BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043730
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 216/382 (56%), Gaps = 51/382 (13%)
Query: 53 VRVAVRLRPRNAEETVADADFA---------DCVELQTELKRLKLRKNNWDSDTYEFDEV 103
++V R RP N E A + F +C+ + ++ Y FD+V
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKV--------------YLFDKV 58
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMV 162
F +ASQ++VY AK +V VL GYNGT+ AYGQT +GKT T+ G +GD + +GI+
Sbjct: 59 FKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGD--SVKQGIIP 116
Query: 163 RSMEDIL----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGA 218
R + DI A Y ++YM+ I+DLLD + N+S+ ED K + GA
Sbjct: 117 RIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHED-KNRVPYVKGA 175
Query: 219 TLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEIN 278
T + + E++ G+++R A T +N SSRSH++ +I+VK+ + ++ LS
Sbjct: 176 TERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSG--- 232
Query: 279 HASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALA 338
KL +VDLAGSE++ K+G+EG +L+EAK+IN SLSALG I+ALA
Sbjct: 233 ----------------KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALA 276
Query: 339 E-NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENM 397
+ N H+P RDSKLTR+L++S GG ART++++ P+ + ET ST+ FG+RA V+N+
Sbjct: 277 DGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNV 336
Query: 398 LKIKEEFDYKSLSRRLEIQLDK 419
+ + EE + RR E + +K
Sbjct: 337 VCVNEELTAEEWKRRYEKEKEK 358
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 183/322 (56%), Gaps = 25/322 (7%)
Query: 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTS 156
++ FD VF S Q +++ KP V+ +L+GYNGTV AYGQTG GK++T+ +D
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 157 SRGIMVRSME----DILAXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGD 212
RG++ R +E IL+ Y+++YME I+DLL P NDN+ + E+ G
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRG- 166
Query: 213 VSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREED 272
V + G + + Q E++R G R A T +N ESSRSH+I +I + + V
Sbjct: 167 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNV----- 221
Query: 273 LSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGK 332
E A + +L +VDLAGSE++ K+G+ G LEEAK IN SLSALG
Sbjct: 222 ---ETGSA-----------KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGM 267
Query: 333 CINALAEN-SAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRA 391
INAL + S+HVP RDSKLTR+L++S GG +RT+LI+ PS + ET ST+ FG RA
Sbjct: 268 VINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRA 327
Query: 392 MKVENMLKIKEEFDYKSLSRRL 413
++N K+ E L + L
Sbjct: 328 KSIKNKAKVNAELSPAELKQML 349
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 200/363 (55%), Gaps = 47/363 (12%)
Query: 53 VRVAVRLRPRNAEET------VADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTE 106
++V R RP N E +A D V + S Y FD VF
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--------------SKPYAFDRVFQS 54
Query: 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMVRSM 165
S SQ++VY AK +V+ VL+GYNGT+ AYGQT +GKT T+ G+L D + GI+ R +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE--GMGIIPRIV 112
Query: 166 EDIL----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLV 221
+DI + Y ++Y++ I+DLLD + N+S+ ED K + G T
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRVPYVKGCTER 171
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ + + G+++R A T +N SSRSH+I +I+VK+ E+ LS
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG------ 225
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
KL +VDLAGSE++ K+G+EG +L+EAK+IN SLSALG I+ALAE S
Sbjct: 226 -------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS 272
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIK 401
+VP RDSK+TR+L+DS GG RT++++ PS + ET ST+LFGQRA ++N + +
Sbjct: 273 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
Query: 402 EEF 404
E
Sbjct: 333 VEL 335
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 200/363 (55%), Gaps = 35/363 (9%)
Query: 47 DGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTE 106
D ++V R RP N E + + Q E + K Y FD VF
Sbjct: 3 DPAECNIKVMCRFRPLNESEVNRGDKYV--AKFQGEDTVMIASK------PYAFDRVFQS 54
Query: 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMVRSM 165
S SQ++VY AK +V+ VL+GYNGT+ AYGQT +GK T+ G+L D + GI+ R +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPE--GMGIIPRIV 112
Query: 166 EDIL----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLV 221
+DI + Y ++Y++ I+DLLD + N+S+ ED K + G T
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRVPYVKGCTER 171
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ + + G+++R A T +N SSRSH+I +I+VK+ E+ LS
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG------ 225
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
KL +VDLAGSE++ K+G+EG +L+EAK+IN SLSALG I+ALAE S
Sbjct: 226 -------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS 272
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIK 401
+VP RDSK+TR+L+DS GG RT++++ PS + ET ST+LFGQRA ++N + +
Sbjct: 273 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
Query: 402 EEF 404
E
Sbjct: 333 VEL 335
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 195/353 (55%), Gaps = 47/353 (13%)
Query: 53 VRVAVRLRPRNAEET------VADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTE 106
++V R RP N E +A D V + S Y FD VF
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--------------SKPYAFDRVFQS 54
Query: 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMVRSM 165
S SQ++VY AK +V+ VL+GYNGT+ AYGQT +GKT T+ G+L D + GI+ R +
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE--GMGIIPRIV 112
Query: 166 EDIL----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLV 221
+DI + Y ++Y++ I+DLLD + N+S+ ED K + G T
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED-KNRVPYVKGCTER 171
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ + + G+++R A T +N SSRSH+I +I+VK+ E+ LS
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG------ 225
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
KL +VDLAGSE++ K+G+EG +L+EAK+IN SLSALG I+ALAE S
Sbjct: 226 -------------KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS 272
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394
+VP RDSK+TR+L+DS GG RT++++ PS + ET ST+LFGQRA +
Sbjct: 273 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 203/369 (55%), Gaps = 47/369 (12%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDS----DTYEFDEVFTESA 108
VRV VR RP N +E A D V++ +L ++ ++ + T+ FD V+ +A
Sbjct: 23 VRVVVRCRPMNGKEKAASYD--KVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNA 80
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMVRSMED 167
Q +Y+ +P+V+SVL G+NGT+ AYGQTGTGKT+T+ G GD + RG++ S +
Sbjct: 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE--KRGVIPNSFDH 138
Query: 168 I---LAXXXXXXXXXXXXYLQLYMETIQDLLDP-ANDNISIVEDPKTGDVSLPGATLVQI 223
I ++ YL++Y E I+DLL + + E P TG V +
Sbjct: 139 IFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTG---------VYV 189
Query: 224 RDQQSFT--------ELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275
+D SF ++ G +R T +N SSRSHAI +I ++ S VG + +
Sbjct: 190 KDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE--- 246
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
NH +R KL +VDLAGSER K+G++G L+EA INLSLSALG I+
Sbjct: 247 --NH-----------IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVIS 293
Query: 336 ALAEN-SAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394
AL + S H+P RDSKLTRLL+DS GG A+T ++ +GP+ + ET +T+ + RA +
Sbjct: 294 ALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI 353
Query: 395 ENMLKIKEE 403
+N ++ E+
Sbjct: 354 KNKPRVNED 362
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 196/366 (53%), Gaps = 42/366 (11%)
Query: 53 VRVAVRLRPRNAEETVADA---------------DFADCVELQTELKRLKLRKNNWDSDT 97
++V VR RP NA ET +A D + + T+ K++ T
Sbjct: 6 IKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVP--------RT 57
Query: 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSS 157
+ FD V+ +++ +++ KP++++VL+G+N T+ AYGQTG GKT+T+G +E +
Sbjct: 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAI 117
Query: 158 RGIMVRSMEDILAXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPG 217
+ I + YL+LY E I+DL+ N + + ED KT + + G
Sbjct: 118 PNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKED-KTRGIYVDG 175
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEI 277
++ ++ + L+ G A+R A T++N SSRSH+I M+ ++
Sbjct: 176 LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIE-------------- 221
Query: 278 NHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINAL 337
S +I+ +K ++R KL +VDLAGSER K+G+ G L E INLSLSALG I+ L
