF11415 Toxin_37: Antifungal 22.4 34 0.00074 17.3 0.3 28 46-77 4-33 (35)
69 PF13998 MgrB: MgrB protein 21.9 57 0.0012 15.8 1.0 17 49-65 7-23 (29)
70 PF10731 Anophelin: Thrombin i 21.5 1.3E+02 0.0028 17.2 2.5 17 1-19 1-17 (65)
71 PF06103 DUF948: Bacterial pro 20.8 1.3E+02 0.0027 17.4 2.6 14 7-20 5-18 (90)
72 smart00286 PTI Plant trypsin i 20.7 39 0.00085 16.4 0.3 16 40-55 8-23 (29)
73 PF07771 TSGP1: Tick salivary 20.6 31 0.00066 21.9 -0.2 8 47-54 38-45 (120)
No 1
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems []. A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....
Probab=99.69 E-value=2.5e-18 Score=93.62 Aligned_cols=47 Identities=36% Similarity=0.771 Sum_probs=41.3
Q ss_pred hhhhhcCCcceeecCCccccHHHhcccCCCCCceeecCCCCcceEeecCC
Q 043728 29 KVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCYFKC 78 (78)
Q Consensus 29 ~~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~~~C 78 (78)
|+|+++|++|+|+|+++++|+++|++ ||+.+|+|++ +.++|+|++||
T Consensus 1 k~C~~~S~tf~G~C~~~~~C~~~C~~-eg~~~G~C~~--~~~~C~C~~~C 47 (47)
T PF00304_consen 1 KTCERPSGTFKGLCFSDSNCANVCIN-EGFTGGKCSG--PLRRCFCTKPC 47 (47)
T ss_dssp EEEEEESSSS-SS-SSHHHHHHHHHH-CTSSEEEEET--TTTEEEEEEEE
T ss_pred CcccccCCCceeECCCcchhhHHhcc-CCCCCCEeCC--CCceEEEeCcC
Confidence 57999999999999999999999998 9999999996 34899999997
No 2
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=99.00 E-value=2.3e-10 Score=60.91 Aligned_cols=44 Identities=36% Similarity=0.770 Sum_probs=37.7
Q ss_pred hhhhcCCcceeecCCcc-ccHHHhcccCCCCCceeecCCCCcceEeec
Q 043728 30 VCQLRSKTWSGLCLNTG-NCSRQCKQQEDARFGACHRQGIGFACFCYF 76 (78)
Q Consensus 30 ~C~~~s~~~~G~C~~~~-~C~~~C~~~eg~~~G~C~~~~~~~~C~C~~ 76 (78)
+|+.+|.+|+|.|..+. +|++.|++ ||+.+|+|+.. .++|+|++
T Consensus 1 ~C~~~~~~~~g~C~~~~~~C~~~C~~-~g~~~G~C~~~--~~~C~C~~ 45 (45)
T smart00505 1 TCDGYSVTFSGNCKSSCALCAKLCKK-KGAKGGYCRGT--TRRCFCYK 45 (45)
T ss_pred CCcccccCCCCCccCCchHhHHHhhh-cCCCCCCcCCc--CCceEeeC
Confidence 47778888999999888 99999997 89999999864 36899974
No 3
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=98.69 E-value=1.2e-08 Score=51.51 Aligned_cols=33 Identities=42% Similarity=1.114 Sum_probs=28.4
Q ss_pred eecCCccccHHHhcccCCCCCceeecCCCCcceEee
Q 043728 40 GLCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCY 75 (78)
Q Consensus 40 G~C~~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~ 75 (78)
|.|.+++.|+++|++ +|+.+|+|.+. .++|+|+
T Consensus 1 g~C~~~~~C~~~Ck~-~g~~~G~C~~~--~~~C~C~ 33 (33)
T cd00107 1 GTCFSDSYCDKECKK-KGASGGYCYGQ--GLACWCY 33 (33)
T ss_pred CcCCCchhHHHHHhH-cCCCccEeCCC--CCeEEeC
Confidence 578888999999997 89999999864 3689995
No 4
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=98.28 E-value=6.6e-07 Score=54.62 Aligned_cols=62 Identities=18% Similarity=0.482 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccchhhhh-hhhhcCCcceeecCC-ccccHHHhcccC-CCCCceeecCCC---CcceEeecC
Q 043728 11 LFAFFILFAAFDVPMAEAK-VCQLRSKTWSGLCLN-TGNCSRQCKQQE-DARFGACHRQGI---GFACFCYFK 77 (78)
Q Consensus 11 ~fl~lvL~~a~~~~~~ea~-~C~~~s~~~~G~C~~-~~~C~~~C~~~e-g~~~G~C~~~~~---~~~C~C~~~ 77 (78)
+++.|..|++.- .++|++ .|. .-.|+|.. +.+|++.|++.. +|.+|+|....+ ...|+|.++
T Consensus 13 vvvclsiLLisp-~eV~G~~~cd----~~~G~C~~~~~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C~Cc~~ 80 (90)
T PF10868_consen 13 VVVCLSILLISP-TEVDGRLKCD----SPFGACTPFSSDCNEPCKKFGSNYYGGQCVPVGPPPGDGVCYCCYY 80 (90)
T ss_pred HHHHHHHHcccc-ceeCCeEccC----cccccCCchHHHHHHHHHhhccCCCCceeccCCCCCCCcEEEEecc
Confidence 455554443321 158886 565 45599987 599999999743 689999997432 457998763
No 5
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=97.14 E-value=0.0002 Score=36.44 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=24.0
Q ss_pred CccccHHHhcccCCCCCceeecCCCCcceEee
Q 043728 44 NTGNCSRQCKQQEDARFGACHRQGIGFACFCY 75 (78)
Q Consensus 44 ~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~ 75 (78)
++..|..+|+. -|+.+|+|... ..|+|+
T Consensus 7 n~~~C~~hC~~-~g~~GGyC~~~---~vC~Cr 34 (34)
T PF01097_consen 7 NHSACAAHCLS-IGYRGGYCNGK---GVCVCR 34 (34)
T ss_dssp TCHHHHHHHHH-HTCSEEEEETT---SCEEEE
T ss_pred CHHHHHHHHHH-hCCcceeCCCC---CEEEeC
Confidence 56889999998 69999999963 589996
No 6
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission. The complete covalent structure of the toxins has been deduced: it comprises around 66 amino acid residues and is cross- linked by 4 disulphide bridges [, ]. An anti-epilepsy peptide isolated from scorpion venom [] shows similarity to both scorpion neurotoxins and anti-insect toxins. This family also contains a group of proteinase inhibitors from Arabidopsis thaliana and Brassica spp., which belong to MEROPS inhibitor family I18, clan I-. The Brassica napus (Oil seed rape) and Sinapis alba (White mustard) inhibitors [, ], inhibit the catalytic activity of bovine beta-trypsin and bovine alpha-chymotrypsin, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) [].; GO: 0008200 ion channel inhibitor activity, 0005576 extracellular region; PDB: 2LI7_A 2LJM_A 2B3C_A 1B3C_A 1WWN_A 1JZA_B 1JZB_A 4AEI_A 1AHO_A 1PTX_A ....
