Query 043730
Match_columns 480
No_of_seqs 316 out of 2093
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:15:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 8.9E-94 3.1E-98 731.1 25.1 345 48-420 8-359 (365)
2 3bfn_A Kinesin-like protein KI 100.0 8.3E-93 2.8E-97 726.5 23.5 341 44-409 14-362 (388)
3 1goj_A Kinesin, kinesin heavy 100.0 3E-92 1E-96 718.0 27.2 336 50-409 5-345 (355)
4 3b6u_A Kinesin-like protein KI 100.0 8.1E-93 2.8E-97 724.4 22.5 345 47-412 17-370 (372)
5 2vvg_A Kinesin-2; motor protei 100.0 8.1E-92 2.8E-96 713.0 27.1 332 50-406 3-347 (350)
6 3cob_A Kinesin heavy chain-lik 100.0 1.2E-91 4.1E-96 715.7 28.0 329 48-404 2-337 (369)
7 1x88_A Kinesin-like protein KI 100.0 2.8E-92 9.6E-97 719.8 21.8 336 49-402 6-358 (359)
8 2wbe_C Bipolar kinesin KRP-130 100.0 1.2E-91 4.3E-96 717.8 23.6 342 46-405 18-372 (373)
9 2owm_A Nckin3-434, related to 100.0 2.5E-91 8.6E-96 729.0 26.2 335 45-403 32-422 (443)
10 1bg2_A Kinesin; motor protein, 100.0 5E-91 1.7E-95 701.7 23.4 318 48-394 4-325 (325)
11 2zfi_A Kinesin-like protein KI 100.0 2.4E-90 8E-95 707.3 26.7 332 51-402 4-362 (366)
12 1t5c_A CENP-E protein, centrom 100.0 3.8E-90 1.3E-94 701.1 27.2 331 50-406 3-340 (349)
13 2h58_A Kinesin-like protein KI 100.0 1.7E-89 5.8E-94 692.0 26.7 321 48-395 1-329 (330)
14 3lre_A Kinesin-like protein KI 100.0 1.9E-89 6.5E-94 698.0 26.2 325 46-394 5-355 (355)
15 4a14_A Kinesin, kinesin-like p 100.0 3.7E-89 1.3E-93 694.1 25.1 326 49-392 9-344 (344)
16 2rep_A Kinesin-like protein KI 100.0 9.7E-89 3.3E-93 695.9 27.1 325 47-394 18-376 (376)
17 3t0q_A AGR253WP; kinesin, alph 100.0 1.5E-88 5.1E-93 690.4 27.2 321 49-397 3-347 (349)
18 1f9v_A Kinesin-like protein KA 100.0 2.1E-88 7.2E-93 688.3 26.7 320 50-399 2-346 (347)
19 3nwn_A Kinesin-like protein KI 100.0 4.7E-89 1.6E-93 694.9 19.1 328 46-394 19-359 (359)
20 2heh_A KIF2C protein; kinesin, 100.0 4.7E-88 1.6E-92 691.2 24.6 320 50-397 50-385 (387)
21 3gbj_A KIF13B protein; kinesin 100.0 1.3E-87 4.5E-92 684.2 25.4 321 51-393 1-349 (354)
22 1ry6_A Internal kinesin; kines 100.0 1.2E-87 4.1E-92 684.8 24.8 324 52-402 1-339 (360)
23 2nr8_A Kinesin-like protein KI 100.0 4.2E-88 1.4E-92 687.7 21.0 322 45-394 17-358 (358)
24 1v8k_A Kinesin-like protein KI 100.0 1.5E-87 5.1E-92 691.4 23.6 321 50-398 70-406 (410)
25 4etp_A Kinesin-like protein KA 100.0 8.9E-87 3E-91 689.0 25.7 322 49-399 57-402 (403)
26 3dc4_A Kinesin-like protein NO 100.0 3.8E-86 1.3E-90 669.9 23.3 309 48-396 19-337 (344)
27 3u06_A Protein claret segregat 100.0 3.6E-85 1.2E-89 676.9 24.6 317 49-398 57-386 (412)
28 4h1g_A Maltose binding protein 100.0 5.8E-80 2E-84 684.9 26.5 319 48-395 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 2.2E-33 7.6E-38 232.5 3.7 97 321-417 2-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 3.5E-31 1.2E-35 226.8 9.9 96 324-419 1-97 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.5E-26 5.2E-31 222.5 6.4 262 48-399 21-294 (298)
32 3ec2_A DNA replication protein 95.2 0.0063 2.1E-07 54.5 1.7 51 96-147 5-55 (180)
33 2w58_A DNAI, primosome compone 94.0 0.02 6.7E-07 52.1 2.1 50 97-147 21-71 (202)
34 2qgz_A Helicase loader, putati 93.3 0.03 1E-06 55.1 2.2 50 97-147 120-169 (308)
35 2r62_A Cell division protease 89.3 0.21 7.1E-06 47.3 3.4 51 96-147 6-61 (268)
36 3t15_A Ribulose bisphosphate c 88.7 0.14 4.6E-06 49.9 1.5 37 111-147 13-53 (293)
37 1jbk_A CLPB protein; beta barr 88.5 0.19 6.5E-06 44.0 2.3 28 120-147 33-60 (195)
38 2bjv_A PSP operon transcriptio 88.5 0.14 4.8E-06 48.5 1.5 45 97-147 2-46 (265)
39 2p65_A Hypothetical protein PF 86.7 0.21 7.2E-06 43.7 1.4 28 120-147 33-60 (187)
40 3b9p_A CG5977-PA, isoform A; A 86.6 0.23 7.9E-06 47.7 1.8 51 97-147 17-71 (297)
41 3h4m_A Proteasome-activating n 86.6 0.24 8.1E-06 47.3 1.8 51 97-147 13-68 (285)
42 1l8q_A Chromosomal replication 86.5 0.34 1.2E-05 47.3 3.0 49 96-147 6-54 (324)
43 3te6_A Regulatory protein SIR3 86.1 0.19 6.4E-06 49.8 0.9 23 125-147 40-62 (318)
44 2kjq_A DNAA-related protein; s 86.0 0.4 1.4E-05 41.6 2.9 17 131-147 37-53 (149)
45 3cf0_A Transitional endoplasmi 86.0 0.26 8.9E-06 47.9 1.8 51 97-147 11-66 (301)
46 1ixz_A ATP-dependent metallopr 85.8 0.16 5.5E-06 47.8 0.2 51 96-147 11-66 (254)
47 1g8p_A Magnesium-chelatase 38 85.2 0.26 8.8E-06 48.4 1.4 44 96-147 19-62 (350)
48 4b4t_K 26S protease regulatory 85.1 0.35 1.2E-05 49.8 2.3 79 98-176 169-265 (428)
49 2v1u_A Cell division control p 84.7 0.33 1.1E-05 48.0 1.9 38 109-147 23-61 (387)
50 3d8b_A Fidgetin-like protein 1 83.5 0.31 1.1E-05 48.7 1.0 51 97-147 80-134 (357)
51 1d2n_A N-ethylmaleimide-sensit 82.8 0.68 2.3E-05 43.9 3.2 21 127-147 61-81 (272)
52 1lv7_A FTSH; alpha/beta domain 82.4 0.34 1.2E-05 45.5 0.9 51 96-147 7-62 (257)
53 3bos_A Putative DNA replicatio 82.3 0.54 1.8E-05 43.0 2.2 46 97-147 24-69 (242)
54 4b4t_L 26S protease subunit RP 82.2 0.59 2E-05 48.2 2.6 80 97-176 177-274 (437)
55 2qz4_A Paraplegin; AAA+, SPG7, 82.1 0.28 9.5E-06 46.0 0.1 19 129-147 38-56 (262)
56 1xwi_A SKD1 protein; VPS4B, AA 81.8 0.43 1.5E-05 47.0 1.3 50 98-147 9-62 (322)
57 1iy2_A ATP-dependent metallopr 81.8 0.25 8.5E-06 47.3 -0.4 50 97-147 36-90 (278)
58 4b4t_M 26S protease regulatory 81.5 0.54 1.9E-05 48.5 2.0 51 97-147 177-232 (434)
59 1qde_A EIF4A, translation init 81.4 0.52 1.8E-05 43.0 1.7 24 121-146 44-67 (224)
60 4b4t_J 26S protease regulatory 81.2 0.46 1.6E-05 48.5 1.3 80 98-177 145-242 (405)
61 3eie_A Vacuolar protein sortin 80.9 0.5 1.7E-05 46.3 1.4 51 97-147 14-68 (322)
62 2z4s_A Chromosomal replication 80.8 0.73 2.5E-05 47.5 2.7 49 95-147 99-147 (440)
63 1vec_A ATP-dependent RNA helic 80.7 0.62 2.1E-05 41.8 1.9 24 122-147 34-57 (206)
64 2x8a_A Nuclear valosin-contain 80.6 0.26 8.9E-06 47.4 -0.7 51 97-147 6-61 (274)
65 2gxq_A Heat resistant RNA depe 80.5 0.61 2.1E-05 41.9 1.8 24 122-147 32-55 (207)
66 3vem_A Helicase protein MOM1; 80.5 18 0.00062 29.7 10.3 42 414-455 38-79 (115)
67 2chg_A Replication factor C sm 79.9 0.68 2.3E-05 41.4 1.9 21 127-147 35-55 (226)
68 3vfd_A Spastin; ATPase, microt 79.6 0.49 1.7E-05 47.7 0.9 51 97-147 111-165 (389)
69 4b4t_H 26S protease regulatory 79.5 0.75 2.5E-05 47.7 2.3 80 97-176 205-302 (467)
70 2qp9_X Vacuolar protein sortin 79.5 0.73 2.5E-05 45.9 2.1 51 97-147 47-101 (355)
71 1p9r_A General secretion pathw 79.1 0.74 2.5E-05 47.2 2.1 27 121-147 158-184 (418)
72 3ghg_A Fibrinogen alpha chain; 78.7 4.2 0.00014 42.1 7.4 50 430-479 103-154 (562)
73 3dkp_A Probable ATP-dependent 78.3 0.77 2.6E-05 42.6 1.8 24 121-146 59-82 (245)
74 3bor_A Human initiation factor 78.1 0.49 1.7E-05 44.0 0.3 25 121-147 60-84 (237)
75 1fnn_A CDC6P, cell division co 77.8 1.1 3.9E-05 44.2 3.0 45 98-147 14-61 (389)
76 1sxj_C Activator 1 40 kDa subu 77.5 0.9 3.1E-05 44.6 2.1 40 100-147 24-63 (340)
77 3uk6_A RUVB-like 2; hexameric 77.1 0.85 2.9E-05 45.0 1.8 46 97-147 40-87 (368)
78 3jvv_A Twitching mobility prot 76.5 0.85 2.9E-05 45.7 1.6 27 121-147 114-140 (356)
79 2pl3_A Probable ATP-dependent 76.3 0.95 3.2E-05 41.7 1.8 25 121-147 55-79 (236)
80 4etp_B Spindle POLE BODY-assoc 75.9 3.7 0.00012 40.1 5.7 123 48-198 56-183 (333)
81 1t6n_A Probable ATP-dependent 75.8 0.96 3.3E-05 41.1 1.7 24 122-147 45-68 (220)
82 3syl_A Protein CBBX; photosynt 75.8 0.74 2.5E-05 44.3 0.9 20 128-147 65-84 (309)
83 2qby_A CDC6 homolog 1, cell di 75.7 1 3.4E-05 44.3 1.9 20 128-147 43-62 (386)
84 4b4t_I 26S protease regulatory 75.2 0.91 3.1E-05 46.7 1.4 79 98-176 179-275 (437)
85 3ly5_A ATP-dependent RNA helic 75.1 0.82 2.8E-05 43.3 1.0 25 121-147 84-108 (262)
86 3oja_B Anopheles plasmodium-re 75.1 43 0.0015 35.1 14.7 13 467-479 569-581 (597)
87 3iuy_A Probable ATP-dependent 74.4 1.1 3.8E-05 41.0 1.7 24 122-147 51-74 (228)
88 2qby_B CDC6 homolog 3, cell di 74.1 1.3 4.4E-05 43.8 2.2 45 98-147 17-62 (384)
89 3fmo_B ATP-dependent RNA helic 73.9 1.2 4.1E-05 43.2 1.9 27 121-147 122-148 (300)
90 3b6e_A Interferon-induced heli 73.9 0.58 2E-05 42.1 -0.4 34 104-147 32-65 (216)
91 2c9o_A RUVB-like 1; hexameric 73.7 1.3 4.6E-05 45.6 2.3 46 97-147 33-80 (456)
92 1wrb_A DJVLGB; RNA helicase, D 73.7 1.2 4.1E-05 41.6 1.7 24 122-147 54-77 (253)
93 2zan_A Vacuolar protein sortin 73.6 0.89 3E-05 46.8 0.9 51 97-147 130-184 (444)
94 2eyu_A Twitching motility prot 72.6 1.4 4.9E-05 41.9 2.1 19 129-147 24-42 (261)
95 1deq_A Fibrinogen (alpha chain 72.3 20 0.00069 35.6 10.1 16 408-423 113-128 (390)
96 2oxc_A Probable ATP-dependent 71.9 1.4 4.8E-05 40.5 1.7 23 122-146 55-77 (230)
97 3ber_A Probable ATP-dependent 71.4 1.5 5E-05 41.2 1.8 24 122-147 74-97 (249)
98 3eiq_A Eukaryotic initiation f 71.4 1.6 5.3E-05 43.5 2.1 25 121-147 70-94 (414)
99 3llm_A ATP-dependent RNA helic 71.2 1.2 4.2E-05 41.2 1.2 25 121-147 69-93 (235)
100 3hu3_A Transitional endoplasmi 70.6 1.5 5.2E-05 45.8 1.9 50 98-147 201-255 (489)
101 3fe2_A Probable ATP-dependent 70.5 1.2 4.2E-05 41.2 1.0 24 122-147 60-83 (242)
102 1tue_A Replication protein E1; 70.2 1 3.5E-05 41.7 0.4 26 122-147 48-75 (212)
103 1sxj_D Activator 1 41 kDa subu 70.0 1.5 5E-05 42.8 1.5 41 99-147 35-75 (353)
104 3pvs_A Replication-associated 69.3 2 6.9E-05 44.3 2.4 43 100-147 25-67 (447)
105 1u0j_A DNA replication protein 69.0 2 6.9E-05 41.2 2.2 28 120-147 91-121 (267)
106 3co5_A Putative two-component 68.7 1.9 6.3E-05 36.7 1.7 18 130-147 27-44 (143)
107 2fz4_A DNA repair protein RAD2 68.3 1.9 6.6E-05 40.1 1.9 39 99-147 87-125 (237)
108 3pfi_A Holliday junction ATP-d 68.1 2.2 7.6E-05 41.5 2.4 44 99-147 27-72 (338)
109 1q0u_A Bstdead; DEAD protein, 68.1 1.1 3.6E-05 40.9 -0.1 24 122-147 35-58 (219)
110 3fmp_B ATP-dependent RNA helic 67.9 1.9 6.6E-05 44.3 1.9 26 121-146 122-147 (479)
111 1njg_A DNA polymerase III subu 67.1 2 7E-05 38.5 1.7 17 131-147 46-62 (250)
112 2j0s_A ATP-dependent RNA helic 67.0 1.9 6.5E-05 43.0 1.6 24 122-147 68-91 (410)
113 2ewv_A Twitching motility prot 66.9 1.9 6.3E-05 43.4 1.5 27 121-147 127-153 (372)
114 3i00_A HIP-I, huntingtin-inter 66.9 53 0.0018 27.3 10.2 24 406-429 13-36 (120)
115 3n70_A Transport activator; si 66.8 1.8 6.3E-05 36.8 1.3 20 128-147 22-41 (145)