Sbjct: 222 --CSEVIE-NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL 278
Query: 338 AENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENM 397
E + H+P RDSKLTRLL+DS GG ++T + I P+ + ET ST+ + RA +++N
Sbjct: 279 VEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNK 338
Query: 398 LKIKEE 403
+I E+
Sbjct: 339 PRINED 344
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 191/360 (53%), Gaps = 39/360 (10%)
Query: 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNW----DSDTYEFDEV 103
G P RVRVAVRLRP + A A CV + L NW ++ Y+FD
Sbjct: 18 GPPARVRVAVRLRP--FVDGTAGASDPPCVR---GMDSCSLEIANWRNHQETLKYQFDAF 72
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
+ E ++Q+ +Y +P++ +L+G N +V+AYG TG GKT T+ LG + G++ R
Sbjct: 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM--LGSPEQP--GVIPR 128
Query: 164 SMEDIL-------AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLP 216
++ D+L A YL++Y E + DLLDPA+ ++ I ED + G++ +P
Sbjct: 129 ALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCR-GNILIP 187
Query: 217 GATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSE 276
G + I F +R T+LN SSRSHA+L++ V + RE
Sbjct: 188 GLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ----RER----- 238
Query: 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINA 336
+ P + R+ KL ++DLAGSE ++G++G L+E+ +IN SL LGK ++A
Sbjct: 239 -------LAPFR--QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDA 289
Query: 337 LAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVEN 396
L + VP RDSKLTRLL+DS GG+A + LI I P R +T S + F R+ +V N
Sbjct: 290 LNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVIN 349
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 192/369 (52%), Gaps = 35/369 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 138
Query: 164 SMEDILAXXXX--XXXXXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 139 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 254
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 255 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 300
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 301 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 396 NMLKIKEEF 404
N ++ ++
Sbjct: 361 NKPEVNQKL 369
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 189/368 (51%), Gaps = 35/368 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG-------RLGDEDTSSRGIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ E+ GI+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIPR 138
Query: 164 SMEDILAXXX--XXXXXXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 139 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 254
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 255 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 300
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 301 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 396 NMLKIKEE 403
N ++ ++
Sbjct: 361 NKPEVNQK 368
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 192/368 (52%), Gaps = 35/368 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 138
Query: 164 SMEDILAXXXXXXX--XXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 139 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 254
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 255 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 300
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 301 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 396 NMLKIKEE 403
N ++ ++
Sbjct: 361 NKPEVNQK 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 192/368 (52%), Gaps = 35/368 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 77
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 78 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 137
Query: 164 SMEDILAXXXXXXX--XXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 138 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 197
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 198 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 253
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 254 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 299
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 300 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 359
Query: 396 NMLKIKEE 403
N ++ ++
Sbjct: 360 NKPEVNQK 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 192/368 (52%), Gaps = 35/368 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPR 138
Query: 164 SMEDILAXXXXXXX--XXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 139 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 198
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 199 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 254
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 255 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 300
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 301 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 360
Query: 396 NMLKIKEE 403
N ++ ++
Sbjct: 361 NKPEVNQK 368
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 192/368 (52%), Gaps = 35/368 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 80
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 81 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 140
Query: 164 SMEDILAXXXXXXX--XXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 141 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 200
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 201 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 256
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 257 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 302
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 303 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 362
Query: 396 NMLKIKEE 403
N ++ ++
Sbjct: 363 NKPEVNQK 370
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 185/363 (50%), Gaps = 39/363 (10%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNW----DSDTYEFDEVFTESA 108
++V VR+RP N E A A VE K + +R TY FD VF S
Sbjct: 19 IQVVVRVRPFNLAERKASAH--SIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGD------EDTSSRGIM 161
Q VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ G E+ GI+
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGII 136
Query: 162 VRSMEDILAXXXXXXX--XXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSL 215
R++ I L++Y E + DLL+P++D + + +DP+ V +
Sbjct: 137 PRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 216 PGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDL 273
G + + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE-- 254
Query: 274 SSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKC 333
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+
Sbjct: 255 ----------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMK 393
I AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 VEN 396
+ N
Sbjct: 359 ILN 361
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 188/361 (52%), Gaps = 35/361 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 69
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 70 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 129
Query: 164 SMEDILAXXXX--XXXXXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 130 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 189
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 190 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 245
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 246 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 291
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 292 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 351
Query: 396 N 396
N
Sbjct: 352 N 352
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 188/361 (52%), Gaps = 35/361 (9%)
Query: 53 VRVAVRLRPRNAEETVADA-DFADCVELQTELK-RLKLRKNNWDSDTYEFDEVFTESASQ 110
++V VR RP N E A A +C ++ E+ R + TY FD VF S Q
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSR-----GIMVR 163
VY V P+++ V+ GYN T+ AYGQTGTGKTFT+ R +E+ + GI+ R
Sbjct: 64 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 123
Query: 164 SMEDILAXXX--XXXXXXXXXYLQLYMETIQDLLDPAND---NISIVEDPKTG-DVSLPG 217
++ I L++Y E + DLL+P++D + + +DP+ V + G
Sbjct: 124 TLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 183
Query: 218 ATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAIL--MIHVKRSVVGREEDLSS 275
+ + ++ ++L G A R A T +N SSRSH++ IH+K + + EE
Sbjct: 184 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE---- 239
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
LV+ KL +VDLAGSE I +SG+ EA +IN SL LG+ I
Sbjct: 240 --------------LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 285
