Query 043730
Match_columns 480
No_of_seqs 316 out of 2093
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 9.9E-95 2.1E-99 785.4 38.9 396 12-425 8-421 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 5.1E-94 1.1E-98 766.1 27.8 356 51-427 4-380 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 3.5E-93 7.6E-98 744.7 25.9 353 51-426 5-367 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 8E-90 1.7E-94 701.6 29.8 355 49-427 5-364 (607)
5 PLN03188 kinesin-12 family pro 100.0 4.4E-87 9.6E-92 731.9 37.8 353 47-428 94-466 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 5.8E-85 1.3E-89 707.5 29.4 357 50-432 5-369 (675)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.7E-84 1E-88 658.3 32.7 320 52-394 2-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.9E-83 6.4E-88 652.7 32.7 320 52-394 1-338 (338)
9 KOG0241 Kinesin-like protein [ 100.0 3.3E-83 7.2E-88 672.3 30.9 353 51-426 4-382 (1714)
10 cd01368 KISc_KIF23_like Kinesi 100.0 5.3E-81 1.1E-85 637.5 33.1 320 52-392 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8.5E-81 1.8E-85 639.4 34.2 329 51-401 1-356 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.2E-80 4.7E-85 635.8 34.6 334 51-402 2-351 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 2.8E-79 6E-84 622.8 34.4 324 51-394 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 4.8E-79 1E-83 618.1 31.9 310 52-392 2-322 (322)
15 cd01376 KISc_KID_like Kinesin 100.0 8.8E-79 1.9E-83 615.6 32.2 311 52-392 1-319 (319)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.7E-78 8.1E-83 613.1 33.9 319 51-394 2-325 (325)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 3.3E-78 7E-83 617.5 33.6 328 52-395 2-341 (341)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-77 6.6E-82 605.2 32.8 316 52-394 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.8E-77 8.1E-82 607.1 32.4 314 52-392 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 3.9E-76 8.4E-81 599.4 33.9 319 50-396 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1.3E-75 2.9E-80 632.2 23.1 326 48-400 311-646 (670)
22 smart00129 KISc Kinesin motor, 100.0 2.4E-73 5.2E-78 580.4 33.5 326 52-401 1-335 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 6.1E-74 1.3E-78 584.8 21.4 318 58-394 1-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 6.4E-72 1.4E-76 568.4 33.6 315 52-392 1-328 (328)
25 KOG0246 Kinesin-like protein [ 100.0 8.2E-73 1.8E-77 574.9 26.0 318 51-395 208-542 (676)
26 KOG0247 Kinesin-like protein [ 100.0 3.4E-71 7.4E-76 577.5 32.2 327 47-400 27-442 (809)
27 KOG0244 Kinesin-like protein [ 100.0 5.8E-70 1.3E-74 583.7 7.9 341 59-426 1-348 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-63 2.9E-68 536.1 30.2 318 50-402 21-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.6E-52 5.6E-57 391.0 18.1 179 113-373 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 5.1E-08 1.1E-12 106.0 -10.8 209 94-338 351-566 (568)
31 COG0556 UvrB Helicase subunit 95.1 0.045 9.7E-07 58.2 6.4 85 96-189 3-98 (663)
32 COG2804 PulE Type II secretory 94.4 0.082 1.8E-06 56.2 6.3 29 120-148 248-276 (500)
33 PF00308 Bac_DnaA: Bacterial d 94.2 0.03 6.4E-07 53.8 2.5 49 96-147 3-51 (219)
34 COG2805 PilT Tfp pilus assembl 94.2 0.024 5.3E-07 56.4 1.8 30 118-147 113-142 (353)
35 PRK06893 DNA replication initi 93.9 0.043 9.3E-07 53.1 2.9 46 96-147 11-56 (229)
36 PRK06620 hypothetical protein; 92.1 0.094 2E-06 50.2 2.3 48 96-147 11-61 (214)
37 PRK12377 putative replication 91.8 0.13 2.8E-06 50.4 3.0 50 97-148 70-119 (248)
38 PRK09087 hypothetical protein; 91.3 0.13 2.8E-06 49.7 2.4 46 96-147 16-61 (226)
39 PRK14086 dnaA chromosomal repl 91.1 0.13 2.8E-06 56.5 2.3 50 96-148 283-332 (617)
40 PRK06526 transposase; Provisio 90.8 0.16 3.4E-06 50.1 2.5 45 100-149 73-117 (254)
41 PRK08084 DNA replication initi 90.8 0.19 4.1E-06 48.8 3.0 46 96-147 17-62 (235)
42 PRK05642 DNA replication initi 90.7 0.18 3.9E-06 48.9 2.8 45 96-147 14-62 (234)
43 PRK08116 hypothetical protein; 90.7 0.15 3.3E-06 50.5 2.3 50 96-147 80-131 (268)
44 PRK07952 DNA replication prote 90.4 0.25 5.5E-06 48.3 3.5 50 96-147 67-116 (244)
45 PRK14088 dnaA chromosomal repl 90.0 0.22 4.7E-06 53.1 2.9 50 95-148 99-148 (440)
46 TIGR00362 DnaA chromosomal rep 89.7 0.26 5.5E-06 51.8 3.1 50 95-147 104-153 (405)
47 PRK06835 DNA replication prote 89.4 0.16 3.6E-06 51.8 1.4 35 111-147 166-200 (329)
48 PF05673 DUF815: Protein of un 89.4 0.099 2.1E-06 50.9 -0.3 125 97-258 23-155 (249)
49 TIGR02928 orc1/cdc6 family rep 89.4 0.31 6.7E-06 50.1 3.4 37 110-147 20-57 (365)
50 PRK00149 dnaA chromosomal repl 89.2 0.27 5.9E-06 52.4 2.9 50 95-147 116-165 (450)
51 PF04851 ResIII: Type III rest 88.8 0.22 4.8E-06 45.1 1.7 36 109-148 7-43 (184)
52 PRK00411 cdc6 cell division co 88.5 0.41 8.9E-06 49.8 3.6 38 109-147 34-72 (394)
53 TIGR03420 DnaA_homol_Hda DnaA 88.4 0.36 7.7E-06 46.0 2.8 46 96-147 10-55 (226)
54 COG1474 CDC6 Cdc6-related prot 88.2 0.48 1E-05 49.2 3.8 25 123-147 34-59 (366)
55 cd00009 AAA The AAA+ (ATPases 87.6 0.37 8E-06 41.3 2.2 26 122-147 11-36 (151)
56 PRK08903 DnaA regulatory inact 87.4 0.5 1.1E-05 45.3 3.2 47 96-147 13-59 (227)
57 PRK08939 primosomal protein Dn 87.4 0.37 8.1E-06 48.8 2.4 51 98-149 124-175 (306)
58 PRK08181 transposase; Validate 87.3 0.53 1.2E-05 46.7 3.4 44 100-148 80-124 (269)
59 PRK08727 hypothetical protein; 87.1 0.38 8.3E-06 46.5 2.2 44 96-147 14-58 (233)
60 KOG0239 Kinesin (KAR3 subfamil 87.1 0.93 2E-05 50.6 5.4 89 96-200 26-114 (670)
61 PRK14087 dnaA chromosomal repl 86.9 0.38 8.2E-06 51.4 2.2 48 97-147 111-158 (450)
62 PF13245 AAA_19: Part of AAA d 86.3 0.36 7.8E-06 38.3 1.3 25 122-147 3-27 (76)
63 COG0593 DnaA ATPase involved i 85.8 0.53 1.1E-05 49.3 2.5 50 95-147 81-130 (408)
64 COG1484 DnaC DNA replication p 85.6 0.69 1.5E-05 45.5 3.2 51 96-149 74-124 (254)
65 KOG2543 Origin recognition com 85.3 0.43 9.2E-06 49.2 1.5 39 130-188 30-68 (438)
66 cd00046 DEXDc DEAD-like helica 84.8 0.38 8.2E-06 40.7 0.8 15 133-147 3-17 (144)
67 TIGR02538 type_IV_pilB type IV 84.2 0.46 1E-05 52.2 1.3 27 121-147 307-333 (564)
68 PRK10436 hypothetical protein; 84.1 0.48 1E-05 50.7 1.3 26 122-147 210-235 (462)
69 COG5008 PilU Tfp pilus assembl 83.8 0.71 1.5E-05 45.4 2.2 52 96-147 83-144 (375)
70 TIGR02533 type_II_gspE general 83.8 0.54 1.2E-05 50.7 1.6 27 121-147 233-259 (486)
71 KOG0926 DEAH-box RNA helicase 83.6 0.74 1.6E-05 51.4 2.5 32 130-161 271-308 (1172)
72 PF01935 DUF87: Domain of unkn 83.5 0.43 9.4E-06 45.7 0.7 15 133-147 26-40 (229)
73 smart00053 DYNc Dynamin, GTPas 83.1 2.2 4.9E-05 41.6 5.5 16 132-147 28-43 (240)
74 PTZ00112 origin recognition co 83.1 1.9 4.1E-05 49.4 5.4 21 127-147 778-798 (1164)
75 cd01131 PilT Pilus retraction 82.7 0.51 1.1E-05 44.4 0.8 18 130-147 1-18 (198)
76 PF13401 AAA_22: AAA domain; P 82.7 0.39 8.4E-06 41.3 -0.0 18 130-147 4-21 (131)
77 TIGR02525 plasmid_TraJ plasmid 82.6 0.65 1.4E-05 48.3 1.6 19 129-147 148-166 (372)
78 TIGR01420 pilT_fam pilus retra 82.6 0.64 1.4E-05 47.8 1.5 27 121-147 113-139 (343)
79 PRK06921 hypothetical protein; 82.3 0.93 2E-05 44.9 2.5 29 119-147 103-134 (266)
80 PF00270 DEAD: DEAD/DEAH box h 82.1 0.73 1.6E-05 41.3 1.6 24 122-147 8-31 (169)
81 TIGR02524 dot_icm_DotB Dot/Icm 82.0 0.72 1.6E-05 47.8 1.6 20 128-147 132-151 (358)
82 PF00437 T2SE: Type II/IV secr 81.8 0.52 1.1E-05 46.5 0.5 18 130-147 127-144 (270)
83 smart00382 AAA ATPases associa 81.7 0.59 1.3E-05 39.5 0.8 17 131-147 3-19 (148)
84 PF13604 AAA_30: AAA domain; P 81.0 0.69 1.5E-05 43.5 1.0 27 121-147 9-35 (196)
85 PF12846 AAA_10: AAA-like doma 80.9 0.62 1.3E-05 45.9 0.7 18 130-147 1-18 (304)
86 cd01129 PulE-GspE PulE/GspE Th 80.8 0.87 1.9E-05 45.1 1.7 26 122-147 72-97 (264)
87 PF05970 PIF1: PIF1-like helic 80.6 1.1 2.3E-05 46.5 2.3 37 107-147 3-39 (364)
88 PRK09183 transposase/IS protei 79.7 1.3 2.9E-05 43.6 2.6 44 100-148 77-120 (259)
89 PF01695 IstB_IS21: IstB-like 79.5 1 2.2E-05 41.7 1.6 18 131-148 48-65 (178)
90 PRK12422 chromosomal replicati 79.4 1.5 3.2E-05 46.9 2.9 50 95-147 105-158 (445)
91 COG1201 Lhr Lhr-like helicases 78.8 2.9 6.4E-05 47.6 5.2 24 121-146 30-53 (814)
92 TIGR03015 pepcterm_ATPase puta 78.8 1.4 3E-05 43.1 2.4 24 124-147 37-60 (269)
93 KOG2129 Uncharacterized conser 77.9 28 0.00061 36.2 11.3 69 407-475 252-324 (552)
94 PRK13894 conjugal transfer ATP 77.6 1.1 2.4E-05 45.7 1.3 27 120-147 139-165 (319)
95 KOG0989 Replication factor C, 77.2 1.7 3.7E-05 43.7 2.4 27 121-147 47-74 (346)
96 TIGR02782 TrbB_P P-type conjug 76.8 0.94 2E-05 45.7 0.6 27 120-147 123-149 (299)
97 PF13191 AAA_16: AAA ATPase do 76.7 1.2 2.7E-05 40.4 1.3 26 122-147 16-41 (185)
98 PF00063 Myosin_head: Myosin h 76.4 3.6 7.9E-05 46.4 5.1 21 127-147 82-102 (689)
99 PF13479 AAA_24: AAA domain 76.2 1.2 2.6E-05 42.4 1.1 19 130-148 3-21 (213)
100 PF01637 Arch_ATPase: Archaeal 76.0 1.1 2.3E-05 42.2 0.7 28 120-147 10-37 (234)
101 TIGR01817 nifA Nif-specific re 75.8 2.3 4.9E-05 46.5 3.2 118 97-237 192-318 (534)
102 PRK03992 proteasome-activating 75.8 0.98 2.1E-05 47.3 0.4 51 97-147 127-182 (389)
103 TIGR01242 26Sp45 26S proteasom 75.7 1 2.2E-05 46.6 0.4 51 97-147 118-173 (364)
104 PRK10884 SH3 domain-containing 75.2 45 0.00099 31.7 11.4 36 403-438 88-123 (206)
105 PF00004 AAA: ATPase family as 75.2 1.2 2.5E-05 38.0 0.6 15 133-147 1-15 (132)
106 PF00448 SRP54: SRP54-type pro 75.1 1 2.2E-05 42.5 0.3 16 132-147 3-18 (196)
107 PF13086 AAA_11: AAA domain; P 74.4 1.7 3.6E-05 40.9 1.6 25 122-147 10-34 (236)
108 PTZ00361 26 proteosome regulat 74.3 3.2 6.9E-05 44.2 3.7 49 99-147 181-234 (438)
109 smart00487 DEXDc DEAD-like hel 74.2 1.7 3.8E-05 39.1 1.6 32 107-147 10-41 (201)
110 PRK15424 propionate catabolism 74.1 2.6 5.6E-05 46.1 3.1 123 97-240 215-353 (538)
111 KOG3859 Septins (P-loop GTPase 73.9 4.2 9.1E-05 40.3 4.1 27 121-147 32-59 (406)
112 cd01378 MYSc_type_I Myosin mot 73.8 13 0.00029 41.8 8.6 21 127-147 83-103 (674)
113 PF13207 AAA_17: AAA domain; P 73.7 1.2 2.7E-05 37.7 0.4 16 132-147 1-16 (121)
114 cd01382 MYSc_type_VI Myosin mo 73.6 14 0.00031 41.9 8.9 21 127-147 88-108 (717)
115 PRK12402 replication factor C 73.5 2.2 4.7E-05 43.2 2.2 41 99-147 13-53 (337)
116 PHA00729 NTP-binding motif con 73.4 2.4 5.1E-05 41.0 2.3 30 118-147 5-34 (226)
117 KOG2655 Septin family protein 73.1 8.3 0.00018 39.8 6.2 22 126-147 17-38 (366)
118 PLN00020 ribulose bisphosphate 72.5 2.9 6.4E-05 43.4 2.8 53 95-147 109-165 (413)
119 smart00242 MYSc Myosin. Large 72.4 8.9 0.00019 43.2 6.9 21 127-147 89-109 (677)
120 cd00124 MYSc Myosin motor doma 72.4 11 0.00024 42.5 7.6 27 121-147 76-103 (679)
121 PRK13900 type IV secretion sys 72.4 2 4.3E-05 44.0 1.6 27 120-147 151-177 (332)
122 KOG1029 Endocytic adaptor prot 72.0 37 0.0008 38.2 11.0 15 117-131 73-87 (1118)
123 PF02562 PhoH: PhoH-like prote 71.9 2.2 4.7E-05 40.6 1.7 19 129-147 18-36 (205)
124 PTZ00454 26S protease regulato 71.9 1.3 2.8E-05 46.6 0.1 51 97-147 141-196 (398)
125 PF00910 RNA_helicase: RNA hel 71.1 1.4 3.1E-05 37.0 0.2 15 133-147 1-15 (107)
126 TIGR00631 uvrb excinuclease AB 71.0 3.2 7E-05 46.5 3.0 46 98-148 2-47 (655)
127 cd01130 VirB11-like_ATPase Typ 70.6 2.2 4.7E-05 39.6 1.4 27 120-147 16-42 (186)
128 PRK13833 conjugal transfer pro 70.6 2 4.4E-05 43.8 1.2 25 121-147 136-161 (323)
129 PF00580 UvrD-helicase: UvrD/R 70.3 1.6 3.4E-05 43.2 0.4 19 129-147 12-30 (315)
130 cd01384 MYSc_type_XI Myosin mo 70.1 18 0.00039 40.7 8.6 21 127-147 85-105 (674)
131 PF06309 Torsin: Torsin; Inte 70.0 2.6 5.6E-05 36.9 1.6 16 132-147 55-70 (127)
132 PF01580 FtsK_SpoIIIE: FtsK/Sp 69.8 1.6 3.4E-05 41.0 0.2 16 132-147 40-55 (205)
133 PRK12723 flagellar biosynthesi 69.7 4 8.6E-05 42.7 3.2 18 130-147 174-191 (388)
134 PHA02544 44 clamp loader, smal 69.5 2.9 6.3E-05 42.0 2.1 21 127-147 39-60 (316)
135 PF05496 RuvB_N: Holliday junc 69.3 5 0.00011 38.8 3.5 43 104-147 23-67 (233)
136 COG4962 CpaF Flp pilus assembl 69.2 2.5 5.4E-05 43.2 1.5 26 121-147 165-190 (355)
137 PRK11608 pspF phage shock prot 68.9 3.8 8.2E-05 41.8 2.8 115 100-237 5-128 (326)
138 cd00268 DEADc DEAD-box helicas 67.9 3.2 6.9E-05 38.6 1.8 24 122-147 30-53 (203)
139 PF13671 AAA_33: AAA domain; P 67.8 2 4.2E-05 37.5 0.4 15 133-147 2-16 (143)
140 TIGR03752 conj_TIGR03752 integ 67.8 49 0.0011 35.3 10.6 31 410-440 75-105 (472)
141 cd01377 MYSc_type_II Myosin mo 67.5 19 0.00041 40.7 8.1 21 127-147 88-108 (693)
142 PRK13851 type IV secretion sys 67.4 2.2 4.9E-05 43.9 0.8 27 120-147 153-179 (344)
143 PRK10820 DNA-binding transcrip 66.9 4.3 9.3E-05 44.2 2.9 119 96-237 199-326 (520)
144 PTZ00424 helicase 45; Provisio 66.8 2.9 6.4E-05 43.4 1.5 25 121-147 58-82 (401)
145 PRK10536 hypothetical protein; 66.5 3.4 7.3E-05 40.8 1.7 42 96-147 50-91 (262)
146 PRK11776 ATP-dependent RNA hel 66.4 3.2 7E-05 44.2 1.8 24 121-146 34-57 (460)
147 PF07724 AAA_2: AAA domain (Cd 66.4 2.7 5.8E-05 38.7 1.0 17 131-147 4-20 (171)
148 COG1222 RPT1 ATP-dependent 26S 66.3 4.2 9.2E-05 41.8 2.4 80 99-178 149-246 (406)
149 COG1223 Predicted ATPase (AAA+ 66.2 2.6 5.6E-05 41.6 0.8 18 130-147 151-168 (368)
150 TIGR00635 ruvB Holliday juncti 66.1 3.3 7.2E-05 41.3 1.7 39 108-147 7-47 (305)
151 PRK05022 anaerobic nitric oxid 66.0 5.4 0.00012 43.3 3.4 116 99-237 185-309 (509)
152 TIGR03499 FlhF flagellar biosy 65.9 2.6 5.6E-05 42.1 0.8 16 132-147 196-211 (282)
153 PRK13764 ATPase; Provisional 65.8 2.9 6.3E-05 46.2 1.3 18 130-147 257-274 (602)
154 KOG0335 ATP-dependent RNA heli 65.7 3.5 7.6E-05 43.9 1.8 108 122-234 105-240 (482)
155 PRK06547 hypothetical protein; 65.7 4.3 9.4E-05 37.4 2.2 27 121-147 6-32 (172)
156 PRK13342 recombination factor 65.6 3.3 7.2E-05 43.6 1.6 38 109-147 16-53 (413)
157 CHL00081 chlI Mg-protoporyphyr 65.4 2.6 5.7E-05 43.5 0.8 44 96-147 12-55 (350)
158 PF07728 AAA_5: AAA domain (dy 64.6 2.2 4.8E-05 37.2 0.1 15 133-147 2-16 (139)
159 PF06414 Zeta_toxin: Zeta toxi 64.2 3 6.5E-05 39.1 0.9 20 128-147 13-32 (199)
160 COG1419 FlhF Flagellar GTP-bin 63.6 5.2 0.00011 41.8 2.6 37 111-147 180-220 (407)
161 PF13238 AAA_18: AAA domain; P 63.2 2.7 5.9E-05 35.5 0.4 15 133-147 1-15 (129)
162 PRK11192 ATP-dependent RNA hel 63.0 4 8.7E-05 43.1 1.7 24 121-146 31-54 (434)
163 PRK00409 recombination and DNA 62.6 68 0.0015 36.9 11.5 12 136-147 213-224 (782)
164 PF06048 DUF927: Domain of unk 62.4 5.5 0.00012 39.8 2.5 32 115-147 179-210 (286)
165 cd01380 MYSc_type_V Myosin mot 62.2 33 0.00071 38.8 8.8 21 127-147 83-103 (691)
166 PRK04837 ATP-dependent RNA hel 62.2 4.1 9E-05 42.9 1.6 25 121-147 38-62 (423)
167 TIGR02881 spore_V_K stage V sp 62.1 3.2 6.9E-05 40.8 0.7 18 130-147 42-59 (261)
168 PRK11331 5-methylcytosine-spec 62.0 4.4 9.6E-05 43.1 1.7 29 358-390 319-347 (459)
169 PRK14722 flhF flagellar biosyn 61.8 3.5 7.5E-05 42.9 0.9 18 130-147 137-154 (374)
170 COG1125 OpuBA ABC-type proline 61.5 2.6 5.7E-05 41.4 -0.0 13 135-147 32-44 (309)
171 KOG0804 Cytoplasmic Zn-finger 60.9 1.1E+02 0.0024 32.4 11.5 14 103-116 121-134 (493)
172 PRK10590 ATP-dependent RNA hel 60.7 5 0.00011 42.9 1.9 24 121-146 31-54 (456)
173 PF00158 Sigma54_activat: Sigm 60.7 1.6 3.6E-05 40.0 -1.5 96 127-240 19-124 (168)
174 PF03215 Rad17: Rad17 cell cyc 60.7 4.9 0.00011 43.8 1.8 30 118-147 31-62 (519)
175 PF13555 AAA_29: P-loop contai 60.4 3.6 7.9E-05 31.3 0.6 15 133-147 26-40 (62)
176 PRK04328 hypothetical protein; 60.2 12 0.00025 36.6 4.3 28 119-146 9-39 (249)
177 PF12004 DUF3498: Domain of un 59.9 3 6.4E-05 44.8 0.0 66 412-478 373-448 (495)
178 PHA02244 ATPase-like protein 59.7 7.4 0.00016 40.5 2.8 46 97-147 91-136 (383)
179 TIGR01241 FtsH_fam ATP-depende 59.6 4.3 9.3E-05 43.9 1.2 50 97-147 51-105 (495)
180 PF02456 Adeno_IVa2: Adenoviru 59.5 3.4 7.5E-05 41.6 0.4 15 133-147 90-104 (369)
181 KOG2373 Predicted mitochondria 59.4 7.2 0.00016 40.0 2.6 27 120-147 261-290 (514)
182 TIGR01069 mutS2 MutS2 family p 59.4 90 0.002 35.9 11.7 10 294-303 403-412 (771)
183 PRK15429 formate hydrogenlyase 59.4 6.8 0.00015 44.2 2.8 120 98-240 373-501 (686)
184 PF07798 DUF1640: Protein of u 59.3 1.3E+02 0.0029 27.6 11.0 13 434-446 88-100 (177)
185 PLN03025 replication factor C 59.1 6.2 0.00013 40.0 2.2 17 131-147 35-51 (319)
186 COG1219 ClpX ATP-dependent pro 58.8 4.4 9.5E-05 41.1 1.0 17 130-146 97-113 (408)
187 smart00488 DEXDc2 DEAD-like he 58.8 7.5 0.00016 38.9 2.7 38 104-147 7-44 (289)
188 smart00489 DEXDc3 DEAD-like he 58.8 7.5 0.00016 38.9 2.7 38 104-147 7-44 (289)
189 PRK11388 DNA-binding transcrip 58.7 8.5 0.00018 43.0 3.4 119 97-238 321-445 (638)
190 COG2256 MGS1 ATPase related to 58.4 5.6 0.00012 41.5 1.7 37 109-146 28-64 (436)
191 KOG0651 26S proteasome regulat 58.3 7.4 0.00016 39.4 2.4 84 93-176 124-225 (388)
192 COG3598 RepA RecA-family ATPas 58.1 8.2 0.00018 39.2 2.7 81 100-191 60-142 (402)
193 PRK10416 signal recognition pa 57.8 8.3 0.00018 39.2 2.9 18 130-147 114-131 (318)
194 PF10376 Mei5: Double-strand r 57.8 84 0.0018 30.3 9.5 51 417-467 136-186 (221)
195 TIGR01069 mutS2 MutS2 family p 57.7 96 0.0021 35.6 11.6 12 136-147 328-339 (771)
196 PRK00440 rfc replication facto 57.7 6.7 0.00015 39.2 2.2 21 127-147 35-55 (319)
197 KOG3032 Uncharacterized conser 57.6 68 0.0015 30.9 8.5 34 443-476 184-217 (264)
198 COG4096 HsdR Type I site-speci 57.6 8.2 0.00018 43.7 2.9 30 117-147 173-202 (875)
199 COG2433 Uncharacterized conser 57.6 1.1E+02 0.0023 33.8 11.0 16 158-173 163-178 (652)
200 PF10236 DAP3: Mitochondrial r 57.5 6.6 0.00014 39.7 2.1 24 124-147 17-40 (309)
201 TIGR01618 phage_P_loop phage n 57.4 4.4 9.5E-05 39.0 0.7 19 130-148 12-30 (220)
202 TIGR00348 hsdR type I site-spe 57.3 6.7 0.00014 44.1 2.2 30 118-148 247-281 (667)
203 cd01120 RecA-like_NTPases RecA 57.0 4.4 9.4E-05 35.5 0.6 15 133-147 2-16 (165)
204 PF05729 NACHT: NACHT domain 57.0 5 0.00011 35.5 1.0 16 132-147 2-17 (166)
205 PF07693 KAP_NTPase: KAP famil 56.8 7.6 0.00016 39.0 2.4 20 128-147 18-37 (325)
206 smart00763 AAA_PrkA PrkA AAA d 56.8 10 0.00022 39.2 3.3 43 100-147 49-95 (361)
207 PRK10780 periplasmic chaperone 56.6 1.4E+02 0.0029 27.2 10.4 34 405-438 40-73 (165)
208 TIGR02640 gas_vesic_GvpN gas v 56.2 7.8 0.00017 38.1 2.3 27 119-147 12-38 (262)
209 TIGR02237 recomb_radB DNA repa 56.2 6.4 0.00014 36.9 1.6 25 123-147 2-29 (209)
210 KOG0739 AAA+-type ATPase [Post 55.7 7 0.00015 39.3 1.8 80 99-178 131-227 (439)
211 cd01123 Rad51_DMC1_radA Rad51_ 55.6 7.4 0.00016 37.1 2.0 30 118-147 4-36 (235)
212 PF00735 Septin: Septin; Inte 55.3 3.5 7.7E-05 41.2 -0.3 21 127-147 1-21 (281)
213 COG3829 RocR Transcriptional r 55.0 8.1 0.00018 41.8 2.3 124 94-240 238-371 (560)
214 PRK11634 ATP-dependent RNA hel 54.7 6.5 0.00014 43.9 1.6 25 121-147 36-60 (629)
215 TIGR02902 spore_lonB ATP-depen 54.7 6.7 0.00015 42.8 1.7 42 98-147 62-103 (531)
216 PRK00771 signal recognition pa 54.5 14 0.0003 39.4 3.9 18 130-147 95-112 (437)
217 PRK11448 hsdR type I restricti 54.4 6.7 0.00015 46.7 1.7 27 121-148 425-451 (1123)
218 PRK00409 recombination and DNA 54.2 1E+02 0.0022 35.5 11.1 10 294-303 408-417 (782)
219 PF12775 AAA_7: P-loop contain 54.1 6.5 0.00014 39.0 1.4 42 100-147 9-50 (272)
220 PRK05580 primosome assembly pr 54.0 7.2 0.00016 44.0 1.8 40 101-147 140-179 (679)
221 TIGR03819 heli_sec_ATPase heli 53.9 5.5 0.00012 40.9 0.8 28 119-147 168-195 (340)
222 PRK00080 ruvB Holliday junctio 53.7 7.6 0.00016 39.5 1.8 17 131-147 52-68 (328)
223 KOG1029 Endocytic adaptor prot 53.6 1.1E+02 0.0024 34.7 10.5 10 471-480 452-461 (1118)
224 PRK04195 replication factor C 53.6 9.8 0.00021 41.0 2.7 29 119-147 27-56 (482)
225 PRK13341 recombination factor 53.4 7.4 0.00016 44.1 1.8 21 127-147 49-69 (725)
226 cd02021 GntK Gluconate kinase 53.4 5.5 0.00012 35.1 0.6 15 133-147 2-16 (150)
227 cd01850 CDC_Septin CDC/Septin. 53.1 6.6 0.00014 39.1 1.2 21 127-147 1-21 (276)
228 TIGR00614 recQ_fam ATP-depende 52.8 7.7 0.00017 41.6 1.7 25 121-147 19-43 (470)
229 COG1660 Predicted P-loop-conta 52.7 16 0.00034 36.1 3.7 38 132-169 3-45 (286)
230 PRK09270 nucleoside triphospha 52.3 12 0.00027 35.8 2.9 37 111-147 13-50 (229)
231 PRK04537 ATP-dependent RNA hel 52.3 7.9 0.00017 42.7 1.8 25 121-147 39-63 (572)
232 PF13173 AAA_14: AAA domain 52.1 6.4 0.00014 34.0 0.8 16 132-147 4-19 (128)
233 CHL00176 ftsH cell division pr 51.8 7.3 0.00016 43.5 1.4 17 131-147 217-233 (638)
234 TIGR02903 spore_lon_C ATP-depe 51.7 8.6 0.00019 42.8 1.9 42 98-147 151-192 (615)
235 PF10267 Tmemb_cc2: Predicted 51.7 1.4E+02 0.003 31.4 10.6 30 429-458 261-290 (395)
236 TIGR00376 DNA helicase, putati 51.7 8.1 0.00018 43.2 1.8 25 122-147 166-190 (637)
237 PRK14974 cell division protein 51.7 15 0.00033 37.7 3.6 18 130-147 140-157 (336)
238 TIGR01359 UMP_CMP_kin_fam UMP- 51.6 6.6 0.00014 35.9 0.9 15 133-147 2-16 (183)
239 TIGR02788 VirB11 P-type DNA tr 51.5 8.4 0.00018 38.9 1.7 28 119-147 134-161 (308)
240 PF13476 AAA_23: AAA domain; P 51.4 5.9 0.00013 36.2 0.5 17 131-147 20-36 (202)
241 PRK06067 flagellar accessory p 51.2 10 0.00022 36.4 2.1 30 118-147 10-42 (234)
242 KOG1853 LIS1-interacting prote 51.2 2E+02 0.0043 28.3 10.6 8 385-392 23-30 (333)
243 TIGR02655 circ_KaiC circadian 51.1 17 0.00037 39.2 4.1 28 120-147 8-38 (484)
244 PRK05703 flhF flagellar biosyn 51.1 6.5 0.00014 41.7 0.8 16 132-147 223-238 (424)
245 PF06156 DUF972: Protein of un 51.0 1.3E+02 0.0029 25.4 8.6 47 421-470 10-56 (107)
246 TIGR03752 conj_TIGR03752 integ 50.8 1.4E+02 0.003 32.0 10.5 19 411-429 69-87 (472)
247 TIGR01243 CDC48 AAA family ATP 50.6 7.5 0.00016 44.2 1.3 51 97-147 174-229 (733)
248 PRK07261 topology modulation p 50.6 6.9 0.00015 35.8 0.8 15 133-147 3-17 (171)
249 PRK00131 aroK shikimate kinase 50.5 7.4 0.00016 34.9 1.0 16 132-147 6-21 (175)
250 PRK10917 ATP-dependent DNA hel 50.3 12 0.00026 42.3 2.8 40 104-147 260-299 (681)
251 PRK11889 flhF flagellar biosyn 49.9 13 0.00029 39.0 2.9 17 131-147 242-258 (436)
252 PRK01297 ATP-dependent RNA hel 49.9 8.9 0.00019 41.1 1.6 26 120-147 116-141 (475)
253 KOG1803 DNA helicase [Replicat 49.6 6.8 0.00015 42.8 0.7 25 122-147 194-218 (649)
254 PRK09361 radB DNA repair and r 49.4 12 0.00025 35.7 2.2 30 118-147 8-40 (225)
255 PRK08118 topology modulation p 49.2 7.6 0.00016 35.5 0.9 15 133-147 4-18 (167)
256 cd01127 TrwB Bacterial conjuga 48.9 6.9 0.00015 41.2 0.6 18 130-147 42-59 (410)
257 cd01383 MYSc_type_VIII Myosin 48.9 14 0.00031 41.6 3.1 21 127-147 89-109 (677)
258 COG0606 Predicted ATPase with 48.1 7.1 0.00015 41.6 0.6 22 124-147 194-215 (490)
259 PRK06995 flhF flagellar biosyn 48.1 7.6 0.00016 41.8 0.8 17 131-147 257-273 (484)
260 PLN00206 DEAD-box ATP-dependen 48.1 12 0.00025 40.8 2.3 24 121-146 151-174 (518)
261 PHA02653 RNA helicase NPH-II; 47.9 13 0.00027 42.0 2.5 33 108-146 163-195 (675)
262 cd00464 SK Shikimate kinase (S 47.8 8 0.00017 34.0 0.8 16 132-147 1-16 (154)
263 cd01393 recA_like RecA is a b 47.6 12 0.00027 35.3 2.1 30 118-147 4-36 (226)