Probab=96.66 E-value=0.00089 Score=37.22 Aligned_cols=35 Identities=34% Similarity=0.842 Sum_probs=27.5
Q ss_pred ecCCccccHHHhcccCCCCCceeecCCC-CcceEeec
Q 043728 41 LCLNTGNCSRQCKQQEDARFGACHRQGI-GFACFCYF 76 (78)
Q Consensus 41 ~C~~~~~C~~~C~~~eg~~~G~C~~~~~-~~~C~C~~ 76 (78)
.|..++.|++.|+. +|+.+|+|....+ ...|+|..
T Consensus 14 ~C~~n~~C~~~Ck~-~ga~~GyC~~~~~~g~aCwC~~ 49 (54)
T PF00537_consen 14 SCFPNEYCNKECKK-KGAKSGYCYWWGPYGLACWCEG 49 (54)
T ss_dssp BSSSHHHHHHHHHH-TTSSEEEEECTETTEEEEEEEE
T ss_pred ECCCcchhhHHHHh-cCCCccEeeCCCCCCCeEECCC
Confidence 56667889999997 9999999997532 23699974
No 7
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=96.33 E-value=0.0054 Score=33.75 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=30.1
Q ss_pred CcchhhHHHHHHHHHHHHHhcccchhhhhhhhhcCCcceeecCCccccHHHhcccCCCCCceee
Q 043728 1 MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACH 64 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~~~~~~ea~~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~ 64 (78)
||+..+++=+++++|.||+.... ++ ...+|..|.+|.+.|.. . ..-+|.
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~--~~----------~~~~C~~d~DCp~~c~~-~--~~~kCi 49 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTN--VD----------AIIPCKTDSDCPKDCPP-P--FIPKCI 49 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhcc--cC----------CCcccCccccCCCCCCC-C--cCcEeC
Confidence 89988887666666665554321 11 23577788889888654 1 445554
No 8
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=95.79 E-value=0.0063 Score=33.78 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=33.6
Q ss_pred hhhhcCCcceeecCCccccHHHhcccCCCCCceeec-CCCCcceEeecCC
Q 043728 30 VCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHR-QGIGFACFCYFKC 78 (78)
Q Consensus 30 ~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~-~~~~~~C~C~~~C 78 (78)
.|...=..-.++|. ...|+..|..+.+...|.|.. ......|.|+|+|
T Consensus 10 ~C~~~l~~~~~~C~-~~~C~~~C~~k~~g~~G~C~~~~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 10 QCHEVLPNKPGPCD-PQDCRSLCKKKYKGGVGTCIPKPKGPKQCLCTYNC 58 (58)
T ss_pred cCceeCccCCCCCC-hHHHHHHHHHHcCCCceEeccCCCCCCeeEEEeeC
Confidence 47654333357897 688999999754444499987 2224689999998
No 9
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=95.45 E-value=0.0069 Score=30.40 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=25.9
Q ss_pred ecCCccccHHHhcccCCCCCceeecCCCCcceEee
Q 043728 41 LCLNTGNCSRQCKQQEDARFGACHRQGIGFACFCY 75 (78)
Q Consensus 41 ~C~~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~ 75 (78)
.|..+.+|...|+..-|...|+|-+ .+|.||
T Consensus 2 ~C~~s~~C~~~Ck~~~g~~~gKCmN----~kC~Cy 32 (32)
T PF00451_consen 2 KCTGSKDCWPPCKKATGCLNGKCMN----GKCKCY 32 (32)
T ss_dssp BTSSHHHHHHHHHHHTSSSEEEEET----TEEEEE
T ss_pred ccCCchHHHHHhhhhhCCCCCCccC----CCceeC
Confidence 3666788999999866999999986 589997
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=92.81 E-value=0.13 Score=31.46 Aligned_cols=11 Identities=9% Similarity=0.159 Sum_probs=5.0
Q ss_pred HHHHHHHHhcc
Q 043728 12 FAFFILFAAFD 22 (78)
Q Consensus 12 fl~lvL~~a~~ 22 (78)
||+++||++.+
T Consensus 12 ~LA~lLlisSe 22 (95)
T PF07172_consen 12 LLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHhh
Confidence 33344555544
No 11
>PF06876 SCRL: Plant self-incompatibility response (SCRL) protein; InterPro: IPR010682 This family consists of several plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains [].; GO: 0007165 signal transduction; PDB: 1UGL_A.