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL E + HVP R+SKLTR+L+DS GG RTS+I TI P+ + ET ST+ + RA +
Sbjct: 286 ALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 345
Query: 396 N 396
N
Sbjct: 346 N 346
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 195/365 (53%), Gaps = 40/365 (10%)
Query: 45 GNDGVPGR----VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEF 100
G G+PG VRVA+R+RP +E + C++++ L R+ L ++ + F
Sbjct: 1 GAMGLPGAEEAPVRVALRVRPLLPKELLHGHQ--SCLQVEPGLGRVTLGRDRH----FGF 54
Query: 101 DEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR------LGDED 154
V E A Q+ VY+ +P++E+ +G+N TV AYGQTG+GKT+T+G L DE
Sbjct: 55 HVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDE- 113
Query: 155 TSSRGIMVRSMED---ILAXXXXXXXXXXXXYLQLYMETIQDLLD--PANDNISIVEDPK 209
+GI+ R+M + ++ YL++Y E +DLL+ A+ +I + ED +
Sbjct: 114 ---QGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDER 170
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
G+V L G V + LL G A R T LN SSRSH + + +++ GR
Sbjct: 171 -GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQR--GR 227
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S L +P+ + SK VDLAGSER+ K+GS G L+E+ IN SL A
Sbjct: 228 A---------PSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLA 278
Query: 330 LGKCINALAE---NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + +H+P RDSK+TR+L+DS GG A+T +I + PS ET +T+
Sbjct: 279 LGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN 338
Query: 387 FGQRA 391
+ RA
Sbjct: 339 YASRA 343
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 40/365 (10%)
Query: 45 GNDGVPGR----VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEF 100
G G+PG VRVA+R+RP +E + C++++ L R+ L ++ + F
Sbjct: 1 GAMGLPGAEEAPVRVALRVRPLLPKELLHGHQ--SCLQVEPGLGRVTLGRDRH----FGF 54
Query: 101 DEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR------LGDED 154
V E A Q+ VY+ +P++E+ +G+N TV AYGQTG+GKT+T+G L DE
Sbjct: 55 HVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDE- 113
Query: 155 TSSRGIMVRSMED---ILAXXXXXXXXXXXXYLQLYMETIQDLLD--PANDNISIVEDPK 209
+GI+ R+M + ++ YL++Y E +DLL+ A+ +I + ED +
Sbjct: 114 ---QGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDER 170
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
G+V L G V + LL G A R T LN SSRSH + + +K+ GR
Sbjct: 171 -GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQR--GR 227
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S L +P+ + SK VDLAGSER+ K+GS G + +E+ IN SL A
Sbjct: 228 A---------PSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLA 278
Query: 330 LGKCINALAE---NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + +++P RDSK+TR+L+DS GG A+T +I + PS ET +T+
Sbjct: 279 LGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLN 338
Query: 387 FGQRA 391
+ RA
Sbjct: 339 YASRA 343
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 39/369 (10%)
Query: 53 VRVAVRLRPRNAEE-TVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQK 111
++V VR+RP N+ E + A+ D V + + R L ++ + + FD F + Q
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL--DSKLTKKFTFDRSFGPESKQC 82
Query: 112 RVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDE---------DTSSRGIMV 162
VY VV P++E VL+GYN TV AYGQTGTGKT T+ +G+E D S GI+
Sbjct: 83 DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM--VGNETAELKSSWEDDSDIGIIP 140
Query: 163 RSMEDIL--AXXXXXXXXXXXXYLQLYMETIQDLLDPANDN-ISIVEDP-KTGDVSLPGA 218
R++ + YL+LY E + DLL + I I +D K G V + G
Sbjct: 141 RALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGL 200
Query: 219 TLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAI--LMIHVKRSVVGREEDLSSE 276
+ + + +LL G+ R A T +N +SSRSH + +++H++ + + E+
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED----- 255
Query: 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSE-GHMLEEAKSINLSLSALGKCIN 335
+++ KL +VDLAGSE + K+G+E G + E +IN SL LG+ I
Sbjct: 256 -------------MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVIT 302
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395
AL + + HVP R+SKLTRLL++S GG +TS+I TI P + ET ST+ + RA ++
Sbjct: 303 ALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
Query: 396 NMLKIKEEF 404
N ++ ++
Sbjct: 363 NKPEVNQKL 371
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 197/393 (50%), Gaps = 71/393 (18%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSD----TYEFDEVFTESA 108
++V R RP + +E A + + + +L ++ LR T+ FD V+ S+
Sbjct: 23 LKVVARCRPLSRKEEAAGHE--QILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASS 80
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDI 168
Q +Y+ +P+++SVL G+NGTV AYGQTGTGKT+T+ E RG++ + E I
Sbjct: 81 KQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVE-PELRGVIPNAFEHI 139
Query: 169 ---LAXXXXXXXXXXXXYLQLYMETIQDLL--DPANDNISIVEDPKTGDVSLPGATLVQI 223
++ YL++Y E I+DLL +P + + E+P+TG V I
Sbjct: 140 FTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGK-RLELKENPETG---------VYI 189
Query: 224 RDQQSFT--------ELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275
+D SF ++ G R +T +N SSRSHAI +I V+ S G S
Sbjct: 190 KDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERG-----SD 244
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSE---------------------- 313
+H +R KL +VDLAGSER +K+G
Sbjct: 245 GQDH-----------IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGG 293
Query: 314 --GHMLEEAKSINLSLSALGKCINALAEN-SAHVPLRDSKLTRLLRDSFGGTARTSLIVT 370
G +EA INLSLSALG I ALA N S H+P RDSKLTRLL+DS GG A+T ++ T
Sbjct: 294 AGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVAT 353
Query: 371 IGPSPRHRGETASTILFGQRAMKVENMLKIKEE 403
+GP+ E+ ST+ F RA ++N ++ E+
Sbjct: 354 LGPASHSYDESLSTLRFANRAKNIKNKPRVNED 386
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 189/367 (51%), Gaps = 52/367 (14%)
Query: 52 RVRVAVRLRPRNAEETVADADFADCVEL-----------QTELKRLK---------LRKN 91
++V VR+RP N +E A F V + Q E+ ++K
Sbjct: 11 HMKVVVRVRPENTKEKAAG--FHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQ 68
Query: 92 NWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLG 151
N D + FD VF E+++Q V+E KP++ S L+GYN TV+AYG TG GKT T+ LG
Sbjct: 69 NKDLK-FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM--LG 125
Query: 152 DEDTSSRGIMVRSMEDILA----XXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVED 207
D G+M +M + YL++Y E I+DLL + +++ ED
Sbjct: 126 SADEP--GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP-LAVRED 182
Query: 208 PKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVV 267
+ G V + G TL Q + + LL G +R T +N SSRSHA+ I++
Sbjct: 183 TQKG-VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL----- 236
Query: 268 GREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSL 327
R++D ++ IN VR +K+ ++DLAGSER SG++G E +IN SL
Sbjct: 237 -RQQDKTASINQN----------VRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSL 285
Query: 328 SALGKCINALAEN---SAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETAST 384
ALG INALA++ + H+P R+SKLTRLL+DS GG +T +I + PS +T +T
Sbjct: 286 LALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNT 345
Query: 385 ILFGQRA 391
+ + RA
Sbjct: 346 LKYANRA 352
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 211/402 (52%), Gaps = 44/402 (10%)
Query: 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESA 108
+ G++RV RLRP +E +A + + E L K++ + + +D VF +A
Sbjct: 3 MKGKIRVYCRLRPLCEKEIIAKE--RNAIRSVDEFTVEHLWKDD-KAKQHMYDRVFDGNA 59
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMED- 167
+Q V+E K +V+S +DGYN + AYGQTG+GKTFT+ G + S+ G+ R+M +
Sbjct: 60 TQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTI--YGAD--SNPGLTPRAMSEL 114
Query: 168 --ILAXXXXXXXXXXXXYL-QLYMETIQDLLDPANDN---ISIVEDPKTGDVSLPGATLV 221
I+ Y+ +LY +T+ DLL P + I +D K G VS+ T+V
Sbjct: 115 FRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSK-GMVSVENVTVV 173
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
I + +++ G R T +N +SSRSH I+ SV+ +L ++
Sbjct: 174 SISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIV------SVIIESTNLQTQA---- 223
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
+ + KL VDLAGSER+ KSGS G+ L+EA+SIN SLSALG I+AL+ +
Sbjct: 224 ---------IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN 274
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIK 401
H+P R+ KLT L+ DS GG A+T + V I P+ + ET +++ + R + N
Sbjct: 275 QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPS-- 332
Query: 402 EEFDYKSLSRRLEIQLDKLIVENERQ--QKAFDDEVERIHLE 441
K++S + +L KL+ + Q +K D+E+E I E
Sbjct: 333 -----KNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 190/364 (52%), Gaps = 41/364 (11%)
Query: 43 YAGNDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSD---TYE 99
Y + + G++RV R+RP N +E+ ++ T + + ++ W D +