116 3fht_A ATP-dependent RNA helic 66.7 2.1 7E-05 42.5 1.8 26 121-146 55-80 (412)
117 1gvn_B Zeta; postsegregational 66.6 3.6 0.00012 39.5 3.5 30 118-147 16-50 (287)
118 1hqc_A RUVB; extended AAA-ATPa 66.1 2.9 9.9E-05 40.2 2.7 44 99-147 10-55 (324)
119 3pey_A ATP-dependent RNA helic 66.1 2.1 7.1E-05 42.1 1.7 26 122-147 36-61 (395)
120 3pxg_A Negative regulator of g 66.0 3.1 0.00011 43.0 3.0 41 99-147 178-218 (468)
121 2r44_A Uncharacterized protein 66.0 1.6 5.4E-05 42.6 0.7 34 108-147 30-63 (331)
122 1ofh_A ATP-dependent HSL prote 65.8 2 6.9E-05 40.9 1.5 18 130-147 50-67 (310)
123 2ce7_A Cell division protein F 64.3 1.8 6.2E-05 45.1 0.9 51 96-147 11-66 (476)
124 1iqp_A RFCS; clamp loader, ext 63.9 2.5 8.5E-05 40.5 1.7 40 100-147 24-63 (327)
125 2z0m_A 337AA long hypothetical 63.8 2.4 8.2E-05 40.6 1.6 24 122-147 25-48 (337)
126 3mq7_A Bone marrow stromal ant 63.5 47 0.0016 27.3 8.9 37 418-454 63-99 (121)
127 1m1j_A Fibrinogen alpha subuni 63.4 63 0.0022 32.9 11.7 33 425-457 99-131 (491)
128 1w5s_A Origin recognition comp 63.2 3.4 0.00012 41.0 2.7 25 123-147 40-69 (412)
129 2oap_1 GSPE-2, type II secreti 63.1 2.4 8.3E-05 44.5 1.5 19 127-147 259-277 (511)
130 1s2m_A Putative ATP-dependent 62.9 2.4 8.1E-05 42.0 1.4 24 122-147 52-75 (400)
131 2dhr_A FTSH; AAA+ protein, hex 62.8 1.8 6E-05 45.5 0.4 50 97-147 27-81 (499)
132 4fcw_A Chaperone protein CLPB; 62.4 2.1 7E-05 41.0 0.8 17 131-147 48-64 (311)
133 2chq_A Replication factor C sm 62.3 2.4 8.3E-05 40.4 1.3 21 127-147 35-55 (319)
134 3h1t_A Type I site-specific re 62.2 2.8 9.7E-05 44.4 1.9 24 123-147 192-215 (590)
135 2i4i_A ATP-dependent RNA helic 62.0 2.7 9.3E-05 41.8 1.7 24 122-147 46-69 (417)
136 3oiy_A Reverse gyrase helicase 61.3 3 0.0001 41.8 1.8 24 121-146 29-52 (414)
137 4b3f_X DNA-binding protein smu 61.2 2.8 9.5E-05 45.2 1.6 26 121-147 197-222 (646)
138 3u61_B DNA polymerase accessor 61.0 4.6 0.00016 39.0 3.1 18 130-147 48-65 (324)
139 1n0w_A DNA repair protein RAD5 60.0 3.1 0.00011 38.0 1.6 30 118-147 9-41 (243)
140 3cf2_A TER ATPase, transitiona 59.7 5.3 0.00018 44.3 3.6 79 97-175 200-296 (806)
141 3fho_A ATP-dependent RNA helic 59.7 3.1 0.00011 43.4 1.6 26 121-146 149-174 (508)
142 1rif_A DAR protein, DNA helica 59.1 2.4 8.2E-05 40.3 0.6 22 124-147 124-145 (282)
143 2jlq_A Serine protease subunit 58.8 3.3 0.00011 42.5 1.6 25 121-146 11-35 (451)
144 1xti_A Probable ATP-dependent 58.4 3.5 0.00012 40.5 1.7 25 121-147 38-62 (391)
145 1in4_A RUVB, holliday junction 57.7 4.1 0.00014 39.9 2.0 16 132-147 53-68 (334)
146 2p5t_B PEZT; postsegregational 57.5 4.1 0.00014 38.2 1.9 37 111-147 12-49 (253)
147 1ojl_A Transcriptional regulat 57.2 4.2 0.00014 39.4 2.0 20 128-147 23-42 (304)
148 3i5x_A ATP-dependent RNA helic 56.8 4.3 0.00015 42.5 2.2 26 121-146 102-127 (563)
149 2db3_A ATP-dependent RNA helic 56.5 3.8 0.00013 41.7 1.6 24 121-146 86-109 (434)
150 1jr3_A DNA polymerase III subu 56.4 6 0.0002 38.7 3.0 18 130-147 38-55 (373)
151 1qvr_A CLPB protein; coiled co 56.2 3.1 0.0001 46.5 0.9 41 99-147 168-208 (854)
152 1c4o_A DNA nucleotide excision 56.1 6.2 0.00021 42.7 3.3 44 98-147 2-45 (664)
153 2v1x_A ATP-dependent DNA helic 55.6 5 0.00017 42.9 2.4 24 121-146 52-75 (591)
154 3b85_A Phosphate starvation-in 55.4 4.5 0.00015 37.0 1.8 25 121-147 15-39 (208)
155 2w0m_A SSO2452; RECA, SSPF, un 55.3 4.4 0.00015 36.5 1.7 28 120-147 10-40 (235)
156 1sxj_B Activator 1 37 kDa subu 55.3 4.3 0.00015 38.7 1.7 21 127-147 39-59 (323)
157 3c8u_A Fructokinase; YP_612366 55.1 4.7 0.00016 36.3 1.9 19 129-147 21-39 (208)
158 4gp7_A Metallophosphoesterase; 54.9 3.2 0.00011 36.3 0.7 16 132-147 11-26 (171)
159 2dfs_A Myosin-5A; myosin-V, in 54.4 62 0.0021 37.1 11.3 21 127-147 153-173 (1080)
160 1sxj_E Activator 1 40 kDa subu 54.3 4 0.00014 39.8 1.3 15 133-147 39-53 (354)
161 2cvh_A DNA repair and recombin 54.2 4.6 0.00016 36.2 1.6 29 119-147 6-37 (220)
162 1fuu_A Yeast initiation factor 54.1 2.6 8.8E-05 41.5 -0.1 24 121-146 51-74 (394)
163 4a2p_A RIG-I, retinoic acid in 53.8 4.6 0.00016 41.8 1.8 25 121-147 15-39 (556)
164 1hv8_A Putative ATP-dependent 52.4 4.3 0.00015 39.3 1.2 25 122-147 37-61 (367)
165 4dci_A Uncharacterized protein 51.9 1.2E+02 0.004 26.2 10.3 8 398-405 16-23 (150)
166 1w36_D RECD, exodeoxyribonucle 51.8 3.8 0.00013 43.9 0.7 18 130-147 164-181 (608)
167 3tbk_A RIG-I helicase domain; 51.7 5.2 0.00018 41.2 1.8 24 122-147 13-36 (555)
168 2fwr_A DNA repair protein RAD2 51.5 5.3 0.00018 40.7 1.8 34 104-147 92-125 (472)
169 3upu_A ATP-dependent DNA helic 51.2 6.1 0.00021 40.5 2.2 36 107-147 27-62 (459)
170 1ypw_A Transitional endoplasmi 51.0 6.1 0.00021 43.8 2.3 52 96-147 199-255 (806)
171 4a74_A DNA repair and recombin 50.1 5.6 0.00019 35.8 1.5 29 119-147 11-42 (231)
172 1rz3_A Hypothetical protein rb 50.1 6.4 0.00022 35.2 1.9 18 130-147 22-39 (201)
173 2qag_C Septin-7; cell cycle, c 50.0 4.5 0.00016 41.3 0.9 23 125-147 26-48 (418)
174 4ag6_A VIRB4 ATPase, type IV s 50.0 4 0.00014 40.9 0.5 17 131-147 36-52 (392)
175 1um8_A ATP-dependent CLP prote 49.9 4.1 0.00014 40.4 0.6 18 130-147 72-89 (376)
176 4gl2_A Interferon-induced heli 49.9 5.8 0.0002 42.7 1.8 25 121-147 15-39 (699)
177 3mq9_A Bone marrow stromal ant 49.3 1.2E+02 0.0042 30.6 11.8 20 405-424 370-389 (471)
178 3lw7_A Adenylate kinase relate 49.3 5 0.00017 34.2 1.0 16 132-147 3-18 (179)
179 3hws_A ATP-dependent CLP prote 49.1 4.3 0.00015 40.1 0.6 18 130-147 51-68 (363)
180 3sqw_A ATP-dependent RNA helic 49.0 6.8 0.00023 41.3 2.2 26 121-146 51-76 (579)
181 2gk6_A Regulator of nonsense t 48.9 5.7 0.00019 42.6 1.6 17 131-147 196-212 (624)
182 3b9q_A Chloroplast SRP recepto 48.3 7.8 0.00027 37.6 2.3 17 131-147 101-117 (302)
183 2r8r_A Sensor protein; KDPD, P 48.2 4.5 0.00015 37.8 0.5 17 131-147 7-23 (228)
184 3tr0_A Guanylate kinase, GMP k 48.2 4.8 0.00016 35.7 0.7 16 132-147 9-24 (205)
185 3tau_A Guanylate kinase, GMP k 47.6 4.9 0.00017 36.3 0.7 16 132-147 10-25 (208)
186 3e70_C DPA, signal recognition 47.5 9.6 0.00033 37.4 2.8 18 130-147 129-146 (328)
187 2dr3_A UPF0273 protein PH0284; 47.5 5.5 0.00019 36.3 1.0 28 120-147 10-40 (247)
188 1kgd_A CASK, peripheral plasma 47.4 4.9 0.00017 35.3 0.6 16 132-147 7-22 (180)
189 3a00_A Guanylate kinase, GMP k 47.1 4.8 0.00016 35.6 0.5 15 133-147 4-18 (186)
190 1wp9_A ATP-dependent RNA helic 47.1 6.6 0.00023 39.2 1.6 23 122-147 18-40 (494)
191 1gm5_A RECG; helicase, replica 46.6 7.2 0.00025 43.1 1.9 37 107-147 370-406 (780)
192 1f5n_A Interferon-induced guan 46.5 1.1E+02 0.0037 32.5 11.0 21 127-147 35-55 (592)
193 1ye8_A Protein THEP1, hypothet 45.5 5.2 0.00018 35.5 0.5 15 133-147 3-17 (178)
194 2qnr_A Septin-2, protein NEDD5 45.4 4.6 0.00016 39.1 0.1 24 124-147 12-35 (301)
195 3sop_A Neuronal-specific septi 45.3 5.2 0.00018 38.1 0.5 19 129-147 1-19 (270)
196 1e9r_A Conjugal transfer prote 45.3 4.5 0.00015 41.0 0.0 19 129-147 52-70 (437)
197 1lvg_A Guanylate kinase, GMP k 45.3 5.2 0.00018 35.9 0.4 16 132-147 6-21 (198)
198 3viq_A SWI5-dependent recombin 44.8 1.2E+02 0.004 25.2 8.7 17 453-469 41-57 (122)
199 1r6b_X CLPA protein; AAA+, N-t 44.7 8.8 0.0003 42.0 2.2 41 99-147 184-224 (758)
200 1ly1_A Polynucleotide kinase; 44.6 6.3 0.00022 33.9 0.9 16 132-147 4-19 (181)
201 3lfu_A DNA helicase II; SF1 he 44.6 5.8 0.0002 42.3 0.8 19 129-147 21-39 (647)
202 1zp6_A Hypothetical protein AT 44.2 5.3 0.00018 35.0 0.3 16 132-147 11-26 (191)
203 1rj9_A FTSY, signal recognitio 43.9 6.7 0.00023 38.1 1.0 17 131-147 103-119 (304)
204 3pxi_A Negative regulator of g 43.8 10 0.00035 41.5 2.6 41 99-147 178-218 (758)
205 2ykg_A Probable ATP-dependent 43.8 8.6 0.00029 41.3 2.0 24 122-147 22-45 (696)
206 1qhx_A CPT, protein (chloramph 43.8 6.6 0.00023 33.9 0.9 17 131-147 4-20 (178)
207 3pxi_A Negative regulator of g 43.8 11 0.00036 41.4 2.7 16 132-147 523-538 (758)
208 3e1s_A Exodeoxyribonuclease V, 43.5 7.6 0.00026 41.3 1.5 17 131-147 205-221 (574)
209 3ghg_A Fibrinogen alpha chain; 43.4 81 0.0028 32.7 8.9 40 430-470 114-153 (562)
210 3nbx_X ATPase RAVA; AAA+ ATPas 43.3 8.4 0.00029 40.2 1.7 25 121-147 34-58 (500)
211 3trf_A Shikimate kinase, SK; a 43.0 7 0.00024 34.1 0.9 16 132-147 7-22 (185)
212 1yks_A Genome polyprotein [con 42.9 7.7 0.00026 39.6 1.4 21 125-147 5-25 (440)
213 2bdt_A BH3686; alpha-beta prot 42.1 6.7 0.00023 34.5 0.7 16 132-147 4-19 (189)
214 3iij_A Coilin-interacting nucl 42.0 7 0.00024 34.0 0.7 16 132-147 13-28 (180)
215 2j41_A Guanylate kinase; GMP, 41.7 7 0.00024 34.6 0.7 16 132-147 8-23 (207)
216 2ehv_A Hypothetical protein PH 41.7 6.8 0.00023 35.8 0.6 16 132-147 32-47 (251)
217 2xzl_A ATP-dependent helicase 41.7 8.8 0.0003 42.6 1.6 16 132-147 377-392 (802)
218 1sxj_A Activator 1 95 kDa subu 41.5 8.1 0.00028 40.3 1.3 17 131-147 78-94 (516)
219 4a4z_A Antiviral helicase SKI2 41.3 9.9 0.00034 43.3 2.0 32 105-146 39-70 (997)
220 3lnc_A Guanylate kinase, GMP k 40.9 8.4 0.00029 35.2 1.1 16 132-147 29-44 (231)
221 1qvr_A CLPB protein; coiled co 40.8 13 0.00046 41.3 3.0 17 131-147 589-605 (854)
222 1r6b_X CLPA protein; AAA+, N-t 40.4 13 0.00044 40.6 2.8 17 131-147 489-505 (758)
223 2wjy_A Regulator of nonsense t 40.2 9.3 0.00032 42.4 1.6 17 131-147 372-388 (800)
224 1znw_A Guanylate kinase, GMP k 40.1 7.5 0.00026 34.9 0.7 15 133-147 23-37 (207)
225 2d7d_A Uvrabc system protein B 39.8 17 0.00058 39.2 3.5 46 97-147 4-49 (661)
226 1uaa_A REP helicase, protein ( 39.7 8.2 0.00028 41.6 1.0 18 130-147 15-32 (673)
227 2i3b_A HCR-ntpase, human cance 39.4 7.4 0.00025 34.9 0.5 16 132-147 3-18 (189)
228 2yhs_A FTSY, cell division pro 38.9 14 0.00048 38.5 2.6 16 132-147 295-310 (503)
229 2pt7_A CAG-ALFA; ATPase, prote 38.7 6.8 0.00023 38.5 0.1 19 127-147 170-188 (330)
230 4a2q_A RIG-I, retinoic acid in 38.6 11 0.00037 41.6 1.8 24 122-147 257-280 (797)
231 2gza_A Type IV secretion syste 38.6 6.7 0.00023 39.0 0.1 20 126-147 173-192 (361)
232 2px0_A Flagellar biosynthesis 38.5 8.1 0.00028 37.3 0.7 17 131-147 106-122 (296)
233 1lkx_A Myosin IE heavy chain; 38.5 13 0.00044 40.5 2.3 21 127-147 91-111 (697)
234 4a2w_A RIG-I, retinoic acid in 38.3 11 0.00036 42.6 1.7 35 103-147 246-280 (936)