Probab=89.26 E-value=0.11 Score=29.36 Aligned_cols=51 Identities=25% Similarity=0.496 Sum_probs=17.9
Q ss_pred hhhhh---hhhhcCCcceeecCCccc--cHHHhcc--cCCCCCceeecCCCCc-ceEeec
Q 043728 25 MAEAK---VCQLRSKTWSGLCLNTGN--CSRQCKQ--QEDARFGACHRQGIGF-ACFCYF 76 (78)
Q Consensus 25 ~~ea~---~C~~~s~~~~G~C~~~~~--C~~~C~~--~eg~~~G~C~~~~~~~-~C~C~~ 76 (78)
+|||. .| ....+|.|.|.++++ |.+.-.+ .....+=.|....+.. .|.|++
T Consensus 9 eVEAn~~k~C-~~~~~f~G~Cg~~G~~~C~~~~~~~~~~~p~~C~C~~~~~~~r~C~C~~ 67 (67)
T PF06876_consen 9 EVEANKMKRC-PDKFNFPGKCGNSGNKTCEKDYKKGKKKKPSNCTCTDSPKNGRLCDCKC 67 (67)
T ss_dssp -----------SSSS-EESSS-HHHHHHHHHH---------SS---B--SSSEEB--SS-
T ss_pred eeecccCCCC-CCCceEcCcCCCCchhHHHHHhhhcccccCCcCEecCCCCCCEEeeCcC
Confidence 47773 49 567789999996554 8777765 1234566676333333 488863
No 12
>PF14866 Toxin_38: Potassium channel toxin
Probab=89.04 E-value=0.21 Score=28.04 Aligned_cols=28 Identities=29% Similarity=0.716 Sum_probs=22.1
Q ss_pred CccccHHHhcccCCCCCceeecCCCCcceEeecC
Q 043728 44 NTGNCSRQCKQQEDARFGACHRQGIGFACFCYFK 77 (78)
Q Consensus 44 ~~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~~~ 77 (78)
.++.|..||.. ++ ..|+|++. +|.|-.|
T Consensus 28 i~~~Ce~HC~~-~~-~~G~C~~~----kCkC~~~ 55 (56)
T PF14866_consen 28 IEGWCEDHCQA-KK-KEGKCHGT----KCKCGKP 55 (56)
T ss_pred HHhHHHHHHHh-cC-cCCeecCc----ccccCCC
Confidence 36779999986 65 78999974 7998765
No 13
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ]. Peptides of the ErgTx family have from 42 to 47 amino acid residues cross-linked by four disulphide bridges. The four disulphide bridges have been assigned as C1-C4, C2-C6, C3-C7 and C5-C8 (see the schematic representation below) []. ErgTxs consist of a triple-stranded beta-sheet and an alpha-helix, as is typical of K+ channel scorpion toxins. There is a large hydrophobic patch on the surface of the toxin, surrounding a central lysine residue located near the beta-hairpin loop between the second and third strands of the beta-sheet. It has been postulated that this hydrophobic patch is likely to form part of the binding surface of the toxin []. Peptides of the ErgTx family possess a Knottin scaffold (see http://knottin.cbs.cnrs.fr). Some proteins known to belong to the ErgTx family are listed below: ErgTx1, ErgTx2 and ErgTx3 from Centruroides elegans (Bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides exilicauda (Bark scorpion). ErgTx1, ErgTx2 and ErgTx3 from Centruroides gracilis (Slenderbrown scorpion) (Florida bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides limpidus limpidus (Mexican scorpion). ErgTx1, ErgTx2, ErgTx3, ErgTx4, ErgTx5 and gamma-KTx 4.12 from Centruroides sculpturatus (Bark scorpion). ErgTx, ErgTx2, ErgTx3, ErgTx4 and ErgTx5 from Centruroides noxius (Mexican scorpion). ; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1NE5_A 1PX9_A.
Probab=85.74 E-value=0.53 Score=24.43 Aligned_cols=25 Identities=36% Similarity=0.817 Sum_probs=19.1
Q ss_pred ccccHHHhcccCCCCCceeecCCCCcceEe
Q 043728 45 TGNCSRQCKQQEDARFGACHRQGIGFACFC 74 (78)
Q Consensus 45 ~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C 74 (78)
...|+..|++ .|-.+|.|.++ +|.|
T Consensus 17 y~qc~~cckk-ag~~~gtc~~f----kckc 41 (41)
T PF08086_consen 17 YGQCDDCCKK-AGHRGGTCVYF----KCKC 41 (41)
T ss_dssp -HHHHHHHHH-HTSS-EEEESS----SEEE
T ss_pred HHHHHHHHHH-hCCCCceeEEE----EecC
Confidence 3578999996 89899999864 7876
No 14
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins. These toxins are named parabutoxins, that binds and inhibit voltage-sensitive potassium channels and inhibit the vertebrate potassium channel Kv1.1 with low affinity. Furthermore, they lack the crucial pore-plugging lysine. In addition, the second important residue of the dyad, the hydrophobic residue (Phe or Tyr) is also missing [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=84.07 E-value=0.21 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=22.5
Q ss_pred ccccHHHhcccCCCCCceeecCCCCcceEee
Q 043728 45 TGNCSRQCKQQEDARFGACHRQGIGFACFCY 75 (78)
Q Consensus 45 ~~~C~~~C~~~eg~~~G~C~~~~~~~~C~C~ 75 (78)
|.-|...|+. |.++.|.|++. .+|.|.
T Consensus 10 demcviyckg-eeystgvcdgp---qkckcs 36 (37)
T PF08119_consen 10 DEMCVIYCKG-EEYSTGVCDGP---QKCKCS 36 (37)
T ss_pred CceEEEEecC-ceeccccccCC---cccccC
Confidence 6778999997 99999999875 578875
No 15
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=77.92 E-value=2.1 Score=20.02 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhc
Q 043728 8 FALLFAFFILFAAF 21 (78)
Q Consensus 8 ~~l~fl~lvL~~a~ 21 (78)
|+++.++++|++..
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 45555555555544
No 16
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A.
Probab=77.86 E-value=1.2 Score=25.17 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred hhhhcCCcceeecCCccccHHHhcccCCCCCceeecC
Q 043728 30 VCQLRSKTWSGLCLNTGNCSRQCKQQEDARFGACHRQ 66 (78)
Q Consensus 30 ~C~~~s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~~ 66 (78)
.|...+..+.|.=+ ..|++.||. -|..+|.|...
T Consensus 8 RCs~~ss~~TgilW--~sC~~~Ckc-~G~~gG~C~~~ 41 (59)
T PF14865_consen 8 RCSRWSSWFTGILW--KSCNDRCKC-LGHDGGECVLS 41 (59)
T ss_dssp CCCHS-TTTTTTTT---CCHHHHHT-TT-SEEEEEE-
T ss_pred hcCccccccccccH--hHhhHHHHH-cCCCCCceEeC
Confidence 35544555555543 789999996 89999999864
No 17
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=77.36 E-value=0.91 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=17.1
Q ss_pred hhhhhhhhhcCCcce-eecCCccccHHHhcccCCCCCceeec
Q 043728 25 MAEAKVCQLRSKTWS-GLCLNTGNCSRQCKQQEDARFGACHR 65 (78)
Q Consensus 25 ~~ea~~C~~~s~~~~-G~C~~~~~C~~~C~~~eg~~~G~C~~ 65 (78)
.+||..|...-..|. -+|.+ ++|. |+- .|...|.|..