Sbjct: 5 YNTIEDMKGKIRVYCRIRPLNEKESSEREK-----QMLTTVDEFTV-EHPWKDDKRKQHI 58
Query: 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRG 159
+D VF ASQ ++E K +V+S +DGYN + AYGQTG+GKTFT+ G E S+ G
Sbjct: 59 YDRVFDMRASQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTI--YGHE--SNPG 113
Query: 160 IMVRSME---DILAXXXXXXXXXXXXYL-QLYMETIQDLLDPAND---NISIVEDPKTGD 212
+ R+ + +IL Y+ +LY +T+ DLL P + + I +D K G
Sbjct: 114 LTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSK-GM 172
Query: 213 VSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREED 272
V + T + I + +L G R + T +N ESSRSH IL SVV D
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLIL------SVVIESID 226
Query: 273 LSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGK 332
L ++ + KL VDLAGSER+ KSGS G+ L+EA+SIN SLSALG
Sbjct: 227 LQTQS-------------AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGD 273
Query: 333 CINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAM 392
I AL+ + H+P R+ KLT L+ DS GG A+T + V + P+ + ET +++L+ R
Sbjct: 274 VIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVR 333
Query: 393 KVEN 396
+ N
Sbjct: 334 TIVN 337
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 188/362 (51%), Gaps = 40/362 (11%)
Query: 45 GNDGVPGRVRVAVRLRPRN--AEETVADADFADCVELQTELKRLKLRKNNWDSD-TYEFD 101
G+ G +V VR++P + A E + D +++ + + NN +D +++ D
Sbjct: 18 GSMGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLD 77
Query: 102 EVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLG-DEDTSSRGI 160
V + ASQ VYE VAK VV LDGYNGT+M YGQTG GKT+T+ +G E+ RGI
Sbjct: 78 GVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM--MGATENYKHRGI 134
Query: 161 MVRSMEDI---LAXXXXXXXXXXXXYLQLYMETIQDLLD------PANDNISIVEDPKTG 211
+ R+++ + + YL++Y E++ DLL P+ ++IVE+P+
Sbjct: 135 LPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ-- 192
Query: 212 DVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRS--VVGR 269
V + G ++ ++ LL GE +R+ A+ +N SSRSH I I+++ +
Sbjct: 193 GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
E+ ++S+IN +VDLAGSER+ KSGSEG +L+EA IN SLS
Sbjct: 253 EKYITSKIN-------------------LVDLAGSERLGKSGSEGQVLKEATYINKSLSF 293
Query: 330 LGKCINALAENSA-HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
L + I AL + H+P R KLT L+DS GG L+ I ET S++ F
Sbjct: 294 LEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFA 353
Query: 389 QR 390
R
Sbjct: 354 SR 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 183/365 (50%), Gaps = 53/365 (14%)
Query: 48 GVPGRVRVAVRLRPRNAEE---------TVADADFADCVELQTELKRLKLRKNNWDSDTY 98
G G +RV R+RP E+ DAD + L + K + ++
Sbjct: 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPV----------SF 50
Query: 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSR 158
E D+VF+ ASQ+ V++ V + +V S +DG+N + AYGQTG GKT+T+ E T+
Sbjct: 51 ELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTM-----EGTAEN 104
Query: 159 -GIMVRSMEDILAXXXXXXX----XXXXXYLQLYMETIQDLL--DPAND-NISIVEDPKT 210
GI R+++ + + ++Y E ++DLL +P I + D +
Sbjct: 105 PGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPD-GS 163
Query: 211 GDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGRE 270
G + +PG T Q++ ++ +G +R T LN SSRSHA+L++ V+
Sbjct: 164 GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG------ 217
Query: 271 EDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSAL 330
+ S L KL +VDLAGSER+ KSG+EG L EA+ IN SLSAL
Sbjct: 218 -------------VDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSAL 264
Query: 331 GKCINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQR 390
G I AL HVP R+SKLT LL+DS G ++T ++V + P ++ ET ++ F +R
Sbjct: 265 GDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAER 324
Query: 391 AMKVE 395
VE
Sbjct: 325 VRSVE 329
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 52/386 (13%)
Query: 49 VPG-RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDT---YEFDEVF 104
+PG V+VAVR+RP N+ E D+ C+ +Q + +T + FD +
Sbjct: 17 MPGASVKVAVRVRPFNSREMSRDSK---CI-IQMSGSTTTIVNPKQPKETPKSFSFDYSY 72
Query: 105 --------TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTS 156
ASQK+VY + + +++ +GYN + AYGQTG GK++T+ +G ++
Sbjct: 73 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKD 130
Query: 157 SRGIMVRSMEDILA-----XXXXXXXXXXXXYLQLYMETIQDLLDPAND-NISIVEDPKT 210
+GI+ + ED+ + Y+++Y E ++DLL+P N N+ + E P
Sbjct: 131 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 190
Query: 211 GDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGRE 270
G + + + + +L+ G R A T +N SSRSHA+ I + E
Sbjct: 191 GPY-VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAE 249
Query: 271 EDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSAL 330
++++E + SK+ +VDLAGSER +G++G L+E +IN SL+ L
Sbjct: 250 TNITTE---------------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTL 294
Query: 331 GKCINALAE------------NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHR 378
GK I+ALAE + +P RDS LT LLR++ GG +RT+++ + P+ +
Sbjct: 295 GKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINY 354
Query: 379 GETASTILFGQRAMKVENMLKIKEEF 404
ET ST+ + RA ++ N + + E
Sbjct: 355 DETLSTLRYADRAKQIRNTVSVNLEL 380
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 179/366 (48%), Gaps = 46/366 (12%)
Query: 52 RVRVAVRLRPRNAEET------VADADFADCV--ELQTELKRLKLRKN----NWDSDTYE 99
+V+VAVR+RP N ET V D D + + T L + R +D +
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 100 FDEVFTES-ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSR 158
DE E A Q V++ + + ++++ DGYN + AYGQTG+GK++T+ D+
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQP---- 117
Query: 159 GIMVRSMEDILAXXXX-----XXXXXXXXYLQLYMETIQDLLDP--ANDNISIVEDPKTG 211
G++ R + Y+++Y E ++DLLDP + + + E G
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177
Query: 212 DVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREE 271
+ G + + + + L+ G R A T +N ESSRSHA+ I
Sbjct: 178 PY-VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKI----------- 225
Query: 272 DLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALG 331
+ H + +K + KL +VDLAGSER K+G+ G L+E +IN SL+ LG
Sbjct: 226 ----TLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLG 281
Query: 332 KCINALAENSA------HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTI 385
I+ALA+ SA VP RDS LT LL+DS GG ++T+++ T+ P+ + ET ST+
Sbjct: 282 LVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTL 341
Query: 386 LFGQRA 391
+ RA
Sbjct: 342 RYADRA 347
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 192/377 (50%), Gaps = 51/377 (13%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQ-----TELKRLKLRKNNWDSDTYEFDEVFTES 107
V+VAVR+RP N+ E D+ C+ +Q T + K K S ++++ S
Sbjct: 6 VKVAVRVRPFNSREMSRDSK---CI-IQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 108 ------ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
ASQK+VY + + +++ +GYN + AYGQTG GK++T+ +G ++ +GI+
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGII 119
Query: 162 VRSMEDILA-----XXXXXXXXXXXXYLQLYMETIQDLLDPAND-NISIVEDPKTGDVSL 215
+ ED+ + Y+++Y E ++DLL+P N N+ + E P G +
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-V 178
Query: 216 PGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275
+ + + +L+ G R A T +N SSRSHA+ I + E ++++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
E + SK+ +VDLAGSER +G++G L+E +IN SL+ LGK I+
Sbjct: 239 E---------------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 336 ALAE------------NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETAS 383
ALAE + +P RDS LT LLR++ GG +RT+++ + P+ + ET S
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 384 TILFGQRAMKVENMLKI 400
T+ + RA ++ N + +
Sbjct: 344 TLRYADRAKQIRNTVSV 360
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 189/377 (50%), Gaps = 51/377 (13%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDT---YEFDEVF----- 104
V+VAVR+RP N+ E D+ C+ +Q + +T + FD +
Sbjct: 6 VKVAVRVRPFNSREMSRDSK---CI-IQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 105 ---TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
ASQK+VY + + +++ +GYN + AYGQTG GK++T+ +G ++ +GI+
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGII 119
Query: 162 VRSMEDILA-----XXXXXXXXXXXXYLQLYMETIQDLLDPAND-NISIVEDPKTGDVSL 215
+ ED+ + Y+++Y E ++DLL+P N N+ + E P G +
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-V 178
Query: 216 PGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275
+ + + +L+ G R A T +N SSRSHA+ I + E ++++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
E + SK+ +VDLAGSER +G++G L+E +IN SL+ LGK I+
Sbjct: 239 E---------------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 336 ALAE------------NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETAS 383