235 1oyw_A RECQ helicase, ATP-depe 38.1 6.3 0.00022 41.3 -0.2 25 121-147 33-57 (523)
236 1z6g_A Guanylate kinase; struc 38.0 7.9 0.00027 35.3 0.5 15 133-147 26-40 (218)
237 1kht_A Adenylate kinase; phosp 37.9 8.9 0.0003 33.3 0.8 16 132-147 5-20 (192)
238 3vaa_A Shikimate kinase, SK; s 37.8 9.5 0.00032 33.9 1.0 16 132-147 27-42 (199)
239 1kag_A SKI, shikimate kinase I 37.8 9 0.00031 32.9 0.8 16 132-147 6-21 (173)
240 2qen_A Walker-type ATPase; unk 37.7 11 0.00037 36.1 1.5 17 131-147 32-48 (350)
241 2ze6_A Isopentenyl transferase 37.6 9.3 0.00032 35.8 0.9 16 132-147 3-18 (253)
242 2orw_A Thymidine kinase; TMTK, 37.6 7.2 0.00025 34.7 0.1 16 132-147 5-20 (184)
243 2oca_A DAR protein, ATP-depend 37.6 8.4 0.00029 39.7 0.6 33 105-147 113-145 (510)
244 1ik9_A DNA repair protein XRCC 37.6 2.4E+02 0.0081 25.7 12.6 17 375-391 117-133 (213)
245 3kta_A Chromosome segregation 37.5 7.7 0.00026 33.8 0.3 16 132-147 28-43 (182)
246 1f2t_A RAD50 ABC-ATPase; DNA d 37.4 9.5 0.00033 32.6 0.9 15 133-147 26-40 (149)
247 3uie_A Adenylyl-sulfate kinase 37.2 11 0.00039 33.4 1.4 18 130-147 25-42 (200)
248 2v6i_A RNA helicase; membrane, 37.1 12 0.0004 38.1 1.6 16 132-147 4-19 (431)
249 3oja_B Anopheles plasmodium-re 37.1 1.9E+02 0.0066 30.0 11.3 24 368-391 391-414 (597)
250 1j8m_F SRP54, signal recogniti 37.0 26 0.00089 33.7 4.0 16 132-147 100-115 (297)
251 1w9i_A Myosin II heavy chain; 37.0 14 0.00048 40.7 2.3 21 127-147 169-189 (770)
252 2og2_A Putative signal recogni 36.9 8.9 0.00031 38.2 0.7 17 131-147 158-174 (359)
253 1v5w_A DMC1, meiotic recombina 36.9 13 0.00045 36.5 2.0 30 118-147 107-139 (343)
254 2b8t_A Thymidine kinase; deoxy 36.7 9.8 0.00033 35.2 0.9 18 130-147 12-29 (223)
255 1moz_A ARL1, ADP-ribosylation 36.7 12 0.00039 32.1 1.3 27 121-147 8-35 (183)
256 1odf_A YGR205W, hypothetical 3 36.4 19 0.00066 34.5 3.0 36 112-147 11-48 (290)
257 1knq_A Gluconate kinase; ALFA/ 36.4 9.5 0.00032 32.9 0.7 16 132-147 10-25 (175)
258 3kb2_A SPBC2 prophage-derived 36.3 10 0.00035 32.3 0.9 16 132-147 3-18 (173)
259 2v26_A Myosin VI; calmodulin-b 36.1 15 0.00051 40.6 2.3 21 127-147 137-157 (784)
260 2eyq_A TRCF, transcription-rep 35.9 16 0.00056 42.1 2.8 25 122-146 616-640 (1151)
261 2va8_A SSO2462, SKI2-type heli 35.9 13 0.00043 40.3 1.7 31 108-147 33-63 (715)
262 1i84_S Smooth muscle myosin he 35.8 17 0.00057 42.2 2.8 21 127-147 166-186 (1184)
263 2r2a_A Uncharacterized protein 35.7 9 0.00031 34.7 0.5 16 132-147 7-22 (199)
264 3t5d_A Septin-7; GTP-binding p 35.5 9.2 0.00032 36.1 0.5 21 127-147 5-25 (274)
265 3kl4_A SRP54, signal recogniti 35.5 25 0.00086 35.9 3.8 18 130-147 97-114 (433)
266 2z83_A Helicase/nucleoside tri 35.3 14 0.00048 37.8 1.9 15 132-146 23-37 (459)
267 1vma_A Cell division protein F 35.1 9.8 0.00034 37.0 0.6 17 131-147 105-121 (306)
268 1kk8_A Myosin heavy chain, str 35.0 15 0.00053 40.8 2.3 21 127-147 166-186 (837)
269 3dm5_A SRP54, signal recogniti 34.8 24 0.00084 36.1 3.6 18 130-147 100-117 (443)
270 1gku_B Reverse gyrase, TOP-RG; 34.7 14 0.00049 42.2 2.0 23 121-145 64-86 (1054)
271 2whx_A Serine protease/ntpase/ 34.6 15 0.00051 39.4 2.0 24 122-147 180-203 (618)
272 2fna_A Conserved hypothetical 34.5 11 0.00039 36.1 1.0 17 131-147 31-47 (357)
273 3crv_A XPD/RAD3 related DNA he 34.3 15 0.00052 38.5 2.0 36 106-147 4-39 (551)
274 2qor_A Guanylate kinase; phosp 34.3 11 0.00037 33.7 0.8 16 132-147 14-29 (204)
275 1y63_A LMAJ004144AAA protein; 34.2 11 0.00037 33.1 0.7 16 132-147 12-27 (184)
276 1w7j_A Myosin VA; motor protei 34.1 17 0.00057 40.3 2.3 21 127-147 153-173 (795)
277 3cm0_A Adenylate kinase; ATP-b 33.9 12 0.00041 32.5 1.0 16 132-147 6-21 (186)
278 2zj8_A DNA helicase, putative 33.7 9.7 0.00033 41.3 0.4 31 108-147 26-56 (720)
279 1tev_A UMP-CMP kinase; ploop, 33.7 11 0.00038 32.7 0.7 16 132-147 5-20 (196)
280 1htw_A HI0065; nucleotide-bind 33.6 11 0.00038 32.7 0.7 16 132-147 35-50 (158)
281 4db1_A Myosin-7; S1DC, cardiac 33.6 17 0.00059 40.0 2.3 21 127-147 168-188 (783)
282 2rhm_A Putative kinase; P-loop 33.4 10 0.00034 33.1 0.4 17 131-147 6-22 (193)
283 2ga8_A Hypothetical 39.9 kDa p 33.4 24 0.00083 35.1 3.2 21 127-147 21-41 (359)
284 2iut_A DNA translocase FTSK; n 33.3 10 0.00035 40.3 0.5 17 131-147 215-231 (574)
285 2qag_A Septin-2, protein NEDD5 33.2 12 0.00041 37.1 0.9 23 125-147 32-54 (361)
286 2ycu_A Non muscle myosin 2C, a 33.1 17 0.00058 41.3 2.2 21 127-147 143-163 (995)
287 1g8x_A Myosin II heavy chain f 33.1 16 0.00054 41.6 1.9 21 127-147 169-189 (1010)
288 1w4r_A Thymidine kinase; type 32.9 11 0.00039 34.1 0.7 26 122-147 12-38 (195)
289 1e6c_A Shikimate kinase; phosp 32.9 12 0.00041 32.0 0.7 16 132-147 4-19 (173)
290 2bbw_A Adenylate kinase 4, AK4 32.9 11 0.00039 34.7 0.6 17 131-147 28-44 (246)
291 2vl7_A XPD; helicase, unknown 32.6 19 0.00065 37.7 2.4 37 105-147 7-43 (540)
292 2qmh_A HPR kinase/phosphorylas 32.5 14 0.00047 33.8 1.1 22 126-147 30-51 (205)
293 2vli_A Antibiotic resistance p 32.5 13 0.00045 32.0 1.0 17 131-147 6-22 (183)
294 3rc3_A ATP-dependent RNA helic 32.4 12 0.0004 40.7 0.7 22 124-147 151-172 (677)
295 4eun_A Thermoresistant glucoki 32.1 12 0.00041 33.2 0.7 16 132-147 31-46 (200)
296 1s96_A Guanylate kinase, GMP k 31.9 12 0.00042 34.3 0.7 16 132-147 18-33 (219)
297 3tif_A Uncharacterized ABC tra 31.9 12 0.00041 34.6 0.7 15 133-147 34-48 (235)
298 2z43_A DNA repair and recombin 31.9 14 0.00049 35.8 1.2 30 118-147 92-124 (324)
299 2i1q_A DNA repair and recombin 31.8 16 0.00054 35.3 1.5 30 118-147 83-115 (322)
300 1xx6_A Thymidine kinase; NESG, 31.8 12 0.0004 33.8 0.5 16 132-147 10-25 (191)
301 4a15_A XPD helicase, ATP-depen 31.7 16 0.00055 39.1 1.7 38 104-147 2-39 (620)
302 1uf9_A TT1252 protein; P-loop, 31.6 14 0.00048 32.4 1.0 21 127-147 5-25 (203)
303 2xgj_A ATP-dependent RNA helic 31.4 14 0.0005 41.9 1.3 33 104-146 85-117 (1010)
304 1a5t_A Delta prime, HOLB; zinc 31.3 20 0.00069 34.8 2.2 34 110-147 7-41 (334)
305 1via_A Shikimate kinase; struc 31.3 13 0.00045 32.0 0.8 16 132-147 6-21 (175)
306 1pzn_A RAD51, DNA repair and r 31.3 16 0.00054 36.1 1.4 30 118-147 116-148 (349)
307 2iyv_A Shikimate kinase, SK; t 31.2 13 0.00045 32.3 0.7 16 132-147 4-19 (184)
308 3t61_A Gluconokinase; PSI-biol 30.8 14 0.00047 32.8 0.8 17 131-147 19-35 (202)
309 1svm_A Large T antigen; AAA+ f 30.8 20 0.00069 35.9 2.1 17 131-147 170-186 (377)
310 3m6a_A ATP-dependent protease 30.7 13 0.00043 39.2 0.6 18 130-147 108-125 (543)
311 4ddu_A Reverse gyrase; topoiso 30.6 20 0.00067 41.3 2.3 24 121-146 86-109 (1104)
312 2zts_A Putative uncharacterize 30.5 16 0.00056 33.0 1.3 28 120-147 17-47 (251)
313 4anj_A Unconventional myosin-V 30.4 21 0.0007 40.8 2.3 21 127-147 141-161 (1052)
314 2xau_A PRE-mRNA-splicing facto 30.4 13 0.00044 41.0 0.7 16 132-147 111-126 (773)
315 1nks_A Adenylate kinase; therm 30.4 12 0.00042 32.4 0.4 16 132-147 3-18 (194)
316 2pt5_A Shikimate kinase, SK; a 30.3 14 0.00048 31.4 0.8 16 132-147 2-17 (168)
317 3asz_A Uridine kinase; cytidin 30.2 12 0.00041 33.4 0.3 16 132-147 8-23 (211)
318 2ius_A DNA translocase FTSK; n 30.0 13 0.00043 39.1 0.5 17 131-147 168-184 (512)
319 2zr9_A Protein RECA, recombina 30.0 16 0.00056 36.0 1.3 30 118-147 45-78 (349)
320 1xjc_A MOBB protein homolog; s 29.6 14 0.00048 32.6 0.6 16 132-147 6-21 (169)
321 1gk6_A Vimentin; intermediate 29.5 1.5E+02 0.0052 21.0 7.6 25 408-432 7-31 (59)
322 2k48_A Nucleoprotein; viral pr 29.5 2.2E+02 0.0075 22.9 8.4 17 442-458 87-103 (107)
323 2p6r_A Afuhel308 helicase; pro 29.3 11 0.00036 40.9 -0.3 31 107-147 27-57 (702)
324 2yvu_A Probable adenylyl-sulfa 29.2 18 0.00062 31.5 1.3 17 131-147 14-30 (186)
325 3c3g_A Alpha/beta peptide with 29.1 1.1E+02 0.0037 19.2 4.4 11 430-440 18-28 (33)
326 3crm_A TRNA delta(2)-isopenten 29.1 16 0.00054 35.9 1.0 17 131-147 6-22 (323)
327 3l9o_A ATP-dependent RNA helic 28.7 17 0.00059 41.7 1.4 23 122-146 193-215 (1108)
328 3lay_A Zinc resistance-associa 28.7 1.6E+02 0.0054 26.0 7.4 14 416-429 75-88 (175)
329 1ypw_A Transitional endoplasmi 28.7 13 0.00044 41.2 0.3 51 97-147 473-528 (806)
330 1ukz_A Uridylate kinase; trans 28.6 15 0.00053 32.4 0.7 17 131-147 16-32 (203)
331 3a4m_A L-seryl-tRNA(SEC) kinas 28.6 16 0.00055 34.1 0.9 17 131-147 5-21 (260)
332 3qks_A DNA double-strand break 28.6 16 0.00055 32.9 0.9 16 132-147 25-40 (203)
333 1pjr_A PCRA; DNA repair, DNA r 28.4 14 0.00046 40.4 0.4 18 130-147 24-41 (724)
334 3k1j_A LON protease, ATP-depen 28.4 20 0.00068 38.1 1.7 39 99-147 39-77 (604)
335 2bwj_A Adenylate kinase 5; pho 28.4 14 0.00047 32.4 0.3 16 132-147 14-29 (199)
336 1aky_A Adenylate kinase; ATP:A 28.3 16 0.00053 33.0 0.7 16 132-147 6-21 (220)
337 3fb4_A Adenylate kinase; psych 28.2 16 0.00054 32.7 0.7 15 133-147 3-17 (216)
338 3umf_A Adenylate kinase; rossm 28.1 16 0.00056 33.5 0.8 15 132-146 31-45 (217)
339 1zu4_A FTSY; GTPase, signal re 28.0 15 0.00053 35.8 0.7 16 132-147 107-122 (320)
340 1cr0_A DNA primase/helicase; R 27.9 17 0.00058 34.4 1.0 27 121-147 24-52 (296)
341 3o8b_A HCV NS3 protease/helica 27.9 21 0.00071 38.7 1.7 16 132-147 234-249 (666)
342 3sr0_A Adenylate kinase; phosp 27.7 16 0.00056 33.1 0.7 14 133-146 3-16 (206)
343 3ney_A 55 kDa erythrocyte memb 27.6 16 0.00054 33.1 0.6 16 132-147 21-36 (197)
344 2ged_A SR-beta, signal recogni 27.6 15 0.00051 31.8 0.5 19 129-147 47-65 (193)
345 3c3f_A Alpha/beta peptide with 27.5 1.2E+02 0.0041 19.2 4.4 11 430-440 19-29 (34)
346 3a8t_A Adenylate isopentenyltr 27.4 18 0.00062 35.7 1.0 16 132-147 42-57 (339)
347 2v66_B Nuclear distribution pr 27.2 2.5E+02 0.0087 22.8 11.6 49 411-459 38-92 (111)
348 2b6h_A ADP-ribosylation factor 27.2 17 0.0006 31.7 0.8 28 120-147 19-46 (192)
349 1zd8_A GTP:AMP phosphotransfer 27.2 15 0.00051 33.3 0.3 16 132-147 9-24 (227)
350 1jjv_A Dephospho-COA kinase; P 27.1 17 0.00058 32.2 0.7 16 132-147 4-19 (206)
351 1qf9_A UMP/CMP kinase, protein 27.0 15 0.00052 31.8 0.4 16 132-147 8-23 (194)
352 1c9k_A COBU, adenosylcobinamid 26.9 16 0.00054 32.7 0.5 14 133-146 2-15 (180)
353 2gno_A DNA polymerase III, gam 26.9 20 0.0007 34.6 1.3 27 121-147 9-35 (305)