T Consensus 16 KVEA~~C~g~Cs~Fe~ppCgs-s~Cr--CiP-~~l~~G~C~~ 53 (120)
T PF08027_consen 16 KVEACDCSGVCSPFEMPPCGS-SDCR--CIP-WGLFVGFCIY 53 (120)
T ss_dssp ------SECEE-TTSSSCCC--TTSE--EEE--SSS-EEEE-
T ss_pred eeeeeccCccccCCcCCCCCC-CCee--EEE-eeecceEEEC
Confidence 588888864433332 35763 6676 775 7888899986
No 18
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=75.85 E-value=1.3 Score=27.33 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=16.5
Q ss_pred cccHHHhcccCCCCCceeecCCCCcceEe
Q 043728 46 GNCSRQCKQQEDARFGACHRQGIGFACFC 74 (78)
Q Consensus 46 ~~C~~~C~~~eg~~~G~C~~~~~~~~C~C 74 (78)
.-|.+.|.. .+-++--|....|+..|+|
T Consensus 28 ~yC~~fCgs-a~C~~Y~c~~l~~gk~C~C 55 (98)
T PF10690_consen 28 YYCKKFCGS-ARCSLYGCYSLHPGKICKC 55 (98)
T ss_dssp H-HHHHHHH-TT-SEEEEEEETTEEEEEE
T ss_pred hHHHHhcCC-CCCcEEEEEEECCCeEEEE
Confidence 458889986 6766666766554333444
No 19
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=70.50 E-value=5 Score=19.12 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 043728 8 FALLFAFFILFAAF 21 (78)
Q Consensus 8 ~~l~fl~lvL~~a~ 21 (78)
|++++++++|++..
T Consensus 8 f~livVLFILLIIi 21 (26)
T TIGR01732 8 FALIVVLFILLVIV 21 (26)
T ss_pred hHHHHHHHHHHHHh
Confidence 44444555544443
No 20
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=67.69 E-value=4.1 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=18.2
Q ss_pred CcchhhHHHHHHHHHHHHHhccc
Q 043728 1 MAKFTTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~~~ 23 (78)
|+.++=+++|++.|+||+++++.
T Consensus 18 m~TfADlmTLLm~FFVlL~S~S~ 40 (302)
T PRK08944 18 LATFADLMSLLMCFFVLLLSFSE 40 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567788899999998888864
No 21
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=63.48 E-value=7.8 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=12.4
Q ss_pred CcchhhHHHH--HHHHHHHHHhcccchhhhhhh
Q 043728 1 MAKFTTTFAL--LFAFFILFAAFDVPMAEAKVC 31 (78)
Q Consensus 1 Mak~~~~~~l--~fl~lvL~~a~~~~~~ea~~C 31 (78)
|++++++..+ ++++++|+.+.+ +++.+.|
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~q~~ 31 (286)
T KOG4742|consen 1 MATTIALTKNLLLTLLFLLLQSSS--TVASQNC 31 (286)
T ss_pred CcchhhhhhhHHHHHHHHHHHHHH--hhhcccC
Confidence 6665444332 233333333222 4555555
No 22
>smart00004 NL Domain found in Notch and Lin-12. The Notch protein is essential for the proper differentiation of the Drosophila ectoderm. This protein contains 3 NL domains.
Probab=61.79 E-value=5.1 Score=20.61 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=12.7
Q ss_pred CccccHHHhcccC-CCCCcee
Q 043728 44 NTGNCSRQCKQQE-DARFGAC 63 (78)
Q Consensus 44 ~~~~C~~~C~~~e-g~~~G~C 63 (78)
.++.|+..|.+.+ +|.||-|
T Consensus 18 ~dg~CD~~CN~~~C~~DG~DC 38 (38)
T smart00004 18 GDGVCDEECNNAECLWDGGDC 38 (38)
T ss_pred CCCccchhhCcccCCCCCCCC
Confidence 4677888887633 3666654
No 23
>PLN00214 putative protein; Provisional
Probab=61.15 E-value=8.5 Score=24.50 Aligned_cols=28 Identities=43% Similarity=0.583 Sum_probs=18.0
Q ss_pred CcchhhHHHHHHHHHHHHHhcc----cchhhh
Q 043728 1 MAKFTTTFALLFAFFILFAAFD----VPMAEA 28 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~~----~~~~ea 28 (78)
|||+.+-+..+|+.+.|+-++- ..++||
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 32 (115)
T PLN00214 1 MSKFSSQITTLFIVVALVCAFVPVFSVEEAEA 32 (115)
T ss_pred CCccccchhHHHHHHHHHHhcccccchhhhHH
Confidence 8998766666676666665553 125776
No 24
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=57.13 E-value=12 Score=20.62 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhcc
Q 043728 7 TFALLFAFFILFAAFD 22 (78)
Q Consensus 7 ~~~l~fl~lvL~~a~~ 22 (78)
+++|++.++|++.+.+
T Consensus 24 lmTLLl~fFVlL~s~s 39 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666665
No 25
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=54.43 E-value=12 Score=26.35 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHHHHHHHhccc
Q 043728 2 AKFTTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 2 ak~~~~~~l~fl~lvL~~a~~~ 23 (78)
..+.=+++|+|.|+||+++.+.
T Consensus 18 vTyaDl~TLLL~FFVlL~smS~ 39 (257)
T PRK08457 18 VPYADFLSLLLALFIALYAISA 39 (257)
T ss_pred eeHHHHHHHHHHHHHHHHHHHh
Confidence 3445577888888888887763
No 26
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=53.81 E-value=17 Score=17.66 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=11.9
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 043728 1 MAKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~ 21 (78)
|+..+..+.++..+.+||.|.
T Consensus 1 MEa~vY~~ll~~tlgilffAI 21 (29)
T PF01405_consen 1 MEALVYTFLLIGTLGILFFAI 21 (29)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhh
Confidence 666666666555555555544
No 27
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=53.22 E-value=19 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=13.1
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 043728 1 MAKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~ 21 (78)
|+|..+.-+|++|+|++|...
T Consensus 1 MS~iSk~sslcLlll~~ff~s 21 (119)
T PF07265_consen 1 MSKISKVSSLCLLLLVVFFLS 21 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHc
Confidence 777666656677777654443
No 28
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=51.57 E-value=5.7 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=5.5
Q ss_pred HhcccCCCCCceeec
Q 043728 51 QCKQQEDARFGACHR 65 (78)
Q Consensus 51 ~C~~~eg~~~G~C~~ 65 (78)
.|+- -|..|..|+-
T Consensus 49 vCkP-lG~~Ge~Ch~ 62 (97)
T PF06607_consen 49 VCKP-LGQEGEPCHP 62 (97)
T ss_dssp CCEE--B-TT-EE-T
T ss_pred ceeC-CCcCcCcccC
Confidence 4654 5556666653
No 29
>CHL00031 psbT photosystem II protein T
Probab=49.60 E-value=28 Score=17.40 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=13.3
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 043728 1 MAKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~ 21 (78)
|+..+.++.++..+-+||.|.