264 cd01385 MYSc_type_IX Myosin mo 47.4 14 0.00031 41.7 2.8 21 127-147 91-111 (692)
265 cd01381 MYSc_type_VII Myosin m 47.4 15 0.00032 41.4 3.0 21 127-147 83-103 (671)
266 cd01387 MYSc_type_XV Myosin mo 47.3 15 0.00032 41.5 2.9 21 127-147 84-104 (677)
267 TIGR02746 TraC-F-type type-IV 47.1 7.6 0.00016 44.5 0.6 18 130-147 430-447 (797)
268 KOG2077 JNK/SAPK-associated pr 47.0 2.8E+02 0.006 30.5 11.9 58 422-479 353-422 (832)
269 cd01126 TraG_VirD4 The TraG/Tr 47.0 9.7 0.00021 39.6 1.4 15 133-147 2-16 (384)
270 cd01428 ADK Adenylate kinase ( 46.8 8.7 0.00019 35.3 0.9 15 133-147 2-16 (194)
271 PHA02624 large T antigen; Prov 46.8 13 0.00028 41.1 2.3 27 121-147 420-448 (647)
272 KOG0953 Mitochondrial RNA heli 46.8 9.1 0.0002 41.5 1.1 43 132-174 193-237 (700)
273 CHL00181 cbbX CbbX; Provisiona 46.6 8.5 0.00018 38.6 0.8 15 133-147 62-76 (287)
274 KOG1547 Septin CDC10 and relat 46.5 17 0.00037 35.5 2.8 21 127-147 43-63 (336)
275 PF07888 CALCOCO1: Calcium bin 46.4 2.4E+02 0.0052 30.9 11.6 11 295-305 91-101 (546)
276 TIGR03744 traC_PFL_4706 conjug 46.2 7.9 0.00017 45.1 0.6 19 129-147 474-492 (893)
277 TIGR01313 therm_gnt_kin carboh 46.2 7.6 0.00016 34.8 0.4 15 133-147 1-15 (163)
278 TIGR02030 BchI-ChlI magnesium 46.1 11 0.00023 38.9 1.4 42 98-147 1-42 (337)
279 cd00820 PEPCK_HprK Phosphoenol 46.0 9.4 0.0002 32.4 0.9 16 132-147 17-32 (107)
280 TIGR03158 cas3_cyano CRISPR-as 45.9 12 0.00026 38.6 1.9 25 123-147 7-31 (357)
281 TIGR02322 phosphon_PhnN phosph 45.8 8.9 0.00019 34.9 0.8 16 132-147 3-18 (179)
282 TIGR02880 cbbX_cfxQ probable R 45.7 8.3 0.00018 38.5 0.6 16 132-147 60-75 (284)
283 KOG0354 DEAD-box like helicase 45.6 14 0.00029 41.7 2.2 24 120-146 69-92 (746)
284 PRK14961 DNA polymerase III su 45.5 14 0.0003 38.2 2.2 41 99-147 14-55 (363)
285 COG5019 CDC3 Septin family pro 45.1 11 0.00025 38.7 1.5 21 127-147 20-40 (373)
286 cd01394 radB RadB. The archaea 44.9 16 0.00034 34.5 2.3 28 120-147 6-36 (218)
287 KOG0729 26S proteasome regulat 44.4 11 0.00024 37.3 1.2 49 127-175 206-269 (435)
288 PF12774 AAA_6: Hydrolytic ATP 44.2 14 0.0003 35.8 1.9 14 134-147 36-49 (231)
289 PRK06217 hypothetical protein; 44.2 9.9 0.00021 35.0 0.8 15 133-147 4-18 (183)
290 TIGR03877 thermo_KaiC_1 KaiC d 44.1 31 0.00067 33.2 4.3 27 120-146 8-37 (237)
291 KOG1532 GTPase XAB1, interacts 44.0 17 0.00036 36.3 2.4 19 129-147 18-36 (366)
292 PHA01747 putative ATP-dependen 43.9 11 0.00025 39.0 1.3 30 118-147 178-207 (425)
293 COG0630 VirB11 Type IV secreto 43.9 9.1 0.0002 38.9 0.5 17 131-147 144-160 (312)
294 COG2433 Uncharacterized conser 43.6 2.8E+02 0.0061 30.7 11.5 15 411-425 432-446 (652)
295 KOG0727 26S proteasome regulat 43.6 15 0.00032 36.2 1.9 79 99-177 153-249 (408)
296 TIGR01613 primase_Cterm phage/ 43.3 11 0.00023 37.9 1.0 44 100-147 47-93 (304)
297 PRK14531 adenylate kinase; Pro 43.2 11 0.00023 34.8 0.9 16 132-147 4-19 (183)
298 cd01983 Fer4_NifH The Fer4_Nif 43.1 11 0.00023 29.7 0.7 15 133-147 2-16 (99)
299 cd02020 CMPK Cytidine monophos 43.0 11 0.00024 32.7 0.9 15 133-147 2-16 (147)
300 cd02025 PanK Pantothenate kina 42.8 8 0.00017 37.1 -0.0 12 136-147 5-16 (220)
301 TIGR00643 recG ATP-dependent D 42.8 18 0.00039 40.4 2.7 40 104-147 234-273 (630)
302 PRK14964 DNA polymerase III su 42.8 12 0.00027 40.3 1.4 41 99-147 11-52 (491)
303 PF02534 T4SS-DNA_transf: Type 42.8 17 0.00036 38.8 2.4 17 131-147 45-61 (469)
304 PRK14721 flhF flagellar biosyn 42.7 11 0.00023 40.0 0.9 18 130-147 191-208 (420)
305 TIGR01389 recQ ATP-dependent D 42.7 13 0.00029 41.0 1.7 26 120-147 20-45 (591)
306 PRK12726 flagellar biosynthesi 42.7 11 0.00023 39.5 0.8 17 131-147 207-223 (407)
307 TIGR01650 PD_CobS cobaltochela 42.7 11 0.00024 38.4 1.0 18 130-147 64-81 (327)
308 TIGR02329 propionate_PrpR prop 42.6 12 0.00026 40.9 1.2 45 97-147 208-252 (526)
309 PRK13729 conjugal transfer pil 42.5 1.2E+02 0.0026 32.5 8.6 11 327-337 13-23 (475)
310 COG1136 SalX ABC-type antimicr 42.4 8.6 0.00019 37.2 0.1 15 133-147 34-48 (226)
311 TIGR00064 ftsY signal recognit 42.3 12 0.00027 37.1 1.2 18 130-147 72-89 (272)
312 PF03668 ATP_bind_2: P-loop AT 42.3 14 0.00031 36.9 1.6 38 132-169 3-45 (284)
313 PF08477 Miro: Miro-like prote 42.3 10 0.00022 31.7 0.5 15 133-147 2-16 (119)
314 PRK06696 uridine kinase; Valid 42.2 19 0.00042 34.3 2.5 21 127-147 19-39 (223)
315 CHL00195 ycf46 Ycf46; Provisio 42.2 11 0.00023 40.8 0.8 17 131-147 260-276 (489)
316 PRK08233 hypothetical protein; 42.1 11 0.00024 34.1 0.8 15 133-147 6-20 (182)
317 cd01124 KaiC KaiC is a circadi 41.8 12 0.00025 34.2 0.9 15 133-147 2-16 (187)
318 TIGR00602 rad24 checkpoint pro 41.8 14 0.00031 41.2 1.7 16 132-147 112-127 (637)
319 PRK06851 hypothetical protein; 41.7 21 0.00045 37.1 2.8 27 121-147 21-47 (367)
320 TIGR01243 CDC48 AAA family ATP 41.7 12 0.00025 42.7 1.1 16 132-147 489-504 (733)
321 PRK14723 flhF flagellar biosyn 41.7 12 0.00025 42.6 1.0 17 131-147 186-202 (767)
322 TIGR03689 pup_AAA proteasome A 41.6 11 0.00023 41.0 0.7 16 132-147 218-233 (512)
323 TIGR00929 VirB4_CagE type IV s 41.5 7.7 0.00017 44.3 -0.5 18 130-147 434-451 (785)
324 cd02023 UMPK Uridine monophosp 41.4 11 0.00023 35.1 0.6 15 133-147 2-16 (198)
325 PF05957 DUF883: Bacterial pro 41.4 1.9E+02 0.0042 23.4 10.3 43 413-455 3-49 (94)
326 PRK11057 ATP-dependent DNA hel 41.3 14 0.00031 41.0 1.6 24 121-146 33-56 (607)
327 PF00430 ATP-synt_B: ATP synth 41.3 2.2E+02 0.0049 24.2 10.0 24 413-436 45-68 (132)
328 KOG2264 Exostosin EXT1L [Signa 41.0 2E+02 0.0043 31.5 9.8 9 298-306 6-14 (907)
329 PRK09174 F0F1 ATP synthase sub 40.9 3.2E+02 0.007 25.9 11.8 26 413-438 99-124 (204)
330 PF14282 FlxA: FlxA-like prote 40.6 2.2E+02 0.0047 24.0 8.4 50 406-455 17-69 (106)
331 PF00485 PRK: Phosphoribulokin 40.6 9.9 0.00022 35.4 0.2 15 133-147 2-16 (194)
332 KOG0652 26S proteasome regulat 40.5 13 0.00028 36.8 1.0 38 109-146 179-221 (424)
333 PRK13455 F0F1 ATP synthase sub 40.5 3E+02 0.0065 25.4 11.8 15 375-389 27-41 (184)
334 KOG0924 mRNA splicing factor A 40.3 15 0.00032 41.0 1.4 20 128-147 369-388 (1042)
335 PRK13767 ATP-dependent helicas 40.3 16 0.00034 42.6 1.8 24 122-147 41-64 (876)
336 TIGR01360 aden_kin_iso1 adenyl 40.2 13 0.00028 33.9 0.9 16 132-147 5-20 (188)
337 PF04548 AIG1: AIG1 family; I 40.2 13 0.00028 35.3 0.9 16 132-147 2-17 (212)
338 PF02367 UPF0079: Uncharacteri 40.1 19 0.00042 31.3 2.0 17 131-147 16-32 (123)
339 TIGR00231 small_GTP small GTP- 40.0 12 0.00025 32.0 0.6 15 133-147 4-18 (161)
340 PRK10865 protein disaggregatio 40.0 19 0.00042 41.7 2.5 36 110-146 573-614 (857)
341 PRK06569 F0F1 ATP synthase sub 39.9 2.9E+02 0.0063 25.1 11.6 29 413-441 56-84 (155)
342 PRK06305 DNA polymerase III su 39.9 16 0.00034 39.1 1.6 41 99-147 15-56 (451)
343 PRK14532 adenylate kinase; Pro 39.9 13 0.00028 34.2 0.9 16 132-147 2-17 (188)
344 PRK04040 adenylate kinase; Pro 39.8 12 0.00027 34.8 0.7 16 132-147 4-19 (188)
345 cd03274 ABC_SMC4_euk Eukaryoti 39.8 10 0.00022 36.1 0.1 16 132-147 27-42 (212)
346 COG4026 Uncharacterized protei 39.8 3.6E+02 0.0077 26.1 10.9 10 442-451 168-177 (290)
347 PRK06568 F0F1 ATP synthase sub 39.7 2.9E+02 0.0063 25.0 11.9 12 416-427 53-64 (154)
348 PF14662 CCDC155: Coiled-coil 39.7 3.3E+02 0.0071 25.6 10.6 33 408-440 36-74 (193)
349 PF10412 TrwB_AAD_bind: Type I 39.6 9.6 0.00021 39.8 -0.0 16 132-147 17-32 (386)
350 PRK13453 F0F1 ATP synthase sub 39.6 3E+02 0.0065 25.1 11.8 10 420-429 71-80 (173)
351 PRK14962 DNA polymerase III su 39.5 19 0.0004 38.9 2.1 41 99-147 12-53 (472)
352 cd01386 MYSc_type_XVIII Myosin 39.3 21 0.00046 40.8 2.6 21 127-147 83-103 (767)
353 PF09726 Macoilin: Transmembra 39.2 2.4E+02 0.0052 32.0 10.8 13 411-423 421-433 (697)
354 TIGR02173 cyt_kin_arch cytidyl 39.0 13 0.00029 33.2 0.8 16 132-147 2-17 (171)
355 COG0419 SbcC ATPase involved i 38.9 29 0.00064 40.5 3.8 17 131-147 26-42 (908)
356 cd01379 MYSc_type_III Myosin m 38.8 23 0.00049 39.8 2.7 21 127-147 83-103 (653)
357 TIGR02236 recomb_radA DNA repa 38.6 21 0.00046 35.9 2.3 30 118-147 80-112 (310)
358 TIGR03263 guanyl_kin guanylate 38.6 14 0.0003 33.6 0.8 16 132-147 3-18 (180)
359 PRK12724 flagellar biosynthesi 38.5 13 0.00029 39.3 0.8 17 131-147 224-240 (432)
360 PRK01172 ski2-like helicase; P 38.4 18 0.00039 40.7 1.9 30 107-146 24-53 (674)
361 PTZ00110 helicase; Provisional 38.4 15 0.00034 40.2 1.3 24 121-146 160-183 (545)
362 COG0464 SpoVK ATPases of the A 38.3 17 0.00036 39.2 1.6 51 97-147 238-293 (494)
363 TIGR03238 dnd_assoc_3 dnd syst 38.3 24 0.00051 38.0 2.6 26 123-148 19-50 (504)
364 PRK13873 conjugal transfer ATP 38.3 12 0.00026 43.1 0.5 16 132-147 443-458 (811)
365 COG1221 PspF Transcriptional r 38.2 28 0.0006 36.6 3.1 122 97-241 74-205 (403)
366 KOG0163 Myosin class VI heavy 38.0 3.9E+02 0.0086 30.5 11.6 15 159-173 427-441 (1259)
367 PRK00300 gmk guanylate kinase; 37.9 14 0.00031 34.4 0.8 17 131-147 6-22 (205)
368 smart00502 BBC B-Box C-termina 37.9 2.4E+02 0.0051 23.4 9.4 75 406-480 48-122 (127)
369 PRK11034 clpA ATP-dependent Cl 37.8 25 0.00053 40.2 2.8 18 130-147 488-505 (758)
370 PF04466 Terminase_3: Phage te 37.8 11 0.00023 39.5 0.0 15 133-147 5-19 (387)
371 TIGR02397 dnaX_nterm DNA polym 37.8 21 0.00046 36.2 2.2 35 109-147 18-53 (355)
372 PF14532 Sigma54_activ_2: Sigm 37.8 14 0.00029 32.4 0.6 27 209-235 69-95 (138)
373 PF10923 DUF2791: P-loop Domai 37.7 23 0.00049 37.5 2.4 36 111-147 31-66 (416)
374 COG0467 RAD55 RecA-superfamily 37.6 20 0.00044 34.9 1.9 26 122-147 12-40 (260)
375 PRK10780 periplasmic chaperone 37.6 2.6E+02 0.0057 25.3 9.1 8 416-423 58-65 (165)
376 PRK03839 putative kinase; Prov 37.5 14 0.00031 33.7 0.8 15 133-147 3-17 (180)
377 TIGR00554 panK_bact pantothena 37.5 25 0.00055 35.3 2.6 17 131-147 63-79 (290)
378 TIGR02974 phageshock_pspF psp 37.5 20 0.00044 36.6 1.9 35 206-240 90-124 (329)
379 TIGR03881 KaiC_arch_4 KaiC dom 37.4 23 0.00049 33.7 2.2 28 120-147 7-37 (229)
380 TIGR02688 conserved hypothetic 37.3 14 0.0003 39.2 0.7 25 123-149 204-228 (449)
381 PRK06762 hypothetical protein; 37.3 16 0.00034 32.8 1.0 16 132-147 4-19 (166)
382 TIGR03817 DECH_helic helicase/ 37.1 19 0.00041 41.1 1.8 25 121-147 44-68 (742)
383 PRK13889 conjugal transfer rel 37.1 18 0.00038 42.6 1.6 26 121-147 354-379 (988)
384 CHL00118 atpG ATP synthase CF0 37.0 3.1E+02 0.0067 24.6 11.8 8 419-426 74-81 (156)
385 COG3842 PotA ABC-type spermidi 37.0 11 0.00025 38.8 -0.0 13 135-147 36-48 (352)
386 PRK05416 glmZ(sRNA)-inactivati 36.9 19 0.00042 36.1 1.6 16 132-147 8-23 (288)
387 PF00931 NB-ARC: NB-ARC domain 36.9 24 0.00052 34.5 2.3 29 119-147 6-36 (287)
388 PRK11664 ATP-dependent RNA hel 36.9 21 0.00046 41.1 2.1 27 119-147 11-37 (812)
389 TIGR03117 cas_csf4 CRISPR-asso 36.9 21 0.00046 39.8 2.1 32 110-147 2-33 (636)
390 PRK10078 ribose 1,5-bisphospho 36.8 15 0.00032 33.9 0.8 16 132-147 4-19 (186)
391 TIGR02768 TraA_Ti Ti-type conj 36.8 18 0.00039 41.3 1.6 26 121-147 360-385 (744)
392 COG2607 Predicted ATPase (AAA+ 36.7 38 0.00082 33.3 3.5 65 103-194 62-127 (287)
393 KOG3859 Septins (P-loop GTPase 36.6 4.6E+02 0.01 26.5 11.1 10 345-354 297-306 (406)
394 cd02027 APSK Adenosine 5'-phos 36.4 15 0.00033 32.7 0.7 15 133-147 2-16 (149)
395 PRK14530 adenylate kinase; Pro 36.3 15 0.00033 34.7 0.8 16 132-147 5-20 (215)
396 KOG0340 ATP-dependent RNA heli 36.2 20 0.00043 36.9 1.6 26 120-147 36-61 (442)
397 PRK05342 clpX ATP-dependent pr 36.2 16 0.00035 38.6 1.0 18 130-147 108-125 (412)
398 PRK14729 miaA tRNA delta(2)-is 36.1 17 0.00037 36.7 1.1 16 132-147 6-21 (300)
399 PRK13853 type IV secretion sys 35.9 14 0.00031 42.3 0.6 18 130-147 426-443 (789)
400 TIGR00382 clpX endopeptidase C 35.8 16 0.00034 38.7 0.8 17 131-147 117-133 (413)
401 TIGR01351 adk adenylate kinase 35.8 16 0.00035 34.4 0.9 15 133-147 2-16 (210)
402 PRK13531 regulatory ATPase Rav 35.7 22 0.00048 38.3 1.9 28 118-147 29-56 (498)
403 PRK14527 adenylate kinase; Pro 35.7 18 0.00038 33.5 1.1 17 131-147 7-23 (191)
404 PF01926 MMR_HSR1: 50S ribosom 35.6 13 0.00028 31.1 0.1 15 133-147 2-16 (116)
405 PRK13721 conjugal transfer ATP 35.6 15 0.00032 42.6 0.7 18 130-147 449-466 (844)
406 PRK15483 type III restriction- 35.5 23 0.00049 41.4 2.1 10 138-147 67-76 (986)
407 KOG0163 Myosin class VI heavy 35.5 3E+02 0.0064 31.5 10.2 6 294-299 635-640 (1259)
408 PRK14970 DNA polymerase III su 35.5 24 0.00053 36.3 2.2 41 99-147 15-56 (367)
409 KOG0330 ATP-dependent RNA heli 35.4 23 0.0005 36.9 1.9 26 120-147 90-115 (476)
410 cd02019 NK Nucleoside/nucleoti 35.4 15 0.00033 28.0 0.5 15 133-147 2-16 (69)
411 PF05010 TACC: Transforming ac 35.4 4E+02 0.0087 25.4 11.3 74 406-479 42-134 (207)
412 cd03279 ABC_sbcCD SbcCD and ot 35.2 17 0.00037 34.4 0.9 18 130-147 28-45 (213)
413 TIGR01074 rep ATP-dependent DN 35.2 16 0.00035 40.9 0.9 18 130-147 14-31 (664)
414 PF01745 IPT: Isopentenyl tran 35.2 15 0.00032 35.3 0.5 15 133-147 4-18 (233)
415 KOG0971 Microtubule-associated 35.2 2.9E+02 0.0062 32.2 10.2 23 94-116 54-78 (1243)
416 TIGR01425 SRP54_euk signal rec 35.2 34 0.00073 36.4 3.2 18 130-147 100-117 (429)
417 PF03193 DUF258: Protein of un 35.1 20 0.00044 32.7 1.3 25 121-147 28-52 (161)
418 cd03240 ABC_Rad50 The catalyti 35.0 17 0.00036 34.3 0.8 16 132-147 24-39 (204)
419 PRK10689 transcription-repair 35.0 28 0.0006 41.8 2.7 39 104-146 599-637 (1147)
420 cd00071 GMPK Guanosine monopho 34.9 16 0.00034 32.1 0.6 15 133-147 2-16 (137)
421 PRK11545 gntK gluconate kinase 34.9 13 0.00027 33.8 -0.0 12 136-147 1-12 (163)
422 TIGR02639 ClpA ATP-dependent C 34.8 28 0.00061 39.7 2.7 36 110-146 459-500 (731)
423 TIGR00763 lon ATP-dependent pr 34.7 20 0.00043 41.1 1.5 16 132-147 349-364 (775)
424 PRK12727 flagellar biosynthesi 34.5 17 0.00037 39.7 0.8 17 131-147 351-367 (559)
425 COG0563 Adk Adenylate kinase a 34.5 18 0.0004 33.5 1.0 14 133-146 3-16 (178)
426 COG1122 CbiO ABC-type cobalt t 34.4 17 0.00037 35.3 0.8 17 131-147 31-47 (235)
427 COG2882 FliJ Flagellar biosynt 34.2 3.5E+02 0.0075 24.4 9.0 28 402-429 65-92 (148)
428 PHA02774 E1; Provisional 34.2 24 0.00052 38.9 1.9 26 122-147 424-451 (613)
429 KOG0745 Putative ATP-dependent 34.0 19 0.00042 38.1 1.1 15 132-146 228-242 (564)
430 KOG1514 Origin recognition com 33.9 29 0.00063 38.8 2.5 27 121-147 411-439 (767)
431 PRK04301 radA DNA repair and r 33.9 29 0.00063 35.1 2.4 30 118-147 87-119 (317)
432 PLN03137 ATP-dependent DNA hel 33.8 22 0.00047 42.2 1.6 26 119-146 466-491 (1195)
433 TIGR00235 udk uridine kinase. 33.6 17 0.00036 34.2 0.6 17 131-147 7-23 (207)
434 PRK13169 DNA replication intia 33.6 3E+02 0.0066 23.5 8.5 42 424-468 13-54 (110)
435 PF09755 DUF2046: Uncharacteri 33.5 4.7E+02 0.01 26.5 10.7 30 417-446 86-115 (310)
436 KOG2391 Vacuolar sorting prote 33.5 4.1E+02 0.0089 27.3 10.2 45 407-452 217-261 (365)
437 cd00983 recA RecA is a bacter 33.5 29 0.00063 35.5 2.3 32 116-147 37-72 (325)
438 PRK10923 glnG nitrogen regulat 33.4 40 0.00087 35.8 3.5 92 128-237 159-260 (469)
439 KOG0726 26S proteasome regulat 33.4 32 0.0007 34.6 2.5 47 132-178 221-280 (440)
440 TIGR00580 mfd transcription-re 33.3 28 0.00062 40.7 2.5 39 105-147 451-489 (926)
441 cd03272 ABC_SMC3_euk Eukaryoti 33.3 20 0.00042 34.5 1.0 16 132-147 25-40 (243)
442 PRK06231 F0F1 ATP synthase sub 33.3 4.2E+02 0.0092 25.0 11.9 6 421-426 102-107 (205)
443 PF13481 AAA_25: AAA domain; P 33.2 13 0.00028 34.2 -0.3 28 120-147 19-49 (193)
444 KOG0987 DNA helicase PIF1/RRM3 33.1 35 0.00076 37.4 3.0 35 108-147 120-154 (540)
445 PRK06731 flhF flagellar biosyn 33.1 19 0.0004 35.9 0.8 17 131-147 76-92 (270)
446 KOG0348 ATP-dependent RNA heli 33.1 27 0.00058 37.9 2.0 25 120-146 166-190 (708)
447 KOG3915 Transcription regulato 33.0 2.8E+02 0.0061 29.6 9.2 12 413-424 526-537 (641)
448 PRK00279 adk adenylate kinase; 33.0 19 0.00042 34.0 0.9 15 132-146 2-16 (215)
449 KOG0331 ATP-dependent RNA heli 32.9 52 0.0011 35.7 4.2 23 123-147 123-145 (519)
450 PF06745 KaiC: KaiC; InterPro 32.9 19 0.00041 34.2 0.8 28 120-147 6-36 (226)
451 TIGR02238 recomb_DMC1 meiotic 32.9 34 0.00074 34.7 2.7 31 117-147 80-113 (313)
452 KOG3647 Predicted coiled-coil 32.8 5E+02 0.011 25.8 10.6 58 330-391 55-116 (338)
453 KOG0995 Centromere-associated 32.8 3.3E+02 0.0071 29.9 10.0 29 156-184 155-183 (581)
454 PTZ00301 uridine kinase; Provi 32.8 15 0.00033 34.9 0.2 15 133-147 6-20 (210)
455 PRK09039 hypothetical protein; 32.7 4.2E+02 0.0092 27.2 10.7 49 410-459 139-187 (343)
456 PRK10867 signal recognition pa 32.7 23 0.00049 37.7 1.4 18 130-147 100-117 (433)
457 PRK14963 DNA polymerase III su 32.6 25 0.00054 38.2 1.8 40 100-147 13-53 (504)
458 PF00025 Arf: ADP-ribosylation 32.6 24 0.00051 32.2 1.4 27 121-147 4-31 (175)
459 PTZ00014 myosin-A; Provisional 32.4 34 0.00075 39.4 2.9 21 127-147 180-200 (821)
460 cd01853 Toc34_like Toc34-like 32.4 21 0.00045 35.0 1.0 40 105-147 9-48 (249)
461 cd03115 SRP The signal recogni 32.3 20 0.00043 32.5 0.8 15 133-147 3-17 (173)
462 PRK13891 conjugal transfer pro 32.3 17 0.00037 42.1 0.5 17 131-147 489-505 (852)
463 TIGR00390 hslU ATP-dependent p 32.2 19 0.00042 38.1 0.8 17 131-147 48-64 (441)
464 COG3839 MalK ABC-type sugar tr 32.2 18 0.0004 37.1 0.6 15 133-147 32-46 (338)
465 KOG0741 AAA+-type ATPase [Post 31.8 23 0.0005 38.4 1.3 15 132-146 258-272 (744)
466 TIGR03880 KaiC_arch_3 KaiC dom 31.7 31 0.00068 32.7 2.1 27 121-147 4-33 (224)
467 PRK13830 conjugal transfer pro 31.7 18 0.00039 41.8 0.5 19 129-147 455-473 (818)
468 PF10481 CENP-F_N: Cenp-F N-te 31.7 3.2E+02 0.007 27.2 8.9 16 410-425 20-35 (307)
469 PRK05057 aroK shikimate kinase 31.6 20 0.00044 32.7 0.8 17 131-147 5-21 (172)
470 TIGR02767 TraG-Ti Ti-type conj 31.6 21 0.00045 39.8 1.0 17 131-147 212-228 (623)
471 PLN02200 adenylate kinase fami 31.5 21 0.00046 34.5 0.9 17 131-147 44-60 (234)
472 PRK09354 recA recombinase A; P 31.5 33 0.0007 35.5 2.3 31 117-147 43-77 (349)
473 KOG4031 Vesicle coat protein c 31.5 3.8E+02 0.0082 25.5 9.0 47 418-464 109-159 (216)
474 PF11068 YlqD: YlqD protein; 31.5 3.6E+02 0.0079 23.7 10.0 66 414-479 15-83 (131)
475 PRK05480 uridine/cytidine kina 31.5 19 0.00042 33.7 0.6 17 131-147 7-23 (209)
476 TIGR00959 ffh signal recogniti 31.4 24 0.00052 37.5 1.3 18 130-147 99-116 (428)
477 TIGR03783 Bac_Flav_CT_G Bacter 31.4 19 0.0004 41.7 0.5 18 130-147 438-455 (829)
478 PF03938 OmpH: Outer membrane 31.3 2.4E+02 0.0051 25.0 7.7 15 413-427 48-62 (158)
479 PRK07003 DNA polymerase III su 31.3 29 0.00062 39.6 2.0 41 99-147 14-55 (830)
480 PF10234 Cluap1: Clusterin-ass 31.2 5.3E+02 0.011 25.6 10.5 44 411-454 193-246 (267)
481 PRK09825 idnK D-gluconate kina 31.2 21 0.00045 32.9 0.7 16 132-147 5-20 (176)
482 PLN03230 acetyl-coenzyme A car 31.1 1.1E+02 0.0023 32.4 6.0 58 381-439 54-111 (431)
483 TIGR03345 VI_ClpV1 type VI sec 31.0 39 0.00084 39.3 3.0 17 131-147 597-613 (852)
484 PLN03187 meiotic recombination 31.0 35 0.00077 35.1 2.5 31 117-147 110-143 (344)
485 KOG1534 Putative transcription 31.0 27 0.00059 33.5 1.5 16 132-147 5-20 (273)
486 COG3879 Uncharacterized protei 30.9 4.4E+02 0.0095 25.8 9.7 79 381-462 25-103 (247)
487 TIGR02759 TraD_Ftype type IV c 30.9 19 0.00042 39.6 0.6 15 133-147 179-193 (566)
488 PRK07352 F0F1 ATP synthase sub 30.9 4.1E+02 0.0089 24.2 11.8 73 406-479 41-113 (174)
489 PHA02530 pseT polynucleotide k 30.8 22 0.00048 35.3 1.0 14 132-145 4-17 (300)
490 TIGR02442 Cob-chelat-sub cobal 30.8 34 0.00074 38.2 2.5 39 98-144 1-39 (633)
491 PRK02496 adk adenylate kinase; 30.8 22 0.00048 32.5 0.9 13 133-145 4-16 (184)
492 PLN03229 acetyl-coenzyme A car 30.8 3.8E+02 0.0082 30.6 10.3 101 373-479 528-658 (762)
493 PF10267 Tmemb_cc2: Predicted 30.7 5.4E+02 0.012 27.1 11.1 69 410-479 221-292 (395)
494 KOG0735 AAA+-type ATPase [Post 30.7 22 0.00048 39.9 0.9 13 133-145 704-716 (952)
495 PRK06851 hypothetical protein; 30.6 28 0.00061 36.2 1.6 27 121-147 205-231 (367)
496 TIGR01447 recD exodeoxyribonuc 30.6 20 0.00043 39.7 0.6 18 130-147 160-177 (586)
497 cd00227 CPT Chloramphenicol (C 30.6 22 0.00048 32.4 0.8 13 133-145 5-17 (175)
498 PRK14528 adenylate kinase; Pro 30.6 23 0.00049 32.8 0.9 13 133-145 4-16 (186)
499 CHL00118 atpG ATP synthase CF0 30.5 4E+02 0.0086 23.8 11.7 73 406-479 44-116 (156)
500 TIGR00176 mobB molybdopterin-g 30.5 21 0.00045 32.2 0.6 15 133-147 2-16 (155)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.9e-95 Score=785.41 Aligned_cols=396 Identities=34% Similarity=0.510 Sum_probs=335.1
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcccC--CCCCCCCCCCCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEec
Q 043730 12 QKGNSKSSSFKSRPHPSPSLGSAIRR--SSSASYAGNDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLR 89 (480)
Q Consensus 12 ~~~~~~s~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~ 89 (480)
.|++..+.+++..|..+|..+...+. .|+.+.....+...+|+|+|||||++.+|....+ ..+|..+...+.+.++
T Consensus 8 ~r~~~~~~~~~~~p~~~~~~~~~~~~~s~s~~~~k~~~e~~~NIqVivRcRp~n~~E~~~~s--~~VVs~~~~~kEV~v~ 85 (1041)
T KOG0243|consen 8 SRSSIVQESPCRTPRETQRSNRDSSGPSNSNTSSKDHKEKEVNIQVIVRCRPRNDRERKSKS--SVVVSCDGIRKEVAVR 85 (1041)
T ss_pred CcccccccccCCCCCcCCCCccCCCCCCCCCcccCCCCCCCCceEEEEEeCCCCchhhhcCC--CeEEecCCCcceEEEe
Confidence 34444455555555444433332222 1333334455555799999999999999976554 4466666544445544
Q ss_pred CC---CCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccccc----CCCCCCCCcchhH
Q 043730 90 KN---NWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR----LGDEDTSSRGIMV 162 (480)
Q Consensus 90 ~~---~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g----~~~~~~~~~Gii~ 162 (480)
.. ..-.++|+||+||+|.++|.+||+.++.|+|+.|+.|||||||||||||+||||||.| .+.+.+.+.||||
T Consensus 86 ~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIP 165 (1041)
T KOG0243|consen 86 QTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIP 165 (1041)
T ss_pred cccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcch
Confidence 43 2246789999999999999999999999999999999999999999999999999977 2345667889999
Q ss_pred HHHHHHHhhcCCC--CccEEEEEEeEeechhcccCCCCCC---cceeeecC----CCCceecCCCeEEEecCHHHHHHHH
Q 043730 163 RSMEDILADVSLE--SDSVSVSYLQLYMETIQDLLDPAND---NISIVEDP----KTGDVSLPGATLVQIRDQQSFTELL 233 (480)
Q Consensus 163 r~~~~lf~~~~~~--~~~V~vS~~EIynE~v~DLL~~~~~---~l~i~e~~----~~g~~~v~gl~~~~v~s~~e~~~ll 233 (480)
|++.+||..+... .++|+|||+|+|||.|+|||++... .+.+.+++ ..|+|+|.|+.++.|.++.|++.+|
T Consensus 166 Ral~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klL 245 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLL 245 (1041)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHH
Confidence 9999999998765 4799999999999999999987643 35555555 6778999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCc
Q 043730 234 RWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSE 313 (480)
Q Consensus 234 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~ 313 (480)
.+|.+.|.+|+|.||..|||||+||+|+|....... .+...++.|||+||||||||.+.++|+.