354 3aez_A Pantothenate kinase; tr 26.8 17 0.00057 35.3 0.7 17 131-147 91-107 (312)
355 3dl0_A Adenylate kinase; phosp 26.7 17 0.0006 32.4 0.7 15 133-147 3-17 (216)
356 2ce2_X GTPase HRAS; signaling 26.6 14 0.00048 30.6 0.1 16 132-147 5-20 (166)
357 1g41_A Heat shock protein HSLU 26.5 17 0.00059 37.3 0.7 17 131-147 51-67 (444)
358 2cdn_A Adenylate kinase; phosp 26.5 22 0.00074 31.4 1.3 20 128-147 18-37 (201)
359 1ak2_A Adenylate kinase isoenz 26.4 18 0.0006 33.1 0.7 17 131-147 17-33 (233)
360 2c95_A Adenylate kinase 1; tra 26.4 16 0.00053 31.9 0.3 16 132-147 11-26 (196)
361 3foz_A TRNA delta(2)-isopenten 25.9 20 0.00069 35.0 1.1 17 131-147 11-27 (316)
362 2dyk_A GTP-binding protein; GT 25.8 17 0.00058 30.1 0.5 16 132-147 3-18 (161)
363 2onk_A Molybdate/tungstate ABC 25.8 18 0.00061 33.7 0.6 16 132-147 26-41 (240)
364 2jaq_A Deoxyguanosine kinase; 25.8 19 0.00064 31.5 0.8 15 133-147 3-17 (205)
365 2v3c_C SRP54, signal recogniti 25.8 23 0.00077 36.2 1.5 17 131-147 100-116 (432)
366 2v9p_A Replication protein E1; 25.7 18 0.0006 35.2 0.6 16 132-147 128-143 (305)
367 2pcj_A ABC transporter, lipopr 25.6 16 0.00056 33.4 0.3 14 134-147 34-47 (224)
368 2pbr_A DTMP kinase, thymidylat 25.6 19 0.00066 31.2 0.8 15 133-147 3-17 (195)
369 1zuh_A Shikimate kinase; alpha 25.5 19 0.00065 30.7 0.7 16 132-147 9-24 (168)
370 3qf7_A RAD50; ABC-ATPase, ATPa 25.5 19 0.00066 35.6 0.9 14 134-147 27-40 (365)
371 1sq5_A Pantothenate kinase; P- 25.2 31 0.0011 33.1 2.3 17 131-147 81-97 (308)
372 1sgw_A Putative ABC transporte 25.1 17 0.0006 33.1 0.4 14 134-147 39-52 (214)
373 1g6h_A High-affinity branched- 25.1 19 0.00064 33.8 0.7 15 133-147 36-50 (257)
374 2cbz_A Multidrug resistance-as 25.1 19 0.00065 33.3 0.7 15 133-147 34-48 (237)
375 2vhj_A Ntpase P4, P4; non- hyd 24.9 22 0.00076 35.0 1.2 16 132-147 125-140 (331)
376 1ji0_A ABC transporter; ATP bi 24.9 19 0.00065 33.3 0.7 15 133-147 35-49 (240)
377 2plr_A DTMP kinase, probable t 24.7 20 0.00068 31.6 0.7 16 132-147 6-21 (213)
378 3gfo_A Cobalt import ATP-bindi 24.7 19 0.00066 34.3 0.6 14 134-147 38-51 (275)
379 3hr8_A Protein RECA; alpha and 24.7 22 0.00076 35.3 1.1 30 118-147 45-78 (356)
380 1np6_A Molybdopterin-guanine d 24.7 20 0.00068 31.6 0.7 16 132-147 8-23 (174)
381 3exa_A TRNA delta(2)-isopenten 24.6 21 0.00071 35.0 0.9 16 132-147 5-20 (322)
382 2if2_A Dephospho-COA kinase; a 24.6 18 0.0006 32.0 0.3 15 133-147 4-18 (204)
383 1ex7_A Guanylate kinase; subst 24.5 18 0.00063 32.3 0.5 15 133-147 4-18 (186)
384 1nlf_A Regulatory protein REPA 24.5 17 0.00059 34.1 0.3 25 123-147 21-47 (279)
385 2dfs_A Myosin-5A; myosin-V, in 24.4 4.1E+02 0.014 30.3 11.6 17 410-426 986-1002(1080)
386 1gs9_A Apolipoprotein E, APOE4 24.3 2.6E+02 0.009 24.2 8.0 49 407-455 87-139 (165)
387 2yz2_A Putative ABC transporte 24.3 20 0.00068 33.8 0.7 15 133-147 36-50 (266)
388 1b0u_A Histidine permease; ABC 24.2 20 0.00068 33.8 0.6 14 134-147 36-49 (262)
389 1z2a_A RAS-related protein RAB 24.0 19 0.00066 30.0 0.5 18 130-147 5-22 (168)
390 3o0z_A RHO-associated protein 24.0 3.6E+02 0.012 23.5 11.5 22 457-478 130-151 (168)
391 2ff7_A Alpha-hemolysin translo 23.9 20 0.0007 33.4 0.7 15 133-147 38-52 (247)
392 2ghi_A Transport protein; mult 23.7 21 0.00071 33.6 0.7 16 132-147 48-63 (260)
393 2w6b_A RHO guanine nucleotide 23.6 2E+02 0.0067 20.3 7.0 24 412-435 14-37 (56)
394 1mv5_A LMRA, multidrug resista 23.5 21 0.00071 33.1 0.6 15 133-147 31-45 (243)
395 1zak_A Adenylate kinase; ATP:A 23.5 19 0.00066 32.4 0.4 16 132-147 7-22 (222)
396 3f9v_A Minichromosome maintena 23.4 24 0.00082 37.5 1.2 16 132-147 329-344 (595)
397 2olj_A Amino acid ABC transpor 23.3 21 0.00072 33.7 0.6 15 133-147 53-67 (263)
398 1cke_A CK, MSSA, protein (cyti 23.2 23 0.0008 31.7 0.9 16 132-147 7-22 (227)
399 2pez_A Bifunctional 3'-phospho 23.1 23 0.0008 30.5 0.9 16 132-147 7-22 (179)
400 4g1u_C Hemin import ATP-bindin 23.1 22 0.00075 33.6 0.7 14 134-147 41-54 (266)
401 1u94_A RECA protein, recombina 23.0 29 0.001 34.3 1.7 30 118-147 47-80 (356)
402 3i00_A HIP-I, huntingtin-inter 23.0 3.2E+02 0.011 22.5 10.1 27 412-438 26-52 (120)
403 1vpl_A ABC transporter, ATP-bi 22.9 22 0.00075 33.4 0.6 15 133-147 44-58 (256)
404 3bs4_A Uncharacterized protein 22.8 36 0.0012 32.2 2.2 28 119-147 7-37 (260)
405 2pze_A Cystic fibrosis transme 22.8 22 0.00075 32.7 0.6 14 134-147 38-51 (229)
406 2yyz_A Sugar ABC transporter, 22.6 22 0.00076 35.3 0.7 14 134-147 33-46 (359)
407 2z0h_A DTMP kinase, thymidylat 22.4 24 0.00081 30.7 0.7 15 133-147 3-17 (197)
408 1e4v_A Adenylate kinase; trans 22.4 21 0.00071 32.0 0.4 15 133-147 3-17 (214)
409 3u4q_A ATP-dependent helicase/ 22.4 21 0.00071 41.5 0.5 18 130-147 23-40 (1232)
410 1nrj_B SR-beta, signal recogni 22.3 25 0.00087 31.1 1.0 20 128-147 10-29 (218)
411 1ksh_A ARF-like protein 2; sma 22.3 26 0.00089 30.0 1.0 20 128-147 16-35 (186)
412 2f9l_A RAB11B, member RAS onco 22.3 25 0.00086 30.7 0.9 18 130-147 5-22 (199)
413 2nq2_C Hypothetical ABC transp 22.3 22 0.00077 33.2 0.6 15 133-147 34-48 (253)
414 1z47_A CYSA, putative ABC-tran 22.2 23 0.00078 35.2 0.7 14 134-147 45-58 (355)
415 3rlf_A Maltose/maltodextrin im 22.1 23 0.00078 35.6 0.6 14 134-147 33-46 (381)
416 2zu0_C Probable ATP-dependent 22.1 23 0.00079 33.4 0.6 15 133-147 49-63 (267)
417 2qt1_A Nicotinamide riboside k 22.1 19 0.00066 31.9 0.1 25 121-147 14-38 (207)
418 1m7g_A Adenylylsulfate kinase; 22.1 23 0.0008 31.6 0.7 17 131-147 26-42 (211)
419 2jeo_A Uridine-cytidine kinase 22.1 23 0.0008 32.5 0.7 15 133-147 28-42 (245)
420 2ihy_A ABC transporter, ATP-bi 22.1 23 0.00079 33.7 0.6 14 134-147 51-64 (279)
421 2d2e_A SUFC protein; ABC-ATPas 22.0 23 0.0008 32.9 0.7 15 133-147 32-46 (250)
422 1ltq_A Polynucleotide kinase; 22.0 25 0.00087 33.1 0.9 16 132-147 4-19 (301)
423 2ixe_A Antigen peptide transpo 21.9 24 0.00081 33.4 0.7 15 133-147 48-62 (271)
424 3p32_A Probable GTPase RV1496/ 21.9 43 0.0015 32.8 2.6 30 118-147 65-96 (355)
425 2qi9_C Vitamin B12 import ATP- 21.9 24 0.00081 33.0 0.6 15 133-147 29-43 (249)
426 3auy_A DNA double-strand break 21.9 25 0.00084 34.8 0.8 16 132-147 27-42 (371)
427 2yv5_A YJEQ protein; hydrolase 21.9 31 0.0011 33.1 1.5 16 132-147 167-182 (302)
428 3tlx_A Adenylate kinase 2; str 21.8 24 0.00083 32.5 0.7 18 130-147 29-46 (243)
429 1g29_1 MALK, maltose transport 21.8 24 0.00081 35.3 0.7 14 134-147 33-46 (372)
430 3be4_A Adenylate kinase; malar 21.7 22 0.00074 32.0 0.3 16 132-147 7-22 (217)
431 2it1_A 362AA long hypothetical 21.7 24 0.00081 35.2 0.6 15 133-147 32-46 (362)
432 3fvq_A Fe(3+) IONS import ATP- 21.7 21 0.00073 35.5 0.3 15 133-147 33-47 (359)
433 2xb4_A Adenylate kinase; ATP-b 21.7 25 0.00086 31.8 0.8 15 133-147 3-17 (223)
434 1kd8_A GABH AIV, GCN4 acid bas 21.7 1.6E+02 0.0055 18.8 4.2 25 412-440 5-29 (36)
435 2pjz_A Hypothetical protein ST 21.6 24 0.00082 33.3 0.6 16 132-147 32-47 (263)
436 1ky3_A GTP-binding protein YPT 21.4 23 0.00079 29.9 0.5 18 130-147 8-25 (182)
437 3qkt_A DNA double-strand break 21.4 27 0.00092 34.0 1.0 14 134-147 27-40 (339)
438 3d3q_A TRNA delta(2)-isopenten 21.3 27 0.00091 34.5 0.9 16 132-147 9-24 (340)
439 3tqc_A Pantothenate kinase; bi 21.3 39 0.0013 33.0 2.1 16 132-147 94-109 (321)
440 1u8z_A RAS-related protein RAL 21.2 24 0.00081 29.2 0.5 16 132-147 6-21 (168)
441 2o5v_A DNA replication and rep 21.2 26 0.0009 34.7 0.9 16 132-147 28-43 (359)
442 1e69_A Chromosome segregation 21.0 32 0.0011 33.2 1.4 15 133-147 27-41 (322)
443 1z0j_A RAB-22, RAS-related pro 21.0 24 0.00082 29.4 0.5 17 131-147 7-23 (170)
444 1ek0_A Protein (GTP-binding pr 21.0 24 0.00083 29.3 0.5 16 132-147 5-20 (170)
445 1vht_A Dephospho-COA kinase; s 20.9 27 0.00091 31.2 0.8 17 131-147 5-21 (218)
446 1f6b_A SAR1; gtpases, N-termin 20.9 30 0.001 30.3 1.1 27 121-147 15-42 (198)
447 3lda_A DNA repair protein RAD5 20.9 30 0.001 34.8 1.2 30 118-147 163-195 (400)
448 1deq_A Fibrinogen (alpha chain 20.8 4E+02 0.014 26.4 9.1 65 415-479 91-157 (390)
449 1zj6_A ADP-ribosylation factor 20.8 36 0.0012 29.2 1.6 23 125-147 11-33 (187)
450 1v43_A Sugar-binding transport 20.8 25 0.00087 35.1 0.6 15 133-147 40-54 (372)
451 2erx_A GTP-binding protein DI- 20.8 24 0.00083 29.4 0.5 17 131-147 4-20 (172)
452 2lkc_A Translation initiation 20.6 25 0.00086 29.6 0.5 17 131-147 9-25 (178)
453 3cf2_A TER ATPase, transitiona 20.5 22 0.00077 39.3 0.2 60 131-196 512-584 (806)
454 2w00_A HSDR, R.ECOR124I; ATP-b 20.4 36 0.0012 38.8 1.8 15 133-147 303-317 (1038)
455 1tf7_A KAIC; homohexamer, hexa 20.3 31 0.0011 35.9 1.2 28 120-147 26-56 (525)
456 1wms_A RAB-9, RAB9, RAS-relate 20.1 26 0.00088 29.6 0.5 17 131-147 8-24 (177)
457 2wwf_A Thymidilate kinase, put 20.1 25 0.00085 31.0 0.4 16 132-147 12-27 (212)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=8.9e-94 Score=731.13 Aligned_cols=345 Identities=39% Similarity=0.608 Sum_probs=286.4
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEeccc--ceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHh
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTE--LKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESV 125 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 125 (480)
+..++|+|+||+||+++.|...+. ..++.+... ...+.. ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~i~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 80 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGS--KFVVKFPNNVEENCISI-----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDV 80 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTC--CBCEECCSSSTTCEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCC--ceEEEeCCCCCCcEEEE-----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHH
Confidence 345799999999999999875543 234544432 233332 24689999999999999999999999999999
Q ss_pred ccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCCCc
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPANDN 201 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~~~ 201 (480)
|+|||+||||||||||||||||.|.. +++..+|||||++++||..+... .+.|++||+|||||+|+|||++.+..