ALAE + +P RDS LT LLR++ GG +RT+++ + P+ + ET S
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 384 TILFGQRAMKVENMLKI 400
T+ + RA ++ N + +
Sbjct: 344 TLRYADRAKQIRNTVSV 360
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 192/377 (50%), Gaps = 51/377 (13%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQ-----TELKRLKLRKNNWDSDTYEFDEVFTES 107
V+VAVR+RP N+ E D+ C+ +Q T + K K S ++++ S
Sbjct: 6 VKVAVRVRPFNSREMSRDSK---CI-IQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 108 ------ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
ASQK+VY + + +++ +GYN + AYGQTG GK++T+ +G ++ +GI+
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM--MGKQEKDQQGII 119
Query: 162 VRSMEDILA-----XXXXXXXXXXXXYLQLYMETIQDLLDPAND-NISIVEDPKTGDVSL 215
+ ED+ + Y+++Y E ++DLL+P N N+ + E P G +
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY-V 178
Query: 216 PGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275
+ + + +L+ G R A T +N SSRSHA+ I + E ++++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCIN 335
E + SK+ +VDLAGSER +G++G L+E +IN SL+ LGK I+
Sbjct: 239 E---------------KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 283
Query: 336 ALAE------------NSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETAS 383
ALAE + +P RDS LT LLR++ GG +RT+++ + P+ + ET S
Sbjct: 284 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 343
Query: 384 TILFGQRAMKVENMLKI 400
T+ + RA ++ N + +
Sbjct: 344 TLRYADRAKQIRNTVSV 360
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 43/364 (11%)
Query: 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNW------DSDTYEFDEVF 104
G V V VR+RP N+ E E E ++ + +N S ++ FD VF
Sbjct: 4 GAVAVCVRVRPLNSRE-----------ESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVF 52
Query: 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRS 164
+ + K VYE +A P+++S + GYNGT+ AYGQT +GKT+T+ +G ED G++ R+
Sbjct: 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM--MGSED--HLGVIPRA 108
Query: 165 MEDILAXXXXX---XXXXXXXYLQLYMETIQDLLDPAND-NISIVEDPKTGDVSLPGATL 220
+ DI Y+++Y ETI DLL I+ + +V + T
Sbjct: 109 IHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTE 168
Query: 221 VQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHA 280
+ + + + GE R TK+N SSRSH I + ++ RE+ S +
Sbjct: 169 EVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILE----SREKGEPSNCEGS 224
Query: 281 SHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN 340
V+ S L +VDLAGSER ++G+ G L+E +IN SL LG+ I L++
Sbjct: 225 ----------VKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG 274
Query: 341 --SAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENML 398
+ RDSKLTR+L++S GG A+T +I TI +P ET + + F A ++N
Sbjct: 275 QVGGFINYRDSKLTRILQNSLGGNAKTRIICTI--TPVSFDETLTALQFASTAKYMKNTP 332
Query: 399 KIKE 402
+ E
Sbjct: 333 YVNE 336
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 173/366 (47%), Gaps = 54/366 (14%)
Query: 51 GRVRVAVRLRPRNAEETVADADFADC-VELQTELK---RLKLRKNNWD--SDTYEFDEVF 104
G +RV R+RP E D + +E E K L + +N S ++FD +F
Sbjct: 5 GNIRVYCRVRPPLLNEP---QDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF 61
Query: 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRS 164
S + K ++E + + +V+S LDGYN + AYGQTG+GKT+T+ GD G++ +
Sbjct: 62 EPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD------GMIPMT 114
Query: 165 MEDILAXXXXXX-----XXXXXXYLQLYMETIQDLLD--PANDNISIVEDPKTGDV---- 213
+ I Y+++Y ETI DLL ++DNI + D + D+
Sbjct: 115 LSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDH 174
Query: 214 -----SLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVG 268
+ T +++ +L+ R A T+ N SSRSH++ M+H+ G
Sbjct: 175 EKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN----G 230
Query: 269 REEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLS 328
R + KL +VDLAGSERI+ S G L E ++IN SLS
Sbjct: 231 RNLHTGE---------------TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLS 275
Query: 329 ALGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTI 385
LG I AL A ++P R+SKLT LL+ S G ++T + V I P P H ET +++
Sbjct: 276 CLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSL 335
Query: 386 LFGQRA 391
F +
Sbjct: 336 RFASKV 341
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 173/363 (47%), Gaps = 65/363 (17%)
Query: 70 DADFADCVELQT----ELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESV 125
+ DFAD ++ E K K+ W +T DE + A+Q+ VY+ + + ++
Sbjct: 78 ETDFADARGARSRRVLEEKSFTFDKSFWSHNTE--DEHY---ATQEHVYDSLGEEFLDHN 132
Query: 126 LDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILAXXXXXXXXXXX---- 181
+GY+ + AYGQTG+GK++T+ +G D G++ R+ ED+
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTM--MGTPDQP--GLIPRTCEDLFQRIASAQDETPNISYN 188
Query: 182 ---XYLQLYMETIQDLLDPANDN-----ISIVEDPKTGDVSLPGATLVQIRDQQSFTELL 233
Y ++Y E ++DLL P N + + E P G + T V +R + +
Sbjct: 189 VKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPY-VKDLTEVPVRGLEEIIRWM 247
Query: 234 RWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRK 293
R G+ R A+TK+N SSRSHA+ I +K+ E D ++E R
Sbjct: 248 RIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTE---------------RS 292
Query: 294 SKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAH---------- 343
S++ +VDLAGSER + + G L E +IN SL+ LG+ I ALA+ +
Sbjct: 293 SRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKS 352
Query: 344 ------------VPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRA 391
VP RDS LT LL+DS GG ++T++I I SP ET ST+ + +A
Sbjct: 353 GRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACI--SPTDYDETLSTLRYADQA 410
Query: 392 MKV 394
++
Sbjct: 411 KRI 413
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 161/315 (51%), Gaps = 38/315 (12%)
Query: 91 NNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRL 150
NN+ + + FD++F S V+E +++ +++ LDG N V AYGQTG+GKTFT+
Sbjct: 425 NNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSH- 482
Query: 151 GDEDTSSRGIMVRSMEDIL-----AXXXXXXXXXXXXYLQLYMETIQDLLDP---ANDNI 202
+ G++ S++ I ++++Y E I DLL+P N
Sbjct: 483 -----PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKY 537
Query: 203 SIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHV 262
I D G ++ + + I+ + +L R A TK N SSRSH+I +I +
Sbjct: 538 EIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL 597
Query: 263 KRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKS 322
+ L+ E ++ + L ++DLAGSER++ S +EG L+E ++
Sbjct: 598 QGY-----NSLTKESSYGT--------------LNLIDLAGSERLNNSRAEGDRLKETQA 638
Query: 323 INLSLSALGKCINAL-AENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGET 381
IN SLS LG I++L ++ +HVP R+SKLT LL+ S GG ++T + V I P + ET
Sbjct: 639 INKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNET 698
Query: 382 ASTILFGQRAMKVEN 396
+++ F A KV N
Sbjct: 699 INSLRF---ATKVNN 710
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 181/365 (49%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV +R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 115
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 116 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD------GIIPS 168
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 169 TISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 228
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T V++ ++ +L+ R A+T N SSRSH+I +IH+
Sbjct: 229 TKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS------ 282
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGSERI+ S G L E ++IN SLSA
Sbjct: 283 ----GSNAKTGAH---------SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSA 329
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 330 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 389
Query: 387 FGQRA 391
F +
Sbjct: 390 FASKV 394
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 165/354 (46%), Gaps = 42/354 (11%)
Query: 52 RVRVAVRLRPRNAEET-VADADF-----ADCVELQTELKRLKLRKNNWDSDTYEFDEVFT 105
R+ V VR RP N +ET + D D D V + +++ L + ++ T+ FD F
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRY-LENQTFRFDYAFD 148
Query: 106 ESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR--LGDEDTSSRGIMVR 163
+SA + VY A+P+VE++ + T AYGQTG+GKT T+G G S+GI
Sbjct: 149 DSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYAL 208
Query: 164 SMEDIL-----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGA 218
+ D+ + ++Y + DLL+ + ++ED K V + G
Sbjct: 209 AARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-RKTKLRVLEDGKQ-QVQVVGL 266
Query: 219 TLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEIN 278
+++ + +L+ G + R + T N SSRSHA+ I ++R G+
Sbjct: 267 QEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK--GKLH------- 317
Query: 279 HASHLIKPSKPLVRKSKLVVVDLAGSER-IHKSGSEGHMLEEAKSINLSLSALGKCINAL 337
K ++DLAG+ER S ++ E IN SL AL +CI AL