T Consensus 246 ekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~----------------~geelvK~GKLNLVDLAGSENI~RSGA~ 309 (1041)
T KOG0243|consen 246 EKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP----------------EGEELVKIGKLNLVDLAGSENISRSGAR 309 (1041)
T ss_pred HhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC----------------cchhhHhhcccceeeccccccccccccc
Confidence 999999999999999999999999999997654322 1335678999999999999999999999
Q ss_pred cchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcc
Q 043730 314 GHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMK 393 (480)
Q Consensus 314 g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~ 393 (480)
+.|.+|+..||+||++||+||+||.++..|||||+|||||||||||||.+||+|||||||+..+++||++||.||.|||+
T Consensus 310 ~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKn 389 (1041)
T KOG0243|consen 310 NGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKN 389 (1041)
T ss_pred cchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHH
Q 043730 394 VENMLKIKEEFDYKSLSRRLEIQLDKLIVENE 425 (480)
Q Consensus 394 I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~ 425 (480)
|+|+|.+|.....+.+++.|-.|+++|+.++.
T Consensus 390 IkNKPevNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 390 IKNKPEVNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887753
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-94 Score=766.13 Aligned_cols=356 Identities=35% Similarity=0.547 Sum_probs=321.0
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCC-------CChHHHHhhhhhhhHH
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTES-------ASQKRVYEVVAKPVVE 123 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~-------~~Q~~vf~~~~~plv~ 123 (480)
..|+|+|||||++.+|...++ ..++.+.....++..+........|+||+.|+.. ++|..||+.++.++++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~--k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDA--KCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhccc--ceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 479999999999999987644 4456777766677766666666779999999543 7899999999999999
Q ss_pred HhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEeechhcccCC-C
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYMETIQDLLD-P 197 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIynE~v~DLL~-~ 197 (480)
++|+|||+||||||||||||||||+|. .++.++|||||+|++||.++... .++|.|||+|||||+|+|||+ |
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~--~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGF--QEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeecc--CCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 999999999999999999999999774 46678999999999999998764 347999999999999999998 4
Q ss_pred C-CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccc
Q 043730 198 A-NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSE 276 (480)
Q Consensus 198 ~-~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 276 (480)
. +.+++++|+|..| .||.+|+.+.|+|+.|+..+|..|++.|++|+|+||+.|||||+||+|.+.|.....+...
T Consensus 160 ~~kg~LRVREHP~lG-PYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l--- 235 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILG-PYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGL--- 235 (1221)
T ss_pred CCCCCceeeccCccC-hhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCC---
Confidence 3 4679999999998 8999999999999999999999999999999999999999999999999999876654322
Q ss_pred ccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC-------CCCCCCCC
Q 043730 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS-------AHVPLRDS 349 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~-------~~iPyRdS 349 (480)
...+.|||+|||||||||+..+|+.|+|++||.+|||||++||+||.||++.+ .+||||||
T Consensus 236 ------------~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDS 303 (1221)
T KOG0245|consen 236 ------------DSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDS 303 (1221)
T ss_pred ------------cceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHH
Confidence 34578999999999999999999999999999999999999999999998732 48999999
Q ss_pred cccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 043730 350 KLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENERQ 427 (480)
Q Consensus 350 kLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~~ 427 (480)
.|||||++.|||||||+|||+|||+..||+|||+|||||+|||+|+|.++||++++.+ ++++|++|+.+|+.-+..+
T Consensus 304 VLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 304 VLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred HHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999876 8899999999998876543
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-93 Score=744.71 Aligned_cols=353 Identities=42% Similarity=0.633 Sum_probs=317.7
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC----CCCCCceeecccCCCCCChHHHHhhhhhhhHHHhc
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN----NWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 126 (480)
.+|+|+||+||+.+.+..... ..++.+++....+.+.++ ....+.|+||.||+++++|++||+.++.|+|++|+
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELL--KSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cceeEEEeecCCCchhhhhhh--ccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 589999999999987765443 446666665555555432 23567899999999999999999999999999999
Q ss_pred cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC----ccEEEEEEeEeechhcccCCCCC-Cc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES----DSVSVSYLQLYMETIQDLLDPAN-DN 201 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~----~~V~vS~~EIynE~v~DLL~~~~-~~ 201 (480)
+|||+||||||||||||||||.|. ++..+|||||++.+||..|.... +.|+|||+|||||.|+|||++.. +.
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~ 159 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKG 159 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCC
Confidence 999999999999999999999875 37789999999999999998764 67999999999999999999987 58
Q ss_pred ceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccc
Q 043730 202 ISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281 (480)
Q Consensus 202 l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 281 (480)
+.++++++.| |||+|++++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++.....
T Consensus 160 l~lre~p~~G-v~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~------------ 226 (574)
T KOG4280|consen 160 LELREDPKCG-VYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSD------------ 226 (574)
T ss_pred ceeeEcCCCc-eEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccC------------
Confidence 9999999777 999999999999999999999999999999999999999999999999999833211
Q ss_pred cccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCC-CCCCCCCcccccccccCC
Q 043730 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSA-HVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 282 ~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~-~iPyRdSkLT~LL~dsLg 360 (480)
.+....+.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++. ||||||||||+||||+||
T Consensus 227 ----~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLG 302 (574)
T KOG4280|consen 227 ----GGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLG 302 (574)
T ss_pred ----CCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcC
Confidence 122456789999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENER 426 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~ 426 (480)
|||+|+|||||+|+..+++||++||+||+|||.|+|+|.+|+++. +.+.+.|+.++..|+.++..
T Consensus 303 GN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 303 GNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDP 367 (574)
T ss_pred CCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999887 45778899999999988765
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8e-90 Score=701.59 Aligned_cols=355 Identities=44% Similarity=0.662 Sum_probs=325.8
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccC
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDG 128 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 128 (480)
.+++|+|+||+||++..|...+..+..|.... ...+.+..+.|. +.|.||+||.|+++|++||+.++.|+|++||.|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~--~~~v~~~~~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENG--ENTVVLETTKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCC--cceEEEeccccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999999988777666665443 556677776677 999999999999999999999999999999999
Q ss_pred CceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC----ccEEEEEEeEeechhcccCCCCCCccee
Q 043730 129 YNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES----DSVSVSYLQLYMETIQDLLDPANDNISI 204 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~----~~V~vS~~EIynE~v~DLL~~~~~~l~i 204 (480)
||+||||||||||||||||.|.+. ++...||+||++.+||.+|.... +.|+|||||||+|+++|||+|.+.++.+
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv 160 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV 160 (607)
T ss_pred cceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence 999999999999999999988765 55677999999999999997653 4699999999999999999999999999
Q ss_pred eecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccccc
Q 043730 205 VEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLI 284 (480)
Q Consensus 205 ~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (480)
.+| +++.++|+|+++..|.++++++..++.|..+|+++.|.||.+|||||+||+|+|.|......
T Consensus 161 heD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~-------------- 225 (607)
T KOG0240|consen 161 HED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK-------------- 225 (607)
T ss_pred ecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch--------------
Confidence 999 66779999999999999999999999999999999999999999999999999999876542
Q ss_pred CCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCCCCCCCcccccccccCCCCc
Q 043730 285 KPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHVPLRDSKLTRLLRDSFGGTA 363 (480)
Q Consensus 285 ~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~iPyRdSkLT~LL~dsLgGns 363 (480)
....|+|+||||||||+..++|+.|.-+.|+++||+||++||+||+||+++ +.|||||||||||||||+|||||
T Consensus 226 -----~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNs 300 (607)
T KOG0240|consen 226 -----RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNS 300 (607)
T ss_pred -----hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCc
Confidence 457899999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 043730 364 RTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENERQ 427 (480)
Q Consensus 364 ~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~~ 427 (480)
+|.+|+|+||+..+..||.+||+|++||+.|+|.+.+|.+.+++.+.+.|+.+.+++....+.+
T Consensus 301 RTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~ 364 (607)
T KOG0240|consen 301 RTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEEL 364 (607)
T ss_pred ceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766554443
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.4e-87 Score=731.94 Aligned_cols=353 Identities=35% Similarity=0.536 Sum_probs=298.8
Q ss_pred CCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhc
Q 043730 47 DGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 47 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 126 (480)
....++|+|+|||||++..|. +. ..++.+.. ..+.+ ..+.|.||+||+++++|++||+.++.|+|++++
T Consensus 94 ~~~ds~VkV~VRVRPl~~~E~--g~--~iV~~~s~--dsl~I-----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svL 162 (1320)
T PLN03188 94 GVSDSGVKVIVRMKPLNKGEE--GE--MIVQKMSN--DSLTI-----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCL 162 (1320)
T ss_pred cCCCCCeEEEEEcCCCCCccC--CC--eeEEEcCC--CeEEE-----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 334579999999999998763 11 11222222 22332 246899999999999999999999999999999
Q ss_pred cCCceeEEecCCCCCCcccccccCCCC------CCCCcchhHHHHHHHHhhcCCC---------CccEEEEEEeEeechh
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDE------DTSSRGIMVRSMEDILADVSLE---------SDSVSVSYLQLYMETI 191 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~------~~~~~Gii~r~~~~lf~~~~~~---------~~~V~vS~~EIynE~v 191 (480)
+|||+||||||||||||||||+|...+ ...++|||||++.+||..+... .+.|+|||+|||||+|
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI 242 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQI 242 (1320)
T ss_pred cCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcc
Confidence 999999999999999999999885322 2357899999999999987532 3579999999999999
Q ss_pred cccCCCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcc
Q 043730 192 QDLLDPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREE 271 (480)
Q Consensus 192 ~DLL~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~ 271 (480)
||||++....+.+++++..| ++|.|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+......
T Consensus 243 ~DLLsp~~k~L~IRED~kgG-v~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~- 320 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSG-VYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA- 320 (1320)
T ss_pred eeccccccCCceEEEcCCCC-eEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccC-
Confidence 99999988899999998755 9999999999999999999999999999999999999999999999999986543211
Q ss_pred cccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh-----CCCCCCC
Q 043730 272 DLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE-----NSAHVPL 346 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~-----~~~~iPy 346 (480)
.+......|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|+. +..||||
T Consensus 321 --------------dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPY 386 (1320)
T PLN03188 321 --------------DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPY 386 (1320)
T ss_pred --------------CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCC
Confidence 112335689999999999999999999999999999999999999999999985 3479999
Q ss_pred CCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 043730 347 RDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENER 426 (480)
Q Consensus 347 RdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~ 426 (480)
||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+|.+.+|...... +..|+..+.+|+.|+.+
T Consensus 387 RDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~--vn~LrelIr~Lk~EL~r 464 (1320)
T PLN03188 387 RDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD--VNFLREVIRQLRDELQR 464 (1320)
T ss_pred CcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhh--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999865322 23344455555555544
Q ss_pred HH
Q 043730 427 QQ 428 (480)
Q Consensus 427 ~~ 428 (480)
..
T Consensus 465 LK 466 (1320)
T PLN03188 465 VK 466 (1320)
T ss_pred HH
Confidence 33
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-85 Score=707.48 Aligned_cols=357 Identities=41% Similarity=0.624 Sum_probs=310.6
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCC---CCceeecccCCCCCChHHHHhhhhhhhHHHhc
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWD---SDTYEFDEVFTESASQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 126 (480)
..+|.|+|||||+++.+...+ +...+.................. ...|.||+||+++++|++||+..++|+|.+++
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARG-DRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred cceeEEEEEeCCCCccccccC-CccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 358999999999998843222 22222222222222221111111 47899999999999999999999999999999
Q ss_pred cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC---ccEEEEEEeEeechhcccCCCCCCcce
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES---DSVSVSYLQLYMETIQDLLDPANDNIS 203 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~---~~V~vS~~EIynE~v~DLL~~~~~~l~ 203 (480)
+|||+||||||||||||||||.| ...+|||||+++.+||+.|.... +.|.|||+|||||.|+|||++....+.
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ 159 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLR 159 (675)
T ss_pred cCcccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCce
Confidence 99999999999999999999965 33468999999999999987754 689999999999999999999999999
Q ss_pred eeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccc
Q 043730 204 IVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHL 283 (480)
Q Consensus 204 i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (480)
+++|+..| ++|.||++..|.|+++++++|..|+++|+++.|.+|..|||||+||+|.|.+......
T Consensus 160 irED~~~g-i~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~------------- 225 (675)
T KOG0242|consen 160 LREDSEGG-IVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS------------- 225 (675)
T ss_pred EeEcCCCC-EEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-------------
Confidence 99998765 9999999999999999999999999999999999999999999999999987654321
Q ss_pred cCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC--CCCCCCCCCcccccccccCCC
Q 043730 284 IKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN--SAHVPLRDSKLTRLLRDSFGG 361 (480)
Q Consensus 284 ~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~--~~~iPyRdSkLT~LL~dsLgG 361 (480)
. ..++|+|||||||||+.++++.|.|++||.+||+||++||+||++|+++ ..||||||||||||||++|||
T Consensus 226 ------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgG 298 (675)
T KOG0242|consen 226 ------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGG 298 (675)
T ss_pred ------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCC
Confidence 1 5689999999999999999999999999999999999999999999986 569999999999999999999
Q ss_pred CceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 362 TARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENERQQKAFD 432 (480)
Q Consensus 362 ns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~~~~~~~ 432 (480)
||+|+|||||+|+..+|+||.+||+||+||++|++.+.+|.......+...++.++.+|..+++++.....
T Consensus 299 n~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 299 NARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred CccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999888888888888888888888876444433
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.7e-84 Score=658.27 Aligned_cols=320 Identities=40% Similarity=0.587 Sum_probs=282.3
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCce
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNG 131 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 131 (480)
+|+|+|||||+...|... ....|+........+. ... ..+.|.||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 2 ~i~V~vRvRP~~~~e~~~--~~~~~v~~~~~~~~~~-~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ 76 (337)
T cd01373 2 AVKVVVRIRPPNEIEADG--GQGQCLKKLSSDTLVW-HSH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNG 76 (337)
T ss_pred CeEEEEEcCcCChhhccc--CCCeEEEEcCCCcEEe-eCC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 799999999999888632 2345666554333222 222 25799999999999999999999999999999999999
Q ss_pred eEEecCCCCCCcccccccCCCC----CCCCcchhHHHHHHHHhhcCCC--------CccEEEEEEeEeechhcccCCCCC
Q 043730 132 TVMAYGQTGTGKTFTLGRLGDE----DTSSRGIMVRSMEDILADVSLE--------SDSVSVSYLQLYMETIQDLLDPAN 199 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm~g~~~~----~~~~~Gii~r~~~~lf~~~~~~--------~~~V~vS~~EIynE~v~DLL~~~~ 199 (480)
||||||||||||||||+|.... ...++|||||++++||..+... .+.|++||+|||||+|+|||++..
T Consensus 77 ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~ 156 (337)
T cd01373 77 SIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS 156 (337)
T ss_pred eEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC
Confidence 9999999999999999875432 2357899999999999887543 347999999999999999999988
Q ss_pred CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccc
Q 043730 200 DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINH 279 (480)
Q Consensus 200 ~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~ 279 (480)
..+.+++++..| ++++|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 157 ~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~--------- 226 (337)
T cd01373 157 RNLKIREDIKKG-VYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS--------- 226 (337)
T ss_pred CCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC---------
Confidence 899999998765 9999999999999999999999999999999999999999999999999986543221
Q ss_pred cccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh----CCCCCCCCCCcccccc
Q 043730 280 ASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE----NSAHVPLRDSKLTRLL 355 (480)
Q Consensus 280 ~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~----~~~~iPyRdSkLT~LL 355 (480)
....+.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..||||||||||+||
T Consensus 227 --------~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL 298 (337)
T cd01373 227 --------STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLL 298 (337)
T ss_pred --------CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHH
Confidence 1235679999999999999999999999999999999999999999999985 3589999999999999
Q ss_pred cccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 356 RDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 356 ~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 299 ~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 299 RDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999986
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.9e-83 Score=652.68 Aligned_cols=320 Identities=41% Similarity=0.625 Sum_probs=284.8
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecC-----------CCCCCCceeecccCCCCCChHHHHhhhhhh
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRK-----------NNWDSDTYEFDEVFTESASQKRVYEVVAKP 120 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~p 120 (480)
+|+|+|||||+.+.|...+. ..|+.+......+.... .....+.|.||+||+++++|++||+.+++|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGT--RRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCC--ceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 59999999999998854443 45666654432222111 123467899999999999999999999999
Q ss_pred hHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC----ccEEEEEEeEeechhcccCC
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES----DSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~----~~V~vS~~EIynE~v~DLL~ 196 (480)
+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+.... ..|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 9999999999999999999999999997643 567999999999999887543 47999999999999999999
Q ss_pred CCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccc
Q 043730 197 PANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSE 276 (480)
Q Consensus 197 ~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 276 (480)
+....+.+++++. |.+++.|++++.|.+++|++++|+.|.++|++++|.+|..|||||+||+|+|.+.....+
T Consensus 155 ~~~~~l~i~ed~~-~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~------ 227 (338)
T cd01370 155 PSSGPLELREDPN-QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS------ 227 (338)
T ss_pred CCCCCceEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC------
Confidence 9888899999986 559999999999999999999999999999999999999999999999999988765321
Q ss_pred ccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC---CCCCCCCCcccc
Q 043730 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS---AHVPLRDSKLTR 353 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~---~~iPyRdSkLT~ 353 (480)
.......|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+. .||||||||||+
T Consensus 228 ----------~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~ 297 (338)
T cd01370 228 ----------INQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTR 297 (338)
T ss_pred ----------CCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHH
Confidence 1234678999999999999999999999999999999999999999999999987 899999999999
Q ss_pred cccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 354 LLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 354 LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 298 lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 298 LLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999986
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-83 Score=672.31 Aligned_cols=353 Identities=35% Similarity=0.545 Sum_probs=316.4
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC------CCCCCceeecccCCCC-------CChHHHHhhh
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN------NWDSDTYEFDEVFTES-------ASQKRVYEVV 117 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~f~FD~Vf~~~-------~~Q~~vf~~~ 117 (480)
.+|||+|||||++.+|..... .+++.++.....+...+. ...+++|.||++|.+. +.|+.||+.+
T Consensus 4 ~kVkVaVRVRP~nrREl~l~t--k~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELST--KCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred cceEEEEEecccchhhhcccc--cceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 589999999999999986554 456778777666655422 2467899999999654 7899999999
Q ss_pred hhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC-----ccEEEEEEeEeechhc
Q 043730 118 AKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES-----DSVSVSYLQLYMETIQ 192 (480)
Q Consensus 118 ~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~-----~~V~vS~~EIynE~v~ 192 (480)
+..+|+.+|+|||+||||||||||||||||+|.. ..+|||||++..||..|.... +.|.|||+|||||++|
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~----~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~ 157 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA----EQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVR 157 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccC----CCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchh
Confidence 9999999999999999999999999999997743 467999999999999987643 4799999999999999
Q ss_pred ccCCCCC--CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCc
Q 043730 193 DLLDPAN--DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGRE 270 (480)
Q Consensus 193 DLL~~~~--~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~ 270 (480)
|||+|.. ..++++++...| .||.||++..|.|++|+..+|..|+++|++++|+||..|||||++|.|.|.|.-.+..
T Consensus 158 DLLdPk~ssqtlkVrehsvlG-p~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 158 DLLDPKGSSQTLKVREHSVLG-PYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred hhhCCCCCcceeEEeeccccc-ccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 9999865 458899999988 8999999999999999999999999999999999999999999999999998876654
Q ss_pred ccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC------CCCC
Q 043730 271 EDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN------SAHV 344 (480)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~------~~~i 344 (480)
.. ...-..|+|.|||||||||+.++++.|.|++|+.+||+||++||.||.||++. .++|
T Consensus 237 tg---------------~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfv 301 (1714)
T KOG0241|consen 237 TG---------------HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFV 301 (1714)
T ss_pred cC---------------cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccc
Confidence 33 23446799999999999999999999999999999999999999999999873 4699
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHH
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVEN 424 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~ 424 (480)
|||||.||+||||+|||||+|+||+||||++++|+|||+|||||+|||+|+|.+.||+++++. .+++++.|+++|+..+
T Consensus 302 PYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~qL 380 (1714)
T KOG0241|consen 302 PYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLREQL 380 (1714)
T ss_pred cchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876 6788888888888777
Q ss_pred HH
Q 043730 425 ER 426 (480)
Q Consensus 425 ~~ 426 (480)
+.
T Consensus 381 ~~ 382 (1714)
T KOG0241|consen 381 EQ 382 (1714)
T ss_pred hh
Confidence 65
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5.3e-81 Score=637.47 Aligned_cols=320 Identities=34% Similarity=0.561 Sum_probs=280.3
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecC------------CCCCCCceeecccCCCCCChHHHHhhhhh
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRK------------NNWDSDTYEFDEVFTESASQKRVYEVVAK 119 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~------------~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~ 119 (480)
+|+|+|||||+.+.|...+ ...|+.+.... .+.+.. .....+.|.||+||+++++|++||+.++.
T Consensus 2 ~i~V~vRvRP~~~~E~~~~--~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~ 78 (345)
T cd01368 2 PVKVYLRVRPLSKDELESE--DEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTAL 78 (345)
T ss_pred CEEEEEEeCcCCchhhccC--CCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHH
Confidence 7999999999999886433 24466554332 232222 13356789999999999999999999999
Q ss_pred hhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCccEEEEEEeEeechhcccCCCCC
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDSVSVSYLQLYMETIQDLLDPAN 199 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~V~vS~~EIynE~v~DLL~~~~ 199 (480)
|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+.. +.|++||+|||||+|+|||++.+
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~--~~v~~S~~EIyne~v~DLL~~~~ 152 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG--YSVFVSYVEIYNNYIYDLLEDSP 152 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh--eeEEEEEEEEeCCEeEeCCCCcc
Confidence 99999999999999999999999999997643 5789999999999998876 88999999999999999998755
Q ss_pred C------cceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccc
Q 043730 200 D------NISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDL 273 (480)
Q Consensus 200 ~------~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~ 273 (480)
. .+.+++++. |.+++.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|++.+........
T Consensus 153 ~~~~~~~~l~i~ed~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~- 230 (345)
T cd01368 153 SSTKKRQSLRLREDHN-GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD- 230 (345)
T ss_pred ccccCCCceEEEECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccc-
Confidence 3 588999876 66999999999999999999999999999999999999999999999999998765432111
Q ss_pred cccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh------CCCCCCCC
Q 043730 274 SSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE------NSAHVPLR 347 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~------~~~~iPyR 347 (480)
..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||
T Consensus 231 ----------~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR 300 (345)
T cd01368 231 ----------VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYR 300 (345)
T ss_pred ----------cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCc
Confidence 01112456789999999999999999999999999999999999999999999987 46899999
Q ss_pred CCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 348 DSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 348 dSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
|||||+||+|+|||||+|+||+||||+..+++||++||+||++|+
T Consensus 301 ~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 301 DSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8.5e-81 Score=639.36 Aligned_cols=329 Identities=36% Similarity=0.586 Sum_probs=292.5
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC----CCCCCceeecccCCCC-------CChHHHHhhhhh
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN----NWDSDTYEFDEVFTES-------ASQKRVYEVVAK 119 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~-------~~Q~~vf~~~~~ 119 (480)
++|+|+||+||++..|...+. ..++.+++....+..... ....+.|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGS--KCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCC--ceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 489999999999998876554 457777764444443332 3467899999999999 999999999999
Q ss_pred hhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEeechhccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYMETIQDL 194 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIynE~v~DL 194 (480)
|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.+... .+.|++||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 99999999999999999999999999997743 36799999999999988654 3479999999999999999
Q ss_pred CCCCC---CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcc
Q 043730 195 LDPAN---DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREE 271 (480)
Q Consensus 195 L~~~~---~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~ 271 (480)
|++.. ..+.+++++..| ++++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 155 L~~~~~~~~~l~i~~~~~~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~- 232 (356)
T cd01365 155 LNPKKKNKGNLKVREHPVLG-PYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE- 232 (356)
T ss_pred CCCCccCCcCceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-
Confidence 99874 578899988655 8999999999999999999999999999999999999999999999999988765431
Q ss_pred cccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC--------CCC
Q 043730 272 DLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN--------SAH 343 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~--------~~~ 343 (480)
........|+|+|||||||||..+.+..+.+++|+..||+||++|++||.+|+.. ..|
T Consensus 233 --------------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ 298 (356)
T cd01365 233 --------------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSF 298 (356)
T ss_pred --------------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 1123457899999999999999999999999999999999999999999999864 489
Q ss_pred CCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccccc
Q 043730 344 VPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIK 401 (480)
Q Consensus 344 iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~ 401 (480)
|||||||||+||+|+||||++|+||+||||+..+++||++||+||+|+++|+|.|++|
T Consensus 299 ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 299 IPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred CCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999865
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.2e-80 Score=635.82 Aligned_cols=334 Identities=40% Similarity=0.599 Sum_probs=297.5
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC---CCCCCceeecccCCCCCChHHHHhhhhhhhHHHhcc
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN---NWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLD 127 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 127 (480)
.+|+|+||+||+...|...+. ..++.+....+.+.+... ......|.||+||+++++|++||+.++.|+|+++++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~--~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKS--SVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLM 79 (352)
T ss_pred CCEEEEEEcCcCCccccccCC--CeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 489999999999988854333 456777666666666554 235679999999999999999999999999999999
Q ss_pred CCceeEEecCCCCCCcccccccCCCC-------CCCCcchhHHHHHHHHhhcCCC--CccEEEEEEeEeechhcccCCCC
Q 043730 128 GYNGTVMAYGQTGTGKTFTLGRLGDE-------DTSSRGIMVRSMEDILADVSLE--SDSVSVSYLQLYMETIQDLLDPA 198 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm~g~~~~-------~~~~~Gii~r~~~~lf~~~~~~--~~~V~vS~~EIynE~v~DLL~~~ 198 (480)
|||+||||||||||||||||+|.... ....+|||||++.+||+.+... .+.|++||+|||||+|+|||++.
T Consensus 80 G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 80 GYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred CCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999999875332 1456899999999999988763 45799999999999999999986
Q ss_pred ---CCcceeeecC-CCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccc
Q 043730 199 ---NDNISIVEDP-KTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLS 274 (480)
Q Consensus 199 ---~~~l~i~e~~-~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 274 (480)
...+.+++++ ..+++++.|++++.|.+++|++.+|+.|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~---- 235 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS---- 235 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC----
Confidence 5678899984 44569999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccc
Q 043730 275 SEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRL 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~L 354 (480)
.......|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+|
T Consensus 236 ------------~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~l 303 (352)
T cd01364 236 ------------GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRL 303 (352)
T ss_pred ------------CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHH
Confidence 12345679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 355 LRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 355 L~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
|+|+|||||+|+||+||||+..+++||++||+||++|++|+|.|.+|.
T Consensus 304 L~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 304 LQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999999999999999886
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.8e-79 Score=622.79 Aligned_cols=324 Identities=39% Similarity=0.652 Sum_probs=289.9
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCC----CCCCceeecccCCCCCChHHHHhhhhhhhHHHhc
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNN----WDSDTYEFDEVFTESASQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 126 (480)
.+|+|+||+||+++.|...+. ..++.+++....+.+..+. ...+.|.||+||+++++|++||+.++.|+|++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGA--PEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVL 78 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCC--CeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHh
Confidence 379999999999988865433 4567777666666665443 4678899999999999999999999999999999
Q ss_pred cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCC-Ccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPAN-DNI 202 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~-~~l 202 (480)
+|||+||||||||||||||||+|.. .....+|||||++++||..+... .+.|++||+|||||+|+|||++.. ..+
T Consensus 79 ~G~n~~i~ayG~tgSGKTyTm~G~~-~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l 157 (333)
T cd01371 79 EGYNGTIFAYGQTGTGKTFTMEGVR-EPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKL 157 (333)
T ss_pred CCCceeEEecCCCCCCCcEeecCCC-CcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCce
Confidence 9999999999999999999998743 33457899999999999987654 357999999999999999999876 578
Q ss_pred eeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccc
Q 043730 203 SIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASH 282 (480)
Q Consensus 203 ~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 282 (480)
.+++++..| ++|.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|++......
T Consensus 158 ~i~~~~~~~-~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~------------ 224 (333)
T cd01371 158 ELKERPDRG-VYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED------------ 224 (333)
T ss_pred eEEEcCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC------------
Confidence 899988655 8999999999999999999999999999999999999999999999999988765321
Q ss_pred ccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCC-CCCCCCCcccccccccCCC
Q 043730 283 LIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSA-HVPLRDSKLTRLLRDSFGG 361 (480)
Q Consensus 283 ~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~-~iPyRdSkLT~LL~dsLgG 361 (480)
.......|+|+|||||||||..+.+..+.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||
T Consensus 225 ----~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g 300 (333)
T cd01371 225 ----GENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGG 300 (333)
T ss_pred ----CCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCC
Confidence 12346789999999999999999999999999999999999999999999999775 9999999999999999999
Q ss_pred CceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 362 TARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 362 ns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
||+|+||+||+|...+++||++||+||+|||+|
T Consensus 301 ~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 301 NSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999986
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.8e-79 Score=618.07 Aligned_cols=310 Identities=36% Similarity=0.544 Sum_probs=275.2
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC--------CCCCCceeecccCCCCCChHHHHhhhhhhhHH
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN--------NWDSDTYEFDEVFTESASQKRVYEVVAKPVVE 123 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~ 123 (480)
+|+|+|||||+.+.|...+. ..++.++.. ..+.+... ......|.||+||+++++|++||+.++.|+|+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGE--TDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CeEEEEEcCcCChhhhccCC--ceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 79999999999998864332 334444443 22322211 11367899999999999999999999999999
Q ss_pred HhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC--CccEEEEEEeEeechhcccCCCCCCc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE--SDSVSVSYLQLYMETIQDLLDPANDN 201 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~V~vS~~EIynE~v~DLL~~~~~~ 201 (480)
.+++|||+||||||||||||||||+|.. .++||+||++++||+.+... ...|++||+|||||+|+|||++ ...
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-~~~ 153 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-RKR 153 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-ccc
Confidence 9999999999999999999999997643 56799999999999998764 5689999999999999999997 567
Q ss_pred ceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccc
Q 043730 202 ISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281 (480)
Q Consensus 202 l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 281 (480)
+.+++++. |.+++.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 154 l~i~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------------- 218 (322)
T cd01367 154 LSVLEDGK-GNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------------- 218 (322)
T ss_pred eeEEEcCC-CCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--------------
Confidence 89999876 559999999999999999999999999999999999999999999999999987542
Q ss_pred cccCCCCCceeeeeEEEEeCCCCcccccCC-CccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCC
Q 043730 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSG-SEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 282 ~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLg 360 (480)
....|+|+|||||||||....+ ..+.+++|+.+||+||++|++||.+|+.+..||||||||||+||+|+||
T Consensus 219 --------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~ 290 (322)
T cd01367 219 --------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFI 290 (322)
T ss_pred --------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhC
Confidence 2357999999999999998865 4688999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
|||+|+||+||||+..+++||++||+||+|+|
T Consensus 291 g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 291 GNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.8e-79 Score=615.64 Aligned_cols=311 Identities=36% Similarity=0.562 Sum_probs=279.6
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccc----eEEEec--CCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHh
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTEL----KRLKLR--KNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESV 125 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~----~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 125 (480)
+|+|+|||||+.+.|.. ...|+.+.... ..+.+. .+.+..+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~e~~----~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEED----SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCccccC----CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999988832 23455553331 233333 334567899999999999999999999999999999
Q ss_pred ccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC--CccEEEEEEeEeechhcccCCCCCCcce
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE--SDSVSVSYLQLYMETIQDLLDPANDNIS 203 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~V~vS~~EIynE~v~DLL~~~~~~l~ 203 (480)
++|||+||||||||||||||||+|.. .++|||||++++||+.+... ...|++||+|||||+|+|||++....+.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~ 152 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELP 152 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCce
Confidence 99999999999999999999997643 37799999999999987655 5689999999999999999999888899
Q ss_pred eeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccc
Q 043730 204 IVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHL 283 (480)
Q Consensus 204 i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (480)
+++++. |.+++.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 153 i~~~~~-~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--------------- 216 (319)
T cd01376 153 IREDKD-GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--------------- 216 (319)
T ss_pred EEEcCC-CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC---------------
Confidence 999865 5699999999999999999999999999999999999999999999999999876431
Q ss_pred cCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCc
Q 043730 284 IKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTA 363 (480)
Q Consensus 284 ~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLgGns 363 (480)
....|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||
T Consensus 217 ------~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s 290 (319)
T cd01376 217 ------IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGS 290 (319)
T ss_pred ------ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCc
Confidence 24689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 364 RTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 364 ~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
+|+||+||||+..+++||++||+||+|||
T Consensus 291 ~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 291 RCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred cEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.7e-78 Score=613.06 Aligned_cols=319 Identities=44% Similarity=0.705 Sum_probs=286.9
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCc
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYN 130 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n 130 (480)
.+|+|+||+||++..|...+ ...|+.+... ..+.+... ...+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~--~~~~v~~~~~-~~v~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n 77 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRG--SKSIVKFPGE-DTVSIAGS-DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYN 77 (325)
T ss_pred CCeEEEEEcCcCChhhhccC--CceEEEEcCC-CEEEecCC-CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 48999999999998874333 3456666555 45555543 35679999999999999999999999999999999999
Q ss_pred eeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCCCcceeee
Q 043730 131 GTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPANDNISIVE 206 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~~~l~i~e 206 (480)
+||||||+|||||||||+|... ....+||+||++++||+.+... .+.|++||+|||||+++|||++....+.+++
T Consensus 78 ~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 78 GTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred ceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 9999999999999999987433 2457899999999999988654 3479999999999999999999888899999
Q ss_pred cCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccCC
Q 043730 207 DPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKP 286 (480)
Q Consensus 207 ~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (480)
++..| ++++|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 157 ~~~~~-~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----------------- 218 (325)
T cd01369 157 DKNRG-VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET----------------- 218 (325)
T ss_pred cCCCC-EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC-----------------
Confidence 87655 999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC-CCCCCCCCcccccccccCCCCcee
Q 043730 287 SKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS-AHVPLRDSKLTRLLRDSFGGTART 365 (480)
Q Consensus 287 ~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~-~~iPyRdSkLT~LL~dsLgGns~t 365 (480)
.....|+|+||||||||+..+.+..|.+++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||+|+|
T Consensus 219 --~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t 296 (325)
T cd01369 219 --GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRT 296 (325)
T ss_pred --CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 23578999999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred eEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 366 SLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 366 ~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
+||+||||+..+++||++||+||+|||+|
T Consensus 297 ~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 297 TLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.3e-78 Score=617.49 Aligned_cols=328 Identities=39% Similarity=0.615 Sum_probs=289.6
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCce
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNG 131 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 131 (480)
.|+|+||+||+...|...+. ..|+.+.+....+.... .+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~~~~v~~~~----~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 75 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGC--QVCVSVVPGEPQVTVGT----DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNA 75 (341)
T ss_pred CeEEEEECCCCCchhcccCC--CeEEEEeCCCCEEEecC----CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 69999999999988864433 45677766655665543 5799999999999999999999999999999999999
Q ss_pred eEEecCCCCCCcccccccCCC--CCCCCcchhHHHHHHHHhhcCCCC----ccEEEEEEeEeechhcccCCCC---CCcc
Q 043730 132 TVMAYGQTGTGKTFTLGRLGD--EDTSSRGIMVRSMEDILADVSLES----DSVSVSYLQLYMETIQDLLDPA---NDNI 202 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm~g~~~--~~~~~~Gii~r~~~~lf~~~~~~~----~~V~vS~~EIynE~v~DLL~~~---~~~l 202 (480)
||||||||||||||||+|... ....++|||||++++||+.+.... +.|.+||+|||||+|+|||++. ...+
T Consensus 76 ~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l 155 (341)
T cd01372 76 TVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPI 155 (341)
T ss_pred ceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCc
Confidence 999999999999999987533 235678999999999999987644 4899999999999999999986 4678
Q ss_pred eeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccc
Q 043730 203 SIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASH 282 (480)
Q Consensus 203 ~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 282 (480)
.+++++. |.+++.|++++.|.+++|++.+|..|.++|..++|.+|..|||||+||+|+|.+..........