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm~G~~-~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 159 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTMEGVI-GDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVN 159 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBST-TCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCS
T ss_pred hCCCceEEEeecCCCCCCceEEecCC-CCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCC
Confidence 99999999999999999999998743 34567899999999999988542 35899999999999999999998889
Q ss_pred ceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccc
Q 043730 202 ISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281 (480)
Q Consensus 202 l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 281 (480)
+.+++++..| ++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 160 l~i~e~~~~~-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~------------ 226 (365)
T 2y65_A 160 LSVHEDKNRV-PYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN------------ 226 (365)
T ss_dssp BCEEECSSSC-EEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT------------
T ss_pred ceEEECCCCC-EEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC------------
Confidence 9999998654 999999999999999999999999999999999999999999999999998865432
Q ss_pred cccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCCCCCCCcccccccccCC
Q 043730 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 282 ~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~iPyRdSkLT~LL~dsLg 360 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..||||||||||+||||+||
T Consensus 227 -------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLg 299 (365)
T 2y65_A 227 -------QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLG 299 (365)
T ss_dssp -------CCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTT
T ss_pred -------CCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcC
Confidence 2346799999999999999999999999999999999999999999999987 57999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHH
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRRLEIQLDKL 420 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~l~~~~~~l 420 (480)
|||+|+||+||||+..+++||++||+||+||++|+|.|.+|++.+.+.+.++|+++++++
T Consensus 300 Gnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 300 GNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred CCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877777665554
No 2
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.3e-93 Score=726.52 Aligned_cols=341 Identities=36% Similarity=0.531 Sum_probs=252.0
Q ss_pred CCCCCCCCCEEEEEEcCCCCccccccCCCCCceEEe-cccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 44 AGNDGVPGRVRVAVRLRPRNAEETVADADFADCVEL-QTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 44 ~~~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
....+..++|+|+|||||++..|...+. ..|+.. +.....+....+......|.||+||+++++|++||+.++.|+|
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv 91 (388)
T 3bfn_A 14 LYFQGPPARVRVAVRLRPFVDGTAGASD--PPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPIL 91 (388)
T ss_dssp CCSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGH
T ss_pred ccccCCCCCEEEEEECCCCChhhhccCC--CceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHH
Confidence 4445567899999999999998864432 235442 2221112212222345689999999999999999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC-------CCccEEEEEEeEeechhcccC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL-------ESDSVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~-------~~~~V~vS~~EIynE~v~DLL 195 (480)
+++|+|||+||||||||||||||||+|. ..++|||||++.+||..+.. ..+.|++||+|||||+|+|||
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~G~----~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 167 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTMLGS----PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL 167 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESS
T ss_pred HHhhcCceeeEeeecCCCCCCCeEeecC----ccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehh
Confidence 9999999999999999999999999764 34679999999999998753 134799999999999999999
Q ss_pred CCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 196 DPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 196 ~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
++....+.+++++.. .++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+......
T Consensus 168 ~~~~~~l~ired~~~-~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~----- 241 (388)
T 3bfn_A 168 DPASGDLVIREDCRG-NILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP----- 241 (388)
T ss_dssp SCSSCBCCCEECTTS-CEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-----
T ss_pred ccCCCCceEEEcCCC-CEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-----
Confidence 998889999999864 59999999999999999999999999999999999999999999999999987643211
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLL 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL 355 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||
T Consensus 242 -------------~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlL 308 (388)
T 3bfn_A 242 -------------FRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLL 308 (388)
T ss_dssp -------------CCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHT
T ss_pred -------------CceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHH
Confidence 2246799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHH
Q 043730 356 RDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSL 409 (480)
Q Consensus 356 ~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~ 409 (480)
||+|||||+|+||+||||+..+++||++||+||+||++|+|.|.+|++.+...+
T Consensus 309 qdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 309 QDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp TTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC--------------
T ss_pred HHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 999999999999999999999999999999999999999999999998877654
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3e-92 Score=718.00 Aligned_cols=336 Identities=40% Similarity=0.653 Sum_probs=301.3
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCC
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGY 129 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 129 (480)
.++|+|+||+||++..|...+. ..++.+...... .+. .....+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~-~~~-~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGG--QPIVTFQGPDTC-TVD-SKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTC--CBCEEECSTTEE-EEC-STTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCChHHhhcCC--ceEEEEcCCCeE-EEc-cCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4799999999999998875543 346666554432 222 223467899999999999999999999999999999999
Q ss_pred ceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCCCcceee
Q 043730 130 NGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPANDNISIV 205 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~~~l~i~ 205 (480)
|+||||||||||||||||+|...+....+|||||++++||..+... .+.|++||+|||||+|+|||++....+.++
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 160 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH 160 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEE
T ss_pred cceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeE
Confidence 9999999999999999998865555677899999999999987543 358999999999999999999988899999
Q ss_pred ecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccccC
Q 043730 206 EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLIK 285 (480)
Q Consensus 206 e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 285 (480)
+++..| ++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 161 e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---------------- 223 (355)
T 1goj_A 161 EEKNRG-VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---------------- 223 (355)
T ss_dssp EETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----------------
T ss_pred EcCCCC-EeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC----------------
Confidence 998654 999999999999999999999999999999999999999999999999998865432
Q ss_pred CCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCCCCCCCcccccccccCCCCce
Q 043730 286 PSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHVPLRDSKLTRLLRDSFGGTAR 364 (480)
Q Consensus 286 ~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~iPyRdSkLT~LL~dsLgGns~ 364 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++
T Consensus 224 ---~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~ 300 (355)
T 1goj_A 224 ---GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSR 300 (355)
T ss_dssp ---TEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCE
T ss_pred ---CceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCc
Confidence 2346799999999999999999999999999999999999999999999986 579999999999999999999999
Q ss_pred eeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHH
Q 043730 365 TSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSL 409 (480)
Q Consensus 365 t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~ 409 (480)
|+||+||||+..+++||++||+||+||++|+|.|.+|++.+...+
T Consensus 301 t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l 345 (355)
T 1goj_A 301 TTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345 (355)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSS
T ss_pred EEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHHH
Confidence 999999999999999999999999999999999999998765543
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=8.1e-93 Score=724.41 Aligned_cols=345 Identities=39% Similarity=0.632 Sum_probs=284.3
Q ss_pred CCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCC----CCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 47 DGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNN----WDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 47 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
.+..++|+|+||+||++..|...+. ..++.++.....+.+..+. ...+.|.||+||+++++|++||+.+++|+|
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv 94 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASY--DKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLV 94 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTC--CBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCC--ceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHH
Confidence 3456899999999999999875543 4566666655555554332 345789999999999999999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPAN 199 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~ 199 (480)
+++|+|||+||||||||||||||||+|.. +++..+|||||++++||..+... .+.|++||+|||||+|+|||++..
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~-~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 173 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIR-GDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ 173 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCT-TSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEecCC-CCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCC
Confidence 99999999999999999999999998743 34567899999999999988653 357999999999999999998764
Q ss_pred -CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccc
Q 043730 200 -DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEIN 278 (480)
Q Consensus 200 -~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~ 278 (480)
..+.+++++..| ++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|++.....+
T Consensus 174 ~~~l~i~e~~~~~-v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-------- 244 (372)
T 3b6u_A 174 TKRLELKERPDTG-VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD-------- 244 (372)
T ss_dssp TCCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC------------
T ss_pred CCCceEEECCCCc-EecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCC--------
Confidence 578999998654 9999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC-CCCCCCCCcccccccc
Q 043730 279 HASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS-AHVPLRDSKLTRLLRD 357 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~-~~iPyRdSkLT~LL~d 357 (480)
.......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||||
T Consensus 245 --------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqd 316 (372)
T 3b6u_A 245 --------GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQD 316 (372)
T ss_dssp ---------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTT
T ss_pred --------CCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 1134578999999999999999999999999999999999999999999999864 6999999999999999
Q ss_pred cCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCHHHHHHH
Q 043730 358 SFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLSRR 412 (480)
Q Consensus 358 sLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~~~~~~~ 412 (480)
+|||||+|+||+||||+..+++||++||+||+||++|+|.|.+|++... .++++
T Consensus 317 sLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~ 370 (372)
T 3b6u_A 317 SLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLRE 370 (372)
T ss_dssp TTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----------
T ss_pred hcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH-HHHHh
Confidence 9999999999999999999999999999999999999999999987543 34443
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=8.1e-92 Score=712.99 Aligned_cols=332 Identities=36% Similarity=0.583 Sum_probs=268.8
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC---------CCCCCceeecccCCCCCChHHHHhhhhhh
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN---------NWDSDTYEFDEVFTESASQKRVYEVVAKP 120 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~p 120 (480)
.++|+|+||+||++..|...+. ..|+.+++....+.+..+ ....+.|.||+||+++++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 80 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENA--LNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKP 80 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTC--CBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHH
T ss_pred CCCeEEEEEeCCCChhhhccCC--ceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHH
Confidence 4699999999999999875543 456776655444444332 23467899999999999999999999999
Q ss_pred hHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCC
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~ 196 (480)
+|+++|+|||+||||||||||||||||+|.. .++|||||++++||+.+... .+.|++||+|||||+|+|||+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 156 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK 156 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEeecCC----ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc
Confidence 9999999999999999999999999997643 56899999999999988632 347999999999999999998
Q ss_pred CCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccc
Q 043730 197 PANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSE 276 (480)
Q Consensus 197 ~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 276 (480)
+ ...+.+++++.. .++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++......
T Consensus 157 ~-~~~l~i~e~~~~-~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~------ 228 (350)
T 2vvg_A 157 N-NTKLPLKEDKTR-GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIEN------ 228 (350)
T ss_dssp T-EEEECEEEETTT-EEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC---------
T ss_pred C-CcCceeeEcCCC-CEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCC------
Confidence 4 457889999865 49999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccccc
Q 043730 277 INHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLR 356 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~ 356 (480)
......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+|||
T Consensus 229 -----------~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLq 297 (350)
T 2vvg_A 229 -----------KEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297 (350)
T ss_dssp ------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTT
T ss_pred -----------CccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHH
Confidence 124578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCH
Q 043730 357 DSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDY 406 (480)
Q Consensus 357 dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~ 406 (480)
|+|||||+|+||+||||+..+++||++||+||+||++|+|.|.+|++++.
T Consensus 298 dsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp TTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred HhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 99999999999999999999999999999999999999999999987653
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.2e-91 Score=715.72 Aligned_cols=329 Identities=35% Similarity=0.538 Sum_probs=290.6
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhcc
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLD 127 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 127 (480)
+.+++|+|+||+||++..|...+.. .++.. .....+.........+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~ 77 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKER--NAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVD 77 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCC--BCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChhhccCCCc--EEEEc-CCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhc
Confidence 5679999999999999988754432 12222 122233333333345789999999999999999999 6999999999
Q ss_pred CCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCC---C
Q 043730 128 GYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPAN---D 200 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~---~ 200 (480)
|||+||||||||||||||||+|.. .++|||||++.+||..+... .+.|++||+|||||+|+|||++.. .
T Consensus 78 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIYGAD----SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred CCceEEEEECCCCCCCeEeecCCC----CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 999999999999999999997643 46899999999999988653 357999999999999999998753 4
Q ss_pred cceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccc
Q 043730 201 NISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHA 280 (480)
Q Consensus 201 ~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~ 280 (480)
.+.+++++. |.++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 154 ~l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----------- 221 (369)
T 3cob_A 154 KLDIKKDSK-GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----------- 221 (369)
T ss_dssp CCEEEECTT-SCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT-----------
T ss_pred ceEEEECCC-CCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC-----------
Confidence 688999976 55999999999999999999999999999999999999999999999999998765432
Q ss_pred ccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCC
Q 043730 281 SHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFG 360 (480)
Q Consensus 281 ~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLg 360 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+||
T Consensus 222 --------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLg 293 (369)
T 3cob_A 222 --------QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLG 293 (369)
T ss_dssp --------CCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTT
T ss_pred --------CcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcC
Confidence 235689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccC
Q 043730 361 GTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEF 404 (480)
Q Consensus 361 Gns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~ 404 (480)
|||+|+|||||||+..+++||++||+||+||++|+|.|.+|...
T Consensus 294 Gnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 294 GNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred CCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 99999999999999999999999999999999999999999876
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.8e-92 Score=719.83 Aligned_cols=336 Identities=38% Similarity=0.577 Sum_probs=275.7
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecC----CCCCCCceeecccCCCCCChHHHHhhhhhhhHHH
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRK----NNWDSDTYEFDEVFTESASQKRVYEVVAKPVVES 124 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~ 124 (480)
..++|+|+||+||++..|...+. ..++.+++....+.+.. .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASA--HSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTC--CCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcCC--ceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 45799999999999998875543 34566655444443322 1123578999999999999999999999999999
Q ss_pred hccCCceeEEecCCCCCCcccccccCCCCC-------CCCcchhHHHHHHHHhhcCCC--CccEEEEEEeEeechhcccC
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTLGRLGDED-------TSSRGIMVRSMEDILADVSLE--SDSVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~-------~~~~Gii~r~~~~lf~~~~~~--~~~V~vS~~EIynE~v~DLL 195 (480)
+|+|||+||||||||||||||||+|..... ...+|||||++++||+.+... .+.|+|||+|||||+|+|||
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETT
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999998754321 224799999999999998764 35799999999999999999
Q ss_pred CCCC---CcceeeecCC-CCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcc
Q 043730 196 DPAN---DNISIVEDPK-TGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREE 271 (480)
Q Consensus 196 ~~~~---~~l~i~e~~~-~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~ 271 (480)
++.. ..+.+++++. .+.++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+.....+
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~- 242 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID- 242 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTT-
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCC-
Confidence 8764 4688998874 3569999999999999999999999999999999999999999999999999987643221
Q ss_pred cccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcc
Q 043730 272 DLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKL 351 (480)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkL 351 (480)
+......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..|||||||||
T Consensus 243 ---------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkL 307 (359)
T 1x88_A 243 ---------------GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 307 (359)
T ss_dssp ---------------SCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHH
T ss_pred ---------------CCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchH
Confidence 11235689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 352 TRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 352 T~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
|+||||+||||++|+||+||||+..+++||++||+||+||++|+|.|.+|+
T Consensus 308 T~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp HHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred HHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999999999999999999986
No 8
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-91 Score=717.84 Aligned_cols=342 Identities=36% Similarity=0.579 Sum_probs=279.0
Q ss_pred CCCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEec-CCCCCCCceeecccCCCCCChHHHHhhhhhhhHHH
Q 043730 46 NDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLR-KNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVES 124 (480)
Q Consensus 46 ~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~ 124 (480)
..+..++|+|+||+||++..|...+. ..++.+......+... ......+.|.||+||+++++|++||+.++.|+|++
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~ 95 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRS--AEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEE 95 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTC--CBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCC--CceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHH
Confidence 34456899999999999999875443 3456555433322221 22334678999999999999999999999999999
Q ss_pred hccCCceeEEecCCCCCCcccccccCCCC-------CCCCcchhHHHHHHHHhhcCC--CCccEEEEEEeEeechhcccC
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTLGRLGDE-------DTSSRGIMVRSMEDILADVSL--ESDSVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm~g~~~~-------~~~~~Gii~r~~~~lf~~~~~--~~~~V~vS~~EIynE~v~DLL 195 (480)
+|+|||+||||||||||||||||+|.... ....+|||||++++||+.+.. ..+.|++||+|||||+|+|||
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESS
T ss_pred HhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECC
Confidence 99999999999999999999999885432 245789999999999998754 356899999999999999999
Q ss_pred CCCC-CcceeeecC-CCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccc
Q 043730 196 DPAN-DNISIVEDP-KTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDL 273 (480)
Q Consensus 196 ~~~~-~~l~i~e~~-~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~ 273 (480)
++.. ..+.+++++ ..|.++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+.....+
T Consensus 176 ~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~--- 252 (373)
T 2wbe_C 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE--- 252 (373)
T ss_dssp CTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTT---
T ss_pred CCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCC---
Confidence 8754 457788875 45779999999999999999999999999999999999999999999999999986532211
Q ss_pred cccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCc-cchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccc
Q 043730 274 SSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSE-GHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLT 352 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~-g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT 352 (480)
.......|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+++..||||||||||
T Consensus 253 -------------~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT 319 (373)
T 2wbe_C 253 -------------GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLT 319 (373)
T ss_dssp -------------TCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHH
T ss_pred -------------CCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHH
Confidence 123456899999999999999999987 999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCC
Q 043730 353 RLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFD 405 (480)
Q Consensus 353 ~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~ 405 (480)
|||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|.+|++.+
T Consensus 320 ~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 320 RLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp HHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred HHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 99999999999999999999999999999999999999999999999998754
No 9
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.5e-91 Score=729.03 Aligned_cols=335 Identities=33% Similarity=0.531 Sum_probs=271.2
Q ss_pred CCCCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC---------------CCCCCceeecccCCC---
Q 043730 45 GNDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN---------------NWDSDTYEFDEVFTE--- 106 (480)
Q Consensus 45 ~~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~f~FD~Vf~~--- 106 (480)
...+..++|+|+|||||+++.|...+. ..++.+++....+.+..+ ....+.|+||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~ 109 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNA--ECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNT 109 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTC--CCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCT
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCC--ceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCc
Confidence 345667899999999999999976543 235555554333222111 123578999999976
Q ss_pred ----CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-------
Q 043730 107 ----SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE------- 175 (480)
Q Consensus 107 ----~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~------- 175 (480)
.++|++||+.++.|+|+++|+|||+||||||||||||||||+|. ..++|||||++++||..+...