Sbjct: 318 ---------------GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL 362
Query: 338 AENSAHVPLRDSKLTRLLRDSF-GGTARTSLIVTIGPSPRHRGETASTILFGQR 390
N H P R SKLT++LRDSF G +RT +I TI P T +T+ + R
Sbjct: 363 GRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANR 416
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 166/354 (46%), Gaps = 42/354 (11%)
Query: 52 RVRVAVRLRPRNAEETVA-DADF----ADCVELQTELKRLKLRKNNW-DSDTYEFDEVFT 105
R+ V VR RP N +E + D + C+ L E K LK+ + ++ + FD F
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPK-LKVDLTKYLENQAFCFDFAFD 110
Query: 106 ESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSRGIMVR 163
E+AS + VY A+P+V+++ +G T AYGQTG+GKT T+G G +S+GI
Sbjct: 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAM 170
Query: 164 SMEDIL-----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGA 218
+ D+ + ++Y + DLL+ + ++ED K V + G
Sbjct: 171 ASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQ-QVQVVGL 228
Query: 219 TLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEIN 278
+ +++ G A R + T N+ SSRSHA I ++ GR
Sbjct: 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--GRMH------- 279
Query: 279 HASHLIKPSKPLVRKSKLVVVDLAGSER-IHKSGSEGHMLEEAKSINLSLSALGKCINAL 337
K +VDLAG+ER S ++ E IN SL AL +CI AL
Sbjct: 280 ---------------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 324
Query: 338 AENSAHVPLRDSKLTRLLRDSF-GGTARTSLIVTIGPSPRHRGETASTILFGQR 390
+N AH P R+SKLT++LRDSF G +RT +I TI P T +T+ + R
Sbjct: 325 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADR 378
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 165/354 (46%), Gaps = 42/354 (11%)
Query: 52 RVRVAVRLRPRNAEETVA-DADF----ADCVELQTELKRLKLRKNNW-DSDTYEFDEVFT 105
R+ V VR RP N +E + D + C+ L E K LK+ + ++ + FD F
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPK-LKVDLTKYLENQAFCFDFAFD 130
Query: 106 ESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSRGIMVR 163
E+AS + VY A+P+V+++ +G T AYGQTG+GKT T+G G +S+GI
Sbjct: 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 190
Query: 164 SMEDIL-----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGA 218
+ D+ + ++Y + DLL+ + ++ED + V + G
Sbjct: 191 ASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-KAKLRVLEDSRQ-QVQVVGL 248
Query: 219 TLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEIN 278
+ +++ G A R + T N+ SSRSHA I ++ GR
Sbjct: 249 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--GRLH------- 299
Query: 279 HASHLIKPSKPLVRKSKLVVVDLAGSER-IHKSGSEGHMLEEAKSINLSLSALGKCINAL 337
K +VDLAG+ER S ++ E IN SL AL +CI AL
Sbjct: 300 ---------------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 338 AENSAHVPLRDSKLTRLLRDSF-GGTARTSLIVTIGPSPRHRGETASTILFGQR 390
+N AH P R+SKLT++LRDSF G +RT +I I P T +T+ + R
Sbjct: 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 398
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 178/365 (48%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 14 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 70
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 71 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPS 123
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 183
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T ++ ++ +L+ R A+T N SSRSH+I +IH+
Sbjct: 184 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS------ 237
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGSERI+ S G L E ++IN SLS
Sbjct: 238 ----GSNAKTGAH---------SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 284
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 285 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 344
Query: 387 FGQRA 391
F +
Sbjct: 345 FASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 178/365 (48%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 58
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 59 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPS 111
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 171
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T ++ ++ +L+ R A+T N SSRSH+I +IH+
Sbjct: 172 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS------ 225
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGSERI+ S G L E ++IN SLS
Sbjct: 226 ----GSNAKTGAH---------SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 272
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 273 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 332
Query: 387 FGQRA 391
F +
Sbjct: 333 FASKV 337
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 174/365 (47%), Gaps = 47/365 (12%)
Query: 51 GRVRVAVRLRPRNAEETVADADFADCVELQ-----TELKRLKLRKNNWDSDTYEFDEVFT 105
G +RV R+RP E D + +++Q + + + + N ++FD++F
Sbjct: 28 GNIRVYCRIRPPLPHED----DNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFD 83
Query: 106 ESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSM 165
+ + +++ V + +++S LDGYN + AYGQTG+GKT+T+ GD + + S
Sbjct: 84 QQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSW 142
Query: 166 EDILAXXXXXXXXXXXXYLQLYMETIQDLL---DPANDNIS--------IVEDPKTGDVS 214
D LA ++++Y E I DLL P+ +N I D +
Sbjct: 143 IDKLA-ARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTY 201
Query: 215 LPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLS 274
+ T + + + ++L+ R A+T N SSRSH+I +IH++ G E
Sbjct: 202 ITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQ 261
Query: 275 SEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCI 334
+N +VDLAGSER++ S G L E +SIN SLS LG I
Sbjct: 262 GILN-------------------LVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVI 302
Query: 335 NALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRA 391
+AL H+P R+SKLT LL+ S G+++T + V I P+ H ET +++ F A
Sbjct: 303 HALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRF---A 359
Query: 392 MKVEN 396
KV N
Sbjct: 360 SKVNN 364
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 59
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPS 112
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T ++ ++ +L+ R A+T N SSRSH+I +IH+
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS------ 226
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGS RI+ S G L E ++IN SLS
Sbjct: 227 ----GSNAKTGAH---------SYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSC 273
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 387 FGQRA 391
F +
Sbjct: 334 FASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 59
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPS 112
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T ++ ++ +L+ R A+T N SSRSH+I +IH+
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS------ 226
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGSERI+ S G L E ++I SLS
Sbjct: 227 ----GSNAKTGAH---------SYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSC 273
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 387 FGQRA 391
F +
Sbjct: 334 FASKV 338
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 42/353 (11%)
Query: 53 VRVAVRLRPRNAEETVA-DADF----ADCVELQTELKRLKLRKNNW-DSDTYEFDEVFTE 106
+ V VR RP N +E + D + C+ L E K LK+ + ++ + FD F E
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPK-LKVDLTKYLENQAFCFDFAFDE 59
Query: 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG--RLGDEDTSSRGIMVRS 164
+AS + VY A+P+V+++ +G T AYGQTG+GKT T+G G +S+GI +
Sbjct: 60 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 119
Query: 165 MEDILAXXXX-----XXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGAT 219
D+ + ++Y + DLL+ + ++ED + V + G
Sbjct: 120 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-KAKLRVLEDSRQ-QVQVVGLQ 177
Query: 220 LVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINH 279
+ +++ G A R + T N+ SSRSHA I ++ GR
Sbjct: 178 EYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--GRLH-------- 227
Query: 280 ASHLIKPSKPLVRKSKLVVVDLAGSER-IHKSGSEGHMLEEAKSINLSLSALGKCINALA 338
K +VDLAG+ER S ++ E IN SL AL +CI AL
Sbjct: 228 --------------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 273
Query: 339 ENSAHVPLRDSKLTRLLRDSF-GGTARTSLIVTIGPSPRHRGETASTILFGQR 390
+N AH P R+SKLT++LRDSF G +RT +I I P T +T+ + R
Sbjct: 274 QNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 326
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 53/365 (14%)
Query: 51 GRVRVAVRLRP-----RNAEETVADAD-FADCVELQT-ELKRLKLRKNNWDSDTYEFDEV 103
G +RV R+RP N++ ++ + + F D +Q+ E+ +++ N ++FD++
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ---NTAQVHEFKFDKI 59
Query: 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVR 163
F + + V++ V + +V+S LDGYN + AYGQTG+GKTFT+ GD GI+
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPS 112