T Consensus 1 MEalvYtfll~~tlgilFFAI 21 (33)
T CHL00031 1 MEALVYTFLLVSTLGIIFFAI 21 (33)
T ss_pred CchhHHHHHHHHHHHHHHHhh
Confidence 677777766655555666554
No 30
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.27 E-value=19 Score=23.85 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=11.7
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 043728 1 MAKFTTTFALLFAFFILFA 19 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~ 19 (78)
|-.+.++++++|.+++.|.
T Consensus 1 Mk~l~kl~~~~~alil~~s 19 (152)
T COG4808 1 MKALNKLFSLVVALVLVFS 19 (152)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 5567777776666555443
No 31
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=48.19 E-value=32 Score=16.97 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=12.5
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 043728 1 MAKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~ 21 (78)
|+..+..+.|...+-++|.|.
T Consensus 1 MEal~Ytfll~~tlgiiFFAI 21 (31)
T PRK11875 1 MESFAYILILTLALVTLFFAI 21 (31)
T ss_pred ChhHHHHHHHHHHHHHHHHhh
Confidence 667666666555555555544
No 32
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=48.09 E-value=18 Score=24.91 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHHHHHHHhccc
Q 043728 2 AKFTTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 2 ak~~~~~~l~fl~lvL~~a~~~ 23 (78)
....=+++|++.|+||+++.+.
T Consensus 14 ~TyaDm~TLLL~FFVlL~s~S~ 35 (225)
T PRK06742 14 TTFTDLTMLLLTFFVLLVATSK 35 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh
Confidence 3445577888888888887763
No 33
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=47.94 E-value=37 Score=20.13 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=22.2
Q ss_pred hhhhh---hhhhc-CCcceeecCCccccHHHhcccCCCCCceeec
Q 043728 25 MAEAK---VCQLR-SKTWSGLCLNTGNCSRQCKQQEDARFGACHR 65 (78)
Q Consensus 25 ~~ea~---~C~~~-s~~~~G~C~~~~~C~~~C~~~eg~~~G~C~~ 65 (78)
.++|+ .|..- ...+.|.|..++ ..+|+......++.|..
T Consensus 24 pA~A~dyp~Clq~~~~g~~g~C~y~t--~~QC~asASGr~a~C~~ 66 (82)
T PF12071_consen 24 PAQARDYPYCLQGGGWGYPGDCSYST--YEQCRASASGRGAYCGI 66 (82)
T ss_pred chhhcCCcEEEeCCCCCCCccCCcCC--HHHHHHHhcccCccccc
Confidence 45554 68751 223335564322 57888766667888864
No 34
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=43.15 E-value=25 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHhccc
Q 043728 4 FTTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 4 ~~~~~~l~fl~lvL~~a~~~ 23 (78)
+.=+++|++.|+||+++.+.
T Consensus 22 yaDl~TLLL~FFVlL~smS~ 41 (252)
T PRK06667 22 YGDMVTLLLCFFVMLFTTND 41 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34466677777777776653
No 35
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=38.99 E-value=25 Score=18.99 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=7.8
Q ss_pred CcchhhHHHHHHHHHH
Q 043728 1 MAKFTTTFALLFAFFI 16 (78)
Q Consensus 1 Mak~~~~~~l~fl~lv 16 (78)
|-|...+++++|++..
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (92)
T TIGR02052 1 MKKLATLLALFVLTSL 16 (92)
T ss_pred ChhHHHHHHHHHHhcc
Confidence 4455555554444333
No 36
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.51 E-value=36 Score=18.50 Aligned_cols=8 Identities=13% Similarity=-0.259 Sum_probs=3.8
Q ss_pred hhhhhhhh
Q 043728 25 MAEAKVCQ 32 (78)
Q Consensus 25 ~~ea~~C~ 32 (78)
.+.+-.|.
T Consensus 25 K~ygYkht 32 (50)
T PF12606_consen 25 KAYGYKHT 32 (50)
T ss_pred hccccccc
Confidence 34444555
No 37
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=36.78 E-value=41 Score=23.12 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHhccc
Q 043728 4 FTTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 4 ~~~~~~l~fl~lvL~~a~~~ 23 (78)
+.=+++|++.|+||+.+.+.
T Consensus 19 yaD~~TlLlafFvlL~s~s~ 38 (230)
T PRK06925 19 FSDLITLILVFFILLFSMSQ 38 (230)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34456666666666666653
No 38
>PF00066 Notch: LNR domain; InterPro: IPR000800 The Notch domain is also called the 'DSL' domain or the Lin-12/Notch repeat (LNR). The LNR region is present only in Notch related proteins C-terminal to EGF repeats. The lin-12/Notch proteins act as transmembrane receptors for intercellular signals that specify cell fates during animal development. In response to a ligand, proteolytic cleavages release the intracellular domain of Notch, which then gains access to the nucleus and acts as a transcriptional co-activator []. The LNR region is supposed to negatively regulate the Lin-12/Notch proteins activity. It is a triplication of an around 35-40 amino acids module present on the extracellular part of the protein [, ]. Each module contains six cysteine residues engaged in three disulphide bonds and three conserved aspartate and asparagine residues []. The biochemical characterisation of a recombinantly expressed LIN-12.1 module from the human Notch1 receptor indicate that the disulphide bonds are formed between the first and fifth, second and fourth, and third and sixth cysteines. The formation of this particular disulphide isomer is favored by the presence of Ca2+, which is also required to maintain the structural integrity of the rLIN-12.1 module. The conserved aspartate and asparagine residues are likely to be important for Ca2+ binding, and thereby contribute to the native fold.; GO: 0030154 cell differentiation, 0016020 membrane; PDB: 3ETO_A 3I08_A 1PB5_A 3L95_X 2OO4_A.