T Consensus 110 ~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~----~~~~GIipr~~~~lF~~i~~~~~~~~~~ 185 (443)
T 2owm_A 110 EDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT----PDQPGLIPRTCEDLFQRIASAQDETPNI 185 (443)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC----TTSCCHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred CCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecC----CCCCchHHHHHHHHHHHHHhhhcccCCc
Confidence 48999999999999999999999999999999999999999763 346799999999999987542
Q ss_pred CccEEEEEEeEeechhcccCCCC-----CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCC
Q 043730 176 SDSVSVSYLQLYMETIQDLLDPA-----NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTE 250 (480)
Q Consensus 176 ~~~V~vS~~EIynE~v~DLL~~~-----~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~ 250 (480)
.+.|+|||+|||||+|+|||++. ...+.+++++..| ++|.|++++.|.+++|++++|..|.++|++++|.||..
T Consensus 186 ~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g-~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~ 264 (443)
T 2owm_A 186 SYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEG-PYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDT 264 (443)
T ss_dssp EEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTE-EEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCB
T ss_pred eEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCC-EeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCc
Confidence 35799999999999999999873 2358999998754 99999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEEeeccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHH
Q 043730 251 SSRSHAILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSAL 330 (480)
Q Consensus 251 SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L 330 (480)
|||||+||+|+|.+...... ........|+|+|||||||||..++++.|.+++|+.+||+||++|
T Consensus 265 SSRSH~Ifti~v~~~~~~~~---------------~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aL 329 (443)
T 2owm_A 265 SSRSHAVFTIMLKQIHHDLE---------------TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329 (443)
T ss_dssp CTTEEEEEEEEEEEEC----------------------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHH
T ss_pred cCCCeEEEEEEEEEeecccC---------------CCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHH
Confidence 99999999999987643211 011235689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC----------------------CCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHH
Q 043730 331 GKCINALAENS----------------------AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFG 388 (480)
Q Consensus 331 ~~vI~aL~~~~----------------------~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa 388 (480)
|+||.+|+++. .|||||||||||||||+|||||+|+||+||||+ +++||++||+||
T Consensus 330 g~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA 407 (443)
T 2owm_A 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYA 407 (443)
T ss_dssp HHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHH
Confidence 99999998743 389999999999999999999999999999997 599999999999
Q ss_pred HHhcccccccccccc
Q 043730 389 QRAMKVENMLKIKEE 403 (480)
Q Consensus 389 ~ra~~I~n~~~~~~~ 403 (480)
+||++|+|++.+|+.
T Consensus 408 ~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 408 DQAKRIRTRAVVNQV 422 (443)
T ss_dssp HHHTTCEECCCCCCC
T ss_pred HHHhhccccceeccc
Confidence 999999999999983
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5e-91 Score=701.72 Aligned_cols=318 Identities=41% Similarity=0.612 Sum_probs=285.6
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhcc
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLD 127 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 127 (480)
...++|+|+||+||+++.|...+.. .++.+.... .+.+ ..+.|.||+||+++++|++||+.+++|+|+++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~--~~~~~~~~~-~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~ 75 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDK--YIAKFQGED-TVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE 75 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCC--BCCEEETTT-EEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCCCEEEEEEcCCCChhHhccCCe--eEEEECCCC-eEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhC
Confidence 3458999999999999999765542 344444332 2222 2468999999999999999999999999999999
Q ss_pred CCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC----CCccEEEEEEeEeechhcccCCCCCCcce
Q 043730 128 GYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL----ESDSVSVSYLQLYMETIQDLLDPANDNIS 203 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~----~~~~V~vS~~EIynE~v~DLL~~~~~~l~ 203 (480)
|||+||||||||||||||||+|.. .++..+|||||++++||+.+.. ..+.|++||+|||||+|+|||++.+..+.
T Consensus 76 G~n~tifAYGqTGSGKTyTm~G~~-~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~ 154 (325)
T 1bg2_A 76 GYNGTIFAYGQTSSGKTHTMEGKL-HDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLS 154 (325)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBST-TCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBC
T ss_pred CCeEEEEEECCCCCCCceEecccC-CCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCce
Confidence 999999999999999999998743 3445789999999999998753 24589999999999999999999888999
Q ss_pred eeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccccc
Q 043730 204 IVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHL 283 (480)
Q Consensus 204 i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (480)
+++++..| ++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 155 i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-------------- 219 (325)
T 1bg2_A 155 VHEDKNRV-PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-------------- 219 (325)
T ss_dssp EEECTTSC-EEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--------------
T ss_pred EEECCCCC-EEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--------------
Confidence 99998654 899999999999999999999999999999999999999999999999998865432
Q ss_pred cCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCc
Q 043730 284 IKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSFGGTA 363 (480)
Q Consensus 284 ~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsLgGns 363 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||
T Consensus 220 -----~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns 294 (325)
T 1bg2_A 220 -----EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294 (325)
T ss_dssp -----CCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSC
T ss_pred -----CcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCC
Confidence 234679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 364 RTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 364 ~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
+|+||+||||+..+++||++||+||+|||+|
T Consensus 295 ~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred cEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 11
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.4e-90 Score=707.35 Aligned_cols=332 Identities=34% Similarity=0.558 Sum_probs=273.6
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC-CCCCCceeecccCCCC--------CChHHHHhhhhhhh
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN-NWDSDTYEFDEVFTES--------ASQKRVYEVVAKPV 121 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~--------~~Q~~vf~~~~~pl 121 (480)
++|+|+|||||++..|...+. ..++.++.....+..+.. ....+.|.||+||++. ++|++||+.+++|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl 81 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDS--KCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM 81 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTC--CBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred CCcEEEEECCCCChhhccCCC--CeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence 589999999999999875543 334555544333322221 2346789999999887 89999999999999
Q ss_pred HHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEeechhcccCC
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIynE~v~DLL~ 196 (480)
|+++|+|||+||||||||||||||||+|.. ....+|||||++++||..+... .+.|+|||+|||||+|+|||+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~ 159 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 159 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCS--GGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeCCC--ccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccc
Confidence 999999999999999999999999997743 3456899999999999988643 357999999999999999999
Q ss_pred CCC-CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 197 PAN-DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 197 ~~~-~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
+.. ..+.+++++..| ++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+.......+
T Consensus 160 ~~~~~~l~ire~~~~g-~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~--- 235 (366)
T 2zfi_A 160 PKNKGNLRVREHPLLG-PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN--- 235 (366)
T ss_dssp TTTCSCBCEEEETTTE-EEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT---
T ss_pred cccCCCceEEEcCCCC-EEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC---
Confidence 864 478999998755 999999999999999999999999999999999999999999999999998865433211
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC------------CCC
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN------------SAH 343 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~------------~~~ 343 (480)
......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..|
T Consensus 236 ------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~h 303 (366)
T 2zfi_A 236 ------------ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDF 303 (366)
T ss_dssp ------------CEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred ------------ccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCc
Confidence 12346799999999999999999999999999999999999999999999873 469
Q ss_pred CCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 344 VPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 344 iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
|||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|.|.++.
T Consensus 304 vPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 304 IPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred ccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998765
No 12
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.8e-90 Score=701.08 Aligned_cols=331 Identities=35% Similarity=0.501 Sum_probs=280.0
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccCC
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGY 129 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 129 (480)
.++|+|+||+||++..|...+.. .++.+......+... ...+.|.||+||+++++|++||+.++.|+|+++|+||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~--~~v~~~~~~~~i~~~---~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~ 77 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGET--AQVYWKTDNNVIYQV---DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGY 77 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTC--CCCCEEEETTEEEET---TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCChhhhccCCC--cEEEEeCCCCeEEEC---CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 47999999999999988754432 233333322223222 1357899999999999999999999999999999999
Q ss_pred ceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCC--Cccee
Q 043730 130 NGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPAN--DNISI 204 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~--~~l~i 204 (480)
|+||||||||||||||||+|.. ..+|||||++++||..+... .+.|+|||+|||||+|+|||++.. ..+.+
T Consensus 78 n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 78 NGTIFAYGQTASGKTYTMMGSE----DHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp CEEEEEEESTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred ccceeeecCCCCCCCeEEecCC----CCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 9999999999999999997643 46899999999999998754 357999999999999999998754 56889
Q ss_pred eecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCccccccccccccccc
Q 043730 205 VEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHASHLI 284 (480)
Q Consensus 205 ~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (480)
++++. |.++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++........
T Consensus 154 ~ed~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~------------ 220 (349)
T 1t5c_A 154 REDVN-RNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN------------ 220 (349)
T ss_dssp EETTT-TEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC----------------
T ss_pred EECCC-CCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcC------------
Confidence 99976 45999999999999999999999999999999999999999999999999998865432110
Q ss_pred CCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC--CCCCCCCCcccccccccCCCC
Q 043730 285 KPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS--AHVPLRDSKLTRLLRDSFGGT 362 (480)
Q Consensus 285 ~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~--~~iPyRdSkLT~LL~dsLgGn 362 (480)
.......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||
T Consensus 221 --~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGn 298 (349)
T 1t5c_A 221 --CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGN 298 (349)
T ss_dssp -----CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSS
T ss_pred --cCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCC
Confidence 1124578999999999999999999999999999999999999999999999865 699999999999999999999
Q ss_pred ceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccccCCH
Q 043730 363 ARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDY 406 (480)
Q Consensus 363 s~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~~~~~ 406 (480)
++|+|||||||+ +++||++||+||+||++|+|.|.+|++.+.
T Consensus 299 skt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 299 AKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp SEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred ceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 999999999997 599999999999999999999999987654
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-89 Score=691.95 Aligned_cols=321 Identities=36% Similarity=0.593 Sum_probs=268.2
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecccc-eEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhc
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTEL-KRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 126 (480)
|.+++|+|+||+||++..|..... ...++.+++.. ..+.... ....+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l 77 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPE-ATNAVTFDADDDSIIHLLH-KGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCI 77 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGG-GSBCEEECSSCTTEEEEEE-TTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCC-CccEEEEeCCCCcEEEEcC-CCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHh
Confidence 357899999999999988863321 12355554432 2222222 22457899999999999999999985 89999999
Q ss_pred cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEEEEeEeechhcccCCCCC-Cc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVSYLQLYMETIQDLLDPAN-DN 201 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS~~EIynE~v~DLL~~~~-~~ 201 (480)
+|||+||||||||||||||||+|. ..++|||||++++||..+... .+.|++||+|||||+|+|||++.. ..
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 153 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTMEGT----AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEK 153 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTBC----SSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCC
T ss_pred CCCEEEEEeECCCCCCCcEEEecC----CCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccccc
Confidence 999999999999999999999764 346899999999999988653 357999999999999999998653 33
Q ss_pred ceee--ecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccc
Q 043730 202 ISIV--EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINH 279 (480)
Q Consensus 202 l~i~--e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~ 279 (480)
+.++ +++. |.++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 154 l~i~~~~~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---------- 222 (330)
T 2h58_A 154 LEIRLCPDGS-GQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST---------- 222 (330)
T ss_dssp CCCEECTTSS-CCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT----------
T ss_pred ceEEEeecCC-CCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC----------
Confidence 4444 4544 56999999999999999999999999999999999999999999999999998764322
Q ss_pred cccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccccC
Q 043730 280 ASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRDSF 359 (480)
Q Consensus 280 ~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~dsL 359 (480)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+|
T Consensus 223 ---------~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsL 293 (330)
T 2h58_A 223 ---------GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSL 293 (330)
T ss_dssp ---------TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHH
T ss_pred ---------CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHh
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccc
Q 043730 360 GGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395 (480)
Q Consensus 360 gGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~ 395 (480)
||||+|+||+||||+..+++||++||+||+||++|+
T Consensus 294 gGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 294 SGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred CCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999986
No 14
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.9e-89 Score=697.98 Aligned_cols=325 Identities=37% Similarity=0.552 Sum_probs=250.0
Q ss_pred CCCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceE--------EEec-----------CCCCCCCceeecccCCC
Q 043730 46 NDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKR--------LKLR-----------KNNWDSDTYEFDEVFTE 106 (480)
Q Consensus 46 ~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~--------~~~~-----------~~~~~~~~f~FD~Vf~~ 106 (480)
.++..++|+|+|||||++..|...+. ..++.+...... +... ........|.||+||++
T Consensus 5 ~~d~~~~i~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~ 82 (355)
T 3lre_A 5 EEDLCHHMKVVVRVRPENTKEKAAGF--HKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDE 82 (355)
T ss_dssp -------CEEEEEECCCCHHHHHTTC--CBSEEECSSSEEEEC------------------------CCEEEECSEEECT
T ss_pred hhhccCCCEEEEEeCcCChHHHhcCC--ceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECC
Confidence 34667899999999999999976554 334444322111 1100 01123457999999999
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC----CccEEEE
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE----SDSVSVS 182 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~V~vS 182 (480)
+++|++||+.++.|+|+++|+|||+||||||||||||||||+|.. .++|||||++.+||..+... .+.|+||
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS 158 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----DEPGVMYLTMLHLYKCMDEIKEEKICSTAVS 158 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----CCCCeeehhhhHHHHhhhhhccCceEEEEEE
Confidence 999999999999999999999999999999999999999997643 46799999999999987643 2479999
Q ss_pred EEeEeechhcccCCCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEE
Q 043730 183 YLQLYMETIQDLLDPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHV 262 (480)
Q Consensus 183 ~~EIynE~v~DLL~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 262 (480)
|+|||||+|+|||++. ..+.+++++..| ++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|
T Consensus 159 ~~EIYnE~i~DLL~~~-~~l~ire~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 236 (355)
T 3lre_A 159 YLEVYNEQIRDLLVNS-GPLAVREDTQKG-VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236 (355)
T ss_dssp EEEEETTEEEESSSCC-CCBEEEECTTSC-EEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEE
T ss_pred EEEEECCEEEECcCCC-CCceeEEcCCCC-EEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEE
Confidence 9999999999999864 579999998755 99999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC-
Q 043730 263 KRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS- 341 (480)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~- 341 (480)
.+...... .......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||+++.
T Consensus 237 ~~~~~~~~----------------~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 300 (355)
T 3lre_A 237 RQQDKTAS----------------INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR 300 (355)
T ss_dssp EEEETTSC----------------TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC----
T ss_pred EEecCCCC----------------CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 98754321 1123467999999999999999999999999999999999999999999998753
Q ss_pred --CCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 342 --AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 342 --~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
.|||||||||||||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 301 ~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 301 KNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp ----CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 59999999999999999999999999999999999999999999999999986
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.7e-89 Score=694.14 Aligned_cols=326 Identities=37% Similarity=0.593 Sum_probs=262.4
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHhccC
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESVLDG 128 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 128 (480)
..++|+|+||+||+++.|...+. ..|+.+.+....+.+. ..+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G 82 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGH--QSCLQVEPGLGRVTLG----RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEG 82 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTC--CBCEEEEGGGTEEEET----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred cccceEEEEEecccchHHHhccC--eeEEEEcCCCceEEec----ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhh
Confidence 35799999999999999875543 4578777766666553 35789999999999999999999999999999999
Q ss_pred CceeEEecCCCCCCcccccccCCCC--CCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCC--Cc
Q 043730 129 YNGTVMAYGQTGTGKTFTLGRLGDE--DTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPAN--DN 201 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm~g~~~~--~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~--~~ 201 (480)
||+||||||||||||||||+|.... ...++|||||++++||+.+... .+.|+|||+|||||+|+|||++.. ..