T Consensus 156 ~i~e~~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~-------- 226 (341)
T cd01372 156 QIREDSK-GNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPM-------- 226 (341)
T ss_pred eEEECCC-CCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccc--------
Confidence 9999876 5599999999999999999999999999999999999999999999999999988764221100
Q ss_pred ccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC---CCCCCCCCcccccccccC
Q 043730 283 LIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS---AHVPLRDSKLTRLLRDSF 359 (480)
Q Consensus 283 ~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~---~~iPyRdSkLT~LL~dsL 359 (480)
..+.......|+|+||||||||+..+++..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|
T Consensus 227 -~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~L 305 (341)
T cd01372 227 -SGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSL 305 (341)
T ss_pred -cccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhc
Confidence 0112245678999999999999999999999999999999999999999999999876 799999999999999999
Q ss_pred CCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccc
Q 043730 360 GGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395 (480)
Q Consensus 360 gGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~ 395 (480)
|||++|+||+||||+..+++||++||+||+||++||
T Consensus 306 gg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 306 GGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.1e-77 Score=605.23 Aligned_cols=316 Identities=39% Similarity=0.627 Sum_probs=283.4
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCce
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNG 131 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 131 (480)
+|+|+||+||+...|... ...++.++.. ..+...++ .....|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 ~V~V~vRvRP~~~~e~~~---~~~~~~~~~~-~~v~~~~~-~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDN---EQVAWSIDND-NTISLEES-TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccC---CcceEEECCC-CEEEEcCC-CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 599999999999888621 2345566554 44444433 457899999999999999999999999999999999999
Q ss_pred eEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCCCcceeeecC
Q 043730 132 TVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPANDNISIVEDP 208 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~~~l~i~e~~ 208 (480)
||||||||||||||||+|.. .++|||||++++||..+... .+.|++||+|||||+|+|||++....+.+++++
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~ 151 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDP 151 (321)
T ss_pred eEEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECC
Confidence 99999999999999997643 56799999999999988654 347999999999999999999998899999998
Q ss_pred CCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccCCCC
Q 043730 209 KTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSK 288 (480)
Q Consensus 209 ~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
..| +++.|++++.|.|++|+..+|..|.++|+.++|.+|..|||||+||+|+|.+...... ..
T Consensus 152 ~~~-~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~----------------~~ 214 (321)
T cd01374 152 NKG-VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS----------------ES 214 (321)
T ss_pred CCC-EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC----------------CC
Confidence 755 8999999999999999999999999999999999999999999999999998764331 12
Q ss_pred CceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC--CCCCCCCCcccccccccCCCCceee
Q 043730 289 PLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS--AHVPLRDSKLTRLLRDSFGGTARTS 366 (480)
Q Consensus 289 ~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~--~~iPyRdSkLT~LL~dsLgGns~t~ 366 (480)
.....|+|+|||||||||..+.+ .+.+++|+.+||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+
T Consensus 215 ~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~ 293 (321)
T cd01374 215 GTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293 (321)
T ss_pred CcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 34678999999999999999998 89999999999999999999999999985 9999999999999999999999999
Q ss_pred EEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 367 LIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 367 ~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
||+||||...+++||++||+||+||++|
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 294 IICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.8e-77 Score=607.13 Aligned_cols=314 Identities=43% Similarity=0.667 Sum_probs=275.6
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEe----------cCCCCCCCceeecccCCCCCChHHHHhhhhhhh
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKL----------RKNNWDSDTYEFDEVFTESASQKRVYEVVAKPV 121 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~pl 121 (480)
.|+|+||+||+...+.. .+.++++...+.+ ..+......|.||+||++ ++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~ 72 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-------SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPV 72 (334)
T ss_pred CeEEEEECCCCCCCCCc-------cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHH
Confidence 48999999999874321 2333333222211 223345678999999999 99999999999999
Q ss_pred HHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCC
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPA 198 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~ 198 (480)
|+++++|+|+||||||||||||||||+|... ...++|||||++++||..++.. .+.|++||+|||||+|+|||++.
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~ 151 (334)
T cd01375 73 VDSALDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDT 151 (334)
T ss_pred HHHHhCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCC
Confidence 9999999999999999999999999987432 3457899999999999988654 35899999999999999999987
Q ss_pred C------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccc
Q 043730 199 N------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREED 272 (480)
Q Consensus 199 ~------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~ 272 (480)
. +.+.+++++. +.++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 152 ~~~~~~~~~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--- 227 (334)
T cd01375 152 PEALESLPAVTILEDSE-QNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--- 227 (334)
T ss_pred ccccccCCceEEEEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC---
Confidence 4 5688899875 45999999999999999999999999999999999999999999999999999864322
Q ss_pred ccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC-CCCCCCCCcc
Q 043730 273 LSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS-AHVPLRDSKL 351 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~-~~iPyRdSkL 351 (480)
.......|+|+|||||||||..+.+..+..++|+..||+||++|++||.+|+.++ .|||||||||
T Consensus 228 --------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkL 293 (334)
T cd01375 228 --------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKL 293 (334)
T ss_pred --------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHH
Confidence 1234578999999999999999999999999999999999999999999999988 9999999999
Q ss_pred cccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 352 TRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 352 T~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
|+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 294 T~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 294 THVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.9e-76 Score=599.36 Aligned_cols=319 Identities=38% Similarity=0.610 Sum_probs=287.7
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccc-eEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccC
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTEL-KRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDG 128 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 128 (480)
+|+|+|+||+||+...|.. ....++.+.... ..+.+.+.......|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST---EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccC---CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCC
Confidence 4799999999999988752 223456666553 6666665545678999999999999999999985 9999999999
Q ss_pred CceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC-----ccEEEEEEeEeechhcccCCCC---CC
Q 043730 129 YNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES-----DSVSVSYLQLYMETIQDLLDPA---ND 200 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~-----~~V~vS~~EIynE~v~DLL~~~---~~ 200 (480)
+|+||||||+|||||||||+|.. .++||+||++++||+.+.... +.|++||+|||||+++|||++. ..
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 99999999999999999997643 567999999999999876543 3799999999999999999986 67
Q ss_pred cceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccc
Q 043730 201 NISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHA 280 (480)
Q Consensus 201 ~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~ 280 (480)
.+.+++++ .|.+++.|++++.|.|++|+.+++..|.++|.++.|.+|..|||||+||+|+|.+.....
T Consensus 153 ~l~i~~~~-~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~----------- 220 (329)
T cd01366 153 KLEIKHDS-KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT----------- 220 (329)
T ss_pred ceEEEECC-CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC-----------
Confidence 79999987 466999999999999999999999999999999999999999999999999998765421
Q ss_pred ccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCC
Q 043730 281 SHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLg 360 (480)
.....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+||
T Consensus 221 --------~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~ 292 (329)
T cd01366 221 --------GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLG 292 (329)
T ss_pred --------CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcC
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccc
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAMKVEN 396 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n 396 (480)
|+++|+||+||||...+++||++||+||+||++|++
T Consensus 293 g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 293 GNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-75 Score=632.19 Aligned_cols=326 Identities=36% Similarity=0.558 Sum_probs=282.1
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCC----CCCCceeecccCCCCCChHHHHhhhhhhhHH
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNN----WDSDTYEFDEVFTESASQKRVYEVVAKPVVE 123 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~ 123 (480)
+.+|+|||+|||||+.+.+...... ..+..... ..+.+.... .....|.||+||+|.++|++||.++ .|+|+
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~ 386 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQS--KVIDTEEQ-GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQ 386 (670)
T ss_pred HhhcCceEEEEecCCCccccccccc--cccccCCc-ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHH
Confidence 4679999999999999888653211 11112111 112222111 1223599999999999999999997 89999
Q ss_pred HhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCC-
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPA- 198 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~- 198 (480)
.+|+|||+||||||||||||||||.|. .+.++|||||++.+||..+... .+.+.+||+|||||.|+|||++.
T Consensus 387 S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~ 463 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES 463 (670)
T ss_pred HHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc
Confidence 999999999999999999999999653 5667899999999999877653 45799999999999999999887
Q ss_pred -CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccc
Q 043730 199 -NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEI 277 (480)
Q Consensus 199 -~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 277 (480)
...+.|+.+.. |..+|+|++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|......
T Consensus 464 ~~~k~~I~~~~~-~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~--------- 533 (670)
T KOG0239|consen 464 YVGKLEIVDDAE-GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL--------- 533 (670)
T ss_pred cccceeEEEcCC-CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC---------
Confidence 46788888865 5599999999999999999999999999999999999999999999999999754322
Q ss_pred cccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccc
Q 043730 278 NHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRD 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~d 357 (480)
......+.|+|||||||||+.+++..|+|++|+.+||+||++||.||.||+.+..||||||||||+||++
T Consensus 534 ----------t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~ 603 (670)
T KOG0239|consen 534 ----------TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQD 603 (670)
T ss_pred ----------cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHh
Confidence 2345679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccc
Q 043730 358 SFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKI 400 (480)
Q Consensus 358 sLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~ 400 (480)
+|||++||+|+++|||...++.||+++|+||.|++.+...+-.
T Consensus 604 sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 604 SLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999999999999999998865543
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.4e-73 Score=580.39 Aligned_cols=326 Identities=44% Similarity=0.672 Sum_probs=291.0
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccc-eEEEec--CCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccC
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTEL-KRLKLR--KNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDG 128 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~-~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 128 (480)
+|+|+||+||+...|...+. ..++.+.... +.+.+. ........|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKS--PSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCC--ceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 58999999999988865432 4466665442 233332 334566899999999999999999999999999999999
Q ss_pred CceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCCCccee
Q 043730 129 YNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPANDNISI 204 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~~~l~i 204 (480)
+|+||||||+|||||||||+|.. .++||+||++++||+.+... .++|++||+|||+|+++|||++.+..+.+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTP----DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCC----CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 99999999999999999997643 46799999999999988654 35799999999999999999998889999
Q ss_pred eecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccccc
Q 043730 205 VEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLI 284 (480)
Q Consensus 205 ~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (480)
++++. |.+++.|++++.|.|++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 155 ~~~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~--------------- 218 (335)
T smart00129 155 REDKK-GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS--------------- 218 (335)
T ss_pred EECCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC---------------
Confidence 99875 56999999999999999999999999999999999999999999999999999763321
Q ss_pred CCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh--CCCCCCCCCCcccccccccCCCC
Q 043730 285 KPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE--NSAHVPLRDSKLTRLLRDSFGGT 362 (480)
Q Consensus 285 ~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~--~~~~iPyRdSkLT~LL~dsLgGn 362 (480)
.......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|++ +..|||||+||||+||+++|||+
T Consensus 219 --~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~ 296 (335)
T smart00129 219 --SSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGN 296 (335)
T ss_pred --CCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCC
Confidence 12346789999999999999999999999999999999999999999999999 56799999999999999999999
Q ss_pred ceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccccc
Q 043730 363 ARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIK 401 (480)
Q Consensus 363 s~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~ 401 (480)
++|+||+||||...+++||++||+||+++++|+|.|+++
T Consensus 297 ~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 297 SKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999999999999999999999998754
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=6.1e-74 Score=584.81 Aligned_cols=318 Identities=45% Similarity=0.694 Sum_probs=275.1
Q ss_pred EcCCCCccccccCCCCCceEEecc----cceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeE
Q 043730 58 RLRPRNAEETVADADFADCVELQT----ELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTV 133 (480)
Q Consensus 58 RvRP~~~~e~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti 133 (480)
||||++..|...+... ++.+.. ................|.||+||+++++|++||+.++.|+|+++|+|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAES--IVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEB--CEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcE--EEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 8999999987655432 232221 1111111222345678999999999999999999999999999999999999
Q ss_pred EecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC------CccEEEEEEeEeechhcccCCCC----CCcce
Q 043730 134 MAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE------SDSVSVSYLQLYMETIQDLLDPA----NDNIS 203 (480)
Q Consensus 134 ~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~------~~~V~vS~~EIynE~v~DLL~~~----~~~l~ 203 (480)
||||+|||||||||+|. ....++||+||++++||..+... ...|+|||+|||||+|+|||++. ...+.
T Consensus 79 ~ayG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~ 156 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLK 156 (335)
T ss_dssp EEEESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBE
T ss_pred Eeecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccc
Confidence 99999999999999774 34567899999999999988653 35799999999999999999987 35699
Q ss_pred eeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccc
Q 043730 204 IVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHL 283 (480)
Q Consensus 204 i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (480)
+++++..|.+++.|++++.|.+++|++.+|..|.++|.++.|.+|..|||||+||+|+|.+........
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~----------- 225 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDD----------- 225 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTE-----------
T ss_pred eeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc-----------
Confidence 999988777999999999999999999999999999999999999999999999999999887654211
Q ss_pred cCCCCCceeeeeEEEEeCCCCcccccCCCc-cchHHHHHHHhhhHHHHHHHHHHHhhC--CCCCCCCCCcccccccccCC
Q 043730 284 IKPSKPLVRKSKLVVVDLAGSERIHKSGSE-GHMLEEAKSINLSLSALGKCINALAEN--SAHVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 284 ~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~-g~~~~E~~~IN~SL~~L~~vI~aL~~~--~~~iPyRdSkLT~LL~dsLg 360 (480)
......|+|+||||||+|+..+.++. +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+||
T Consensus 226 ----~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~ 301 (335)
T PF00225_consen 226 ----EESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLG 301 (335)
T ss_dssp ----EEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTS
T ss_pred ----ccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceeccccc
Confidence 01257899999999999999998864 788999999999999999999999998 89999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
|||+|+||+||||+..+++||++||+||++|++|
T Consensus 302 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 302 GNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999986
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.4e-72 Score=568.35 Aligned_cols=315 Identities=46% Similarity=0.706 Sum_probs=283.1
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC----CCCCCceeecccCCCCCChHHHHhhhhhhhHHHhcc
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN----NWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLD 127 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 127 (480)
+|+|+||+||+...|.. ....++.++.. ..+.+..+ ......|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~i~V~vRvrP~~~~~~~---~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~ 76 (328)
T cd00106 1 NIRVVVRIRPLNGRESK---SEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLE 76 (328)
T ss_pred CeEEEEEcCCCCccccc---CCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhC
Confidence 58999999999877622 23457777764 33444332 245789999999999999999999999999999999
Q ss_pred CCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC-----ccEEEEEEeEeechhcccCCCC--CC
Q 043730 128 GYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES-----DSVSVSYLQLYMETIQDLLDPA--ND 200 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~-----~~V~vS~~EIynE~v~DLL~~~--~~ 200 (480)
|+|+||||||+|||||||||+|.. .++|||||++++||..+.... ..|++||+|||+|+|+|||++. ..
T Consensus 77 G~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~ 152 (328)
T cd00106 77 GYNGTIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSK 152 (328)
T ss_pred CCceeEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCC
Confidence 999999999999999999997633 567999999999999987653 5899999999999999999997 88
Q ss_pred cceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccc
Q 043730 201 NISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHA 280 (480)
Q Consensus 201 ~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~ 280 (480)
.+.+++++. |.+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.......
T Consensus 153 ~l~i~~~~~-~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--------- 222 (328)
T cd00106 153 PLSLREDPK-GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--------- 222 (328)
T ss_pred CcEEEEcCC-CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC---------
Confidence 899999876 5589999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC--CCCCCCCCccccccccc
Q 043730 281 SHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS--AHVPLRDSKLTRLLRDS 358 (480)
Q Consensus 281 ~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~--~~iPyRdSkLT~LL~ds 358 (480)
.....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+
T Consensus 223 --------~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~ 294 (328)
T cd00106 223 --------RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDS 294 (328)
T ss_pred --------ccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHh
Confidence 13578999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 359 FGGTARTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 359 LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
|||+++|+||+||||...+++||++||+||+|||
T Consensus 295 l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 295 LGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-73 Score=574.94 Aligned_cols=318 Identities=33% Similarity=0.525 Sum_probs=277.5
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEe--------cccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVEL--------QTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~--------~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
.+|.||||-||++..|..... .+++.+ +.....+.+.. ......|.||++||+.++++.||..+++|||
T Consensus 208 hrI~VCVRKRPLnkkE~~~ke--iDvisvps~~~l~vHEpk~kVDLtk-YlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKE--IDVISVPSKNVLVVHEPKLKVDLTK-YLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred ceEEEEeecCCCCchhccccc--cceEeccccceEEeeccccccchHH-HHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 689999999999998874332 233333 33222333222 2356789999999999999999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCCCCC--CCCcchhHHHHHHHHhhcCCCCc-----cEEEEEEeEeechhcccC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLGDED--TSSRGIMVRSMEDILADVSLESD-----SVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~--~~~~Gii~r~~~~lf~~~~~~~~-----~V~vS~~EIynE~v~DLL 195 (480)
+.+|+|--+|+||||||||||||||+|...+. ....||..++.+|+|..+....+ .|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 99999999999999999999999998865543 34569999999999998876443 799999999999999999
Q ss_pred CCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 196 DPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 196 ~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
++ +.++.++||.+ +.|+|.||++..|.+.+|++.+|+.|+..|+++.|..|..|||||+||+|.+....
T Consensus 365 ~~-k~KLrvLEDg~-QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~--------- 433 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGN-QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG--------- 433 (676)
T ss_pred cc-ccceEEeecCC-ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---------
Confidence 96 67889999864 67999999999999999999999999999999999999999999999999985421
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccC-CCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKS-GSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRL 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~-~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~L 354 (480)
....+|++.||||||+||...+ .+..+...||..||+||+||..||+||..++.|+|||.||||.+
T Consensus 434 -------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqV 500 (676)
T KOG0246|consen 434 -------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQV 500 (676)
T ss_pred -------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHH
Confidence 2346899999999999997665 45567778999999999999999999999999999999999999
Q ss_pred ccccCCC-CceeeEEEeeCCCCCChHHhHHHHHHHHHhcccc
Q 043730 355 LRDSFGG-TARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395 (480)
Q Consensus 355 L~dsLgG-ns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~ 395 (480)
|+|||-| |++||||+||||.....+.||+|||||+|+|...
T Consensus 501 LRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLs 542 (676)
T KOG0246|consen 501 LRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELS 542 (676)
T ss_pred HHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhc
Confidence 9999988 9999999999999999999999999999999764
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-71 Score=577.54 Aligned_cols=327 Identities=32% Similarity=0.516 Sum_probs=278.3
Q ss_pred CCCCCCEEEEEEcCCCCccccccCCCCCceEEeccc-ceEEEe---------cCCCCCCCceeecccCCCCCChHHHHhh
Q 043730 47 DGVPGRVRVAVRLRPRNAEETVADADFADCVELQTE-LKRLKL---------RKNNWDSDTYEFDEVFTESASQKRVYEV 116 (480)
Q Consensus 47 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~-~~~~~~---------~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~ 116 (480)
.+....|.|+||+||+..... + ..|+.+-.. ...+.. ...+...+.|.|.+||+|+++|.+||+.
T Consensus 27 ~~~~d~v~v~~rvrP~~~~~~--~---~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~ 101 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSDASE--D---EGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDT 101 (809)
T ss_pred hhhhcchheeEeecCCCCCcc--c---cceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHH
Confidence 345578999999999875221 1 234444322 222221 1344567789999999999999999999
Q ss_pred hhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---------------------
Q 043730 117 VAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE--------------------- 175 (480)
Q Consensus 117 ~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~--------------------- 175 (480)
++.|+|.+++.|.|..+|+||.|||||||||.| +...+||+||++.-||..+...
T Consensus 102 ~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G----~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 102 TVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTG----TPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HhHHHHHHHHcccceeEEEeeccCCCceEEeec----CCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 999999999999999999999999999999965 3456799999999999876310
Q ss_pred -----------------------------------------------CccEEEEEEeEeechhcccCCCCCC-----c-c
Q 043730 176 -----------------------------------------------SDSVSVSYLQLYMETIQDLLDPAND-----N-I 202 (480)
Q Consensus 176 -----------------------------------------------~~~V~vS~~EIynE~v~DLL~~~~~-----~-l 202 (480)
.++|||||+|||||.|||||.+.+. . .
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ 257 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLK 257 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhh
Confidence 0149999999999999999987643 2 3
Q ss_pred eeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccc
Q 043730 203 SIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASH 282 (480)
Q Consensus 203 ~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 282 (480)
.+++| .+|..||.|++||.|.+.+|++++|+.|.++|+.++|.+|..|||||+||+|.+.+.....
T Consensus 258 ll~~d-~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~------------- 323 (809)
T KOG0247|consen 258 LLRED-TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ------------- 323 (809)
T ss_pred hhhhc-cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-------------
Confidence 34555 5688999999999999999999999999999999999999999999999999998765431
Q ss_pred ccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-----CCCCCCCCCcccccccc
Q 043730 283 LIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-----SAHVPLRDSKLTRLLRD 357 (480)
Q Consensus 283 ~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-----~~~iPyRdSkLT~LL~d 357 (480)
....+..|.|.|||||||||..++++.|.|++||.+||.||++||+||.+|..+ +.+|||||||||++++.
T Consensus 324 ----~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~ 399 (809)
T KOG0247|consen 324 ----DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKN 399 (809)
T ss_pred ----ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHH
Confidence 224578899999999999999999999999999999999999999999999874 46899999999999999
Q ss_pred cCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccc
Q 043730 358 SFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKI 400 (480)
Q Consensus 358 sLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~ 400 (480)
+|.|..+.+||+||+|...+|+|+++.|+||.-|+.|.+...+
T Consensus 400 ~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 400 YFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred hcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 9999999999999999999999999999999999998765544
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.8e-70 Score=583.65 Aligned_cols=341 Identities=36% Similarity=0.551 Sum_probs=297.3
Q ss_pred cCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCC
Q 043730 59 LRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQ 138 (480)
Q Consensus 59 vRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGq 138 (480)
|||+...|...+. ..|+.+.+..+++.+. ...+|+||+||+....|.++|+.++.|+++.+|+|||+|++||||
T Consensus 1 vRpl~~~e~~~g~--~~c~~~~~~~pqv~ig----~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQ 74 (913)
T KOG0244|consen 1 VRPLKQMEEEQGC--RRCTEVSPRTPQVAIG----KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQ 74 (913)
T ss_pred CCCccchHHHhcc--hhhcccCCCCCceeec----CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecc
Confidence 6999998887776 5688877777777765 347999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC---ccEEEEEEeEeechhcccCCCCCC--cceeeecCCCCce
Q 043730 139 TGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES---DSVSVSYLQLYMETIQDLLDPAND--NISIVEDPKTGDV 213 (480)
Q Consensus 139 tgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~---~~V~vS~~EIynE~v~DLL~~~~~--~l~i~e~~~~g~~ 213 (480)
|||||||||++.........|+|||++..+|..+.... +.|.|||+|||+|.|+|||.|... ++.+.+ ..|.+
T Consensus 75 tgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e--~~g~i 152 (913)
T KOG0244|consen 75 TGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE--PKGEI 152 (913)
T ss_pred cCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc--cCCce
Confidence 99999999976433333446999999999999887543 579999999999999999996543 355555 35779
Q ss_pred ecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccCCCCCceee
Q 043730 214 SLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRK 293 (480)
Q Consensus 214 ~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (480)
.+.|++++.|.+..++...|..|...|++++|+||..|||||+||+|.+++...... .....
T Consensus 153 t~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~------------------~s~~~ 214 (913)
T KOG0244|consen 153 TIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK------------------RSSFC 214 (913)
T ss_pred EEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc------------------cchhh
Confidence 999999999999999999999999999999999999999999999999987543321 22456
Q ss_pred eeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCC--CCCCCCCcccccccccCCCCceeeEEEee
Q 043730 294 SKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSA--HVPLRDSKLTRLLRDSFGGTARTSLIVTI 371 (480)
Q Consensus 294 s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~--~iPyRdSkLT~LL~dsLgGns~t~~I~~i 371 (480)
+||+|||||||||.++++++|.|++||.+||.+|++||+||.||..... |||||||||||||||+||||+.|+||+||
T Consensus 215 sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCi 294 (913)
T KOG0244|consen 215 SKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACI 294 (913)
T ss_pred hhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeec
Confidence 9999999999999999999999999999999999999999999988665 99999999999999999999999999999
Q ss_pred CCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 043730 372 GPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENER 426 (480)
Q Consensus 372 sp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~ 426 (480)
||+..+.+||++||+||.||++|+|+|.+|.++. ...+..++.+++.|+.++..
T Consensus 295 Spadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~-~~~~~~lK~ql~~l~~ell~ 348 (913)
T KOG0244|consen 295 SPADSNAQETLNTLRYADRAKQIKNKPVVNQDPK-SFEMLKLKAQLEPLQVELLS 348 (913)
T ss_pred ChhhhhhhhHHHHHHHhhHHHHhcccccccccHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998543 23445566666666666543
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-63 Score=536.14 Aligned_cols=318 Identities=41% Similarity=0.633 Sum_probs=277.8
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCC
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGY 129 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 129 (480)
...+++.++..|-...+...... . ...+.. ......+|.||+||++.++|++||+..++|+++.++.||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~--~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~ 89 (568)
T COG5059 21 VSDIKSTIRIIPGELGERLINTS--------K-KSHVSL--EKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGY 89 (568)
T ss_pred ecCceEEEeecCCCcchheeecc--------c-cccccc--ccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcc
Confidence 35789999999966553111110 0 000111 111156799999999999999999999999999999999
Q ss_pred ceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC----ccEEEEEEeEeechhcccCCCCCCcceee
Q 043730 130 NGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES----DSVSVSYLQLYMETIQDLLDPANDNISIV 205 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~----~~V~vS~~EIynE~v~DLL~~~~~~l~i~ 205 (480)
|+||||||||||||||||.|. ...+||||+++.+||..+.... +.|.+||+|||||+++|||.+....+.++
T Consensus 90 N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~ 165 (568)
T COG5059 90 NCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIR 165 (568)
T ss_pred cceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccccc
Confidence 999999999999999999653 3678999999999999876543 57999999999999999999887777788
Q ss_pred ecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccC
Q 043730 206 EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIK 285 (480)
Q Consensus 206 e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 285 (480)
++...| +.+.|+++..+.+.+|++.+|+.|..+|+++.|.+|..|||||+||++.+.+......
T Consensus 166 ~~~~~~-v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~--------------- 229 (568)
T COG5059 166 EDSLLG-VKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG--------------- 229 (568)
T ss_pred ccCCCc-eEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---------------
Confidence 877654 9999999999999999999999999999999999999999999999999987654331
Q ss_pred CCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh--CCCCCCCCCCcccccccccCCCCc
Q 043730 286 PSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE--NSAHVPLRDSKLTRLLRDSFGGTA 363 (480)
Q Consensus 286 ~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~--~~~~iPyRdSkLT~LL~dsLgGns 363 (480)
....++|.||||||||++..++..+.+++|+..||+||.+||+||++|.. +..|||||+|||||||+++|||++
T Consensus 230 ----~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~ 305 (568)
T COG5059 230 ----TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNC 305 (568)
T ss_pred ----ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCc
Confidence 22347999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred eeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 364 RTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 364 ~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
+|+|||||+|...+++||.+||+||.||+.|+|.+..+.
T Consensus 306 ~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 306 NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 999999999999999999999999999999999998884
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.6e-52 Score=391.03 Aligned_cols=179 Identities=47% Similarity=0.719 Sum_probs=166.2
Q ss_pred HHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCccEEEEEEeEeechhc
Q 043730 113 VYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDSVSVSYLQLYMETIQ 192 (480)
Q Consensus 113 vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~V~vS~~EIynE~v~ 192 (480)
||+.++ |+|+.+++|||+||||||||||||||||+|.. .++||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH-------------------------
Confidence 999999 99999999999999999999999999997643 567999999988
Q ss_pred ccCCCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccc
Q 043730 193 DLLDPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREED 272 (480)
Q Consensus 193 DLL~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~ 272 (480)
++.++..|.++|+.+.|.+|..|||||+||+|++.+......
T Consensus 58 ------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-- 99 (186)
T cd01363 58 ------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-- 99 (186)
T ss_pred ------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC--
Confidence 888999999999999999999999999999999987654331
Q ss_pred ccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccc
Q 043730 273 LSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLT 352 (480)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT 352 (480)
.......++|+||||||||+..+.+..+.+++|++.||+||.+|++||.+|++++.||||||||||
T Consensus 100 --------------~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT 165 (186)
T cd01363 100 --------------ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLT 165 (186)
T ss_pred --------------CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHH
Confidence 113457899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeeEEEeeCC
Q 043730 353 RLLRDSFGGTARTSLIVTIGP 373 (480)
Q Consensus 353 ~LL~dsLgGns~t~~I~~isp 373 (480)
+||||+|||||+|+||+||||
T Consensus 166 ~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 166 RLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.00 E-value=5.1e-08 Score=106.04 Aligned_cols=209 Identities=28% Similarity=0.276 Sum_probs=130.9
Q ss_pred CCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcC
Q 043730 94 DSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVS 173 (480)
Q Consensus 94 ~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~ 173 (480)
....|.||.+|.+...+..++... ..+++..++| +++|+++++|+++||- ....++..-.+...|..+.
T Consensus 351 ~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 419 (568)
T COG5059 351 EIEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLK------SRIDLIMKSIISGTFERKK 419 (568)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhccc------chhhhhhhhhhhhhhhhhh
Confidence 345799999999999999999876 5577888888 9999999999999993 1233566656566676655
Q ss_pred CCCcc-----EEEEEEeEeechhcccCCCCCCc--ceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccC
Q 043730 174 LESDS-----VSVSYLQLYMETIQDLLDPANDN--ISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTK 246 (480)
Q Consensus 174 ~~~~~-----V~vS~~EIynE~v~DLL~~~~~~--l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 246 (480)
..... ..+-+.++|-....+++...... -.+......+.-....++. ......+..... .+...+..+.+.
T Consensus 420 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 497 (568)
T COG5059 420 LLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTK 497 (568)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccc
Confidence 43332 22333334422222222211110 0000000000000000111 111111111111 567888999999
Q ss_pred CCCCCCCceeEEEEEEEEeeccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhh
Q 043730 247 LNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLS 326 (480)
Q Consensus 247 ~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~S 326 (480)
.|..++++|.+|..+......... ... +..|||||+||. .+..-+.++++...+|++
T Consensus 498 ~n~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~ 554 (568)
T COG5059 498 LNLRSSRSHSKFRDHLNGSNSSTK---------------------ELS-LNQVDLAGSERK-VSQSVGELLRETQSLNKS 554 (568)
T ss_pred hhhhhcccchhhhhcccchhhhhH---------------------HHH-hhhhhccccccc-hhhhhHHHHHhhHhhhhc
Confidence 999999999999887643221110 011 789999999999 889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 043730 327 LSALGKCINALA 338 (480)
Q Consensus 327 L~~L~~vI~aL~ 338 (480)
|..++.+|.++.