Probab=35.74 E-value=6 Score=20.17 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=8.7
Q ss_pred CccccHHHhcccC-CCCCcee
Q 043728 44 NTGNCSRQCKQQE-DARFGAC 63 (78)
Q Consensus 44 ~~~~C~~~C~~~e-g~~~G~C 63 (78)
.++.|+..|.+.+ +|.+|-|
T Consensus 17 gng~CD~~Cn~~~C~~DGgDC 37 (38)
T PF00066_consen 17 GNGVCDPECNNPECGFDGGDC 37 (38)
T ss_dssp TSSS--GGG-SCCCGHHHGTT
T ss_pred CCCccChhhCccccCCCCCcC
Confidence 3566777776532 2444544
No 39
>PF15106 TMEM156: TMEM156 protein family
Probab=34.43 E-value=37 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.572 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhccc
Q 043728 5 TTTFALLFAFFILFAAFDV 23 (78)
Q Consensus 5 ~~~~~l~fl~lvL~~a~~~ 23 (78)
..++.|+|+++++|+...+
T Consensus 179 YvLVllVfiflii~iI~KI 197 (226)
T PF15106_consen 179 YVLVLLVFIFLIILIIYKI 197 (226)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567778888888877763
No 40
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=39 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=14.0
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 043728 1 MAKFTTTFALLFAFFILFA 19 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~ 19 (78)
||++..++.++++|++|++
T Consensus 1 M~~~~~~~~v~v~l~v~lv 19 (477)
T KOG1348|consen 1 MAPLMMVWKVLVFLLVLLV 19 (477)
T ss_pred CCcchhhHHHHHHHHHHHH
Confidence 8888877777666666665
No 41
>KOG4606 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=48 Score=21.14 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=12.9
Q ss_pred hhhhhhhhhcCCcceeecCC
Q 043728 25 MAEAKVCQLRSKTWSGLCLN 44 (78)
Q Consensus 25 ~~ea~~C~~~s~~~~G~C~~ 44 (78)
.+-|+.|..--..|+-.|.+
T Consensus 94 sIia~rcr~vL~~fnmSCDd 113 (126)
T KOG4606|consen 94 SIIAARCRTVLAEFNMSCDD 113 (126)
T ss_pred HHHHHHHHHHhhcccCCcCC
Confidence 45567788766666666654
No 42
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=32.42 E-value=46 Score=18.79 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=10.8
Q ss_pred CcchhhHHHHHHHHH-HHHHhcc
Q 043728 1 MAKFTTTFALLFAFF-ILFAAFD 22 (78)
Q Consensus 1 Mak~~~~~~l~fl~l-vL~~a~~ 22 (78)
|+|.+-+++.++++- +++.+.+
T Consensus 9 mtriVLLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLIYSAIG 31 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 566655655444443 3444443
No 43
>COG5510 Predicted small secreted protein [Function unknown]
Probab=32.27 E-value=66 Score=17.08 Aligned_cols=8 Identities=38% Similarity=0.218 Sum_probs=3.4
Q ss_pred chhhHHHH
Q 043728 3 KFTTTFAL 10 (78)
Q Consensus 3 k~~~~~~l 10 (78)
|++-++++
T Consensus 4 ~t~l~i~~ 11 (44)
T COG5510 4 KTILLIAL 11 (44)
T ss_pred HHHHHHHH
Confidence 34444443
No 44
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=32.18 E-value=49 Score=23.58 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHhcc
Q 043728 5 TTTFALLFAFFILFAAFD 22 (78)
Q Consensus 5 ~~~~~l~fl~lvL~~a~~ 22 (78)
.=+++|++.|+||+.+.+
T Consensus 22 AD~mTLLlaFFVlL~smS 39 (281)
T PRK09038 22 ADFITLLFAFFVVMYAIS 39 (281)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566666666666554
No 45
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.01 E-value=35 Score=26.04 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q 043728 4 FTTTFALLFAFFILFAAFD 22 (78)
Q Consensus 4 ~~~~~~l~fl~lvL~~a~~ 22 (78)
++.++++ |++++||++..
T Consensus 10 ~irIiaf-f~A~~Lfl~vn 27 (403)
T COG4856 10 LIRIIAF-FFAILLFLYVN 27 (403)
T ss_pred hHHHHHH-HHHHHhheeec
Confidence 3566664 55556666554
No 46
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=31.52 E-value=52 Score=22.21 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=8.2
Q ss_pred CcchhhHHHHHHHH
Q 043728 1 MAKFTTTFALLFAF 14 (78)
Q Consensus 1 Mak~~~~~~l~fl~ 14 (78)
|.|+.+.+.+++.+
T Consensus 1 m~~~~~~~~~il~~ 14 (192)
T PRK10893 1 MSKTRRWVIILLAL 14 (192)
T ss_pred CchhHHHHHHHHHH
Confidence 78877765443333
No 47
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=30.84 E-value=29 Score=16.87 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=2.8
Q ss_pred HHHHhc
Q 043728 16 ILFAAF 21 (78)
Q Consensus 16 vL~~a~ 21 (78)
+||+++
T Consensus 12 vLfvat 17 (29)
T PF11587_consen 12 VLFVAT 17 (29)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444544
No 48
>PRK06778 hypothetical protein; Validated
Probab=30.16 E-value=56 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q 043728 4 FTTTFALLFAFFILFAAFD 22 (78)
Q Consensus 4 ~~~~~~l~fl~lvL~~a~~ 22 (78)
+.=+++|++.|+||+.+.+
T Consensus 26 YAD~~TLLLaFFVlL~smS 44 (289)
T PRK06778 26 FADFTLAMMALFMVLWIVN 44 (289)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445666666666666555
No 49
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=29.41 E-value=60 Score=22.71 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHhcc
Q 043728 5 TTTFALLFAFFILFAAFD 22 (78)
Q Consensus 5 ~~~~~l~fl~lvL~~a~~ 22 (78)
.=+++|++.|+||+.+.+
T Consensus 24 AD~vTlLlaFFvlL~s~s 41 (259)
T PRK07734 24 ADLLTLLLALFIVLFAMS 41 (259)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334555555555555444
No 50
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=29.28 E-value=72 Score=19.18 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=12.7
Q ss_pred CcchhhHHHHHHHHHHHHHhc
Q 043728 1 MAKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~ 21 (78)
||-|+--..+++-||+|+++-
T Consensus 1 MAvSvLrltivlGLlvLIltC 21 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILTC 21 (88)
T ss_pred CchHHHHHHHHHHHHHHHhhh
Confidence 777765555556566655543
No 51
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=29.20 E-value=79 Score=17.01 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=5.1
Q ss_pred CcchhhHHHH
Q 043728 1 MAKFTTTFAL 10 (78)
Q Consensus 1 Mak~~~~~~l 10 (78)
|-|++-++.+
T Consensus 1 ~kk~rwiili 10 (47)
T PRK10299 1 MKKFRWVVLV 10 (47)
T ss_pred CceeeehHHH
Confidence 5566444443
No 52
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=28.74 E-value=43 Score=20.20 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=5.2
Q ss_pred HHHHHHHHhcccc
Q 043728 12 FAFFILFAAFDVP 24 (78)
Q Consensus 12 fl~lvL~~a~~~~ 24 (78)
||+|+.++...|+
T Consensus 24 fL~iLi~~~~~m~ 36 (84)
T COG3630 24 FLSILIYAMRGMG 36 (84)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444444
No 53
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=28.55 E-value=49 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=7.3
Q ss_pred hHHHHHHHHHH-HHHhc
Q 043728 6 TTFALLFAFFI-LFAAF 21 (78)
Q Consensus 6 ~~~~l~fl~lv-L~~a~ 21 (78)
+|++.+++||+ .||..