Query: 164 SMEDILAXXXXXXX-----XXXXXYLQLYMETIQDLLDPANDNI---------SIVEDPK 209
++ I ++++Y E I DLL N+N I D +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 210 TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGR 269
T ++ T ++ ++ +L+ R A+T N SS SH+I +IH+
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLS------ 226
Query: 270 EEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSA 329
S +H L +VDLAGSERI+ S G L E ++IN SLS
Sbjct: 227 ----GSNAKTGAH---------SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 273
Query: 330 LGKCINALAENSA---HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTIL 386
LG I+AL + + H+P R+SKLT LL+ S G ++T + V I PS H ET +++
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 387 FGQRA 391
F +
Sbjct: 334 FASKV 338
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 165/347 (47%), Gaps = 38/347 (10%)
Query: 51 GRVRVAVRLRPR-NAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESA 108
G +RV R+RP +EE + E EL+ + + K+ + FD+VF +
Sbjct: 67 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDI 168
SQ ++E+V+ P+++S LDGYN + AYGQTG+GKT+T+ D S G++ R++ D+
Sbjct: 127 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTM----DGVPESVGVIPRTV-DL 180
Query: 169 LAXXXXXXXXXXXXY------LQLYMETIQDLLDPANDNISI-VEDPKTGDVSLPGATLV 221
L Y L++Y E + DLL ++ I + D+ + T
Sbjct: 181 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEE 240
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ D L+ + +R A+T N SSRSHA+ K ++GR HA
Sbjct: 241 TVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIGR---------HAE 287
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
K + + +VDLAGSE S + E K+IN SLS L I AL +
Sbjct: 288 ------KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQ 337
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
H+P R+SKLT LL S GG ++T + + + P E+ ++ F
Sbjct: 338 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 165/347 (47%), Gaps = 38/347 (10%)
Query: 51 GRVRVAVRLRPR-NAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESA 108
G +RV R+RP +EE + E EL+ + + K+ + FD+VF +
Sbjct: 53 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDI 168
SQ ++E+V+ P+++S LDGYN + AYGQTG+GKT+T+ D S G++ R++ D+
Sbjct: 113 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTM----DGVPESVGVIPRTV-DL 166
Query: 169 LAXXXXXXXXXXXXY------LQLYMETIQDLLDPANDNISI-VEDPKTGDVSLPGATLV 221
L Y L++Y E + DLL ++ I + D+ + T
Sbjct: 167 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEE 226
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ D L+ + +R A+T N SSRSHA+ K ++GR HA
Sbjct: 227 TVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIGR---------HAE 273
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
K + + +VDLAGSE S + E K+IN SLS L I AL +
Sbjct: 274 ------KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQ 323
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
H+P R+SKLT LL S GG ++T + + + P E+ ++ F
Sbjct: 324 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 35/308 (11%)
Query: 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSS 157
+ FD VF + Q V+E +A +V+S LDGY + AYGQTG+GKTFT+ D
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 158 RGIMVRSMEDILAXXXXXXXXX-----XXXYLQLYMETIQDLLDPANDNISIVE------ 206
G++ R++ + + Y+++Y ET++DLL E
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRA 203
Query: 207 DPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSV 266
P + ++++ A V + ++ LL +R A T N SSRSH++ + +
Sbjct: 204 GPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI---- 259
Query: 267 VGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEG----HMLEEAKS 322
S E H+S ++ PL +VDLAGSER+ + G L E ++
Sbjct: 260 -------SGE--HSSRGLQCGAPLS------LVDLAGSERLDPGLALGPGERERLRETQA 304
Query: 323 INLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETA 382
IN SLS LG I AL+ +HVP R+SKLT LL++S GG+A+ + V I P + E+
Sbjct: 305 INSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESL 364
Query: 383 STILFGQR 390
+++ F +
Sbjct: 365 NSLRFASK 372
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 38/347 (10%)
Query: 51 GRVRVAVRLRPR-NAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESA 108
G +RV R+RP +EE + E EL+ + + K+ + FD+VF +
Sbjct: 56 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDI 168
SQ ++E+V+ P+++S LDGYN + AYGQ+G+GKT+T+ D S G++ R++ D+
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTM----DGVPESVGVIPRTV-DL 169
Query: 169 LAXXXXXXXXXXXXY------LQLYMETIQDLLDPANDNISI-VEDPKTGDVSLPGATLV 221
L Y L++Y E + DLL ++ I + D+ + T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEE 229
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ D L+ + +R A+T N SSRSHA+ K ++GR HA
Sbjct: 230 TVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIGR---------HAE 276
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
K + + +VDLAGSE S + E K+IN SLS L I AL +
Sbjct: 277 ------KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQ 326
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
H+P R+SKLT LL S GG ++T + + + P E+ ++ F
Sbjct: 327 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 148/309 (47%), Gaps = 40/309 (12%)
Query: 94 DSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRL--G 151
D + + FD F + SQ +Y+ + P+V+ +L+G+ T +AYGQTGTGK++++G G
Sbjct: 59 DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPG 118
Query: 152 DEDTSSRGIMVRSMEDILAXXXXX------XXXXXXXYLQLYMETIQDLLDPANDNISIV 205
+ GI+ R++ DI ++++Y E DLL + ++ +V
Sbjct: 119 EILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-STPHMPMV 177
Query: 206 EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRS 265
LP + Q +L G +R T +N+ SSRSHAI+ IHVK
Sbjct: 178 AARCQRCTCLP------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK-- 229
Query: 266 VVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINL 325
S+ +H S++ +VDLAGSE + ++G EG +E +INL
Sbjct: 230 ---------SKTHH--------------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 326 SLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTI 385
L ++ K + ++A +P RDS LT +L+ S + + + I P ET ST+
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 386 LFGQRAMKV 394
FG A K+
Sbjct: 327 RFGTSAKKL 335
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 164/345 (47%), Gaps = 38/345 (11%)
Query: 53 VRVAVRLRPR-NAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESASQ 110
+RV R+RP +EE + E EL+ + + K+ + FD+VF +SQ
Sbjct: 61 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 120
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILA 170
++E+V+ P+++S LDGYN + AYGQTG+GKT+T+ D S G++ R++ D+L
Sbjct: 121 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTM----DGVPESVGVIPRTV-DLLF 174
Query: 171 XXXXXXXXXXXXY------LQLYMETIQDLLDPANDNISI-VEDPKTGDVSLPGATLVQI 223
Y L++Y E + DLL ++ I + D+ + T +
Sbjct: 175 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 234
Query: 224 RDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHL 283
D L+ + +R A+T N SSRSHA+ K ++GR HA
Sbjct: 235 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIGR---------HAE-- 279
Query: 284 IKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAH 343
K + + +VDLAGSE S + E K+IN SLS L I AL + H
Sbjct: 280 ----KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDH 331
Query: 344 VPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
+P R+SKLT LL S GG ++T + + + P E+ ++ F
Sbjct: 332 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 164/347 (47%), Gaps = 38/347 (10%)
Query: 51 GRVRVAVRLRPR-NAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESA 108
G +RV R+RP +EE + E EL+ + + K+ + FD+VF +
Sbjct: 56 GNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDI 168
SQ ++E+V+ P+++S LDGYN + AYGQTG+GKT+T+ D S G++ R++ D+
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTM----DGVPESVGVIPRTV-DL 169
Query: 169 LAXXXXXXXXXXXXY------LQLYMETIQDLLDPANDNISI-VEDPKTGDVSLPGATLV 221
L Y L++Y E + DLL ++ I + D+ + T
Sbjct: 170 LFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEE 229
Query: 222 QIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281
+ D L+ + +R A+T N SSRSHA+ K ++GR HA
Sbjct: 230 TVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAV----TKLELIGR---------HAE 276
Query: 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS 341
K + + +VDLAGSE S + E K+I SLS L I AL +
Sbjct: 277 ------KQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQ 326
Query: 342 AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388
H+P R+SKLT LL S GG ++T + + + P E+ ++ F
Sbjct: 327 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 40/306 (13%)
Query: 94 DSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRL--G 151
D + + FD F + SQ +Y+ + P+V+ +L+G+ T +AYGQTGTGK++++G G
Sbjct: 59 DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPG 118