T Consensus 555 l~~~~d~~~~~~ 566 (568)
T COG5059 555 LSSLGDVIHALG 566 (568)
T ss_pred cccchhhhhhcc
Confidence 999999998764
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.045 Score=58.18 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=50.3
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccC----CCCC---CCCcchhHHHHHHH
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRL----GDED---TSSRGIMVRSMEDI 168 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~----~~~~---~~~~Gii~r~~~~l 168 (480)
..|....-|.|.-+|-+-- ..|++.+-.|.-.-+ -.|.|||||||||-.. +... ..+.-+ ..+|
T Consensus 3 ~~F~l~s~f~PaGDQP~AI----~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTL----AaQL 73 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEAI----AELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTL----AAQL 73 (663)
T ss_pred CceEeccCCCCCCCcHHHH----HHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhH----HHHH
Confidence 4677778899988886533 445666556655443 4599999999999320 0000 111122 2333
Q ss_pred Hhhc----CCCCccEEEEEEeEeec
Q 043730 169 LADV----SLESDSVSVSYLQLYME 189 (480)
Q Consensus 169 f~~~----~~~~~~V~vS~~EIynE 189 (480)
|... ..+.-..+|||+.-|.-
T Consensus 74 y~Efk~fFP~NaVEYFVSYYDYYQP 98 (663)
T COG0556 74 YSEFKEFFPENAVEYFVSYYDYYQP 98 (663)
T ss_pred HHHHHHhCcCcceEEEeeeccccCc
Confidence 3332 23334689999999854
No 32
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.37 E-value=0.082 Score=56.21 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=25.3
Q ss_pred hhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
..+..+++.-++.|+.-|+||||||.||+
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34567788899999999999999999994
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.22 E-value=0.03 Score=53.84 Aligned_cols=49 Identities=33% Similarity=0.573 Sum_probs=30.6
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||.-+..+ .++..|..+ ..+.+.--..+|. +|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 479999987643 356666543 4444442223444 788999999999988
No 34
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.17 E-value=0.024 Score=56.36 Aligned_cols=30 Identities=33% Similarity=0.620 Sum_probs=27.7
Q ss_pred hhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 456888899999999999999999999998
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=93.88 E-value=0.043 Score=53.05 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=32.0
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..++||..+.... ..-+ ..+.+.+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCCh-HHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 4688999997542 2211 22233333577888999999999999998
No 36
>PRK06620 hypothetical protein; Validated
Probab=92.05 E-value=0.094 Score=50.21 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=33.2
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCc---eeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYN---GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n---~ti~aYGqtgSGKTyTm 147 (480)
..|+||..+...++ ...|..+. .+.+ .+ |+| -.++-||++|+||||.+
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~-~~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIK-NWQC-GF-GVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHH-HHHH-cc-ccCCCcceEEEECCCCCCHHHHH
Confidence 47899998876444 55776653 2322 11 444 35899999999999998
No 37
>PRK12377 putative replication protein; Provisional
Probab=91.82 E-value=0.13 Score=50.44 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=35.8
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
..+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 34677765555667767765 356777766654 467889999999999983
No 38
>PRK09087 hypothetical protein; Validated
Probab=91.33 E-value=0.13 Score=49.71 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=31.8
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||..+...++ ..+|..+ +....-.+..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeecCch-HHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHH
Confidence 46889998865444 4477643 3322223556899999999999998
No 39
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.08 E-value=0.13 Score=56.51 Aligned_cols=50 Identities=30% Similarity=0.495 Sum_probs=34.0
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
..|+||..+-... +.-.|.. +..+++..-.+||. ||-||.+|+||||.+.
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 4689998775444 3445533 34455443346776 8999999999999983
No 40
>PRK06526 transposase; Provisional
Probab=90.84 E-value=0.16 Score=50.07 Aligned_cols=45 Identities=27% Similarity=0.237 Sum_probs=28.2
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR 149 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g 149 (480)
||.-+.+..++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 343355555655555443333443 4554 78999999999999843
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.77 E-value=0.19 Score=48.75 Aligned_cols=46 Identities=13% Similarity=0.386 Sum_probs=30.7
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||..+.. .+...+..+ ..+.. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 46788877654 456666544 22221 222347899999999999998
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=90.74 E-value=0.18 Score=48.89 Aligned_cols=45 Identities=20% Similarity=0.495 Sum_probs=28.7
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhcc---CC-ceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLD---GY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~---G~-n~ti~aYGqtgSGKTyTm 147 (480)
..|+||.-+... +...+. .++...+ ++ ...++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~~--~~~a~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPGA--NAAALG-----YVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcCC--hHHHHH-----HHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 468899988432 333333 3333222 22 246789999999999998
No 43
>PRK08116 hypothetical protein; Validated
Probab=90.65 E-value=0.15 Score=50.50 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=34.5
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhcc--CCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLD--GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~--G~n~ti~aYGqtgSGKTyTm 147 (480)
..++||... .+..+...|.. +...++.+.+ ..+..++-||.+|+||||.+
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 356788655 34555656654 3556666543 34556999999999999998
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.42 E-value=0.25 Score=48.30 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...+||........|..++..+ ...++.+..|+ ..++-||.+|+||||.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 3467777654445666676654 44555554443 36889999999999998
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.05 E-value=0.22 Score=53.08 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=33.8
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
...|+||..+.. ..+...|..+ ..+.+. -..||. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 357899997754 4455566644 333332 123675 9999999999999983
No 46
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.70 E-value=0.26 Score=51.82 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...|+||...- ...+...|..+ ..+.+.--..+| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 35789998543 24455556543 334433111244 4788999999999998
No 47
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.44 E-value=0.16 Score=51.83 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=25.2
Q ss_pred HHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..+++. +...++.+-.+. -.|+-||++|+||||.+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 344443 355777766554 56999999999999987
No 48
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=89.41 E-value=0.099 Score=50.90 Aligned_cols=125 Identities=18% Similarity=0.310 Sum_probs=73.8
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCce-eEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNG-TVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE 175 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~-ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~ 175 (480)
...+|...+-+...+.+.+.+ ..+++|..+ -++-||..|+|||.++ ..++......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlV------------------kall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLV------------------KALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHH------------------HHHHHHHhhc
Confidence 456777777766666666665 567777755 3667999999999987 2222222222
Q ss_pred CccEEEEEEeEeechhccc------CCCCCCcceeeecCCCCceecCCCeEEE-ecCHHHHHHHHHHHhhcccccccCCC
Q 043730 176 SDSVSVSYLQLYMETIQDL------LDPANDNISIVEDPKTGDVSLPGATLVQ-IRDQQSFTELLRWGEAHRVAANTKLN 248 (480)
Q Consensus 176 ~~~V~vS~~EIynE~v~DL------L~~~~~~l~i~e~~~~g~~~v~gl~~~~-v~s~~e~~~ll~~g~~~R~~~~t~~n 248 (480)
. +-.+||..+.+.|| |...+...-+ ++.+|+.-. =.+...+..+|+-|...| .....+.
T Consensus 80 G----LRlIev~k~~L~~l~~l~~~l~~~~~kFIl---------f~DDLsFe~~d~~yk~LKs~LeGgle~~-P~Nvliy 145 (249)
T PF05673_consen 80 G----LRLIEVSKEDLGDLPELLDLLRDRPYKFIL---------FCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIY 145 (249)
T ss_pred C----ceEEEECHHHhccHHHHHHHHhcCCCCEEE---------EecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEE
Confidence 1 66788888766555 3322222222 223333211 123566677777666555 4556667
Q ss_pred CCCCCceeEE
Q 043730 249 TESSRSHAIL 258 (480)
Q Consensus 249 ~~SSRSH~i~ 258 (480)
++|.|-|.|-
T Consensus 146 ATSNRRHLv~ 155 (249)
T PF05673_consen 146 ATSNRRHLVP 155 (249)
T ss_pred Eecchhhccc
Confidence 7788888764
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.39 E-value=0.31 Score=50.09 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=24.1
Q ss_pred hHHHHhhhhhhhHHHhcc-CCceeEEecCCCCCCccccc
Q 043730 110 QKRVYEVVAKPVVESVLD-GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 110 Q~~vf~~~~~plv~~~l~-G~n~ti~aYGqtgSGKTyTm 147 (480)
.++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 20 Re~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444322 2334443 45668999999999999997
No 50
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.16 E-value=0.27 Score=52.40 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...|+||..... ..+...|..+ ..+.+.--..+| .++-||++|+||||.+
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 357889885433 3445555543 334433212345 4788999999999998
No 51
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.83 E-value=0.22 Score=45.10 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.9
Q ss_pred ChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCcccccc
Q 043730 109 SQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm~ 148 (480)
-|.++.+.+ ++.+-.+ ....++..++||||||++|.
T Consensus 7 ~Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 7 YQQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 355655554 3333333 34555667799999999993
No 52
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.47 E-value=0.41 Score=49.79 Aligned_cols=38 Identities=32% Similarity=0.415 Sum_probs=24.3
Q ss_pred ChHHHHhhhhhhhHHHhc-cCCceeEEecCCCCCCccccc
Q 043730 109 SQKRVYEVVAKPVVESVL-DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-++-++.+.. .+...+ .+....++-||++|+|||+++
T Consensus 34 ~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33444444422 333344 345567899999999999998
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.40 E-value=0.36 Score=45.95 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=31.6
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||....+ .+..+++.+ +.++ .......|+-||++|+||||.+
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 45778877732 445555543 2222 2566778999999999999998
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.48 Score=49.17 Aligned_cols=25 Identities=44% Similarity=0.719 Sum_probs=18.6
Q ss_pred HHhccC-CceeEEecCCCCCCccccc
Q 043730 123 ESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
..++.| -...++.||.||||||.|+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334443 3334999999999999998
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.55 E-value=0.37 Score=41.26 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...+.......++.+|++|+|||+.+
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33333334456888999999999887
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.41 E-value=0.5 Score=45.26 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=30.3
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||..+.. .. +.+... ++.++.. .+.+..++-||++|+||||.+
T Consensus 13 ~~~~~d~f~~~-~~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG-EN-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC-Cc-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 45889998843 22 333332 3333331 234557899999999999998
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.41 E-value=0.37 Score=48.76 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=33.1
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCccccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTLGR 149 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm~g 149 (480)
.+||.+-.....+..++..+ ...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 44555433333566677643 5566655543 234689999999999999843
No 58
>PRK08181 transposase; Validated
Probab=87.28 E-value=0.53 Score=46.72 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=26.5
Q ss_pred ecccCCCCCChHHHHhhh-hhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 100 FDEVFTESASQKRVYEVV-AKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~-~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHH
Confidence 444455555554444432 112222 4555 8899999999999984
No 59
>PRK08727 hypothetical protein; Validated
Probab=87.15 E-value=0.38 Score=46.55 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCc-eeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYN-GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKTyTm 147 (480)
..|+||.-+.... + ....+ .+ +..|.. -.|+-||++|+||||.+
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~-~~----~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQL-QA----LAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCCcH-H--HHHHH-HH----HHhccCCCeEEEECCCCCCHHHHH
Confidence 4578888774433 2 22221 11 222332 35999999999999998
No 60
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.06 E-value=0.93 Score=50.63 Aligned_cols=89 Identities=24% Similarity=0.496 Sum_probs=54.0
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE 175 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~ 175 (480)
..+.|+.+......+...+... .+-+..++++++.. +|++|++.+ .....|++.+.+..++......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSDV-QPFVQSALEGLNVK--------AGLTYTMEG----SNQPGGLLARLFKELIDLANSD 92 (670)
T ss_pred cccCccccccccccccccCCcc-ccchhhhhhhhhcc--------hhhhhhhhh----hcCcchhHHHhhhhcccccccC
Confidence 3556666665544433333332 34455666666654 899999943 3344577777777776543322
Q ss_pred CccEEEEEEeEeechhcccCCCCCC
Q 043730 176 SDSVSVSYLQLYMETIQDLLDPAND 200 (480)
Q Consensus 176 ~~~V~vS~~EIynE~v~DLL~~~~~ 200 (480)
. .. ..++.|++.+.|++..-..
T Consensus 93 ~-~~--~~~~~~~~~~~~~~~~~q~ 114 (670)
T KOG0239|consen 93 K-TS--NVVEAYNERLRDLLSELQS 114 (670)
T ss_pred C-Cc--hhHHHHHHHHhhhcccccc
Confidence 1 12 2688899999999975443
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.94 E-value=0.38 Score=51.37 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=31.3
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+||...... +++..|.. +..+...-=..|| .+|-||.+|+||||.|
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 58999977554 44556643 3444332111244 4789999999999998
No 62
>PF13245 AAA_19: Part of AAA domain
Probab=86.32 E-value=0.36 Score=38.27 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=17.3
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|..++. -+..++.-|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444455 3334455899999999997
No 63
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.81 E-value=0.53 Score=49.33 Aligned_cols=50 Identities=26% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...|+||........ .-.|... ..+.+.-.+.---||-||.+|+||||-|
T Consensus 81 ~~~ytFdnFv~g~~N-~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVVGPSN-RLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheeeCCch-HHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 457999987765444 4444432 1232322233335889999999999999
No 64
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.64 E-value=0.69 Score=45.52 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=34.5
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGR 149 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g 149 (480)
++|.|..+-.....+..+|... ..+++.+-.|.| ++-||++|+||||-...
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 4565555544555677888776 455655554444 57799999999999843
No 65
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=85.28 E-value=0.43 Score=49.18 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=29.4
Q ss_pred ceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCccEEEEEEeEee
Q 043730 130 NGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDSVSVSYLQLYM 188 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~V~vS~~EIyn 188 (480)
-.-|+-||.+||||||++ +.+|+.. +...||++++|-|.
T Consensus 30 PS~~~iyG~sgTGKT~~~------------------r~~l~~~--n~~~vw~n~~ecft 68 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV------------------RQLLRKL--NLENVWLNCVECFT 68 (438)
T ss_pred ceeEEEeccCCCchhHHH------------------HHHHhhc--CCcceeeehHHhcc
Confidence 344689999999999998 5566655 23468888888875
No 66
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=84.78 E-value=0.38 Score=40.73 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=13.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++.+|+||+|||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 577899999999998
No 67
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.20 E-value=0.46 Score=52.24 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++..-++.|+..|+||||||.||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455667777899999999999999998
No 68
>PRK10436 hypothetical protein; Provisional
Probab=84.13 E-value=0.48 Score=50.71 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.4
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..++..-++.|+..|+||||||.||
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHH
Confidence 45566677889999999999999999
No 69
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.79 E-value=0.71 Score=45.44 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=35.2
Q ss_pred CceeecccCCCCCC---------hHHHHhhh-hhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESAS---------QKRVYEVV-AKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~---------Q~~vf~~~-~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|.....|..... --.-|++. ..++++++.=-.-+.|+..|.|||||+.||
T Consensus 83 gRfRvnAf~qr~~~g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 83 GRFRVNAFYQRGLAGLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred ceEEeehhhhcCcchhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 35666665544322 11224443 456777777778888999999999999998
No 70
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.77 E-value=0.54 Score=50.72 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=22.7
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++..-.+.|+..|+||||||.||
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 445566777788999999999999999
No 71
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=83.57 E-value=0.74 Score=51.41 Aligned_cols=32 Identities=38% Similarity=0.638 Sum_probs=24.3
Q ss_pred ceeEEecCCCCCCccccc------ccCCCCCCCCcchh
Q 043730 130 NGTVMAYGQTGTGKTFTL------GRLGDEDTSSRGIM 161 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm------~g~~~~~~~~~Gii 161 (480)
|-.++.+|+||||||.-+ -|++.....++|+|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmI 308 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMI 308 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCee
Confidence 446777899999999987 46666666667776
No 72
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=83.47 E-value=0.43 Score=45.68 Aligned_cols=15 Identities=40% Similarity=0.809 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 346789999999999
No 73
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=83.14 E-value=2.2 Score=41.57 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=14.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|...|++|+|||.++
T Consensus 28 ~i~vvG~~~~GKSt~l 43 (240)
T smart00053 28 QIAVVGGQSAGKSSVL 43 (240)
T ss_pred eEEEEcCCCccHHHHH
Confidence 3778999999999998
No 74
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.09 E-value=1.9 Score=49.40 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=17.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|-+.+||-||++|+|||.|+
T Consensus 778 sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 355567889999999999998
No 75
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.72 E-value=0.51 Score=44.43 Aligned_cols=18 Identities=50% Similarity=0.789 Sum_probs=16.0
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
++.|+-.|+||||||.+|
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367888999999999998
No 76
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.66 E-value=0.39 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.4
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999998
No 77
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.63 E-value=0.65 Score=48.28 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.7
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.++.|+..|+||||||+||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999
No 78
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.59 E-value=0.64 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=20.5
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++.--.+.|+-.|+||||||.||
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 344444434577899999999999999
No 79
>PRK06921 hypothetical protein; Provisional
Probab=82.31 E-value=0.93 Score=44.91 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=20.4
Q ss_pred hhhHHHhcc---CCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLD---GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~---G~n~ti~aYGqtgSGKTyTm 147 (480)
...++.+-+ +....++-||++|+||||.+
T Consensus 103 ~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 103 VEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred HHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 445554432 23456889999999999998
No 80
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.14 E-value=0.73 Score=41.28 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=18.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+.+|.| ++..|+||+|||+..
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHH
Confidence 344456777 678899999999986
No 81
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.96 E-value=0.72 Score=47.76 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.9
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
--.+.|+..|+||||||.||
T Consensus 132 ~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 34688999999999999998
No 82
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=81.80 E-value=0.52 Score=46.46 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=15.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
.+.|+.-|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 455667799999999999
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.74 E-value=0.59 Score=39.47 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45788999999999998
No 84
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.03 E-value=0.69 Score=43.52 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=19.3
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++...+..++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 344555555545566899999999998
No 85
>PF12846 AAA_10: AAA-like domain
Probab=80.93 E-value=0.62 Score=45.88 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
|.-++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456788999999999998
No 86
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.82 E-value=0.87 Score=45.06 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=20.1
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..++..-.+.|+-.|.||||||.||
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 34455555567888899999999998
No 87
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=80.63 E-value=1.1 Score=46.55 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=28.1
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..|+.+|+.+...+. ......+|.-|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3579999998865443 234456788999999999997
No 88
>PRK09183 transposase/IS protein; Provisional
Probab=79.69 E-value=1.3 Score=43.56 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=26.1
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
||.=|.+..+...+..-..-.. +-.|.| ++-+|++|+||||.+.
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 4555666555544433221112 224655 5679999999999983
No 89
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=79.48 E-value=1 Score=41.74 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.0
Q ss_pred eeEEecCCCCCCcccccc
Q 043730 131 GTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm~ 148 (480)
-.++-||++|+||||...
T Consensus 48 ~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp -EEEEEESTTSSHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHH
Confidence 348899999999999973
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=79.42 E-value=1.5 Score=46.87 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHh--ccC--CceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESV--LDG--YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~--l~G--~n~ti~aYGqtgSGKTyTm 147 (480)
...|+||.-.... .+...|.. +..+.+.. ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred CccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 3568999877543 44545543 34444322 223 454 678999999999998
No 91
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=78.81 E-value=2.9 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.4
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+.+|.|+.|+| +||||||-+
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHH
Confidence 345567999999988 899999988
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=78.80 E-value=1.4 Score=43.06 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..++.....++-+|++|+|||+++
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444557888999999999998
No 93
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.95 E-value=28 Score=36.25 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 043730 407 KSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQ---NRISEVERNFADALEKEKLKC-QMEYMESVKKL 475 (480)
Q Consensus 407 ~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q---~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~l 475 (480)
+..++.|+.|+..|+..+.+-++...+++.....|-. ...+.+++.+...+|+....+ ++++.++.-++
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslem 324 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEM 324 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4456677888888888777777777777666655432 223334445555555443333 33555554333
No 94
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.56 E-value=1.1 Score=45.67 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=18.9
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++..++.+. ..|+-.|.||||||++|
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3455555543 45666699999999887
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=77.15 E-value=1.7 Score=43.66 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=19.0
Q ss_pred hHHHhccC-CceeEEecCCCCCCccccc
Q 043730 121 VVESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
++...+.+ .---.+-||+.|+|||.|.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33444433 4445688999999999996
No 96
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=76.81 E-value=0.94 Score=45.67 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.8
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++..++.+ ...|+-.|.||||||.+|
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 344455553 356778899999999998
No 97
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=76.74 E-value=1.2 Score=40.41 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=15.2
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++....|-...++-+|..|+|||+.+
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 34334677788999999999999997
No 98
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=76.36 E-value=3.6 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=20.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.|-||+-.|.+|||||.++
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 689999999999999999997
No 99
>PF13479 AAA_24: AAA domain
Probab=76.17 E-value=1.2 Score=42.39 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.2
Q ss_pred ceeEEecCCCCCCcccccc
Q 043730 130 NGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~ 148 (480)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999873
No 100
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=76.04 E-value=1.1 Score=42.23 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=20.5
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.+.+-.|.+..++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444444566889999999999999998
No 101
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=75.81 E-value=2.3 Score=46.46 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES 176 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~ 176 (480)
.+.||.+.+....=.++.+.+ .. +...+..|+-+|.+||||++.- +++...-. ....
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA---------------~~ih~~s~--r~~~ 248 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIA---------------KAIHYLSP--RAKR 248 (534)
T ss_pred cCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHH---------------HHHHHhCC--CCCC
Confidence 478999988765444444433 22 2367888999999999999885 22222110 0111
Q ss_pred ccEEEEEEeEeechhcc-cCCCCC--------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHh
Q 043730 177 DSVSVSYLQLYMETIQD-LLDPAN--------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGE 237 (480)
Q Consensus 177 ~~V~vS~~EIynE~v~D-LL~~~~--------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~ 237 (480)
.-|.+.+-.+..+.+-. |+...+ ......+....|.+++.++......-...++++|+.+.
T Consensus 249 pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~ 318 (534)
T TIGR01817 249 PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGE 318 (534)
T ss_pred CeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCc
Confidence 12333333332222211 221110 11112233345777888877777666667777776654
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.80 E-value=0.98 Score=47.29 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=32.8
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccC----CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDG----YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKTyTm 147 (480)
.+.||.|-+-+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 466777766655555566555555543 23322 2345888999999999986
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=75.67 E-value=1 Score=46.65 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=31.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc--CC--ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
.+.||.+.+-+..-+++.+.+..|+.. ..+. |. ...++-||++|+|||++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 456777776655445555555444432 1222 21 335889999999999987
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.19 E-value=45 Score=31.73 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 403 EFDYKSLSRRLEIQLDKLIVENERQQKAFDDEVERI 438 (480)
Q Consensus 403 ~~~~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~ 438 (480)
.+.......+++.++.+++.++.......++...++
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l 123 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEM 123 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555667788888888877776555544443333
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=75.19 E-value=1.2 Score=38.05 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999997
No 106
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.15 E-value=1 Score=42.48 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999998
No 107
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=74.37 E-value=1.7 Score=40.87 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=16.2
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|..++.--. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 444553333 4566899999999997
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.28 E-value=3.2 Score=44.19 Aligned_cols=49 Identities=27% Similarity=0.459 Sum_probs=28.5
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHH-hcc--CC--ceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVES-VLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~-~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
+|+.|.+-+..-+++.+.+..|+... .+. |. ...++-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 45666554444455555554454432 222 21 224777999999999997
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.21 E-value=1.7 Score=39.10 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..-|.+++.. ++++. ..++..|++|||||.++
T Consensus 10 ~~~Q~~~~~~--------~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 10 RPYQKEAIEA--------LLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred CHHHHHHHHH--------HHcCC-CcEEEECCCCCchhHHH
Confidence 4456555543 33332 34566789999999987
No 110
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=74.12 E-value=2.6 Score=46.06 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=65.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhh-----
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILAD----- 171 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~----- 171 (480)
.|.||.+++....-..+.+. +.. +...+..|+-+|.+||||++.- +++...|..
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~s~~pVLI~GE~GTGKe~~A---------------~~IH~~~~~~~~~~ 273 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQT-----ILL-YARSSAAVLIQGETGTGKELAA---------------QAIHREYFARHDAR 273 (538)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCCCHHHHH---------------HHHHHhhccccccc
Confidence 46777777754432233222 222 4567889999999999999875 333333211
Q ss_pred -cCCCCccEEEEEEeEeechhcc-cCCCC---------CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcc
Q 043730 172 -VSLESDSVSVSYLQLYMETIQD-LLDPA---------NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHR 240 (480)
Q Consensus 172 -~~~~~~~V~vS~~EIynE~v~D-LL~~~---------~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R 240 (480)
......-|.+.|-.+..+.+-. |+... .......+....|.+++.++.+.+..-...++++|+.+.-.|
T Consensus 274 S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 274 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred CccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 0111112333333222222222 22210 012233444556888888888888777777888887655443
No 111
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.89 E-value=4.2 Score=40.35 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=22.9
Q ss_pred hHH-HhccCCceeEEecCCCCCCccccc
Q 043730 121 VVE-SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~-~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
||. ++-+||.-.|+|.|.||.|||..|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 443 345899999999999999999987
No 112
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=73.82 E-value=13 Score=41.83 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=20.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 699999999999999999997
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=73.73 E-value=1.2 Score=37.66 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999986
No 114
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=73.57 E-value=14 Score=41.87 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=20.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 699999999999999999997
No 115
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.46 E-value=2.2 Score=43.17 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=25.8
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+||.+.+ |+++.+.+ ...+-.|....++-||++|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~L----~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVERL----SRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHHH----HHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4777764 44544442 22222344335788999999999987
No 116
>PHA00729 NTP-binding motif containing protein
Probab=73.43 E-value=2.4 Score=40.98 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=21.8
Q ss_pred hhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+++.+..|--..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 344566555433357999999999999986
No 117
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.11 E-value=8.3 Score=39.83 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.1
Q ss_pred ccCCceeEEecCCCCCCccccc
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm 147 (480)
-.|+.-++++.|+.|+|||.-+
T Consensus 17 KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred hcCCceEEEEecCCCccHHHHH
Confidence 3799999999999999999876
No 118
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=72.52 E-value=2.9 Score=43.38 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhcc----CCceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLD----GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~----G~n~ti~aYGqtgSGKTyTm 147 (480)
..++.||.+.+..---..+.+.++-.+.++++. -.---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 356788888776666567777777777777663 23345778999999999984
No 119
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=72.43 E-value=8.9 Score=43.21 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=20.2
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 699999999999999999998
No 120
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=72.42 E-value=11 Score=42.55 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.5
Q ss_pred hHHHhc-cCCceeEEecCCCCCCccccc
Q 043730 121 VVESVL-DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l-~G~n~ti~aYGqtgSGKTyTm 147 (480)
....++ .|.|-||+.-|.+|||||.+.
T Consensus 76 Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 76 AYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 334444 599999999999999999997
No 121
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=72.38 E-value=2 Score=44.00 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=18.7
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++..++.+. ..|+..|.||||||.+|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 3444444432 33677899999999998
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.01 E-value=37 Score=38.23 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=10.5
Q ss_pred hhhhhHHHhccCCce
Q 043730 117 VAKPVVESVLDGYNG 131 (480)
Q Consensus 117 ~~~plv~~~l~G~n~ 131 (480)
++..||...|.|+..
T Consensus 73 IAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 73 IAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHhcCCcC
Confidence 455677777888764
No 123
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.93 E-value=2.2 Score=40.62 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=14.0
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5558899999999999985
No 124
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=71.87 E-value=1.3 Score=46.55 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=35.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc--C--CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKTyTm 147 (480)
.++|+.|-+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 567888888766656666666556553 3443 2 2456888999999999987
No 125
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=71.10 E-value=1.4 Score=37.02 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999998
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=71.04 E-value=3.2 Score=46.49 Aligned_cols=46 Identities=30% Similarity=0.543 Sum_probs=32.7
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
|....-|.|.-+|..-|+.+ ++.+-+|.... ..+|.|||||||||.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-~l~Gvtgs~kt~~~a 47 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKL----VEGLTDGEKHQ-TLLGVTGSGKTFTMA 47 (655)
T ss_pred ceeccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEECCCCcHHHHHHH
Confidence 44555688888998887764 44445564232 378999999999984
No 127
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=70.64 E-value=2.2 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=18.6
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++..++.. ...+.-.|++|||||.+|
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 344444543 234667799999999987
No 128
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=70.59 E-value=2 Score=43.76 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=18.2
Q ss_pred hHHHhcc-CCceeEEecCCCCCCccccc
Q 043730 121 VVESVLD-GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~-G~n~ti~aYGqtgSGKTyTm 147 (480)
++..++. +. .|+-.|.||||||.+|
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll 161 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHH
Confidence 3444443 44 4678899999999998
No 129
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=70.28 E-value=1.6 Score=43.25 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.0
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.++.++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6677778889999999998
No 130
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=70.06 E-value=18 Score=40.74 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=20.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 699999999999999999997
No 131
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.02 E-value=2.6 Score=36.91 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=12.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+--.|.||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 3445699999999985
No 132
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=69.81 E-value=1.6 Score=41.03 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=12.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-++.+|.||||||.+|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5788999999999998
No 133
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.69 E-value=4 Score=42.74 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.2
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.49 E-value=2.9 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.5
Q ss_pred cCC-ceeEEecCCCCCCccccc
Q 043730 127 DGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~-n~ti~aYGqtgSGKTyTm 147 (480)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 443 456677999999999987
No 135
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=69.34 E-value=5 Score=38.77 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCCCChHHHHhhhhhhhHHHhcc-C-CceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLD-G-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~-G-~n~ti~aYGqtgSGKTyTm 147 (480)
|++-..|+++-... +.+++.+.. | .=..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 44456788888764 667777654 2 2345788999999998764
No 136
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.24 E-value=2.5 Score=43.21 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.7
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..+..+. +.|+-.|.||||||+++
T Consensus 165 ~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 165 FLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 344445554 77888999999999997
No 137
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=68.91 E-value=3.8 Score=41.81 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=59.1
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCccE
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDSV 179 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~V 179 (480)
||.+.+.+..-..+.+.+ ..+ ...+.-|+-+|.+||||++.- +++...-. .....-|
T Consensus 5 ~~~liG~S~~~~~~~~~i-----~~~-a~~~~pVlI~GE~GtGK~~lA---------------~~iH~~s~--r~~~pfv 61 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV-----SRL-APLDKPVLIIGERGTGKELIA---------------SRLHYLSS--RWQGPFI 61 (326)
T ss_pred cCccEECCHHHHHHHHHH-----HHH-hCCCCCEEEECCCCCcHHHHH---------------HHHHHhCC--ccCCCeE
Confidence 556666544444444432 222 255777888999999999875 22221100 0111123
Q ss_pred EEEEEeEeechhc-ccCCCC--------CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHh
Q 043730 180 SVSYLQLYMETIQ-DLLDPA--------NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGE 237 (480)
Q Consensus 180 ~vS~~EIynE~v~-DLL~~~--------~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~ 237 (480)
.+.|-.+..+.+- +|+... .......+....|.+++.++......-...+..+|+.+.
T Consensus 62 ~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred EEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 3333333322221 122211 011222344456778888888777766777777776654
No 138
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=67.89 E-value=3.2 Score=38.57 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=17.5
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+++|.| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 344455877 567789999999873
No 139
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=67.84 E-value=2 Score=37.48 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=13.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999986
No 140
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.84 E-value=49 Score=35.33 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 410 SRRLEIQLDKLIVENERQQKAFDDEVERIHL 440 (480)
Q Consensus 410 ~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~ 440 (480)
++.+..+.+.|++|++++++...+--.++..
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3445555666666666655544443334433
No 141
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=67.48 E-value=19 Score=40.73 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=20.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 599999999999999999997
No 142
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=67.42 E-value=2.2 Score=43.86 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.5
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++..++. ....|+..|.||||||.+|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2334677899999999998
No 143
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=66.93 E-value=4.3 Score=44.22 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=62.8
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE 175 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~ 175 (480)
..+.||.+++....-..+.+.+ .. +...+.-|+-+|.+||||++.- +++... . ....
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA---------------~aiH~~-s-~r~~ 255 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA---------------YACHLR-S-PRGK 255 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH---------------HHHHHh-C-CCCC
Confidence 4678999988654434444332 22 2346777999999999999985 222211 0 0011
Q ss_pred CccEEEEEEeEeechhc-ccCCCCC--------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHh
Q 043730 176 SDSVSVSYLQLYMETIQ-DLLDPAN--------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGE 237 (480)
Q Consensus 176 ~~~V~vS~~EIynE~v~-DLL~~~~--------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~ 237 (480)
..-+.+.|-.+..+.+- .|+...+ ......+....|.+++.++.+....-...+.++|+.+.