T Consensus 64 sfiatliillviffviy 80 (150)
T PF06084_consen 64 SFIATLIILLVIFFVIY 80 (150)
T ss_pred hHHHHHHHHHHHhheeE
Confidence 45554444444 44444
No 54
>PRK02710 plastocyanin; Provisional
Probab=28.34 E-value=72 Score=19.58 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=4.3
Q ss_pred CcchhhHHH
Q 043728 1 MAKFTTTFA 9 (78)
Q Consensus 1 Mak~~~~~~ 9 (78)
|+|....+.
T Consensus 1 ~~~~~~~~~ 9 (119)
T PRK02710 1 MAKRLRSIA 9 (119)
T ss_pred CchhHHHHH
Confidence 566433333
No 55
>PF01815 Rop: Rop protein; InterPro: IPR000769 The Rop protein regulates plasmid DNA replication by modulating the initiation of transcription of the primer RNA precursor. Processing of the precursor, RNAII, is inhibited by hydrogen bonding of RNAII to its complementary sequence in RNAI. Rop increases the affinity of RNAI for RNAII and thus decreases the rate of replication initiation events. The 3D structure of Rop has been determined by X-ray crystallography and refined to 1.7A resolution. The 63 amino acid protein is a homodimer, each monomer consisting almost entirely of two alpha-helices, the whole molecule forming a highly regular four-alpha-helix bundle []. This can be approximated by a four-stranded rope, with radius 7.0 A, a left-handed helical twist, and pitch 172.5 A. A very compact packing of side chains in the helix interfaces of the Rop coiled-coil structure is presumed to account for its high stability []. The overall details of the structure have been confirmed by proton NMR [, ].; PDB: 1GTO_C 2IJH_A 2IJJ_B 1GMG_A 1ROP_A 1NKD_A 1QX8_A 1F4M_D 2GHY_B 3K79_A ....
Probab=28.31 E-value=28 Score=19.62 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=15.5
Q ss_pred CcchhhHHHHHHHHHHHHHhcccchhhhhhhhh
Q 043728 1 MAKFTTTFALLFAFFILFAAFDVPMAEAKVCQL 33 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~a~~~~~~ea~~C~~ 33 (78)
||||+.-=+|++|== +-... -..+|..|++
T Consensus 11 MAkFI~aQsLlLLEK--LneLd-lD~~A~~CE~ 40 (60)
T PF01815_consen 11 MAKFIQAQSLLLLEK--LNELD-LDEEADMCER 40 (60)
T ss_dssp HHHHHHHHHHHHHHH--HHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH--hhhcC-chHHHHHHHH
Confidence 788887766322111 11111 1466778875
No 56
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=26.48 E-value=43 Score=18.72 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhc
Q 043728 8 FALLFAFFILFAAF 21 (78)
Q Consensus 8 ~~l~fl~lvL~~a~ 21 (78)
+++++++|++|+-.
T Consensus 38 l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 38 LAAVFLFIVVFVYL 51 (56)
T ss_pred HHHHHHHHhheeEE
Confidence 34456666655543
No 57
>PLN00212 glutelin; Provisional
Probab=26.27 E-value=63 Score=25.26 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=11.1
Q ss_pred CcchhhHHHHHHHHHHHH
Q 043728 1 MAKFTTTFALLFAFFILF 18 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~ 18 (78)
||+..+++++.|.||+|+
T Consensus 1 ~~~~~~~l~~~~~~l~l~ 18 (493)
T PLN00212 1 ASSAFSRLSICFCVLLLC 18 (493)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 777777666655555544
No 58
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=26.15 E-value=55 Score=19.60 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=12.1
Q ss_pred cchhhHHHHHHHHHHHHHhc
Q 043728 2 AKFTTTFALLFAFFILFAAF 21 (78)
Q Consensus 2 ak~~~~~~l~fl~lvL~~a~ 21 (78)
.|+..+.+.+|+.+.++++.
T Consensus 52 ~r~T~iLa~lF~i~~i~L~~ 71 (86)
T COG1314 52 TRTTAILAVLFFIISLVLAL 71 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554
No 59
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=25.60 E-value=1.1e+02 Score=18.82 Aligned_cols=8 Identities=38% Similarity=0.414 Sum_probs=3.0
Q ss_pred CcchhhHH
Q 043728 1 MAKFTTTF 8 (78)
Q Consensus 1 Mak~~~~~ 8 (78)
|+.=..+|
T Consensus 1 M~~Ktnlf 8 (93)
T PF03058_consen 1 MVSKTNLF 8 (93)
T ss_pred CcchhhhH
Confidence 33333343
No 60
>PLN03207 stomagen; Provisional
Probab=25.60 E-value=70 Score=20.07 Aligned_cols=9 Identities=22% Similarity=0.903 Sum_probs=6.1
Q ss_pred cccHHHhcc
Q 043728 46 GNCSRQCKQ 54 (78)
Q Consensus 46 ~~C~~~C~~ 54 (78)
..|...|+.
T Consensus 82 rgcr~kc~~ 90 (113)
T PLN03207 82 RGCRYKCRA 90 (113)
T ss_pred cCccccccc
Confidence 347777876
No 61
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=25.51 E-value=88 Score=18.35 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHhcc
Q 043728 5 TTTFALLFAFFILFAAFD 22 (78)
Q Consensus 5 ~~~~~l~fl~lvL~~a~~ 22 (78)
+++++|+++++.|+.++.
T Consensus 27 ~sF~~L~~~l~~Ll~~t~ 44 (75)
T PF08636_consen 27 VSFAALFLVLLALLFLTY 44 (75)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 456666666666555554
No 62
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.06 E-value=69 Score=19.88 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHHhc
Q 043728 14 FFILFAAF 21 (78)
Q Consensus 14 ~lvL~~a~ 21 (78)
+|+|+++.