T Consensus 83 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 162 (344)
T 4a14_A 83 FNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD 162 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGG
T ss_pred cCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccc
Confidence 9999999999999999999774322 2457899999999999988654 357999999999999999998643 46
Q ss_pred ceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccccccc
Q 043730 202 ISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEINHAS 281 (480)
Q Consensus 202 l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 281 (480)
+.+++++. |.++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++........
T Consensus 163 l~i~e~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~--------- 232 (344)
T 4a14_A 163 IQLREDER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL--------- 232 (344)
T ss_dssp CEEEECTT-SCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---------------
T ss_pred ceeeeccC-CCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccC---------
Confidence 88999986 55999999999999999999999999999999999999999999999999998865322100
Q ss_pred cccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC---CCCCCCCCCccccccccc
Q 043730 282 HLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN---SAHVPLRDSKLTRLLRDS 358 (480)
Q Consensus 282 ~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~---~~~iPyRdSkLT~LL~ds 358 (480)
..+.......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+
T Consensus 233 --~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 233 --PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp --------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTS
T ss_pred --CCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhh
Confidence 011223457899999999999999999999999999999999999999999999874 469999999999999999
Q ss_pred CCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhc
Q 043730 359 FGGTARTSLIVTIGPSPRHRGETASTILFGQRAM 392 (480)
Q Consensus 359 LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~ 392 (480)
|||||+|+||+||||+..+++||++||+||+|||
T Consensus 311 LgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999999999999996
No 16
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.7e-89 Score=695.91 Aligned_cols=325 Identities=32% Similarity=0.496 Sum_probs=247.7
Q ss_pred CCCCCCEEEEEEcCCCCccccccCCCCCceEEec-------ccceEEEecC------------CCCCCCceeecccCCCC
Q 043730 47 DGVPGRVRVAVRLRPRNAEETVADADFADCVELQ-------TELKRLKLRK------------NNWDSDTYEFDEVFTES 107 (480)
Q Consensus 47 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~-------~~~~~~~~~~------------~~~~~~~f~FD~Vf~~~ 107 (480)
.+.+++|+|+|||||+++.|...+.. ++.+. .....+.+.. .....+.|.||+||+++
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~ 94 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPG---LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG 94 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGG---GSBCCC------CCCCEEECCC-----------------CEEECSEEECTT
T ss_pred hccCCCeEEEEEcCCCChhhcccCCc---eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc
Confidence 45678999999999999988654321 11110 1112222211 11234689999999999
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEE
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVS 182 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS 182 (480)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|....+...+|||||++++||..+... .+.|++|
T Consensus 95 ~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 173 (376)
T 2rep_A 95 SGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVAS 173 (376)
T ss_dssp CCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEE
T ss_pred ccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 9999999986 589999999999999999999999999998865555668899999999999987542 4589999
Q ss_pred EEeEeechhcccCCCC-----CCcceeeecC-CCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCcee
Q 043730 183 YLQLYMETIQDLLDPA-----NDNISIVEDP-KTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHA 256 (480)
Q Consensus 183 ~~EIynE~v~DLL~~~-----~~~l~i~e~~-~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~ 256 (480)
|+|||||+|+|||++. ...+.++++. ..+.++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+
T Consensus 174 ~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 253 (376)
T 2rep_A 174 YVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253 (376)
T ss_dssp EEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEE
T ss_pred EEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceE
Confidence 9999999999999875 2357788873 345699999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCcc----chHHHHHHHhhhHHHHHH
Q 043730 257 ILMIHVKRSVVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEG----HMLEEAKSINLSLSALGK 332 (480)
Q Consensus 257 i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g----~~~~E~~~IN~SL~~L~~ 332 (480)
||+|+|.+..... .....|+|+|||||||||..++++.| .|++|+.+||+||++||+
T Consensus 254 Ifti~v~~~~~~~-------------------~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~ 314 (376)
T 2rep_A 254 VFQLQISGEHSSR-------------------GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGL 314 (376)
T ss_dssp EEEEEEEEEESSS-------------------CCEEEEEEEEEECCCCC------------------------CHHHHHH
T ss_pred EEEEEEEEEecCC-------------------CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHH
Confidence 9999998765432 23467999999999999999999999 999999999999999999
Q ss_pred HHHHHhhCCCCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 333 CINALAENSAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 333 vI~aL~~~~~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
||.||+++..|||||||||||||||+|||||+|+||+||||+..+++||++||+||+|++++
T Consensus 315 vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 315 VIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.5e-88 Score=690.44 Aligned_cols=321 Identities=32% Similarity=0.484 Sum_probs=255.7
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEec---ccceEEEecC--CCCCCCceeecccCCCCCChHHHHhhhhhhhHH
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQ---TELKRLKLRK--NNWDSDTYEFDEVFTESASQKRVYEVVAKPVVE 123 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~---~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~ 123 (480)
.+|+|||+|||||+...|...+. ..++... .....+.+.. +....+.|.||+||+++++|++||+.+ .|+|+
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~ 79 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMS--HILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQ 79 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCT--TEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHH
T ss_pred CCCCcEEEEEeCCCCccccccCc--eEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHH
Confidence 57899999999999988865432 1122211 1122333322 222356899999999999999999985 69999
Q ss_pred HhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEeechhcccCCCC
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYMETIQDLLDPA 198 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIynE~v~DLL~~~ 198 (480)
++++|||+||||||||||||||||+|. .+|||||++++||..+... .+.|++||+|||||+|+|||++.
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm~g~------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTMLNA------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDF 153 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--
T ss_pred HHHCCcceeEEEeCCCCCCCceEeCCC------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccc
Confidence 999999999999999999999999763 3499999999999977542 35799999999999999999864
Q ss_pred C-----------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeec
Q 043730 199 N-----------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVV 267 (480)
Q Consensus 199 ~-----------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~ 267 (480)
. ..+.+++++..++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 154 ~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 233 (349)
T 3t0q_A 154 KSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233 (349)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEET
T ss_pred ccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEec
Confidence 3 45778888777779999999999999999999999999999999999999999999999999987654
Q ss_pred cCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC---CCC
Q 043730 268 GREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS---AHV 344 (480)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~---~~i 344 (480)
.. .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++. .||
T Consensus 234 ~~-------------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hi 294 (349)
T 3t0q_A 234 HT-------------------GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYI 294 (349)
T ss_dssp TT-------------------CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCC
T ss_pred CC-------------------CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcC
Confidence 32 23467999999999999999999999999999999999999999999998754 499
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccc
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENM 397 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~ 397 (480)
|||||||||||||+|||||+|+||+||||+..+++||++||+||+|+++|+..
T Consensus 295 PyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 295 PFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp CGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 99999999999999999999999999999999999999999999999999854
No 18
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.1e-88 Score=688.33 Aligned_cols=320 Identities=32% Similarity=0.502 Sum_probs=262.3
Q ss_pred CCCEEEEEEcCCCCc-cccccCCCCCceEEecc-----cceEEEec--CCCCCCCceeecccCCCCCChHHHHhhhhhhh
Q 043730 50 PGRVRVAVRLRPRNA-EETVADADFADCVELQT-----ELKRLKLR--KNNWDSDTYEFDEVFTESASQKRVYEVVAKPV 121 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~-~e~~~~~~~~~~v~~~~-----~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~pl 121 (480)
+|+|+|+|||||++. .|... ..++.+.. ....+.+. .+....+.|.||+||+++++|++||+.+ .|+
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~l 76 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSD----TSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQL 76 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCT----TEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHH
T ss_pred CCCeEEEEEeCCCCcccccCC----CceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHH
Confidence 589999999999987 34211 12333321 11223322 2333457899999999999999999985 699
Q ss_pred HHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC-----CCccEEEEEEeEeechhcccCC
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL-----ESDSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~-----~~~~V~vS~~EIynE~v~DLL~ 196 (480)
|+++|+|||+||||||||||||||||+|. .+|||||++++||..+.. ..+.|++||+|||||+|+|||+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~G~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 150 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR 150 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC
T ss_pred HHHhcCCceeEEEEECCCCCCCcEeccCC------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccC
Confidence 99999999999999999999999999763 359999999999998753 2458999999999999999998
Q ss_pred CCCC---------cceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeec
Q 043730 197 PAND---------NISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVV 267 (480)
Q Consensus 197 ~~~~---------~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~ 267 (480)
+... .+.+++++..+.++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 151 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (347)
T 1f9v_A 151 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 230 (347)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC
T ss_pred CccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC
Confidence 7643 4678888777779999999999999999999999999999999999999999999999999987643
Q ss_pred cCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCC---CCC
Q 043730 268 GREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENS---AHV 344 (480)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~---~~i 344 (480)
.. .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+++. .||
T Consensus 231 ~~-------------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hi 291 (347)
T 1f9v_A 231 KT-------------------GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHI 291 (347)
T ss_dssp ---------------------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCC
T ss_pred CC-------------------CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcC
Confidence 21 23467999999999999999999999999999999999999999999999875 899
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccc
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLK 399 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~ 399 (480)
||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+..++
T Consensus 292 PyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 292 PFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp CGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred ccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999987653
No 19
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-89 Score=694.89 Aligned_cols=328 Identities=37% Similarity=0.532 Sum_probs=251.5
Q ss_pred CCCCCCCEEEEEEcCCCCcccccc--CCCCCceEEecccc-eEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 46 NDGVPGRVRVAVRLRPRNAEETVA--DADFADCVELQTEL-KRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 46 ~~~~~~~v~V~vRvRP~~~~e~~~--~~~~~~~v~~~~~~-~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
..+.+++|+|+|||||++..|... ..+...++.+.... .......+......|.||+||+ +++|++||+.+++|+|
T Consensus 19 ~~~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv 97 (359)
T 3nwn_A 19 SMGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVV 97 (359)
T ss_dssp -----CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHH
T ss_pred CCCCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHH
Confidence 334568999999999998665321 01111222221110 0001112233456799999997 5899999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechhcccCCCCC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETIQDLLDPAN 199 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v~DLL~~~~ 199 (480)
+++|+|||+||||||||||||||||+|.. .+..++|||||++++||+.+... .+.|+|||+|||||+|+|||++..
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~-~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMMGAT-ENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCS-SCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeCCcc-CCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 99999999999999999999999998743 34457899999999999987654 357999999999999999998532
Q ss_pred ------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccc
Q 043730 200 ------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDL 273 (480)
Q Consensus 200 ------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~ 273 (480)
..+.+.+++ .| +++.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 177 ~~~~~~~~~~~~~~~-~g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~--- 251 (359)
T 3nwn_A 177 YVGPSVTPMTIVENP-QG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS--- 251 (359)
T ss_dssp TSCTTTSCCEEEEET-TE-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--------
T ss_pred ccccccccceEEecC-Cc-eEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccccc---
Confidence 345667765 35 8999999999999999999999999999999999999999999999999987543221
Q ss_pred cccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCCCCCCCccc
Q 043730 274 SSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHVPLRDSKLT 352 (480)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~iPyRdSkLT 352 (480)
......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..||||||||||
T Consensus 252 --------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT 317 (359)
T 3nwn_A 252 --------------EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLT 317 (359)
T ss_dssp ----------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHH
T ss_pred --------------CcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHH
Confidence 12346799999999999999999999999999999999999999999999974 569999999999
Q ss_pred ccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 353 RLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 353 ~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
|||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 318 ~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 318 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999987
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=4.7e-88 Score=691.15 Aligned_cols=320 Identities=33% Similarity=0.485 Sum_probs=252.0
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEE-EecCCC------CCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRL-KLRKNN------WDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~-~~~~~~------~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
.++|+|+||+||++..|...+. ..++.+......+ ..+... ...+.|.||+||+++++|++||+.+++|+|
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKE--IDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTC--CBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEECCCCChHHhccCC--ceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 5899999999999999875543 3455554332221 111111 124689999999999999999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCC--CCCCCCcchhHHHHHHHHhhcCC-----CCccEEEEEEeEeechhcccC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLG--DEDTSSRGIMVRSMEDILADVSL-----ESDSVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~--~~~~~~~Gii~r~~~~lf~~~~~-----~~~~V~vS~~EIynE~v~DLL 195 (480)
+++|+|||+||||||||||||||||+|.. ......+|||||++++||..+.. ..+.|++||+|||||+|+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 99999999999999999999999998742 22345789999999999998864 346899999999999999999
Q ss_pred CCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 196 DPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 196 ~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
++. ..+.+++++..| ++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 208 ~~~-~~l~i~ed~~~~-v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--------- 276 (387)
T 2heh_A 208 NKK-AKLRVLEDGKQQ-VQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG--------- 276 (387)
T ss_dssp TTT-EECEEEECTTCC-EEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS---------
T ss_pred CCC-ccceEEEcCCCC-EEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC---------
Confidence 874 568999998654 999999999999999999999999999999999999999999999999997431
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCC-CccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSG-SEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRL 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~L 354 (480)
...|+|+|||||||||..+++ ..+.+++|+.+||+||++||+||.+|+++..||||||||||+|
T Consensus 277 ---------------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrl 341 (387)
T 2heh_A 277 ---------------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 341 (387)
T ss_dssp ---------------SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHH
T ss_pred ---------------eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHH
Confidence 257999999999999998876 4567888999999999999999999999999999999999999
Q ss_pred cccc-CCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccc
Q 043730 355 LRDS-FGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENM 397 (480)
Q Consensus 355 L~ds-LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~ 397 (480)
|||+ |||||+|+|||||||+..+++||++||+||+|||+|++.
T Consensus 342 LqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 342 LRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp TGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999 699999999999999999999999999999999999864
No 21
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-87 Score=684.22 Aligned_cols=321 Identities=34% Similarity=0.559 Sum_probs=253.1
Q ss_pred CCEEEEEEcCCCCccccccCCCCCceEEecccceEEEec-------CCCCCCCceeecccC--------CCCCChHHHHh
Q 043730 51 GRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLR-------KNNWDSDTYEFDEVF--------TESASQKRVYE 115 (480)
Q Consensus 51 ~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~f~FD~Vf--------~~~~~Q~~vf~ 115 (480)
.+|+|+|||||++..|...+. ..++.++.....+... ......+.|.||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHT--KCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTC--CBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCC--ceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 379999999999999976543 2344554433222111 112346789999999 56689999999
Q ss_pred hhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEeech
Q 043730 116 VVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYMET 190 (480)
Q Consensus 116 ~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIynE~ 190 (480)
.++.|+|+++|+|||+||||||||||||||||+|.+ .++|||||++++||..+... .+.|+|||+|||||+
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~ 154 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEK 154 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTE
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC----CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCe
Confidence 999999999999999999999999999999997743 46799999999999877432 357999999999999
Q ss_pred hcccCCCCC--CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeecc
Q 043730 191 IQDLLDPAN--DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVG 268 (480)
Q Consensus 191 v~DLL~~~~--~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~ 268 (480)
|+|||++.. ..+.+++++..| ++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+....
T Consensus 155 i~DLL~~~~~~~~l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 233 (354)
T 3gbj_A 155 VRDLLDPKGSRQTLKVREHSVLG-PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYD 233 (354)
T ss_dssp EEETTC------CBCBC-------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEEC
T ss_pred eeEccCCCCCCcceEEEEcCCCC-EEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecc
Confidence 999998753 468899998765 89999999999999999999999999999999999999999999999999876443
Q ss_pred CcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhh------CCC
Q 043730 269 REEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAE------NSA 342 (480)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~------~~~ 342 (480)
... .......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..