T Consensus 256 ~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 256 KPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 326 (520)
T ss_pred CCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 11233443333322221 1222111 11112333345778888888777666667777776654
No 144
>PTZ00424 helicase 45; Provisional
Probab=66.84 E-value=2.9 Score=43.40 Aligned_cols=25 Identities=44% Similarity=0.777 Sum_probs=19.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566789885 45689999999864
No 145
>PRK10536 hypothetical protein; Provisional
Probab=66.50 E-value=3.4 Score=40.76 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=29.3
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|.|-.|-+-+..|..... .+.+ +.-++..|++||||||..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hhcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 34666667777666665444 2223 347899999999999986
No 146
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=66.44 E-value=3.2 Score=44.23 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=18.8
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| ++..++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455678888 67778999999976
No 147
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=66.38 E-value=2.7 Score=38.75 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.0
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999986
No 148
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=4.2 Score=41.78 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=49.2
Q ss_pred eecccCCCCCChHHHHhhhhhhhHH-Hhcc--CCce--eEEecCCCCCCcccccccCCCCC-------------CCCcch
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVE-SVLD--GYNG--TVMAYGQTGTGKTFTLGRLGDED-------------TSSRGI 160 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~n~--ti~aYGqtgSGKTyTm~g~~~~~-------------~~~~Gi 160 (480)
+|+.|=+-+..-++|.+.+--||.+ ..|+ |..- .|+-||+.|+|||-.---..... ..--|=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 4556655555567788888777764 3443 5543 68999999999997530000000 000122
Q ss_pred hHHHHHHHHhhcCCCCcc
Q 043730 161 MVRSMEDILADVSLESDS 178 (480)
Q Consensus 161 i~r~~~~lf~~~~~~~~~ 178 (480)
=+|.++++|.....+..+
T Consensus 229 GaRlVRelF~lArekaPs 246 (406)
T COG1222 229 GARLVRELFELAREKAPS 246 (406)
T ss_pred chHHHHHHHHHHhhcCCe
Confidence 379999999987766543
No 149
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=66.20 E-value=2.6 Score=41.58 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=15.2
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346789999999999875
No 150
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=66.13 E-value=3.3 Score=41.34 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=23.9
Q ss_pred CChHHHHhhhhhhhHHHhcc--CCceeEEecCCCCCCccccc
Q 043730 108 ASQKRVYEVVAKPVVESVLD--GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~--G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+++.+.+ ..++..... +....++-||++|+|||+..
T Consensus 7 iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 7 IGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4566666653 334433221 22234677999999999987
No 151
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=66.02 E-value=5.4 Score=43.30 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=62.5
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCcc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDS 178 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~ 178 (480)
.|+.+.+....=..+++.+ .. +...+..|+-+|.+||||++.- +++...... ....-
T Consensus 185 ~~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~A---------------~~ih~~s~r--~~~p~ 241 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELVA---------------RAIHAASPR--ADKPL 241 (509)
T ss_pred cCCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHHH---------------HHHHHhCCc--CCCCe
Confidence 6677777654444444443 22 3566889999999999999885 222221111 11122
Q ss_pred EEEEEEeEeechhc-ccCCCCC--------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHh
Q 043730 179 VSVSYLQLYMETIQ-DLLDPAN--------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGE 237 (480)
Q Consensus 179 V~vS~~EIynE~v~-DLL~~~~--------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~ 237 (480)
|.+.|-.+..+.+- .|+...+ ......+....|.+++.++......-...+.++|+.+.
T Consensus 242 v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~ 309 (509)
T PRK05022 242 VYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGE 309 (509)
T ss_pred EEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCC
Confidence 44444443322221 1222110 11112333456778888888877766677777776554
No 152
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.90 E-value=2.6 Score=42.11 Aligned_cols=16 Identities=50% Similarity=0.671 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666699999999998
No 153
>PRK13764 ATPase; Provisional
Probab=65.83 E-value=2.9 Score=46.20 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.8
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+..|+||||||+++
T Consensus 257 ~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFA 274 (602)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445899999999999998
No 154
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.67 E-value=3.5 Score=43.93 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=55.8
Q ss_pred HHHhccCCceeEEecCCCCCCccccccc--------CCCCC------CCCcchh---H--HHHHHHHhhcCCCCccEEEE
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTLGR--------LGDED------TSSRGIM---V--RSMEDILADVSLESDSVSVS 182 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm~g--------~~~~~------~~~~Gii---~--r~~~~lf~~~~~~~~~V~vS 182 (480)
|..+.+|.+. +|.+|||||||+.... .+..+ ...++.+ | -.+.+||++...-.+.-.+-
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~ 182 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMK 182 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccce
Confidence 3344566664 8999999999998511 00100 0111111 1 23567887766655666677
Q ss_pred EEeEeec-hhcccCCCCCCcceee--------ecCCCCceecCCCeEEEecCHHHHHHHHH
Q 043730 183 YLQLYME-TIQDLLDPANDNISIV--------EDPKTGDVSLPGATLVQIRDQQSFTELLR 234 (480)
Q Consensus 183 ~~EIynE-~v~DLL~~~~~~l~i~--------e~~~~g~~~v~gl~~~~v~s~~e~~~ll~ 234 (480)
.+.+|+. .+.+.+........|. .--..|.+.+.++..+.+ +|+-++|+
T Consensus 183 ~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL---DEADrMlD 240 (482)
T KOG0335|consen 183 SVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL---DEADRMLD 240 (482)
T ss_pred eeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe---cchHHhhh
Confidence 7778865 2322222111111111 111235677778876655 44445554
No 155
>PRK06547 hypothetical protein; Provisional
Probab=65.66 E-value=4.3 Score=37.38 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=18.6
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..+..+.---|.-+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444444455666799999999975
No 156
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.56 E-value=3.3 Score=43.61 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=23.5
Q ss_pred ChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+.+... ..++...+-.+.-..++-||++|+|||+..
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 34455443 122333333455556777999999999987
No 157
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=65.44 E-value=2.6 Score=43.46 Aligned_cols=44 Identities=27% Similarity=0.482 Sum_probs=29.8
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|.|+.|-+. +++=.. ++..+.+-.-+.|+-+|.+|||||+.+
T Consensus 12 ~~~pf~~ivGq----~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----HHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 47889988774 443333 344444433345789999999999997
No 158
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=64.65 E-value=2.2 Score=37.21 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=13.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999997
No 159
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=64.22 E-value=3 Score=39.11 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.3
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
..-..+|..|+.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44567899999999999987
No 160
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=63.58 E-value=5.2 Score=41.81 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=23.8
Q ss_pred HHHHhhhhhhhHHHhccC----CceeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLDG----YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~G----~n~ti~aYGqtgSGKTyTm 147 (480)
...|.....-++.++.+- ...-|.-.|+||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444443 2566777899999999998
No 161
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.16 E-value=2.7 Score=35.52 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=13.3
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999986
No 162
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=62.98 E-value=4 Score=43.09 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=19.4
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| +++.++||||||.+
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3556678887 78889999999986
No 163
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.63 E-value=68 Score=36.93 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=7.9
Q ss_pred cCCCCCCccccc
Q 043730 136 YGQTGTGKTFTL 147 (480)
Q Consensus 136 YGqtgSGKTyTm 147 (480)
.+++.||.|.-+
T Consensus 213 ~~~s~sg~t~y~ 224 (782)
T PRK00409 213 HDQSSSGATLYI 224 (782)
T ss_pred eeEECCCCEEEE
Confidence 456777776665
No 164
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.43 E-value=5.5 Score=39.81 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=24.4
Q ss_pred hhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 115 EVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 115 ~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...+.||+ ..+.--+..+--||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 33455666 456666778889999999999987
No 165
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=62.21 E-value=33 Score=38.83 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=20.2
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999997
No 166
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=62.20 E-value=4.1 Score=42.89 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=18.9
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 44567789885 55669999999863
No 167
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=62.10 E-value=3.2 Score=40.78 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345778999999999997
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=61.99 E-value=4.4 Score=43.13 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=19.8
Q ss_pred cCCCCceeeEEEeeCCCCCChHHhHHHHHHHHH
Q 043730 358 SFGGTARTSLIVTIGPSPRHRGETASTILFGQR 390 (480)
Q Consensus 358 sLgGns~t~~I~~isp~~~~~~eTl~TL~fa~r 390 (480)
.|.-.....+|||++.... ++..|.+|-+
T Consensus 319 ~f~iP~Nl~IIgTMNt~Dr----s~~~lD~Alr 347 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADR----SLAVVDYALR 347 (459)
T ss_pred cccCCCCeEEEEecCcccc----chhhccHHHH
Confidence 3455678999999987764 3445666644
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.81 E-value=3.5 Score=42.95 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778999999999998
No 170
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=61.49 E-value=2.6 Score=41.43 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=11.7
Q ss_pred ecCCCCCCccccc
Q 043730 135 AYGQTGTGKTFTL 147 (480)
Q Consensus 135 aYGqtgSGKTyTm 147 (480)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3599999999999
No 171
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.89 E-value=1.1e+02 Score=32.36 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=6.8
Q ss_pred cCCCCCChHHHHhh
Q 043730 103 VFTESASQKRVYEV 116 (480)
Q Consensus 103 Vf~~~~~Q~~vf~~ 116 (480)
=|...++-..+|++
T Consensus 121 kFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 121 KFRDQADADTFYEE 134 (493)
T ss_pred EeccchhHHHHHHH
Confidence 34444554455544
No 172
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=60.74 E-value=5 Score=42.85 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=19.0
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.|..+++|.| +++-.+||||||.+
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3556678988 57778999999987
No 173
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=60.74 E-value=1.6 Score=40.02 Aligned_cols=96 Identities=22% Similarity=0.268 Sum_probs=55.3
Q ss_pred cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC-CCccEEEEEEeEeechhc-ccCCCC------
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL-ESDSVSVSYLQLYMETIQ-DLLDPA------ 198 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~V~vS~~EIynE~v~-DLL~~~------ 198 (480)
..++..|+-+|.+||||+..- +.|.+.... ...-|.|.+-.+..|.+- .|+...
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA------------------~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~ 80 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA------------------RAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTG 80 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH------------------HHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTT
T ss_pred hCCCCCEEEEcCCCCcHHHHH------------------HHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccc
Confidence 478899999999999999874 222322221 122244444443333322 222211
Q ss_pred --CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcc
Q 043730 199 --NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHR 240 (480)
Q Consensus 199 --~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R 240 (480)
....-..+....|.+++.++..........++++|+.+.-.|
T Consensus 81 ~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 81 ARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp TSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred cccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 112234455567888999998888888888888988765444
No 174
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=60.68 E-value=4.9 Score=43.76 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=22.2
Q ss_pred hhhhHHHhccCCc--eeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
++..++..+.|.. ..++-+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 3455666555543 46788999999999997
No 175
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=60.36 E-value=3.6 Score=31.31 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 176
>PRK04328 hypothetical protein; Provisional
Probab=60.22 E-value=12 Score=36.62 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=22.7
Q ss_pred hhhHHHhccC---CceeEEecCCCCCCcccc
Q 043730 119 KPVVESVLDG---YNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 119 ~plv~~~l~G---~n~ti~aYGqtgSGKTyT 146 (480)
-+-++.++.| ....++-+|.+|+|||..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3557888876 578889999999999865
No 177
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=59.91 E-value=3 Score=44.82 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043730 412 RLEIQLDKLIVEN----------ERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYMESVKKLEER 478 (480)
Q Consensus 412 ~l~~~~~~l~~e~----------~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~ 478 (480)
.|+.||..|++.+ |+.....+++..+|..++|+++++.|+.++.+.+ +|-.+....+.+|-.+||.
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~-eKd~qmksII~RL~~vEeE 448 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQE-EKDSQMKSIISRLMAVEEE 448 (495)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhh-hhHHHHHHHHhhhhhhhhh
Confidence 3555665555433 3444444556667778899999988876654322 2222333444444444443
No 178
>PHA02244 ATPase-like protein
Probab=59.68 E-value=7.4 Score=40.45 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=25.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...||.-|-..+ ..+......+...+-.|.+. +-+|++|+|||+..
T Consensus 91 l~~~d~~~ig~s---p~~~~~~~ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 91 ISGIDTTKIASN---PTFHYETADIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred hhhCCCcccCCC---HHHHHHHHHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 344555553332 23332223333334456665 45899999999986
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=59.60 E-value=4.3 Score=43.90 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=29.2
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc--C--CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKTyTm 147 (480)
..+||.|.+.+...+++.+ ++..+-. ..+. | ..-.++-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 5678888876554444443 2222110 0111 1 2235888999999999986
No 180
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=59.49 E-value=3.4 Score=41.59 Aligned_cols=15 Identities=47% Similarity=0.769 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999986
No 181
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=59.40 E-value=7.2 Score=39.96 Aligned_cols=27 Identities=48% Similarity=0.688 Sum_probs=21.1
Q ss_pred hhHHHhccCCc---eeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYN---GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n---~ti~aYGqtgSGKTyTm 147 (480)
|.++..+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777787764 46665 99999999988
No 182
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.37 E-value=90 Score=35.85 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=6.5
Q ss_pred eeEEEEeCCC
Q 043730 294 SKLVVVDLAG 303 (480)
Q Consensus 294 s~L~lVDLAG 303 (480)
..|.|+|=.|
T Consensus 403 ~sLvLlDE~g 412 (771)
T TIGR01069 403 NSLVLFDELG 412 (771)
T ss_pred CcEEEecCCC
Confidence 4577888554
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=59.36 E-value=6.8 Score=44.17 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=60.7
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESD 177 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~ 177 (480)
+.|+.+++....-..+.+.+ .. +...+..|+-+|.+|||||+.- +++...-. .....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~lA---------------~~ih~~s~--r~~~~ 429 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELIA---------------RAIHNLSG--RNNRR 429 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHHH---------------HHHHHhcC--CCCCC
Confidence 56777776544444444332 22 3456778999999999999874 11111100 01111
Q ss_pred cEEEEEEeEeechhc-ccCCCCC--------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcc
Q 043730 178 SVSVSYLQLYMETIQ-DLLDPAN--------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHR 240 (480)
Q Consensus 178 ~V~vS~~EIynE~v~-DLL~~~~--------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R 240 (480)
-+.+.|-.+..+.+. +|+...+ ......+....|.+++.++......-...+.++|+.+.-.|
T Consensus 430 ~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~ 501 (686)
T PRK15429 430 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 501 (686)
T ss_pred eEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEe
Confidence 233333332211111 1222100 11112233345778888888777777777888887664333
No 184
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=59.30 E-value=1.3e+02 Score=27.62 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 043730 434 EVERIHLEAQNRI 446 (480)
Q Consensus 434 e~~~~~~~~q~~~ 446 (480)
+++.++.+++..+
T Consensus 88 eie~l~~~L~~ei 100 (177)
T PF07798_consen 88 EIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 185
>PLN03025 replication factor C subunit; Provisional
Probab=59.12 E-value=6.2 Score=39.97 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||+.|+|||++.
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34666999999999997
No 186
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.81 E-value=4.4 Score=41.10 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=14.2
Q ss_pred ceeEEecCCCCCCcccc
Q 043730 130 NGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyT 146 (480)
-+-|+..|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578899999999984
No 187
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=58.77 E-value=7.5 Score=38.94 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.
T Consensus 7 y~~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 7 YEPYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHH
Confidence 34567787776665 344456765 455669999999986
No 188
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=58.77 E-value=7.5 Score=38.94 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=26.0
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+...|.++-+.+ .+.+-+|.+ ++.=.+||+|||.+.
T Consensus 7 y~~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 7 YEPYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHH
Confidence 34567787776665 344456765 455669999999986
No 189
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=58.66 E-value=8.5 Score=42.97 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=59.8
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES 176 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~ 176 (480)
.+.||.+.+.+. .+..+... +..+. ..+..|+-+|.+||||++.- +++...-. ....
T Consensus 321 ~~~~~~l~g~s~----~~~~~~~~-~~~~a-~~~~pvli~Ge~GtGK~~~A---------------~~ih~~s~--r~~~ 377 (638)
T PRK11388 321 SHTFDHMPQDSP----QMRRLIHF-GRQAA-KSSFPVLLCGEEGVGKALLA---------------QAIHNESE--RAAG 377 (638)
T ss_pred cccccceEECCH----HHHHHHHH-HHHHh-CcCCCEEEECCCCcCHHHHH---------------HHHHHhCC--ccCC
Confidence 567888776543 33333222 23332 46777999999999999874 11111100 0111
Q ss_pred ccEEEEEEeEeechh-cccCCCC-----CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhh
Q 043730 177 DSVSVSYLQLYMETI-QDLLDPA-----NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEA 238 (480)
Q Consensus 177 ~~V~vS~~EIynE~v-~DLL~~~-----~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~ 238 (480)
.-|.+.+-.+..+.+ -+|+... .......+....|.+++.++......-...++++|+.+.-
T Consensus 378 pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 378 PYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVI 445 (638)
T ss_pred CeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcE
Confidence 112333222222211 1233211 1111223334467788888887777666677777765543
No 190
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=58.45 E-value=5.6 Score=41.52 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=26.0
Q ss_pred ChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 109 SQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.|+.+... .+|+=.-+-.|.-...+-||+.|+|||..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35666654 24444444467777889999999999985
No 191
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=58.30 E-value=7.4 Score=39.39 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=55.0
Q ss_pred CCCCceeecccCCCCCChHHHHhhhhhhhHHHhc-c--CCce--eEEecCCCCCCcccc-------ccc------CCCCC
Q 043730 93 WDSDTYEFDEVFTESASQKRVYEVVAKPVVESVL-D--GYNG--TVMAYGQTGTGKTFT-------LGR------LGDED 154 (480)
Q Consensus 93 ~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l-~--G~n~--ti~aYGqtgSGKTyT-------m~g------~~~~~ 154 (480)
.++..|+||.|-+-.-.-.++-+.+.-|+++..+ . |... -+.-||+.|+|||+- |+- .+.-.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 3556789999988755556666777778876544 2 4332 468899999999995 310 01111
Q ss_pred CCCcchhHHHHHHHHhhcCCCC
Q 043730 155 TSSRGIMVRSMEDILADVSLES 176 (480)
Q Consensus 155 ~~~~Gii~r~~~~lf~~~~~~~ 176 (480)
....|=-.|.+++.|.......
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVI 225 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhC
Confidence 2234556799999998776543
No 192
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=58.05 E-value=8.2 Score=39.23 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=48.6
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhc-cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhh-cCCCCc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVL-DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILAD-VSLESD 177 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~-~~~~~~ 177 (480)
|-.|=..+.++.+-=..+...+|+.+| .||. .|.||..|.|||+.+. ..+|.--+-.++|.. ......
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL--------~l~IalaaG~~lfG~~v~epGk 129 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL--------YLCIALAAGKNLFGNKVKEPGK 129 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH--------HHHHHHHhhHHHhcccccCCCe
Confidence 336665555555433445566777666 5665 4789999999999872 125555555677763 322222
Q ss_pred cEEEEEEeEeechh
Q 043730 178 SVSVSYLQLYMETI 191 (480)
Q Consensus 178 ~V~vS~~EIynE~v 191 (480)
-++|| +|.|.|.+
T Consensus 130 vlyvs-lEl~re~~ 142 (402)
T COG3598 130 VLYVS-LELYREDI 142 (402)
T ss_pred EEEEE-eccChHHH
Confidence 34444 67776644
No 193
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.85 E-value=8.3 Score=39.24 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|.-.|++|+|||.|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346677799999999998
No 194
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=57.81 E-value=84 Score=30.27 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 417 LDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQME 467 (480)
Q Consensus 417 ~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~ 467 (480)
+...+.+++.|.+...+++..|....+.+...-..++...+++|+...|..
T Consensus 136 l~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~ 186 (221)
T PF10376_consen 136 LEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEA 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 333444556666667777777766555544433334444455555544443
No 195
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.73 E-value=96 Score=35.64 Aligned_cols=12 Identities=50% Similarity=0.603 Sum_probs=5.5
Q ss_pred cCCCCCCccccc
Q 043730 136 YGQTGTGKTFTL 147 (480)
Q Consensus 136 YGqtgSGKTyTm 147 (480)
.|+.|+|||..|
T Consensus 328 tGpNg~GKSTlL 339 (771)
T TIGR01069 328 TGPNTGGKTVTL 339 (771)
T ss_pred ECCCCCCchHHH
Confidence 344444444443
No 196
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=57.69 E-value=6.7 Score=39.16 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=16.7
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999987
No 197
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.63 E-value=68 Score=30.91 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 443 QNRISEVERNFADALEKEKLKCQMEYMESVKKLE 476 (480)
Q Consensus 443 q~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~ 476 (480)
....++.+...+..+|-+..-+|+++++++..|+
T Consensus 184 d~iveEeeed~~l~reieeidEQi~~~kkvekl~ 217 (264)
T KOG3032|consen 184 DSIVEEEEEDAALTREIEEIDEQISYKKKVEKLK 217 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555444443
No 198
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=57.60 E-value=8.2 Score=43.71 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=24.8
Q ss_pred hhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 117 VAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 117 ~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++++-+|.+-.+++. .||||||||-
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTA 202 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTA 202 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeH
Confidence 35667888889999977776 7999999994
No 199
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.59 E-value=1.1e+02 Score=33.81 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHhhcC
Q 043730 158 RGIMVRSMEDILADVS 173 (480)
Q Consensus 158 ~Gii~r~~~~lf~~~~ 173 (480)
.|.|.+....|=..+.
T Consensus 163 h~av~~~~reIee~L~ 178 (652)
T COG2433 163 HGAVKRVVREIEEKLD 178 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677777766655544
No 200
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=57.54 E-value=6.6 Score=39.75 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.4
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-...-+.-++-||+.|||||.+|
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHH
Confidence 334577788999999999999998
No 201
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=57.38 E-value=4.4 Score=39.00 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=16.4
Q ss_pred ceeEEecCCCCCCcccccc
Q 043730 130 NGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~ 148 (480)
...++-||..|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999999974
No 202
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=57.26 E-value=6.7 Score=44.13 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=19.9
Q ss_pred hhhhHHHhcc-----CCceeEEecCCCCCCcccccc
Q 043730 118 AKPVVESVLD-----GYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 118 ~~plv~~~l~-----G~n~ti~aYGqtgSGKTyTm~ 148 (480)
+..+++.+.. |.+..++.. +||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 3445555555 445555554 89999999993
No 203
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=57.04 E-value=4.4 Score=35.52 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467899999999987
No 204
>PF05729 NACHT: NACHT domain
Probab=56.99 E-value=5 Score=35.45 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999998
No 205
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=56.83 E-value=7.6 Score=38.99 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.1
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56778999999999999998
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=56.81 E-value=10 Score=39.22 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=27.0
Q ss_pred ec-ccCCCCCChHHHHhhhhhhhHHHhccC---CceeEEecCCCCCCccccc
Q 043730 100 FD-EVFTESASQKRVYEVVAKPVVESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD-~Vf~~~~~Q~~vf~~~~~plv~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
|| .||+. ++.-+.++.- +.....| .+-.+.-.|++|||||...
T Consensus 49 F~~~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 55 67774 4444444432 3333343 4566788999999999874
No 207
>PRK10780 periplasmic chaperone; Provisional
Probab=56.64 E-value=1.4e+02 Score=27.19 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 405 DYKSLSRRLEIQLDKLIVENERQQKAFDDEVERI 438 (480)
Q Consensus 405 ~~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~ 438 (480)
..+....+|+.+......+++...+.++.+.+.+
T Consensus 40 ~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 40 QRTGVSKQLENEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566555555555555555444444433
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=56.19 E-value=7.8 Score=38.12 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=19.3
Q ss_pred hhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.++..+..|.+. +-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 3445555566655 55899999999986
No 209
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=56.17 E-value=6.4 Score=36.93 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHhccCC---ceeEEecCCCCCCccccc
Q 043730 123 ESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567889999999999875
No 210
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.69 E-value=7 Score=39.32 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=51.0
Q ss_pred eecccCCCCCChHHHHhhhhhhh-HHHhccCCc---eeEEecCCCCCCccccc-----------ccCCCCC--CCCcchh
Q 043730 99 EFDEVFTESASQKRVYEVVAKPV-VESVLDGYN---GTVMAYGQTGTGKTFTL-----------GRLGDED--TSSRGIM 161 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~pl-v~~~l~G~n---~ti~aYGqtgSGKTyTm-----------~g~~~~~--~~~~Gii 161 (480)
..+.|-+-+..-+.+=+.++-|+ ..++|.|.- ..|+-||+.|+||+|.- +.....+ ..=-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 34556665566667777777775 367787765 57999999999999964 1100000 0001445
Q ss_pred HHHHHHHHhhcCCCCcc
Q 043730 162 VRSMEDILADVSLESDS 178 (480)
Q Consensus 162 ~r~~~~lf~~~~~~~~~ 178 (480)
.+.+..||........+
T Consensus 211 EkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPS 227 (439)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 67888999877665544
No 211
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=55.59 E-value=7.4 Score=37.12 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=23.8
Q ss_pred hhhhHHHhccC---CceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
+-+-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567888875 4567889999999999986
No 212
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=55.34 E-value=3.5 Score=41.15 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.2
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999976
No 213
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=54.97 E-value=8.1 Score=41.81 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCC--------CCCcchhHHHH
Q 043730 94 DSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDED--------TSSRGIMVRSM 165 (480)
Q Consensus 94 ~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~--------~~~~Gii~r~~ 165 (480)
....|+||.+.+....=.++-+ ++ .-..+.+++|+-+|.||+||----.+-.... .-+.|-||-.+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 3467999999987543322222 12 3467999999999999999964321100000 11224444333
Q ss_pred --HHHHhhcCCCCccEEEEEEeEeechhcccCCCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcc
Q 043730 166 --EDILADVSLESDSVSVSYLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHR 240 (480)
Q Consensus 166 --~~lf~~~~~~~~~V~vS~~EIynE~v~DLL~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R 240 (480)
.+||..-... ++ = +..+.+.-..+-...|.+++..+.+.+..=...++++|+...-.|
T Consensus 312 lESELFGye~GA-FT---------------G-A~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 312 LESELFGYEKGA-FT---------------G-ASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHhCcCCcc-cc---------------c-cccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEe
Confidence 2344322110 00 0 001112334455566888888888888877788888887755444
No 214
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=54.74 E-value=6.5 Score=43.91 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=19.6
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.+ +++.++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678877 677889999999874
No 215
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=54.70 E-value=6.7 Score=42.85 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=28.1
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+||.+++.+.. - +.+...++.....-|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~----i----~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG----I----KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH----H----HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 457888775432 2 22333345566677888999999999874
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=54.50 E-value=14 Score=39.44 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=15.9
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999998
No 217
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.41 E-value=6.7 Score=46.68 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=18.7
Q ss_pred hHHHhccCCceeEEecCCCCCCcccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm~ 148 (480)
+++.+-+|....++. .+||||||+||.
T Consensus 425 i~~a~~~g~r~~Ll~-maTGSGKT~tai 451 (1123)
T PRK11448 425 VEKAIVEGQREILLA-MATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHhccCCeEEE-eCCCCCHHHHHH
Confidence 344444676655554 799999999974
No 218
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.16 E-value=1e+02 Score=35.48 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=5.9
Q ss_pred eeEEEEeCCC
Q 043730 294 SKLVVVDLAG 303 (480)
Q Consensus 294 s~L~lVDLAG 303 (480)
..|.|+|=.|
T Consensus 408 ~sLvLlDE~~ 417 (782)
T PRK00409 408 NSLVLFDELG 417 (782)
T ss_pred CcEEEecCCC
Confidence 3477777444
No 219
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=54.10 E-value=6.5 Score=39.04 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=21.5
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|..+|=|..+ ..-|...+..+ +.. +--++-.|++|+|||-++
T Consensus 9 ~~~~~VpT~d-t~r~~~ll~~l----~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 9 FNEILVPTVD-TVRYSYLLDLL----LSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp ----T---HH-HHHHHHHHHHH----HHC-TEEEEEESSTTSSHHHHH
T ss_pred cceEEeCcHH-HHHHHHHHHHH----HHc-CCcEEEECCCCCchhHHH
Confidence 4455555433 22333333333 332 445688999999999988
No 220
>PRK05580 primosome assembly protein PriA; Validated
Probab=54.05 E-value=7.2 Score=43.99 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=25.6
Q ss_pred cccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 101 DEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 101 D~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.-+.....|+++++.+... . ++ ..++.+|+||||||.+.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHH
Confidence 34444556677666654322 1 33 34789999999999875
No 221
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=53.93 E-value=5.5 Score=40.94 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=21.2
Q ss_pred hhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..++..++.+. +.|+-.|.||||||.+|
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 34555566543 67888899999999987
No 222
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=53.65 E-value=7.6 Score=39.46 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 35778999999999997
No 223
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.57 E-value=1.1e+02 Score=34.66 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=5.2
Q ss_pred HHHHHHhhhC
Q 043730 471 SVKKLEERCC 480 (480)
Q Consensus 471 ~~~~l~e~~~ 480 (480)
++++|++|||
T Consensus 452 k~qqls~kl~ 461 (1118)
T KOG1029|consen 452 KLQQLSGKLQ 461 (1118)
T ss_pred HHHHHhhhhh
Confidence 3455555554
No 224
>PRK04195 replication factor C large subunit; Provisional
Probab=53.56 E-value=9.8 Score=40.97 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=21.1
Q ss_pred hhhHHHhccCC-ceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G~-n~ti~aYGqtgSGKTyTm 147 (480)
...+.....|. .-.++-||++|+|||++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34445544554 456888999999999986
No 225
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=53.42 E-value=7.4 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 444457788999999999986
No 226
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=53.37 E-value=5.5 Score=35.14 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999999885
No 227
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=53.13 E-value=6.6 Score=39.05 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=19.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999987
No 228
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.84 E-value=7.7 Score=41.60 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.9
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..+++|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567789875 55579999999863
No 229
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=52.75 E-value=16 Score=36.08 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=27.0
Q ss_pred eEEecCCCCCCccccc-----ccCCCCCCCCcchhHHHHHHHH
Q 043730 132 TVMAYGQTGTGKTFTL-----GRLGDEDTSSRGIMVRSMEDIL 169 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm-----~g~~~~~~~~~Gii~r~~~~lf 169 (480)
-|+.-|.+|||||..+ .|+---+.-.+.++|.+++-+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 3677899999999987 2332234445688998887665
No 230
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=52.35 E-value=12 Score=35.79 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=23.9
Q ss_pred HHHHhhhhhhhHHHhcc-CCceeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLD-GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~-G~n~ti~aYGqtgSGKTyTm 147 (480)
..+|..++.-+...+-. +..-.|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 44555555554443333 44556666799999999987
No 231
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.31 E-value=7.9 Score=42.72 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=19.5
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4566789998 456779999999773
No 232
>PF13173 AAA_14: AAA domain
Probab=52.12 E-value=6.4 Score=33.97 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999998
No 233
>CHL00176 ftsH cell division protein; Validated
Probab=51.76 E-value=7.3 Score=43.53 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.0
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999986
No 234
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=51.72 E-value=8.6 Score=42.84 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=29.7
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
-+||.+++. ...... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 467777764 333333 344555677778899999999999986
No 235
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.70 E-value=1.4e+02 Score=31.45 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 429 KAFDDEVERIHLEAQNRISEVERNFADALE 458 (480)
Q Consensus 429 ~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e 458 (480)
+.|++.+.++..-.|+.+..+...++...|
T Consensus 261 erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 261 ERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345666666666667777767666665544
No 236
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=51.68 E-value=8.1 Score=43.20 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=17.5
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|..++..- ..++-.|++|||||||+
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTL 190 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHH
Confidence 34444322 34568999999999997
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=51.66 E-value=15 Score=37.71 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=16.2
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467889999999999998
No 238
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=51.57 E-value=6.6 Score=35.86 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=13.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999974
No 239
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=51.50 E-value=8.4 Score=38.90 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=20.1
Q ss_pred hhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+++..++.+. ..++-.|.||||||..|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 45566666544 34566799999999987
No 240
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=51.36 E-value=5.9 Score=36.24 Aligned_cols=17 Identities=41% Similarity=0.769 Sum_probs=14.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999998
No 241
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=51.24 E-value=10 Score=36.42 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=22.7
Q ss_pred hhhhHHHhccCC---ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++.|- ...++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345577777643 667888899999999875
No 242
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.21 E-value=2e+02 Score=28.26 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 043730 385 ILFGQRAM 392 (480)
Q Consensus 385 L~fa~ra~ 392 (480)
+.|-+++.
T Consensus 23 ~~ykq~f~ 30 (333)
T KOG1853|consen 23 HEYKQHFL 30 (333)
T ss_pred HHHHHHHH
Confidence 33444443
No 243
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=51.13 E-value=17 Score=39.20 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=22.1
Q ss_pred hhHHHhccC---CceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
+=+|.++.| .+.+++.+|++|||||.-.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 446777765 3778999999999999764
No 244
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.06 E-value=6.5 Score=41.69 Aligned_cols=16 Identities=56% Similarity=0.677 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-.|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 245
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.02 E-value=1.3e+02 Score=25.42 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 421 IVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYME 470 (480)
Q Consensus 421 ~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~ 470 (480)
..+++.+...+-.++..|+..... -++.+-+..+|++.++..+...+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~---l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQE---LLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555443332 24556666677777766665443
No 246
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.75 E-value=1.4e+02 Score=32.05 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043730 411 RRLEIQLDKLIVENERQQK 429 (480)
Q Consensus 411 ~~l~~~~~~l~~e~~~~~~ 429 (480)
++++.++..|..+++.+++
T Consensus 69 k~~r~~~~~l~~~N~~l~~ 87 (472)
T TIGR03752 69 KELRKRLAKLISENEALKA 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555443
No 247
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=50.60 E-value=7.5 Score=44.20 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=29.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccCC----ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~----n~ti~aYGqtgSGKTyTm 147 (480)
.++||.|-+-+..-+.+.+.+..|+-. .+++.+ .-.|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777765544434444443333221 222222 245889999999999875
No 248
>PRK07261 topology modulation protein; Provisional
Probab=50.57 E-value=6.9 Score=35.81 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.3
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999886
No 249
>PRK00131 aroK shikimate kinase; Reviewed
Probab=50.52 E-value=7.4 Score=34.88 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=14.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-+|.+|||||+.-
T Consensus 6 ~i~l~G~~GsGKstla 21 (175)
T PRK00131 6 NIVLIGFMGAGKSTIG 21 (175)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 6899999999999984
No 250
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=50.26 E-value=12 Score=42.25 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=25.7
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+...|+.+...+.. +.-.+...-++..|+||||||...