T Consensus 10 lLll~l~a 17 (107)
T PF15330_consen 10 LLLLSLAA 17 (107)
T ss_pred HHHHHHHH
Confidence 33333333
No 63
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=24.23 E-value=1e+02 Score=15.23 Aligned_cols=20 Identities=35% Similarity=0.999 Sum_probs=13.8
Q ss_pred cccHHHhcccCCCCCceeecCCCCcceEe
Q 043728 46 GNCSRQCKQQEDARFGACHRQGIGFACFC 74 (78)
Q Consensus 46 ~~C~~~C~~~eg~~~G~C~~~~~~~~C~C 74 (78)
.+|++.|.+ . |+|.+ ..|.|
T Consensus 13 ~kC~~CCgg----~-GkC~G----pqClC 32 (32)
T PF05294_consen 13 KKCRDCCGG----R-GKCFG----PQCLC 32 (32)
T ss_dssp HHHHHHCTT----S-EEEET----TEEEE
T ss_pred HHHHHHhCC----C-CeEcC----CcccC
Confidence 467777765 2 99986 36776
No 64
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=23.94 E-value=86 Score=22.97 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHhcc
Q 043728 5 TTTFALLFAFFILFAAFD 22 (78)
Q Consensus 5 ~~~~~l~fl~lvL~~a~~ 22 (78)
.=|++|++.|+||+.+.+
T Consensus 31 AD~vTLLLaFFVlL~smS 48 (317)
T PRK09041 31 ADFMTAMMAFFLVMWLLS 48 (317)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555554
No 65
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=22.92 E-value=80 Score=18.24 Aligned_cols=15 Identities=27% Similarity=0.777 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHh
Q 043728 6 TTFALLFAFFILFAA 20 (78)
Q Consensus 6 ~~~~l~fl~lvL~~a 20 (78)
-.+|++|+.|++.+.
T Consensus 13 G~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 13 GIFAVLFVWLLFYVL 27 (71)
T ss_pred CcHHHHHHHHHHHHH
Confidence 356777777765443
No 66
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=22.88 E-value=52 Score=21.02 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=6.1
Q ss_pred CcchhhHHHH
Q 043728 1 MAKFTTTFAL 10 (78)
Q Consensus 1 Mak~~~~~~l 10 (78)
|+.+.+++.+
T Consensus 1 ~~~~~~~~~~ 10 (178)
T TIGR01614 1 MASSLSLLLF 10 (178)
T ss_pred CchhHHHHHH
Confidence 6676666543
No 67
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=22.53 E-value=35 Score=16.29 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=10.6
Q ss_pred ecCCccccHHHhccc
Q 043728 41 LCLNTGNCSRQCKQQ 55 (78)
Q Consensus 41 ~C~~~~~C~~~C~~~ 55 (78)
.|-.|++|-..|+=.
T Consensus 7 ~Ck~DsDCl~~CiC~ 21 (27)
T cd00150 7 ECKRDSDCLAECICL 21 (27)
T ss_pred eccccccccCCCEEc
Confidence 566788887777653
No 68
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=22.43 E-value=34 Score=17.31 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=19.0
Q ss_pred cccHHHhcccCC--CCCceeecCCCCcceEeecC
Q 043728 46 GNCSRQCKQQED--ARFGACHRQGIGFACFCYFK 77 (78)
Q Consensus 46 ~~C~~~C~~~eg--~~~G~C~~~~~~~~C~C~~~ 77 (78)
..|-..|+.+.| |..-+|++ .+|.|-+.
T Consensus 4 ~~CWa~CqaqhgiyFRRAyCdG----s~C~Cvf~ 33 (35)
T PF11415_consen 4 QSCWANCQAQHGIYFRRAYCDG----SRCKCVFN 33 (35)
T ss_dssp HHHHHHHHHHS-TTEEEEEEET----TEEEEEE-
T ss_pred HHHHHHHHHhhcchhhhhhccC----CeeEEEec
Confidence 456778887555 57788987 47988763
No 69
>PF13998 MgrB: MgrB protein
Probab=21.85 E-value=57 Score=15.84 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=11.2
Q ss_pred HHHhcccCCCCCceeec
Q 043728 49 SRQCKQQEDARFGACHR 65 (78)
Q Consensus 49 ~~~C~~~eg~~~G~C~~ 65 (78)
++.|..-|.|..|.|.-
T Consensus 7 d~~CDQg~~F~~GiC~i 23 (29)
T PF13998_consen 7 DSYCDQGEQFFSGICSI 23 (29)
T ss_pred HHHhcCCCCceeeeeEE
Confidence 34565556688888863
No 70
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=21.48 E-value=1.3e+02 Score=17.19 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=8.4
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 043728 1 MAKFTTTFALLFAFFILFA 19 (78)
Q Consensus 1 Mak~~~~~~l~fl~lvL~~ 19 (78)
||. ++|.+.||.+.|++
T Consensus 1 MA~--Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MAS--KLIVIALLCVALVA 17 (65)
T ss_pred Ccc--hhhHHHHHHHHHHH
Confidence 555 34444455555444
No 71
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.84 E-value=1.3e+02 Score=17.40 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 043728 7 TFALLFAFFILFAA 20 (78)
Q Consensus 7 ~~~l~fl~lvL~~a 20 (78)
++++.|++|++++.
T Consensus 5 I~Aiaf~vLvi~l~ 18 (90)
T PF06103_consen 5 IAAIAFAVLVIFLI 18 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 72
>smart00286 PTI Plant trypsin inhibitors.
Probab=20.66 E-value=39 Score=16.38 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.3
Q ss_pred eecCCccccHHHhccc
Q 043728 40 GLCLNTGNCSRQCKQQ 55 (78)
Q Consensus 40 G~C~~~~~C~~~C~~~ 55 (78)
-.|-.|++|-..|+=.
T Consensus 8 m~Ck~DsDCl~~CiC~ 23 (29)
T smart00286 8 MECKRDSDCMAECICL 23 (29)
T ss_pred hccccccCcccCCEEc
Confidence 3566788888877763
No 73
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=20.61 E-value=31 Score=21.94 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=4.4
Q ss_pred ccHHHhcc
Q 043728 47 NCSRQCKQ 54 (78)
Q Consensus 47 ~C~~~C~~ 54 (78)
.|+=.|.+
T Consensus 38 ~C~YYC~~ 45 (120)
T PF07771_consen 38 GCNYYCWN 45 (120)
T ss_pred CcEEEcCC
Confidence 35556654
Done!