Query: 152 DEDTSSRGIMVRSMEDILAXXXXX------XXXXXXXYLQLYMETIQDLLDPANDNISIV 205
+ GI+ R++ DI ++++Y E DLL + ++ +V
Sbjct: 119 EILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-STPHMPMV 177
Query: 206 EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRS 265
LP + Q +L G +R T +N+ SSRSHAI+ IHVK
Sbjct: 178 AARCQRCTCLP------LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK-- 229
Query: 266 VVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINL 325
S+ +H S++ +VDLAGSE + ++G EG +E +INL
Sbjct: 230 ---------SKTHH--------------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 326 SLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTI 385
L ++ K + ++A +P RDS LT +L+ S + + + I P ET ST+
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 386 LFGQRA 391
FG A
Sbjct: 327 RFGTSA 332
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 38/262 (14%)
Query: 53 VRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNN--WDSDTYEFDEVFTESASQ 110
++V R RP N E + F + + K + Y FD V + +Q
Sbjct: 8 IKVMCRFRPLNEAEILRGDKF---------IPKFKGEETVVIGQGKPYVFDRVLPPNTTQ 58
Query: 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL-GRLGDEDTSSRGIMVRSMEDIL 169
++VY AK +V+ VL+GYNGT+ AYGQT +GKT T+ G+L D GI+ R DI
Sbjct: 59 EQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL--HDPQLMGIIPRIAHDIF 116
Query: 170 ----AXXXXXXXXXXXXYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLVQIRD 225
+ Y ++Y++ I+DLLD + N+++ ED K + G T +
Sbjct: 117 DHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHED-KNRVPYVKGCTERFVSS 175
Query: 226 QQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIK 285
+ +++ G+A+R A T +N SSRSH+I +I++K+ V E+ LS
Sbjct: 176 PEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLS----------- 224
Query: 286 PSKPLVRKSKLVVVDLAGSERI 307
KL +VDLAGSE++
Sbjct: 225 --------GKLYLVDLAGSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 46/356 (12%)
Query: 53 VRVAVRLRPRN-AEETVADADFA----DCVELQTELKRLKLRKNNWDSDTYEF--DEVFT 105
++V VR RP + E+ D+D +C L + R K+ + + +EF D+VF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCT-LYIDEPRYKVDMTKY-IERHEFIVDKVFD 59
Query: 106 ESASQKRVYEVVAKPVVESVLDGY-NGTV---MAYGQTGTGKTFT-LGRLGDEDTSSRGI 160
++ VYE KP++ +D Y NG V AYGQTG+GKT+T LG + + GI
Sbjct: 60 DTVDNFTVYENTIKPLI---IDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGI 116
Query: 161 MVRSMEDILAXXXXXXXXXXX----XYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLP 216
+ DI + ++Y + DLL ++ +E+ K V
Sbjct: 117 FQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-KRKMVAALENGKKEVVVKD 175
Query: 217 GATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSE 276
L + ++ +++ ++ N++ N ESSRSHAIL I +K +
Sbjct: 176 LKILRVLTKEELILKMIDGVLLRKIGVNSQ-NDESSRSHAILNIDLK------------D 222
Query: 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLE-EAKSINLSLSALGKCIN 335
IN + L K+ +DLAGSER + S+ + + +IN SL AL +CI
Sbjct: 223 INKNTSL----------GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIR 272
Query: 336 ALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRA 391
A+ + H+P RDS+LT++LRD F G +++ +I I P+ +T +T+ + R
Sbjct: 273 AMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 320 AKSINLSLSALGKCINALAENS-AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHR 378
AK+IN SLSALG I+ALAE + HVP RDSK+TR+L+DS G RT++++ PS +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 379 GETASTILFGQRAMKVENMLKIKEEF 404
ET ST++FGQRA ++N + + E
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLEL 86
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 324 NLSLSALGKCINALAENS-AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETA 382
N SLSALG I+ALAE + HVP RDSK+TR+L+DS GG RT++++ PS + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 383 STILFGQRAMKVENMLKIKEEF 404
ST++FGQRA ++N + + E
Sbjct: 61 STLMFGQRAKTIKNTVSVNLEL 82
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 90 KNNWDSDTYEFDEVFTESASQKRVY-------EVVAKPVVESVLDGYNGTVMAYGQTGTG 142
+ N+D Y+FD++ + + V+ + + + +++G++ V+A Q+GTG
Sbjct: 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD--VLAQAQSGTG 63
Query: 143 KT--FTLGRLGDEDTSSRG 159
KT F++ L DTS +
Sbjct: 64 KTGTFSIAALQRIDTSVKA 82
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 102 EVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
E F + YEVV K +E++ YN + YG GTGKT L G+E RG
Sbjct: 11 ENFIVGEGNRLAYEVV-KEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYR 67
Query: 162 V 162
V
Sbjct: 68 V 68
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 90 KNNWDSDTYEFDEVFTESASQKRVY-------EVVAKPVVESVLDGYNGTVMAYGQTGTG 142
+ N+D Y+FD++ + + V+ + + + +++G++ V+A Q+GTG
Sbjct: 14 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD--VLAQAQSGTG 71
Query: 143 KT--FTLGRLGDEDTSSRG 159
KT F++ L DTS +
Sbjct: 72 KTGTFSIAALQRIDTSVKA 90
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 102 EVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
E F + YEVV K +E++ YN + YG GTGKT L G+E RG
Sbjct: 11 ENFIVGEGNRLAYEVV-KEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYR 67
Query: 162 V 162
V
Sbjct: 68 V 68
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 102 EVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIM 161
E F + YEVV K +E++ YN + YG GTGKT L G+E RG
Sbjct: 10 ENFIVGEGNRLAYEVV-KEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNE-AKKRGYR 66
Query: 162 V 162
V
Sbjct: 67 V 67
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 90 KNNWDSDTYEFDEVFTESASQKRVY-------EVVAKPVVESVLDGYNGTVMAYGQTGTG 142
+ N+D Y+FD+ + + V+ + + + +++G++ V+A Q+GTG
Sbjct: 13 QTNYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHD--VLAQAQSGTG 70
Query: 143 KT--FTLGRLGDEDTSSRG 159
KT F++ L DTS +
Sbjct: 71 KTGTFSIAALQRIDTSVKA 89
>pdb|3PAE|A Chain A, Crystal Structure Of The K84d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
pdb|3PAE|B Chain B, Crystal Structure Of The K84d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
Length = 245
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 406 YKSLSRRLEIQLDKLIVENERQQKAFDD-----EVERIHLEAQNRISEV-ERNFADALEK 459
Y+ L+RR ++L ++ E ++ F + +V+ L +I+ V E NFAD L
Sbjct: 103 YQELARRTGLEL----MQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAH 158
Query: 460 EKLKCQMEYMESVKKL 475
+L ++E E VKK+
Sbjct: 159 NRLPFKLETQEEVKKM 174
>pdb|3FV7|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa4-44 Inhibitor
pdb|3FYZ|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa4-17 Inhibitor
pdb|3FZC|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa3-53 Inhibitor
pdb|3G4P|A Chain A, Oxa-24 Beta-Lactamase At Ph 7.5
pdb|3MBZ|A Chain A, Oxa-24 Beta-Lactamase Complex Soaked With 10mm Sa4-17
Inhibitor For 15min
Length = 244
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 406 YKSLSRRLEIQLDKLIVENERQQKAFDD-----EVERIHLEAQNRISEV-ERNFADALEK 459
Y+ L+RR ++L ++ E ++ F + +V+ L +I+ V E NFAD L
Sbjct: 102 YQELARRTGLEL----MQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAH 157
Query: 460 EKLKCQMEYMESVKKL 475
+L ++E E VKK+
Sbjct: 158 NRLPFKLETQEEVKKM 173
>pdb|3PAG|A Chain A, Crystal Structure Of The V130d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
pdb|3PAG|B Chain B, Crystal Structure Of The V130d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
Length = 245
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 406 YKSLSRRLEIQLDKLIVENERQQKAFDD-----EVERIHLEAQNRISEV-ERNFADALEK 459
Y+ L+RR ++L ++ E ++ F + +V+ L +I+ V E NFAD L
Sbjct: 103 YQELARRTGLEL----MQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAH 158
Query: 460 EKLKCQMEYMESVKKL 475
+L ++E E VKK+
Sbjct: 159 NRLPFKLETQEEVKKM 174
>pdb|2JC7|A Chain A, The Crystal Structure Of The Carbapenemase Oxa-24 Reveals
New Insights Into The Mechanism Of Carbapenem-Hydrolysis
Length = 244
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 406 YKSLSRRLEIQLDKLIVENERQQKAFDD-----EVERIHLEAQNRISEV-ERNFADALEK 459
Y+ L+RR ++L ++ E ++ F + +V+ L +I+ V E NFAD L
Sbjct: 102 YQELARRTGLEL----MQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAH 157
Query: 460 EKLKCQMEYMESVKKL 475
+L ++E E VKK+
Sbjct: 158 NRLPFKLETQEEVKKM 173
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 90 KNNWDSDTYEFDEVFTESASQKRVY-------EVVAKPVVESVLDGYNGTVMAYGQTGTG 142
+ N+ Y+FD++ + + V+ + + + +++G++ V+A Q+GTG
Sbjct: 13 QTNYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHD--VLAQAQSGTG 70
Query: 143 KT--FTLGRLGDEDTSSRG 159
KT F++ L DTS +
Sbjct: 71 KTGTFSIAALQRIDTSVKA 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,224,817
Number of Sequences: 62578
Number of extensions: 456860
Number of successful extensions: 1613
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 84
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)