T Consensus 260 f~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 260 FELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 3455556665554432 333455556889999999999864
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.91 E-value=13 Score=39.04 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=15.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 56888999999999998
No 252
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.87 E-value=8.9 Score=41.11 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=19.8
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..+..+++|.|..+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 35667789998654 559999999764
No 253
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=49.64 E-value=6.8 Score=42.78 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|..++.-. -..+--|+.|+|||||+
T Consensus 194 v~~~~~~k-~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 194 VSFAINNK-DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred HHHHhccC-CceEeeCCCCCCceeeH
Confidence 33333333 44566899999999997
No 254
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=49.44 E-value=12 Score=35.67 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=23.1
Q ss_pred hhhhHHHhccCC---ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
+-|-++.++.|- ...+.-+|.+|||||..+
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345578888643 457789999999999886
No 255
>PRK08118 topology modulation protein; Reviewed
Probab=49.24 E-value=7.6 Score=35.46 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999654
No 256
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=48.90 E-value=6.9 Score=41.21 Aligned_cols=18 Identities=44% Similarity=0.648 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 446789999999999887
No 257
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=48.87 E-value=14 Score=41.60 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 599999999999999999995
No 258
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=7.1 Score=41.60 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=17.2
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.-|.| ++.||+.|||||...
T Consensus 194 AAAGgHn--Ll~~GpPGtGKTmla 215 (490)
T COG0606 194 AAAGGHN--LLLVGPPGTGKTMLA 215 (490)
T ss_pred HHhcCCc--EEEecCCCCchHHhh
Confidence 3445555 688999999999986
No 259
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.13 E-value=7.6 Score=41.84 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=15.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..+.-.|++|+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46778899999999998
No 260
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=48.09 E-value=12 Score=40.78 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..++.|.|. ++..+||||||.+
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHH
Confidence 46667889874 6667999999965
No 261
>PHA02653 RNA helicase NPH-II; Provisional
Probab=47.89 E-value=13 Score=41.98 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=22.7
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
+-|.++=+. ++..+.+|.+ ++..|+||||||..
T Consensus 163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 345554443 4555667765 48899999999975
No 262
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=47.84 E-value=8 Score=34.00 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999975
No 263
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=47.60 E-value=12 Score=35.31 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.8
Q ss_pred hhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-+|.++.| + ...+.-+|++|+|||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 44567888864 3 446788999999999986
No 264
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=47.40 E-value=14 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.7
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 689999999999999999995
No 265
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=47.39 E-value=15 Score=41.37 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999995
No 266
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=47.35 E-value=15 Score=41.48 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.9
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999995
No 267
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=47.05 E-value=7.6 Score=44.52 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 455788899999999998
No 268
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.02 E-value=2.8e+02 Score=30.50 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043730 422 VENERQQKAFDDEVERIHLEAQNRI-SE-----------VERNFADALEKEKLKCQMEYMESVKKLEERC 479 (480)
Q Consensus 422 ~e~~~~~~~~~~e~~~~~~~~q~~~-~~-----------~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~~ 479 (480)
..++.+++.+++|+++++.++.... ++ ..+.|...--..-+.....|.|+|=+|+|-+
T Consensus 353 ~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455667777777777766654321 11 1122222111222445567888888888754
No 269
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=46.96 E-value=9.7 Score=39.58 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++.+|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578899999999986
No 270
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=46.81 E-value=8.7 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999764
No 271
>PHA02624 large T antigen; Provisional
Probab=46.80 E-value=13 Score=41.07 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=22.2
Q ss_pred hHHHhccCCce--eEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNG--TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~--ti~aYGqtgSGKTyTm 147 (480)
+++.++.|... |++-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 35667777766 9999999999999875
No 272
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=46.78 E-value=9.1 Score=41.47 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=28.3
Q ss_pred eEEecCCCCCCcccccc-cCCC-CCCCCcchhHHHHHHHHhhcCC
Q 043730 132 TVMAYGQTGTGKTFTLG-RLGD-EDTSSRGIMVRSMEDILADVSL 174 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm~-g~~~-~~~~~~Gii~r~~~~lf~~~~~ 174 (480)
-||..|+|+|||||--. .+.. ....-.|-+-....++|++.+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 38999999999999741 1111 1122346677778889987653
No 273
>CHL00181 cbbX CbbX; Provisional
Probab=46.61 E-value=8.5 Score=38.55 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999986
No 274
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=46.46 E-value=17 Score=35.48 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.||.--|+..||+|.|||..+
T Consensus 43 ~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred ccCceEEEEEecCCCCchhhH
Confidence 699999999999999999765
No 275
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.42 E-value=2.4e+02 Score=30.95 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=6.7
Q ss_pred eEEEEeCCCCc
Q 043730 295 KLVVVDLAGSE 305 (480)
Q Consensus 295 ~L~lVDLAGSE 305 (480)
.++.||=.|.-
T Consensus 91 qfcYv~~~g~V 101 (546)
T PF07888_consen 91 QFCYVDQKGEV 101 (546)
T ss_pred EEEEECCCccE
Confidence 35677766643
No 276
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=46.25 E-value=7.9 Score=45.11 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=16.9
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.|+-.+..|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 3777888999999999998
No 277
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=46.23 E-value=7.6 Score=34.81 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|.+|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 355799999999764
No 278
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=46.08 E-value=11 Score=38.85 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=29.3
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.|..|.+ |+++= .-++-.+++..-+-++-.|.+|+|||..+
T Consensus 1 ~pf~~ivg----q~~~~----~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG----QDEMK----LALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc----HHHHH----HHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 44555554 44443 34556667766667889999999999987
No 279
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=45.99 E-value=9.4 Score=32.41 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999988
No 280
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=45.94 E-value=12 Score=38.58 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHhccCCceeEEecCCCCCCccccc
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.+.+|-+..++..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 4456788777888899999999974
No 281
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=45.76 E-value=8.9 Score=34.94 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999997
No 282
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=45.74 E-value=8.3 Score=38.49 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-++-+|++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999986
No 283
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=45.60 E-value=14 Score=41.71 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=19.7
Q ss_pred hhHHHhccCCceeEEecCCCCCCcccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+++.+| |.|..|-+ +||+|||+.
T Consensus 69 eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 69 ELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHhHHhh-cCCeEEEe--ecCCCccch
Confidence 4677888 99986655 899999996
No 284
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.53 E-value=14 Score=38.24 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=25.7
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
+||.|.+ |+.+-+. +...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~~~~iiG----q~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 3666664 4444433 23333333 4456889999999999986
No 285
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=45.08 E-value=11 Score=38.72 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.6
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+.-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999865
No 286
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=44.87 E-value=16 Score=34.53 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=21.5
Q ss_pred hhHHHhcc-CCc--eeEEecCCCCCCccccc
Q 043730 120 PVVESVLD-GYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~-G~n--~ti~aYGqtgSGKTyTm 147 (480)
+=+|.++. |+. ..+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 44677785 543 45789999999999986
No 287
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.37 E-value=11 Score=37.25 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=29.4
Q ss_pred cCCce--eEEecCCCCCCcccccccCCCCC-------------CCCcchhHHHHHHHHhhcCCC
Q 043730 127 DGYNG--TVMAYGQTGTGKTFTLGRLGDED-------------TSSRGIMVRSMEDILADVSLE 175 (480)
Q Consensus 127 ~G~n~--ti~aYGqtgSGKTyTm~g~~~~~-------------~~~~Gii~r~~~~lf~~~~~~ 175 (480)
-|..- .|+.||+.|+|||..--...+.. ...-|==.|.+++||+.....
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 35543 58999999999998641100000 001133368889999876544
No 288
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=44.24 E-value=14 Score=35.80 Aligned_cols=14 Identities=50% Similarity=0.620 Sum_probs=12.7
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
..+|++|+|||.|+
T Consensus 36 ~~~GpagtGKteti 49 (231)
T PF12774_consen 36 ALSGPAGTGKTETI 49 (231)
T ss_dssp EEESSTTSSHHHHH
T ss_pred CCcCCCCCCchhHH
Confidence 46999999999997
No 289
>PRK06217 hypothetical protein; Validated
Probab=44.21 E-value=9.9 Score=35.01 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999999874
No 290
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.11 E-value=31 Score=33.23 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=20.5
Q ss_pred hhHHHhcc-CC--ceeEEecCCCCCCcccc
Q 043730 120 PVVESVLD-GY--NGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 120 plv~~~l~-G~--n~ti~aYGqtgSGKTyT 146 (480)
+-++.++. |+ ..+++.+|.+|||||..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 44677665 44 56788999999999975
No 291
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=44.01 E-value=17 Score=36.27 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.9
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.-+||++.|..|||||.-|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 3568999999999999887
No 292
>PHA01747 putative ATP-dependent protease
Probab=43.92 E-value=11 Score=38.97 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=25.0
Q ss_pred hhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-|+|+.-..+-|.-++=.|+.||||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 457777556778888999999999999996
No 293
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.89 E-value=9.1 Score=38.86 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.+|+-.|.||||||++|
T Consensus 144 ~siii~G~t~sGKTt~l 160 (312)
T COG0630 144 KSIIICGGTASGKTTLL 160 (312)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34688899999999998
No 294
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.57 E-value=2.8e+02 Score=30.69 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 043730 411 RRLEIQLDKLIVENE 425 (480)
Q Consensus 411 ~~l~~~~~~l~~e~~ 425 (480)
++|+.++..|+.+++
T Consensus 432 e~l~~e~~~L~~~~e 446 (652)
T COG2433 432 ERLEEENSELKRELE 446 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 295
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=15 Score=36.15 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=46.2
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhc---cCCc--eeEEecCCCCCCcccccccC------------CCC-CCCCcch
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVL---DGYN--GTVMAYGQTGTGKTFTLGRL------------GDE-DTSSRGI 160 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l---~G~n--~ti~aYGqtgSGKTyTm~g~------------~~~-~~~~~Gi 160 (480)
++..|=+-+..-++|-+.+--|+...-+ =|.+ -.++.||+.|+|||-..-.. |.+ -..-.|=
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 3445555555556666666666655433 1443 35899999999998653100 000 0011244
Q ss_pred hHHHHHHHHhhcCCCCc
Q 043730 161 MVRSMEDILADVSLESD 177 (480)
Q Consensus 161 i~r~~~~lf~~~~~~~~ 177 (480)
=||.++++|.....+..
T Consensus 233 gprmvrdvfrlakenap 249 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAP 249 (408)
T ss_pred CcHHHHHHHHHHhccCC
Confidence 58999999987665543
No 296
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=43.30 E-value=11 Score=37.95 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=27.9
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccC---CceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
.+.+|+.+....+.+... +-.++.| .-..+|.||..|+|||..+
T Consensus 47 L~~~~~~d~~~~~~l~~~----lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRV----IGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHhCCCHHHHHHHHHH----HhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 456776554444444333 2233333 4567999999999999887
No 297
>PRK14531 adenylate kinase; Provisional
Probab=43.19 E-value=11 Score=34.80 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 298
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=43.08 E-value=11 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 456788899999997
No 299
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=43.03 E-value=11 Score=32.72 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999874
No 300
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=42.83 E-value=8 Score=37.08 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=11.0
Q ss_pred cCCCCCCccccc
Q 043730 136 YGQTGTGKTFTL 147 (480)
Q Consensus 136 YGqtgSGKTyTm 147 (480)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999998
No 301
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=42.80 E-value=18 Score=40.43 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+...|+.+...+.. +.-......++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~----~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQ----DLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHH----HhccCCCccEEEECCCCCcHHHHH
Confidence 3444556665554432 222333345788999999999864
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.79 E-value=12 Score=40.33 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.8
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCce-eEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNG-TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~-ti~aYGqtgSGKTyTm 147 (480)
+||.|.+. +.+-+ .+-+.+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliGQ----e~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVGQ----DVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcCc----HHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 46777653 33332 222333345544 7899999999999974
No 303
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=42.78 E-value=17 Score=38.84 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=15.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999987
No 304
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.74 E-value=11 Score=39.99 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.8
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456788899999999998
No 305
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=42.74 E-value=13 Score=41.00 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=19.2
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+|..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 345566789885 55569999999973
No 306
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.72 E-value=11 Score=39.54 Aligned_cols=17 Identities=53% Similarity=0.651 Sum_probs=14.8
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.++-.|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35678899999999998
No 307
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=42.66 E-value=11 Score=38.44 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=15.5
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+.-|+-.|.+|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 445888999999999986
No 308
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.60 E-value=12 Score=40.89 Aligned_cols=45 Identities=29% Similarity=0.510 Sum_probs=30.3
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.||.+++....-..+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 47788887754432233222 222 3567889999999999999875
No 309
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.48 E-value=1.2e+02 Score=32.52 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 043730 327 LSALGKCINAL 337 (480)
Q Consensus 327 L~~L~~vI~aL 337 (480)
++-|+-|+...
T Consensus 13 ~~~~~~~~~g~ 23 (475)
T PRK13729 13 YLWLGIVVVGA 23 (475)
T ss_pred HHHHHHHHHHH
Confidence 44455554433
No 310
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=42.42 E-value=8.6 Score=37.16 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.32 E-value=12 Score=37.08 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=14.5
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
..+|...|++|+|||.|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTI 89 (272)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345656699999999997
No 312
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=42.30 E-value=14 Score=36.88 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=24.1
Q ss_pred eEEecCCCCCCccccc-----ccCCCCCCCCcchhHHHHHHHH
Q 043730 132 TVMAYGQTGTGKTFTL-----GRLGDEDTSSRGIMVRSMEDIL 169 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm-----~g~~~~~~~~~Gii~r~~~~lf 169 (480)
.|+.-|.+|||||..| .|+---+.-.+.++|.+++.+-
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 3677899999999998 2322223334566666665443
No 313
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.27 E-value=10 Score=31.67 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=13.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999987
No 314
>PRK06696 uridine kinase; Validated
Probab=42.23 E-value=19 Score=34.26 Aligned_cols=21 Identities=29% Similarity=0.044 Sum_probs=17.0
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+....|.--|.+|||||+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 455667778899999999986
No 315
>CHL00195 ycf46 Ycf46; Provisional
Probab=42.23 E-value=11 Score=40.85 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=15.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999886
No 316
>PRK08233 hypothetical protein; Provisional
Probab=42.12 E-value=11 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999986
No 317
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.83 E-value=12 Score=34.18 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=13.2
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999975
No 318
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.80 E-value=14 Score=41.22 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999997
No 319
>PRK06851 hypothetical protein; Provisional
Probab=41.73 E-value=21 Score=37.11 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=22.4
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.+.+++|.+-.++--|.+|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 344556778888899999999999999
No 320
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.70 E-value=12 Score=42.68 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-||++|+|||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999985
No 321
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.69 E-value=12 Score=42.63 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=15.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47788999999999998
No 322
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=41.55 E-value=11 Score=41.02 Aligned_cols=16 Identities=44% Similarity=0.767 Sum_probs=14.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999876
No 323
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=41.49 E-value=7.7 Score=44.31 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=16.6
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
|+-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 777889999999999998
No 324
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=41.39 E-value=11 Score=35.13 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999997
No 325
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.36 E-value=1.9e+02 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVENERQQKAFD----DEVERIHLEAQNRISEVERNFAD 455 (480)
Q Consensus 413 l~~~~~~l~~e~~~~~~~~~----~e~~~~~~~~q~~~~~~~~~~~~ 455 (480)
++.++..|+.+++...+... +..+.++..+...++.+...+.+
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~ 49 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444333 33344444444444444444433
No 326
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=41.32 E-value=14 Score=41.04 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=17.8
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
++..+++|.|+.+ .++||+|||.+
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHH
Confidence 3455678888654 46999999975
No 327
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=41.27 E-value=2.2e+02 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVENERQQKAFDDEVE 436 (480)
Q Consensus 413 l~~~~~~l~~e~~~~~~~~~~e~~ 436 (480)
+..+...+..+.+.+....+.+..
T Consensus 45 ~~~ea~~~~~e~~~~l~~a~~ea~ 68 (132)
T PF00430_consen 45 LKEEAEQLLAEYEEKLAEAREEAQ 68 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 328
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.01 E-value=2e+02 Score=31.53 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=5.7
Q ss_pred EEeCCCCcc
Q 043730 298 VVDLAGSER 306 (480)
Q Consensus 298 lVDLAGSEr 306 (480)
.+|+.|+-+
T Consensus 6 ~l~~gG~gn 14 (907)
T KOG2264|consen 6 ALKLGGSGN 14 (907)
T ss_pred eeecCCCCC
Confidence 456777665
No 329
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=40.87 E-value=3.2e+02 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVENERQQKAFDDEVERI 438 (480)
Q Consensus 413 l~~~~~~l~~e~~~~~~~~~~e~~~~ 438 (480)
++.+.+.++.+.+.++..-..+...+
T Consensus 99 ~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 99 LKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 330
>PF14282 FlxA: FlxA-like protein
Probab=40.62 E-value=2.2e+02 Score=23.95 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHH
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQKA--FD-DEVERIHLEAQNRISEVERNFAD 455 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~~--~~-~e~~~~~~~~q~~~~~~~~~~~~ 455 (480)
....+..|+.++..|..++...... +. ++-......+|..|..++.++..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888877655442 22 23333445667777777777664
No 331
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=40.55 E-value=9.9 Score=35.36 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999985
No 332
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=40.48 E-value=13 Score=36.77 Aligned_cols=38 Identities=29% Similarity=0.572 Sum_probs=23.6
Q ss_pred ChHHHHhhhhhhhHH-Hhcc--CCc--eeEEecCCCCCCcccc
Q 043730 109 SQKRVYEVVAKPVVE-SVLD--GYN--GTVMAYGQTGTGKTFT 146 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~-~~l~--G~n--~ti~aYGqtgSGKTyT 146 (480)
.-+++-+.++-|+-. .-|+ |.. -.++.||+.|+|||..
T Consensus 179 QIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 179 QIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLM 221 (424)
T ss_pred HHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHH
Confidence 345566666666542 1222 332 2589999999999974
No 333
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.46 E-value=3e+02 Score=25.36 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=6.5
Q ss_pred CCChHHhHHHHHHHH
Q 043730 375 PRHRGETASTILFGQ 389 (480)
Q Consensus 375 ~~~~~eTl~TL~fa~ 389 (480)
..++-++++-|=|.-
T Consensus 27 ~t~~~~~inflil~~ 41 (184)
T PRK13455 27 NTDFVVTLAFLLFIG 41 (184)
T ss_pred chHHHHHHHHHHHHH
Confidence 334444555444443
No 334
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.33 E-value=15 Score=40.95 Aligned_cols=20 Identities=45% Similarity=0.587 Sum_probs=18.0
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
+-|-.|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 67888899999999999987
No 335
>PRK13767 ATP-dependent helicase; Provisional
Probab=40.30 E-value=16 Score=42.58 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.|+.| -.+||||||...
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 344578998655 459999999873
No 336
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=40.20 E-value=13 Score=33.89 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999986
No 337
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=40.16 E-value=13 Score=35.25 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999885
No 338
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=40.10 E-value=19 Score=31.28 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=15.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-+|.-|||||+-.
T Consensus 16 ~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999987
No 339
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=40.04 E-value=12 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|..+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999987
No 340
>PRK10865 protein disaggregation chaperone; Provisional
Probab=39.96 E-value=19 Score=41.73 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhHHHhccCCc------eeEEecCCCCCCcccc
Q 043730 110 QKRVYEVVAKPVVESVLDGYN------GTVMAYGQTGTGKTFT 146 (480)
Q Consensus 110 Q~~vf~~~~~plv~~~l~G~n------~ti~aYGqtgSGKTyT 146 (480)
|...-+.+ ...|..+..|.. +.++-+|++|+|||++
T Consensus 573 Q~~ai~~l-~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 573 QNEAVEAV-SNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred CHHHHHHH-HHHHHHHHhcccCCCCCCceEEEECCCCCCHHHH
No 341
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.93 E-value=2.9e+02 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVENERQQKAFDDEVERIHLE 441 (480)
Q Consensus 413 l~~~~~~l~~e~~~~~~~~~~e~~~~~~~ 441 (480)
.+.+.++++.+.+.+.+....+...+..+
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555444444444444433
No 342
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=39.91 E-value=16 Score=39.13 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=25.7
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCc-eeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYN-GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKTyTm 147 (480)
+||.|++. +.+- ..+...+-.|.- ..++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~v----~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAVV----AVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHHH----HHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 47778764 3332 223333334543 45677999999999886
No 343
>PRK14532 adenylate kinase; Provisional
Probab=39.88 E-value=13 Score=34.16 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 344
>PRK04040 adenylate kinase; Provisional
Probab=39.84 E-value=12 Score=34.85 Aligned_cols=16 Identities=44% Similarity=0.607 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999987
No 345
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=39.80 E-value=10 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446799999999998
No 346
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.77 E-value=3.6e+02 Score=26.05 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 043730 442 AQNRISEVER 451 (480)
Q Consensus 442 ~q~~~~~~~~ 451 (480)
.|.+++.++.
T Consensus 168 ~~erlk~le~ 177 (290)
T COG4026 168 VQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 347
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=39.66 E-value=2.9e+02 Score=25.01 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 043730 416 QLDKLIVENERQ 427 (480)
Q Consensus 416 ~~~~l~~e~~~~ 427 (480)
+...|+.+.+.+
T Consensus 53 eA~~l~~e~e~~ 64 (154)
T PRK06568 53 DAALLFEQTNAQ 64 (154)
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 348
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=39.65 E-value=3.3e+02 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 043730 408 SLSRRLEIQLDKLIVENERQQK------AFDDEVERIHL 440 (480)
Q Consensus 408 ~~~~~l~~~~~~l~~e~~~~~~------~~~~e~~~~~~ 440 (480)
....+|..++..|+.++...++ .+++|+++++.
T Consensus 36 e~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~ 74 (193)
T PF14662_consen 36 EGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKT 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555443322 23555555543
No 349
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=39.64 E-value=9.6 Score=39.83 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=12.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999887
No 350
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.63 E-value=3e+02 Score=25.15 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 043730 420 LIVENERQQK 429 (480)
Q Consensus 420 l~~e~~~~~~ 429 (480)
+..+.+.+..
T Consensus 71 ~~~e~e~~l~ 80 (173)
T PRK13453 71 LEEENKQKLK 80 (173)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 351
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.46 E-value=19 Score=38.85 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=25.5
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCc-eeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYN-GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKTyTm 147 (480)
+||.|.++ +.+ ...+...+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 46777664 444 2223233334433 45789999999999986
No 352
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=39.35 E-value=21 Score=40.81 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 699999999999999999995
No 353
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.17 E-value=2.4e+02 Score=32.04 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 043730 411 RRLEIQLDKLIVE 423 (480)
Q Consensus 411 ~~l~~~~~~l~~e 423 (480)
.+|+.++++|+.|
T Consensus 421 ~rLE~dvkkLrae 433 (697)
T PF09726_consen 421 SRLEADVKKLRAE 433 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 354
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=39.02 E-value=13 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999875
No 355
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=38.87 E-value=29 Score=40.50 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=13.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+..+-+|+||||||.-|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 33456799999999876
No 356
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=38.82 E-value=23 Score=39.80 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.6
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.|-||+.-|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999996
No 357
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=38.61 E-value=21 Score=35.86 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=22.6
Q ss_pred hhhhHHHhccCC---ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
..+-++.++.|- ...+.-||.+|||||..+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345577777753 556789999999999876
No 358
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=38.56 E-value=14 Score=33.63 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999976
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.52 E-value=13 Score=39.27 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=14.8
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++..|++|+|||+|+
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999998
No 360
>PRK01172 ski2-like helicase; Provisional
Probab=38.44 E-value=18 Score=40.68 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=21.0
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
..-|.+++. .+.+|.| ++..++||||||..
T Consensus 24 ~~~Q~~ai~--------~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 24 YDHQRMAIE--------QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred CHHHHHHHH--------HHhcCCc--EEEECCCCchHHHH
Confidence 345665554 3467777 56678999999986
No 361
>PTZ00110 helicase; Provisional
Probab=38.41 E-value=15 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.8
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..++.|.|. ++.++||||||.+
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTla 183 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLA 183 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHH
Confidence 35567889876 5567999999986
No 362
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=38.33 E-value=17 Score=39.20 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=30.0
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHH-hcc----CCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVES-VLD----GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~-~l~----G~n~ti~aYGqtgSGKTyTm 147 (480)
.++|+.+-+-+.-.+.+.+.+..|+... .+. +....|+-||+.|+|||++-
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 3445555543334444444444444322 222 44557999999999999984
No 363
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=38.29 E-value=24 Score=38.04 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=19.0
Q ss_pred HHhccCCc------eeEEecCCCCCCcccccc
Q 043730 123 ESVLDGYN------GTVMAYGQTGTGKTFTLG 148 (480)
Q Consensus 123 ~~~l~G~n------~ti~aYGqtgSGKTyTm~ 148 (480)
..+++|.+ -.++-.|++|||||+.|-
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 34556633 346778999999999984
No 364
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=38.25 E-value=12 Score=43.07 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-.+..|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999998
No 365
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=38.17 E-value=28 Score=36.65 Aligned_cols=122 Identities=21% Similarity=0.297 Sum_probs=72.3
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCC
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLES 176 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~ 176 (480)
...|+.+-+.+..=+++-+.+ .. +......|+-+|.||+||++.- +.+..+-... ...
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqi-----k~-~ap~~~~vLi~GetGtGKel~A---------------~~iH~~s~r~-~~~ 131 (403)
T COG1221 74 SEALDDLIGESPSLQELREQI-----KA-YAPSGLPVLIIGETGTGKELFA---------------RLIHALSARR-AEA 131 (403)
T ss_pred chhhhhhhccCHHHHHHHHHH-----Hh-hCCCCCcEEEecCCCccHHHHH---------------HHHHHhhhcc-cCC
Confidence 445666665544433333332 11 4455556788999999998773 3444222222 223
Q ss_pred ccEEEEEEeEeechhcc--cC--------CCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhccc
Q 043730 177 DSVSVSYLQLYMETIQD--LL--------DPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRV 241 (480)
Q Consensus 177 ~~V~vS~~EIynE~v~D--LL--------~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~ 241 (480)
.-|.+.|-.+++ ...+ |+ .....+.-+.+....|..++..+...+..-.+-++++|+.|.-+|-
T Consensus 132 PFI~~NCa~~~e-n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 132 PFIAFNCAAYSE-NLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CEEEEEHHHhCc-CHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEec
Confidence 346666555443 3333 22 2223344455555667788888888888778889999999888875
No 366
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=38.01 E-value=3.9e+02 Score=30.52 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=7.3
Q ss_pred chhHHHHHHHHhhcC
Q 043730 159 GIMVRSMEDILADVS 173 (480)
Q Consensus 159 Gii~r~~~~lf~~~~ 173 (480)
.|..+.+.+|-..++
T Consensus 427 aiYSkLFD~lV~~iN 441 (1259)
T KOG0163|consen 427 AIYSKLFDWLVGRIN 441 (1259)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344455555554443
No 367
>PRK00300 gmk guanylate kinase; Provisional
Probab=37.93 E-value=14 Score=34.38 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999876
No 368
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.88 E-value=2.4e+02 Score=23.43 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYMESVKKLEERCC 480 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~~~ 480 (480)
+..+...|+..-+.|..+++...+.....+......++..+..+.......-+.-......+.+...+.+-+|++
T Consensus 48 f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~ 122 (127)
T smart00502 48 FDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQ 122 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
No 369
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=37.84 E-value=25 Score=40.24 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=16.0
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
.+.++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367899999999999996
No 370
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=37.82 E-value=11 Score=39.48 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=0.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+++||..||||||++
T Consensus 5 ~v~~GGrGS~KS~~~ 19 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFI 19 (387)
T ss_dssp ---------------
T ss_pred EEEECCCCchHHHHH
Confidence 578999999999997
No 371
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=37.80 E-value=21 Score=36.24 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=22.5
Q ss_pred ChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCccccc
Q 043730 109 SQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
.|+.+.+.. ...+-.| ....++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l----~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTL----KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 345555433 2233344 3456889999999999875
No 372
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=37.80 E-value=14 Score=32.36 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=19.3
Q ss_pred CCCceecCCCeEEEecCHHHHHHHHHH
Q 043730 209 KTGDVSLPGATLVQIRDQQSFTELLRW 235 (480)
Q Consensus 209 ~~g~~~v~gl~~~~v~s~~e~~~ll~~ 235 (480)
..|.++++++....-.....+..+|..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHh
Confidence 457788888887777777777777765
No 373
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=37.69 E-value=23 Score=37.46 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=27.6
Q ss_pred HHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..-+.+.. -++.+-+|....-|..|.-||||||.+
T Consensus 31 ~~e~~~l~~-~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 31 EREIEALDR-DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHH-HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 333333333 357778999999999999999999987
No 374
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=37.63 E-value=20 Score=34.92 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=18.9
Q ss_pred HHHhccC---CceeEEecCCCCCCccccc
Q 043730 122 VESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
++.++.| ....++.||.+|||||.-.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHH
Confidence 4555553 3557889999999999764
No 375
>PRK10780 periplasmic chaperone; Provisional
Probab=37.62 E-value=2.6e+02 Score=25.29 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043730 416 QLDKLIVE 423 (480)
Q Consensus 416 ~~~~l~~e 423 (480)
+++.+..+
T Consensus 58 el~~~~~e 65 (165)
T PRK10780 58 ELQRMETD 65 (165)
T ss_pred HHHHHHHH
Confidence 33333333
No 376
>PRK03839 putative kinase; Provisional
Probab=37.52 E-value=14 Score=33.66 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+.-
T Consensus 3 I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 3 IAITGTPGVGKTTVS 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999874
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=37.50 E-value=25 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|---|++|||||+++
T Consensus 63 ~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45566799999999997
No 378
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=37.46 E-value=20 Score=36.58 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=24.3
Q ss_pred ecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcc
Q 043730 206 EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHR 240 (480)
Q Consensus 206 e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R 240 (480)
+....|.+++.++......-...++++|+.+.-.|
T Consensus 90 ~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~ 124 (329)
T TIGR02974 90 ERADGGTLFLDELATASLLVQEKLLRVIEYGEFER 124 (329)
T ss_pred hhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEe
Confidence 33446778888888877777777788887655333
No 379
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=37.44 E-value=23 Score=33.69 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=21.0
Q ss_pred hhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-++.++. |+ ...+.-+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 44667664 54 557888999999999875
No 380
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=37.34 E-value=14 Score=39.19 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=18.2
Q ss_pred HHhccCCceeEEecCCCCCCccccccc
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGR 149 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g 149 (480)
.-+=.++|. +-.|++|+||||.-.+
T Consensus 204 ~fve~~~Nl--i~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNL--IELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcE--EEECCCCCCHHHHHHH
Confidence 333467775 5679999999998743
No 381
>PRK06762 hypothetical protein; Provisional
Probab=37.29 E-value=16 Score=32.82 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=12.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|..|||||+.-
T Consensus 4 li~i~G~~GsGKST~A 19 (166)
T PRK06762 4 LIIIRGNSGSGKTTIA 19 (166)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999864
No 382
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=37.11 E-value=19 Score=41.09 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=19.1
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.|..+.| +||||||...
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 455668999976554 8999999973
No 383
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=37.07 E-value=18 Score=42.56 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=20.7
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..++.+.+.+ +..|..|+||||+|
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 466677776654 58899999999997
No 384
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=37.03 E-value=3.1e+02 Score=24.55 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 043730 419 KLIVENER 426 (480)
Q Consensus 419 ~l~~e~~~ 426 (480)
.+..+.+.
T Consensus 74 ~~~~e~e~ 81 (156)
T CHL00118 74 ELTKQYEQ 81 (156)
T ss_pred HHHHHHHH
Confidence 33333333
No 385
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=36.98 E-value=11 Score=38.81 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=11.7
Q ss_pred ecCCCCCCccccc
Q 043730 135 AYGQTGTGKTFTL 147 (480)
Q Consensus 135 aYGqtgSGKTyTm 147 (480)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999997
No 386
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=36.92 E-value=19 Score=36.08 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|.+|||||..+
T Consensus 8 ~i~i~G~~GsGKtt~~ 23 (288)
T PRK05416 8 LVIVTGLSGAGKSVAL 23 (288)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5788999999999997
No 387
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=36.90 E-value=24 Score=34.55 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=22.3
Q ss_pred hhhHHHhcc--CCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLD--GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~--G~n~ti~aYGqtgSGKTyTm 147 (480)
..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 445555555 66778899999999999886
No 388
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=36.88 E-value=21 Score=41.15 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.2
Q ss_pred hhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..+++.+-++- .++..|+||||||..+
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 44555554443 4677999999999986
No 389
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=36.88 E-value=21 Score=39.84 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=22.2
Q ss_pred hHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 110 QKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 110 Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.++++.+...+ -+| ..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQK--RIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHHH
Confidence 778887654332 233 45788889999999764
No 390
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=36.81 E-value=15 Score=33.93 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999987
No 391
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=36.76 E-value=18 Score=41.26 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..++.+ +..++-.|..|+||||+|
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll 385 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTML 385 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHH
Confidence 34455555 345678899999999998
No 392
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=36.67 E-value=38 Score=33.26 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=40.9
Q ss_pred cCCCCCChHHHHhhhhhhhHHHhccCCce-eEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCCCccEEE
Q 043730 103 VFTESASQKRVYEVVAKPVVESVLDGYNG-TVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLESDSVSV 181 (480)
Q Consensus 103 Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~-ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~~~~V~v 181 (480)
+-+-+-.++.+++.+ ..+++|+-+ -|+-||.-|+||+..+ ..++...... ..
T Consensus 62 l~Gvd~qk~~L~~NT-----~~F~~G~pANnVLLwGaRGtGKSSLV------------------KA~~~e~~~~----gl 114 (287)
T COG2607 62 LVGVDRQKEALVRNT-----EQFAEGLPANNVLLWGARGTGKSSLV------------------KALLNEYADE----GL 114 (287)
T ss_pred HhCchHHHHHHHHHH-----HHHHcCCcccceEEecCCCCChHHHH------------------HHHHHHHHhc----CC
Confidence 344444445555554 467789877 4899999999999876 3333333222 12
Q ss_pred EEEeEeechhccc
Q 043730 182 SYLQLYMETIQDL 194 (480)
Q Consensus 182 S~~EIynE~v~DL 194 (480)
..+||-.+.+.+|
T Consensus 115 rLVEV~k~dl~~L 127 (287)
T COG2607 115 RLVEVDKEDLATL 127 (287)
T ss_pred eEEEEcHHHHhhH
Confidence 3788888766555
No 393
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.58 E-value=4.6e+02 Score=26.45 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=6.2
Q ss_pred CCCCCccccc
Q 043730 345 PLRDSKLTRL 354 (480)
Q Consensus 345 PyRdSkLT~L 354 (480)
-||..+|-.+
T Consensus 297 lyRr~kL~~M 306 (406)
T KOG3859|consen 297 LYRRCKLEEM 306 (406)
T ss_pred HHHHHHHHHc
Confidence 3666666655
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=36.41 E-value=15 Score=32.69 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999998865
No 395
>PRK14530 adenylate kinase; Provisional
Probab=36.31 E-value=15 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999875
No 396
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.21 E-value=20 Score=36.92 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=21.7
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+|..+++|-+| +....||||||..+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 457788999997 56678999999986
No 397
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=36.21 E-value=16 Score=38.60 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.6
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999985
No 398
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=36.12 E-value=17 Score=36.68 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|+||||||-.-
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 5788999999999864
No 399
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=35.91 E-value=14 Score=42.35 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
.+-.+.+|+||||||.+|
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778999999999997
No 400
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=35.84 E-value=16 Score=38.66 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999986
No 401
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=35.76 E-value=16 Score=34.36 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+.+|..|||||+.-
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998863
No 402
>PRK13531 regulatory ATPase RavA; Provisional
Probab=35.70 E-value=22 Score=38.33 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=20.5
Q ss_pred hhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.-++..++.|.+ |+-+|++|+|||+.-
T Consensus 29 I~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 3445556666665 577999999999985
No 403
>PRK14527 adenylate kinase; Provisional
Probab=35.67 E-value=18 Score=33.54 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|+.+|.+|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999864
No 404
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=35.63 E-value=13 Score=31.14 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 405
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=35.60 E-value=15 Score=42.59 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
|.-.+..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445778899999999998
No 406
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=35.52 E-value=23 Score=41.38 Aligned_cols=10 Identities=60% Similarity=1.022 Sum_probs=9.0
Q ss_pred CCCCCccccc
Q 043730 138 QTGTGKTFTL 147 (480)
Q Consensus 138 qtgSGKTyTm 147 (480)
.|||||||||
T Consensus 67 ~TGtGKT~~~ 76 (986)
T PRK15483 67 ETGTGKTYVY 76 (986)
T ss_pred CCCCCHHHHH
Confidence 6999999976
No 407
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.49 E-value=3e+02 Score=31.46 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.3
Q ss_pred eeEEEE
Q 043730 294 SKLVVV 299 (480)
Q Consensus 294 s~L~lV 299 (480)
|+|.||
T Consensus 635 gkL~~i 640 (1259)
T KOG0163|consen 635 GKLKFI 640 (1259)
T ss_pred ceeeEE
Confidence 333333
No 408
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.49 E-value=24 Score=36.27 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=25.5
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCC-ceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~-n~ti~aYGqtgSGKTyTm 147 (480)
+||.|.+ |+.+.+ .+.+.+-.|. ...++-||+.|+|||++.
T Consensus 15 ~~~~iig----~~~~~~----~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 15 TFDDVVG----QSHITN----TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cHHhcCC----cHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666644 344433 2333333453 447888999999999886
No 409
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.39 E-value=23 Score=36.89 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=20.2
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|..++.|.++-..| +||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3466788999975554 8999999885
No 410
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=35.37 E-value=15 Score=28.01 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.1
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999998876
No 411
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.37 E-value=4e+02 Score=25.39 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----------------HHHHHHHHHHH
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLE---AQNRISEVERNFAD----------------ALEKEKLKCQM 466 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~---~q~~~~~~~~~~~~----------------~~e~~~~~~~~ 466 (480)
...++..|+.-+..+..+.+++......++..+..+ +...+..+++.|.+ .-|...-++-.
T Consensus 42 m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ 121 (207)
T PF05010_consen 42 MRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIE 121 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHhhh
Q 043730 467 EYMESVKKLEERC 479 (480)
Q Consensus 467 ~~~~~~~~l~e~~ 479 (480)
+|.+++++.++|.
T Consensus 122 ey~~~l~~~eqry 134 (207)
T PF05010_consen 122 EYEERLKKEEQRY 134 (207)
T ss_pred HHHHHHHHHHHHH
No 412
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=35.18 E-value=17 Score=34.36 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=14.6
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 335567899999999998
No 413
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=35.17 E-value=16 Score=40.90 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=15.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
.+-++..|..|||||.||
T Consensus 14 ~~~~~V~Ag~GSGKT~~L 31 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVI 31 (664)
T ss_pred CCCEEEEecCCCCHHHHH
Confidence 345678889999999998
No 414
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=35.17 E-value=15 Score=35.32 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=11.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++-+|+||||||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 466899999999974
No 415
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.16 E-value=2.9e+02 Score=32.15 Aligned_cols=23 Identities=30% Similarity=0.180 Sum_probs=13.0
Q ss_pred CCCceeecccCCCCC--ChHHHHhh
Q 043730 94 DSDTYEFDEVFTESA--SQKRVYEV 116 (480)
Q Consensus 94 ~~~~f~FD~Vf~~~~--~Q~~vf~~ 116 (480)
+...|.+|.=|+-.. +|-.+++.
T Consensus 54 g~qYF~Cd~ncG~FVr~sq~r~lEd 78 (1243)
T KOG0971|consen 54 GVQYFECDENCGVFVRSSQVRELED 78 (1243)
T ss_pred ceeeEecCCCcceEeehhhhHHhhc
Confidence 446788887666543 33344443
No 416
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=35.16 E-value=34 Score=36.38 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-.|.+|+|||+|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999998
No 417
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=35.10 E-value=20 Score=32.74 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=19.0
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
-+...+.| -+++-.|++|.|||..+
T Consensus 28 ~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 28 ELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 34566777 45566799999999987
No 418
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=34.98 E-value=17 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=14.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
+++-+|++|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6788999999999987
No 419
>PRK10689 transcription-repair coupling factor; Provisional
Probab=34.97 E-value=28 Score=41.79 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
|.+...|.+.+..+...+ -.+...-++..|+||||||-+
T Consensus 599 ~~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHH
Confidence 456666777665543332 233444578999999999964
No 420
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=34.95 E-value=16 Score=32.14 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.1
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999765
No 421
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=34.89 E-value=13 Score=33.79 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=11.0
Q ss_pred cCCCCCCccccc
Q 043730 136 YGQTGTGKTFTL 147 (480)
Q Consensus 136 YGqtgSGKTyTm 147 (480)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999998
No 422
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=34.81 E-value=28 Score=39.65 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhHHHhccCC------ceeEEecCCCCCCcccc
Q 043730 110 QKRVYEVVAKPVVESVLDGY------NGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 110 Q~~vf~~~~~plv~~~l~G~------n~ti~aYGqtgSGKTyT 146 (480)
|++.-+.+ ...+.....|. .+.++-+|+||+|||++
T Consensus 459 Q~~ai~~l-~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 459 QDEAIDSL-VSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred cHHHHHHH-HHHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=34.70 E-value=20 Score=41.11 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999875
No 424
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.48 E-value=17 Score=39.67 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=14.1
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|+|||+|+
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45556699999999998
No 425
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=34.47 E-value=18 Score=33.45 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=12.1
Q ss_pred EEecCCCCCCcccc
Q 043730 133 VMAYGQTGTGKTFT 146 (480)
Q Consensus 133 i~aYGqtgSGKTyT 146 (480)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999986
No 426
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.42 E-value=17 Score=35.33 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.+..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35678899999999986
No 427
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=34.22 E-value=3.5e+02 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=14.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 402 EEFDYKSLSRRLEIQLDKLIVENERQQK 429 (480)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~l~~e~~~~~~ 429 (480)
...++...+..|+..|+.....+....+
T Consensus 65 q~~nyq~fI~~Le~~I~q~~~~~~~~~~ 92 (148)
T COG2882 65 QWQNYQQFISQLEVAIDQQQSQLSKLRK 92 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566555555554444333
No 428
>PHA02774 E1; Provisional
Probab=34.18 E-value=24 Score=38.88 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=20.1
Q ss_pred HHHhccCCc--eeEEecCCCCCCccccc
Q 043730 122 VESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
+..++.|.- .|++-||+.|+||||--
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 445566543 58999999999999974
No 429
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=19 Score=38.08 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=12.8
Q ss_pred eEEecCCCCCCcccc
Q 043730 132 TVMAYGQTGTGKTFT 146 (480)
Q Consensus 132 ti~aYGqtgSGKTyT 146 (480)
-|+..|+||||||+.
T Consensus 228 NvLllGPtGsGKTll 242 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLL 242 (564)
T ss_pred cEEEECCCCCchhHH
Confidence 467889999999984
No 430
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=33.91 E-value=29 Score=38.82 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=21.6
Q ss_pred hHHHhc--cCCceeEEecCCCCCCccccc
Q 043730 121 VVESVL--DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l--~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++ +|-.+|+..-|..|||||.|+
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV 439 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATV 439 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehH
Confidence 344444 477779999999999999998
No 431
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=33.86 E-value=29 Score=35.08 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=22.4
Q ss_pred hhhhHHHhccCC---ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
+.+-++.++.|- ...+.-||.+|||||...
T Consensus 87 g~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 87 GSKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CCHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 345567777653 556778999999999876
No 432
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=33.76 E-value=22 Score=42.23 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=20.4
Q ss_pred hhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 119 KPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 119 ~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
..+|..++.|.|+.+. -+||+|||.+
T Consensus 466 ~eaI~aiL~GrDVLVi--mPTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDVFVL--MPTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCEEEE--cCCCccHHHH
Confidence 3467778899996554 4899999987
No 433
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=33.61 E-value=17 Score=34.21 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.7
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|.+|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999999765
No 434
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.59 E-value=3e+02 Score=23.45 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 424 NERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEY 468 (480)
Q Consensus 424 ~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~ 468 (480)
++.+...+-.++..|+..++. -++++-+..+|+..++..+..
T Consensus 13 le~~l~~l~~el~~LK~~~~e---l~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAE---LLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333322 244555556666666555543
No 435
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.54 E-value=4.7e+02 Score=26.53 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 417 LDKLIVENERQQKAFDDEVERIHLEAQNRI 446 (480)
Q Consensus 417 ~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~ 446 (480)
|+.|+++.+.....++.|-+.+...++.++
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl 115 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKL 115 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333333333333
No 436
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.53 E-value=4.1e+02 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 407 KSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERN 452 (480)
Q Consensus 407 ~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~ 452 (480)
+.+..+.+++++.+.++.+. ++..++|+..-.+++...++.+|++
T Consensus 217 eklR~r~eeeme~~~aeq~s-lkRt~EeL~~G~~kL~~~~etLEqq 261 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQES-LKRTEEELNIGKQKLVAMKETLEQQ 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHhhHHHHHHHHHHHHHH
Confidence 34555666666666555443 2223333443333333333334433
No 437
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=33.48 E-value=29 Score=35.46 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=24.4
Q ss_pred hhhhhhHHHhcc--CC--ceeEEecCCCCCCccccc
Q 043730 116 VVAKPVVESVLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 116 ~~~~plv~~~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
.++-+-++.++. |+ ...+.-||++|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 345677888887 54 346789999999999764
No 438
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=33.44 E-value=40 Score=35.85 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=49.1
Q ss_pred CCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcC-CCCccEEEEEEeEeechhcc-cCCCCC------
Q 043730 128 GYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVS-LESDSVSVSYLQLYMETIQD-LLDPAN------ 199 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~-~~~~~V~vS~~EIynE~v~D-LL~~~~------ 199 (480)
..+..|+-.|.+||||++.- +++.. ... ....-+.+.+-.+..+.+.. |+...+
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA---------------~~ih~---~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~ 220 (469)
T PRK10923 159 RSSISVLINGESGTGKELVA---------------HALHR---HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGA 220 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHH---------------HHHHh---cCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCC
Confidence 45777999999999999753 11111 111 11112444444443333322 222111
Q ss_pred --CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHh
Q 043730 200 --DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGE 237 (480)
Q Consensus 200 --~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~ 237 (480)
......+....|.+++.++......-...++++|+.+.
T Consensus 221 ~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~ 260 (469)
T PRK10923 221 NTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQ 260 (469)
T ss_pred CcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCc
Confidence 11122344456778888877777766677777776654
No 439
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=32 Score=34.64 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=29.3
Q ss_pred eEEecCCCCCCcccccccCCCCC-------------CCCcchhHHHHHHHHhhcCCCCcc
Q 043730 132 TVMAYGQTGTGKTFTLGRLGDED-------------TSSRGIMVRSMEDILADVSLESDS 178 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm~g~~~~~-------------~~~~Gii~r~~~~lf~~~~~~~~~ 178 (480)
.|+-||..|+|||..--...+.. ....|==|+.+++||+-......+
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apS 280 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS 280 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCc
Confidence 57899999999997531100000 011233489999999877665443
No 440
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=33.32 E-value=28 Score=40.69 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 105 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+...|......+ ..+.-.+...-++..|+||||||-+.
T Consensus 451 ~~T~~Q~~aI~~I----~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 451 EETPDQLKAIEEI----KADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred CCCHHHHHHHHHH----HhhhcccCcCCEEEECCCCccHHHHH
Confidence 3444455544433 33333444455788999999999764
No 441
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.32 E-value=20 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
...-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3346799999999997
No 442
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.32 E-value=4.2e+02 Score=25.02 Aligned_cols=6 Identities=0% Similarity=0.235 Sum_probs=2.1
Q ss_pred HHHHHH
Q 043730 421 IVENER 426 (480)
Q Consensus 421 ~~e~~~ 426 (480)
..+.+.
T Consensus 102 l~e~e~ 107 (205)
T PRK06231 102 LENAKQ 107 (205)
T ss_pred HHHHHH
Confidence 333333
No 443
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=33.25 E-value=13 Score=34.16 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=18.0
Q ss_pred hhHHHhccCCc---eeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYN---GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n---~ti~aYGqtgSGKTyTm 147 (480)
|-++.++.|+- ...+-+|++|+|||+.+
T Consensus 19 ~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 19 PPLDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp ----EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred CCcceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 33455555553 24677899999999987
No 444
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.13 E-value=35 Score=37.40 Aligned_cols=35 Identities=46% Similarity=0.824 Sum_probs=26.5
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|..||+. ++..+.+-.-..+| ||.-|+||||..
T Consensus 120 ~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 568889983 34455666666777 999999999975
No 445
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.09 E-value=19 Score=35.85 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=15.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.+.-+|++|+|||.++
T Consensus 76 ~~i~~~G~~g~GKTtl~ 92 (270)
T PRK06731 76 QTIALIGPTGVGKTTTL 92 (270)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 47788999999999997
No 446
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.09 E-value=27 Score=37.88 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=19.5
Q ss_pred hhHHHhccCCceeEEecCCCCCCcccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
..|..+++|.++.|-| |||||||-.
T Consensus 166 q~IP~lL~grD~lV~a--QTGSGKTLA 190 (708)
T KOG0348|consen 166 QAIPVLLEGRDALVRA--QTGSGKTLA 190 (708)
T ss_pred cchhhhhcCcceEEEc--CCCCcccHH
Confidence 4466678999986554 999999965
No 447
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.04 E-value=2.8e+02 Score=29.60 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVEN 424 (480)
Q Consensus 413 l~~~~~~l~~e~ 424 (480)
++.|..+|+.+.
T Consensus 526 iq~Ek~ELkmd~ 537 (641)
T KOG3915|consen 526 IQLEKTELKMDF 537 (641)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 448
>PRK00279 adk adenylate kinase; Reviewed
Probab=32.96 E-value=19 Score=33.98 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=13.1
Q ss_pred eEEecCCCCCCcccc
Q 043730 132 TVMAYGQTGTGKTFT 146 (480)
Q Consensus 132 ti~aYGqtgSGKTyT 146 (480)
-|+.+|..|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999976
No 449
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.93 E-value=52 Score=35.73 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHhccCCceeEEecCCCCCCccccc
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-+++|-+.-.+| +||||||...
T Consensus 123 p~~l~GrD~v~iA--~TGSGKTLay 145 (519)
T KOG0331|consen 123 PIALSGRDLVGIA--RTGSGKTLAY 145 (519)
T ss_pred ceeccCCceEEEe--ccCCcchhhh
Confidence 3467898875555 8999999874
No 450
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=32.90 E-value=19 Score=34.24 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=21.2
Q ss_pred hhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
|-++.++.| + +..++.+|++|||||...
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 446777743 3 678899999999999764
No 451
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=32.89 E-value=34 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred hhhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 117 VAKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 117 ~~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
++-+-+|.++.| + ...+.-||+.|||||..+
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 345668888875 3 345678999999999875
No 452
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.83 E-value=5e+02 Score=25.77 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHhh---CCCCCCCCCCcccccccccCC-CCceeeEEEeeCCCCCChHHhHHHHHHHHHh
Q 043730 330 LGKCINALAE---NSAHVPLRDSKLTRLLRDSFG-GTARTSLIVTIGPSPRHRGETASTILFGQRA 391 (480)
Q Consensus 330 L~~vI~aL~~---~~~~iPyRdSkLT~LL~dsLg-Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra 391 (480)
||.-|..|.. -....|-|...|.-+|..-+- ..+++.-+ ..+-.+.|+-.+|+-|-.+
T Consensus 55 i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa----~Rplel~e~Ekvlk~aIq~ 116 (338)
T KOG3647|consen 55 IGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAA----QRPLELLEVEKVLKSAIQA 116 (338)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH----cCCccHHHHHHHHHHHHHH
Confidence 4444444432 134566666666666643221 11111111 1334566777888777544
No 453
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.82 E-value=3.3e+02 Score=29.92 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=18.7
Q ss_pred CCcchhHHHHHHHHhhcCCCCccEEEEEE
Q 043730 156 SSRGIMVRSMEDILADVSLESDSVSVSYL 184 (480)
Q Consensus 156 ~~~Gii~r~~~~lf~~~~~~~~~V~vS~~ 184 (480)
...--|--++.||.+-|.....-|..|++
T Consensus 155 H~WP~iL~mlhWlvdlI~~~t~~v~~~~l 183 (581)
T KOG0995|consen 155 HNWPHILGMLHWLVDLIRINTALVEDSPL 183 (581)
T ss_pred CccHHHHHHHHHHHHHHHHhHHHhhccch
Confidence 34455666778888777666555666655
No 454
>PTZ00301 uridine kinase; Provisional
Probab=32.79 E-value=15 Score=34.93 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=11.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|---|.+|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 334599999999875
No 455
>PRK09039 hypothetical protein; Validated
Probab=32.73 E-value=4.2e+02 Score=27.21 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 410 SRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEK 459 (480)
Q Consensus 410 ~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~ 459 (480)
+..|+.+|+.|+.++......++.- +....+.+.+++.+++.+...+..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~a-e~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDAS-EKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665554433333221 222255677777777777666543
No 456
>PRK10867 signal recognition particle protein; Provisional
Probab=32.69 E-value=23 Score=37.73 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.5
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
-..|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456788899999999997
No 457
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.61 E-value=25 Score=38.20 Aligned_cols=40 Identities=38% Similarity=0.514 Sum_probs=24.9
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
||.|.+ |+.+.+.+ ...+. .| ....++-||+.|+|||.+.
T Consensus 13 ~~dvvG----q~~v~~~L-~~~i~---~~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 13 FDEVVG----QEHVKEVL-LAALR---QGRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred HHHhcC----hHHHHHHH-HHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 666654 55654432 22222 23 3345689999999999986
No 458
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=32.56 E-value=24 Score=32.20 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.2
Q ss_pred hHHHhcc-CCceeEEecCCCCCCccccc
Q 043730 121 VVESVLD-GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~-G~n~ti~aYGqtgSGKTyTm 147 (480)
++..++. .....|+..|..|||||..+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4556664 77889999999999999876
No 459
>PTZ00014 myosin-A; Provisional
Probab=32.44 E-value=34 Score=39.42 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.|-||+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 689999999999999999874
No 460
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=32.35 E-value=21 Score=35.02 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 105 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++++|....+... .+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEA-KGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHH-Hhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 34566666665442 22222 345567888999999999997
No 461
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.35 E-value=20 Score=32.46 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++-.|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999997
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=32.31 E-value=17 Score=42.14 Aligned_cols=17 Identities=41% Similarity=0.808 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+-.+..|+||||||+.|
T Consensus 489 gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 489 GHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34688999999999998
No 463
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=32.23 E-value=19 Score=38.10 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.7
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999974
No 464
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=32.15 E-value=18 Score=37.06 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999997
No 465
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=23 Score=38.43 Aligned_cols=15 Identities=47% Similarity=0.904 Sum_probs=13.6
Q ss_pred eEEecCCCCCCcccc
Q 043730 132 TVMAYGQTGTGKTFT 146 (480)
Q Consensus 132 ti~aYGqtgSGKTyT 146 (480)
.|+-||+.|+|||-.
T Consensus 258 GiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLI 272 (744)
T ss_pred eEEEECCCCCChhHH
Confidence 589999999999985
No 466
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.69 E-value=31 Score=32.67 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=19.5
Q ss_pred hHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 121 VVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
-++.++. |+ ...++-+|.+|+|||...
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3566664 43 556777999999998764
No 467
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=31.69 E-value=18 Score=41.80 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.5
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
-++-.+..|+||||||+.|
T Consensus 455 d~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 455 DVGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3556789999999999998
No 468
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.65 E-value=3.2e+02 Score=27.16 Aligned_cols=16 Identities=50% Similarity=0.547 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 043730 410 SRRLEIQLDKLIVENE 425 (480)
Q Consensus 410 ~~~l~~~~~~l~~e~~ 425 (480)
++.|+.++++|++|..
T Consensus 20 IqelE~QldkLkKE~q 35 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQ 35 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777776643
No 469
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=31.59 E-value=20 Score=32.71 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|.+|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 35889999999999986
No 470
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=31.56 E-value=21 Score=39.82 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 46789999999999986
No 471
>PLN02200 adenylate kinase family protein
Probab=31.51 E-value=21 Score=34.53 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+..|.+|||||+--
T Consensus 44 ~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 44 FITFVLGGPGSGKGTQC 60 (234)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46789999999999874
No 472
>PRK09354 recA recombinase A; Provisional
Probab=31.50 E-value=33 Score=35.46 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=24.2
Q ss_pred hhhhhHHHhcc-C-C--ceeEEecCCCCCCccccc
Q 043730 117 VAKPVVESVLD-G-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 117 ~~~plv~~~l~-G-~--n~ti~aYGqtgSGKTyTm 147 (480)
++-+-++.+|. | + ...+.-||++|||||...
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 45677888887 4 3 446789999999999865
No 473
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.49 E-value=3.8e+02 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 043730 418 DKLIVENERQQKAFDDEVERIHLE----AQNRISEVERNFADALEKEKLKC 464 (480)
Q Consensus 418 ~~l~~e~~~~~~~~~~e~~~~~~~----~q~~~~~~~~~~~~~~e~~~~~~ 464 (480)
.+.+.+.++.++..+..-++++.| +.+.|++.-+++..++++.+...
T Consensus 109 RkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n 159 (216)
T KOG4031|consen 109 RKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN 159 (216)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444443333333333 33344444455555555555444
No 474
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=31.48 E-value=3.6e+02 Score=23.71 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043730 414 EIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERN---FADALEKEKLKCQMEYMESVKKLEERC 479 (480)
Q Consensus 414 ~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~l~e~~ 479 (480)
+.-.+++..+++.+...++.|+..|..+.+..+.+..++ ....+...-.+...+..+..+.|...+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql 83 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQL 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK05480 uridine/cytidine kinase; Provisional
Probab=31.47 E-value=19 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|.--|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35667799999999876
No 476
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.42 E-value=24 Score=37.50 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++..|.+|+|||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 457888899999999997
No 477
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=31.39 E-value=19 Score=41.68 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=16.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
|.-.+..|+||||||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 677789999999999998
No 478
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.33 E-value=2.4e+02 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 043730 413 LEIQLDKLIVENERQ 427 (480)
Q Consensus 413 l~~~~~~l~~e~~~~ 427 (480)
++.+++.+..+++.+
T Consensus 48 ~~~~l~~~~~el~~~ 62 (158)
T PF03938_consen 48 LQKELQAKQKELQKL 62 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 479
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.28 E-value=29 Score=39.59 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=24.9
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCC-ceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~-n~ti~aYGqtgSGKTyTm 147 (480)
+||.|.+. +.+-+. |.+.+-.|. .-.++-||..|+|||.+.
T Consensus 14 tFdEVIGQ----e~Vv~~----L~~aL~~gRL~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 14 DFASLVGQ----EHVVRA----LTHALDGGRLHHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred cHHHHcCc----HHHHHH----HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 36777763 444332 222222333 456788999999999875
No 480
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.23 E-value=5.3e+02 Score=25.65 Aligned_cols=44 Identities=32% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 043730 411 RRLEIQLDKLIVENERQQKAF----------DDEVERIHLEAQNRISEVERNFA 454 (480)
Q Consensus 411 ~~l~~~~~~l~~e~~~~~~~~----------~~e~~~~~~~~q~~~~~~~~~~~ 454 (480)
..|+..|++.+.|+++.++-| .+|.+++..|++...+.+-..++
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777666544 45556666655555544444433
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=31.15 E-value=21 Score=32.88 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+...|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999987
No 482
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=31.10 E-value=1.1e+02 Score=32.41 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 381 TASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENERQQKAFDDEVERIH 439 (480)
Q Consensus 381 Tl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~ 439 (480)
|--.|+|-++-+-++|+|+-. -.+.+.-+.+|+..+++|+.--+.....+.+|+..|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~-~l~fe~pi~ele~ki~el~~~~~~~~~~~~~ei~~l~ 111 (431)
T PLN03230 54 TTGALKILNRFKPLKNKPKPV-TLPFEKPIVDLENRIDEVRELANKTGVDFSAQIAELE 111 (431)
T ss_pred cccHHHHHHhcCCCCCCCCCC-ccchhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Confidence 345688999999999988844 3566666677777777776532222223444444443
No 483
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=31.02 E-value=39 Score=39.26 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=15.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+.++-.|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999986
No 484
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=30.99 E-value=35 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=23.6
Q ss_pred hhhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 117 VAKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 117 ~~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
++-+-+|.++.| + .....-||..|||||.-+
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 456678888875 2 345678999999999864
No 485
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=30.97 E-value=27 Score=33.50 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
++|.+|+.||||++-.
T Consensus 5 a~lV~GpAgSGKSTyC 20 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYC 20 (273)
T ss_pred eEEEEccCCCCcchHH
Confidence 5789999999998754
No 486
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.95 E-value=4.4e+02 Score=25.85 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 381 TASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKE 460 (480)
Q Consensus 381 Tl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~ 460 (480)
++.++.++.....+...-+.......+.+ .|..++..++++..++..+.++-.+.+.... ....+.+..+.+.++.-
T Consensus 25 ~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~-~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 25 SLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR-RSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHH
Q ss_pred HH
Q 043730 461 KL 462 (480)
Q Consensus 461 ~~ 462 (480)
++
T Consensus 102 ~~ 103 (247)
T COG3879 102 RM 103 (247)
T ss_pred HH
No 487
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=30.89 E-value=19 Score=39.63 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=0.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++.+|.||||||..|
T Consensus 179 ~li~G~tGsGKs~~i 193 (566)
T TIGR02759 179 ILIHGTTGSGKSVAI 193 (566)
T ss_pred eEEEcCCCCCHHHHH
No 488
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=30.88 E-value=4.1e+02 Score=24.15 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYMESVKKLEERC 479 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~~ 479 (480)
++.+.+-++...+.....+.. -+....+.+.+..+++.++++++..-...++..+...+....+.+.+.++.+
T Consensus 41 ~kpI~~~l~~R~~~I~~~l~~-A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~ 113 (174)
T PRK07352 41 RGFLGKILEERREAILQALKE-AEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDM 113 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=30.85 E-value=22 Score=35.26 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=0.0
Q ss_pred eEEecCCCCCCccc
Q 043730 132 TVMAYGQTGTGKTF 145 (480)
Q Consensus 132 ti~aYGqtgSGKTy 145 (480)
.|+..|..|||||+
T Consensus 4 liil~G~pGSGKST 17 (300)
T PHA02530 4 IILTVGVPGSGKST 17 (300)
T ss_pred EEEEEcCCCCCHHH
No 490
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=30.84 E-value=34 Score=38.25 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=0.0
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKT 144 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKT 144 (480)
|.|..|.+ .+.+...++-.++++..+.|+-+|..|+|||
T Consensus 1 ~pf~~ivG--------q~~~~~al~~~av~~~~g~vli~G~~GtgKs 39 (633)
T TIGR02442 1 FPFTAIVG--------QEDLKLALLLNAVDPRIGGVLIRGEKGTAKS 39 (633)
T ss_pred CCcchhcC--------hHHHHHHHHHHhhCCCCCeEEEEcCCCCcHH
No 491
>PRK02496 adk adenylate kinase; Provisional
Probab=30.82 E-value=22 Score=32.52 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=0.0
Q ss_pred EEecCCCCCCccc
Q 043730 133 VMAYGQTGTGKTF 145 (480)
Q Consensus 133 i~aYGqtgSGKTy 145 (480)
|+..|+.|||||.
T Consensus 4 i~i~G~pGsGKst 16 (184)
T PRK02496 4 LIFLGPPGAGKGT 16 (184)
T ss_pred EEEECCCCCCHHH
No 492
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=30.77 E-value=3.8e+02 Score=30.58 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHH------HHHHHHHHHH---------------HH
Q 043730 373 PSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDK------LIVENERQQK---------------AF 431 (480)
Q Consensus 373 p~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~------l~~e~~~~~~---------------~~ 431 (480)
|+...+.+.+..|+-..+|+.+...... ...|.+.+.+.+.+ ++.+.+.... .+
T Consensus 528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~-----a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~l 602 (762)
T PLN03229 528 PNYLSLKYKLDMLNEFSRAKALSEKKSK-----AEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDL 602 (762)
T ss_pred cccHHHHHHHHHHHHHHHhhhhcccchh-----hhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhh
Q 043730 432 DDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEY---------MESVKKLEERC 479 (480)
Q Consensus 432 ~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~---------~~~~~~l~e~~ 479 (480)
++++++++.|.+.+++.+-+......+ +.++.+..- .+++.+|++.|
T Consensus 603 keki~~~~~Ei~~eie~v~~S~gL~~~-~~~k~e~a~~~~~p~~~~k~KIe~L~~eI 658 (762)
T PLN03229 603 KEKVEKMKKEIELELAGVLKSMGLEVI-GVTKKNKDTAEQTPPPNLQEKIESLNEEI 658 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhh-hhhhhhhcccccCCChhhHHHHHHHHHHH
No 493
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.68 E-value=5.4e+02 Score=27.10 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043730 410 SRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQ---NRISEVERNFADALEKEKLKCQMEYMESVKKLEERC 479 (480)
Q Consensus 410 ~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q---~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~~ 479 (480)
...++.....|..++++....+..++..+...+| .|.+.+|.++.+.+|.-. .+-....+.+..+|||+
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq-~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQ-NEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
No 494
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=22 Score=39.94 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=0.0
Q ss_pred EEecCCCCCCccc
Q 043730 133 VMAYGQTGTGKTF 145 (480)
Q Consensus 133 i~aYGqtgSGKTy 145 (480)
|+-||+.|+||||
T Consensus 704 iLLyGppGcGKT~ 716 (952)
T KOG0735|consen 704 ILLYGPPGCGKTL 716 (952)
T ss_pred eEEECCCCCcHHH
No 495
>PRK06851 hypothetical protein; Provisional
Probab=30.65 E-value=28 Score=36.20 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=0.0
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++.++++.+-.++--|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
No 496
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=30.59 E-value=20 Score=39.70 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=0.0
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+...+-.|..|||||||+
T Consensus 160 ~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTV 177 (586)
T ss_pred CCeEEEEcCCCCCHHHHH
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=30.57 E-value=22 Score=32.36 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=0.0
Q ss_pred EEecCCCCCCccc
Q 043730 133 VMAYGQTGTGKTF 145 (480)
Q Consensus 133 i~aYGqtgSGKTy 145 (480)
|+-.|++|||||.
T Consensus 5 i~l~G~~gsGKst 17 (175)
T cd00227 5 IILNGGSSAGKSS 17 (175)
T ss_pred EEEECCCCCCHHH
No 498
>PRK14528 adenylate kinase; Provisional
Probab=30.55 E-value=23 Score=32.84 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=0.0
Q ss_pred EEecCCCCCCccc
Q 043730 133 VMAYGQTGTGKTF 145 (480)
Q Consensus 133 i~aYGqtgSGKTy 145 (480)
|+..|++|||||+
T Consensus 4 i~i~G~pGsGKtt 16 (186)
T PRK14528 4 IIFMGPPGAGKGT 16 (186)
T ss_pred EEEECCCCCCHHH
No 499
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.50 E-value=4e+02 Score=23.84 Aligned_cols=73 Identities=8% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYMESVKKLEERC 479 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~e~~ 479 (480)
+..+.+-++..-+.....++. -+....+.+.+..+++.++.+++..-...++..+...+....+.+.++++..
T Consensus 44 ~~Pi~~~l~~R~~~I~~~l~~-Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea 116 (156)
T CHL00118 44 YKPLLKVLDERKEYIRKNLTK-ASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYI 116 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=30.46 E-value=21 Score=32.24 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=0.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|.+|||||+.+
T Consensus 2 i~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 2 LQIVGPKNSGKTTLI 16 (155)
T ss_pred EEEECCCCCCHHHHH
Done!