T Consensus 234 ~~~---------------~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~ 298 (354)
T 3gbj_A 234 VKS---------------GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298 (354)
T ss_dssp TTS---------------CEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred cCC---------------CCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCC
Confidence 211 11234679999999999999999999999999999999999999999999986 357
Q ss_pred CCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcc
Q 043730 343 HVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMK 393 (480)
Q Consensus 343 ~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~ 393 (480)
||||||||||+||||+|||||+|+||+||||+..+++||++||+||.||+.
T Consensus 299 hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp CCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred cccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999985
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-87 Score=684.77 Aligned_cols=324 Identities=28% Similarity=0.434 Sum_probs=266.7
Q ss_pred CEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCC--------CCCCCceeecccCCCCCChHHHHhhhhhhhHH
Q 043730 52 RVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKN--------NWDSDTYEFDEVFTESASQKRVYEVVAKPVVE 123 (480)
Q Consensus 52 ~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~ 123 (480)
+|+|+||+||++..|...+. ..++.+.... .+.+..+ ......|.||+||+++++|++||+.+++|+|+
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~--~~~v~~~~~~-~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~ 77 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKD--SDIITVKNNC-TLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLII 77 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTC--CBCEEEEETT-EEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CeEEEEECCCCChHHhccCC--ceEEEECCCC-EEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhh
Confidence 59999999999999875543 3455554322 1211111 01246899999999999999999999999999
Q ss_pred Hhcc-CCceeEEecCCCCCCcccccccCCC-CCCCCcchhHHHHHHHHhhcCC----CCccEEEEEEeEeechhcccCCC
Q 043730 124 SVLD-GYNGTVMAYGQTGTGKTFTLGRLGD-EDTSSRGIMVRSMEDILADVSL----ESDSVSVSYLQLYMETIQDLLDP 197 (480)
Q Consensus 124 ~~l~-G~n~ti~aYGqtgSGKTyTm~g~~~-~~~~~~Gii~r~~~~lf~~~~~----~~~~V~vS~~EIynE~v~DLL~~ 197 (480)
++++ |||+||||||||||||||||+|... +....+|||||++.+||..+.. ..+.|++||+|||||+|+|||++
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 157 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK 157 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccC
Confidence 9996 9999999999999999999987532 2346789999999999998753 34579999999999999999987
Q ss_pred CCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccc
Q 043730 198 ANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEI 277 (480)
Q Consensus 198 ~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 277 (480)
.. .+.+++++.. .++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 158 ~~-~~~~~e~~~~-~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----------- 224 (360)
T 1ry6_A 158 RK-MVAALENGKK-EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----------- 224 (360)
T ss_dssp ------------C-CBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----------
T ss_pred Cc-cceeeEcCCC-CEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----------
Confidence 53 5667777664 4999999999999999999999999999999999999999999999999997532
Q ss_pred cccccccCCCCCceeeeeEEEEeCCCCcccccCCCcc-chHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccccc
Q 043730 278 NHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEG-HMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLR 356 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g-~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~ 356 (480)
.....|+|+|||||||||..++++.+ .+++|+.+||+||++||+||.+|+.+..||||||||||||||
T Consensus 225 -----------~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLq 293 (360)
T 1ry6_A 225 -----------KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLR 293 (360)
T ss_dssp -----------TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTG
T ss_pred -----------CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHH
Confidence 12357999999999999999998876 568999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 357 DSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 357 dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
|+|||||+|+||+||||+..+++||++||+||+|||+|+|.+..++
T Consensus 294 dsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 294 DIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp GGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred HHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 9999999999999999999999999999999999999999665443
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=4.2e-88 Score=687.69 Aligned_cols=322 Identities=37% Similarity=0.551 Sum_probs=254.6
Q ss_pred CCCCCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecC----------CCCCCCceeecccCCCCCChHHHH
Q 043730 45 GNDGVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRK----------NNWDSDTYEFDEVFTESASQKRVY 114 (480)
Q Consensus 45 ~~~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~f~FD~Vf~~~~~Q~~vf 114 (480)
.+.+.+|+|||+|||||+...+. .++.++++...+.+.. +......|.||+||+ +++|++||
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~-------~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy 88 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH-------EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVY 88 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT-------TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc-------ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHH
Confidence 34566799999999999865431 2444444444333221 122346799999995 89999999
Q ss_pred hhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC---CccEEEEEEeEeechh
Q 043730 115 EVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE---SDSVSVSYLQLYMETI 191 (480)
Q Consensus 115 ~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~V~vS~~EIynE~v 191 (480)
+.+++|+|+++|+|||+||||||||||||||||+|... ....+|||||++++||+.++.. .+.|++||+|||||+|
T Consensus 89 ~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~-~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i 167 (358)
T 2nr8_A 89 ETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESL 167 (358)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS-CGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCCceEeccccc-ccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCee
Confidence 99999999999999999999999999999999987432 3356899999999999988654 3589999999999999
Q ss_pred cccCCCC------CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEe
Q 043730 192 QDLLDPA------NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRS 265 (480)
Q Consensus 192 ~DLL~~~------~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 265 (480)
+|||++. ...+.+++++ .| ++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 168 ~DLL~~~~~~~~~~~~l~i~e~~-~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~ 245 (358)
T 2nr8_A 168 FDLLSTLPYVGPSVTPMTIVENP-QG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 245 (358)
T ss_dssp EETTSSSTTSCTTTSCCEEEEET-TE-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC
T ss_pred eECcCCccccCccCCceEEEECC-Cc-eEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEE
Confidence 9999863 3468899987 45 89999999999999999999999999999999999999999999999999875
Q ss_pred eccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCC
Q 043730 266 VVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHV 344 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~i 344 (480)
..... ......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||+++ ..||
T Consensus 246 ~~~~~-----------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hi 308 (358)
T 2nr8_A 246 SRTLS-----------------EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI 308 (358)
T ss_dssp ------------------------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----C
T ss_pred eccCC-----------------CCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 43211 12345799999999999999999999999999999999999999999999875 4699
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccc
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKV 394 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I 394 (480)
||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 309 PyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 309 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp CGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999986
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.5e-87 Score=691.40 Aligned_cols=321 Identities=32% Similarity=0.479 Sum_probs=255.1
Q ss_pred CCCEEEEEEcCCCCccccccCCCCCceEEecccceEE-EecCCC------CCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 50 PGRVRVAVRLRPRNAEETVADADFADCVELQTELKRL-KLRKNN------WDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 50 ~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~-~~~~~~------~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
.++|+|+||+||++..|...+. ..++.+......+ ..+... ...+.|.||+||+++++|++||+.++.|+|
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~--~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKE--IDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTC--CBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCC--ccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 5799999999999999875543 3455554332221 111111 123689999999999999999999999999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCC--CCCCCCcchhHHHHHHHHhhcCC-----CCccEEEEEEeEeechhcccC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLG--DEDTSSRGIMVRSMEDILADVSL-----ESDSVSVSYLQLYMETIQDLL 195 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~--~~~~~~~Gii~r~~~~lf~~~~~-----~~~~V~vS~~EIynE~v~DLL 195 (480)
+++|+|||+||||||||||||||||+|.. ......+|||||++.+||..+.. ..+.|++||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 99999999999999999999999998742 22345789999999999998864 246899999999999999999
Q ss_pred CCCCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 196 DPANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 196 ~~~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
++. ..+.+++++..| ++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..
T Consensus 228 ~~~-~~l~i~ed~~~~-v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~--------- 296 (410)
T 1v8k_A 228 NKK-AKLRVLEDSRQQ-VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--------- 296 (410)
T ss_dssp TTT-EEEEEEECSSCC-EEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS---------
T ss_pred CCC-CCceEEECCCCC-eEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC---------
Confidence 864 568899998654 999999999999999999999999999999999999999999999999996431
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCC-CccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSG-SEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRL 354 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~-~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~L 354 (480)
...|+|+|||||||||..+++ ..+.+++|+.+||+||++||+||.+|+.+..||||||||||+|
T Consensus 297 ---------------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrL 361 (410)
T 1v8k_A 297 ---------------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 361 (410)
T ss_dssp ---------------SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred ---------------cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHH
Confidence 247999999999999998876 4567888999999999999999999999999999999999999
Q ss_pred cccc-CCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccc
Q 043730 355 LRDS-FGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENML 398 (480)
Q Consensus 355 L~ds-LgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~ 398 (480)
|||+ |||||+|+|||||||+..+++||++||+||+||++|...|
T Consensus 362 LqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 362 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred HhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 9999 6999999999999999999999999999999999997654
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-87 Score=688.96 Aligned_cols=322 Identities=33% Similarity=0.510 Sum_probs=266.8
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEec---c--cceEEEe--cCCCCCCCceeecccCCCCCChHHHHhhhhhhh
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQ---T--ELKRLKL--RKNNWDSDTYEFDEVFTESASQKRVYEVVAKPV 121 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~---~--~~~~~~~--~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~pl 121 (480)
.+|+|+|+|||||+.+.+..... .++.+. . ....+.+ ..+....+.|.||+||+++++|++||+.+ .|+
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~l 132 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDT---SLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQL 132 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCC---TTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHH
T ss_pred cCCCeEEEEEeCCCCCcccccCC---CeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHH
Confidence 46899999999999876322211 122221 1 1112222 22333457899999999999999999985 589
Q ss_pred HHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC-----CCccEEEEEEeEeechhcccCC
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL-----ESDSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~-----~~~~V~vS~~EIynE~v~DLL~ 196 (480)
|+++|+|||+||||||||||||||||+|. .+|||||++.+||..+.. ..+.|++||+|||||+|+|||+
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~g~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 206 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLR 206 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeCCC------CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccC
Confidence 99999999999999999999999999763 349999999999998754 2458999999999999999998
Q ss_pred CCC---------CcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeec
Q 043730 197 PAN---------DNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVV 267 (480)
Q Consensus 197 ~~~---------~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~ 267 (480)
+.. ..+.+++++..|.++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 207 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 286 (403)
T 4etp_A 207 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNA 286 (403)
T ss_dssp C--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEET
T ss_pred CccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeec
Confidence 753 34678888877889999999999999999999999999999999999999999999999999987654
Q ss_pred cCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCC---CC
Q 043730 268 GREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSA---HV 344 (480)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~---~i 344 (480)
.. .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||+++.. ||
T Consensus 287 ~~-------------------~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hi 347 (403)
T 4etp_A 287 KT-------------------GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHI 347 (403)
T ss_dssp TT-------------------CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCC
T ss_pred CC-------------------CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcC
Confidence 32 234579999999999999999999999999999999999999999999987654 99
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccc
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLK 399 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~ 399 (480)
||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|+..++
T Consensus 348 PyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 348 PFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp CGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred CcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999999999999999999999999987654
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.8e-86 Score=669.94 Aligned_cols=309 Identities=32% Similarity=0.489 Sum_probs=242.5
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecc--cceEEEecCCCCCCCceeecccCCCCCChHHHHhhhhhhhHHHh
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQT--ELKRLKLRKNNWDSDTYEFDEVFTESASQKRVYEVVAKPVVESV 125 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 125 (480)
+..++|+|+|||||+...|... ...++.+.+ ....+.. ..+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~---~~~~v~~~~~~~~~~~~~-----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~ 90 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRR---EPSVVQFPPWSDGKSLIV-----DQNEFHFDHAFPATISQDEMYQALILPLVDKL 90 (344)
T ss_dssp CCCSEEEEEEEECCCC----------CCSEECCSSSCSSEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccC---CceEEEecCCCCCceEEe-----cCcEEEcceEECCCCCHHHHHHhhccchhhHh
Confidence 3457999999999998776322 133454433 2223332 34789999999999999999999999999999
Q ss_pred ccCCceeEEecCCCCCCcccccccCCCC--CCCCcchhHHHHHHHHhhcCCC------CccEEEEEEeEeechhcccCCC
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTLGRLGDE--DTSSRGIMVRSMEDILADVSLE------SDSVSVSYLQLYMETIQDLLDP 197 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm~g~~~~--~~~~~Gii~r~~~~lf~~~~~~------~~~V~vS~~EIynE~v~DLL~~ 197 (480)
|+|||+||||||||||||||||+|...+ ....+|||||++++||+.+... .+.|++||+|||||+|+|||++
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 170 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS 170 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSS
T ss_pred hCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCC
Confidence 9999999999999999999999764332 2467899999999999987532 3579999999999999999987
Q ss_pred CCCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccccc
Q 043730 198 ANDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSSEI 277 (480)
Q Consensus 198 ~~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 277 (480)
...... . + ..+.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.
T Consensus 171 ~~~~~~-~-----~-~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------------ 231 (344)
T 3dc4_A 171 TPHMPM-V-----A-ARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------------ 231 (344)
T ss_dssp CTTSBC-C-----S-STTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------------
T ss_pred CCCCcc-c-----c-ccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------------
Confidence 653221 1 1 34568999999999999999999999999999999999999999999999632
Q ss_pred cccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccccc
Q 043730 278 NHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLLRD 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL~d 357 (480)
...|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++.|||||||||||||||
T Consensus 232 -------------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqd 298 (344)
T 3dc4_A 232 -------------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQA 298 (344)
T ss_dssp -------------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTT
T ss_pred -------------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHH
Confidence 1469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccc
Q 043730 358 SFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVEN 396 (480)
Q Consensus 358 sLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n 396 (480)
+|||||+|+||+||||+..+++||++||+||+||++...
T Consensus 299 sLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 299 SLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp TSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999998754
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.6e-85 Score=676.86 Aligned_cols=317 Identities=29% Similarity=0.467 Sum_probs=257.6
Q ss_pred CCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEec--CC----CCCCCceeecccCCCCCChHHHHhhhhhhhH
Q 043730 49 VPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLR--KN----NWDSDTYEFDEVFTESASQKRVYEVVAKPVV 122 (480)
Q Consensus 49 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~--~~----~~~~~~f~FD~Vf~~~~~Q~~vf~~~~~plv 122 (480)
.+|+|+|+|||||+.+.|..... |+........+.+. .. ....+.|.||+||+++++|++||+. +.|+|
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv 131 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMC----CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLI 131 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCB----CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcc----eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHH
Confidence 46899999999999988854321 22211112222221 11 1235789999999999999999986 57999
Q ss_pred HHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC-----CCccEEEEEEeEeechhcccCCC
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL-----ESDSVSVSYLQLYMETIQDLLDP 197 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~-----~~~~V~vS~~EIynE~v~DLL~~ 197 (480)
+++|+|||+||||||||||||||||+|.. ..+|||||++.+||..+.. ..+.|++||+|||||+|+|||++
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 207 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTMDGVP----ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN 207 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHTEET----TEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCC
T ss_pred HHHHCCCceEEEEecCCCCCCeeEecCCC----CCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCC
Confidence 99999999999999999999999997643 4679999999999998753 24579999999999999999988
Q ss_pred CCCcceee--ecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 198 ANDNISIV--EDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 198 ~~~~l~i~--e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
....+.++ +++. +.++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 208 ~~~~~~i~~~~~~~-~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~------ 280 (412)
T 3u06_A 208 EQKDMEIRMAKNNK-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK------ 280 (412)
T ss_dssp SCCCCCEEECSSCT-TSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT------
T ss_pred CCCCceeeeeecCC-CCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC------
Confidence 77666555 4444 55999999999999999999999999999999999999999999999999998765432
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLL 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL 355 (480)
.....|+|+|||||||||.. .+.+++|+.+||+||++||+||.||++++.||||||||||+||
T Consensus 281 -------------~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LL 343 (412)
T 3u06_A 281 -------------QEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 343 (412)
T ss_dssp -------------TEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHH
T ss_pred -------------CCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHH
Confidence 23467999999999999974 3578999999999999999999999999999999999999999
Q ss_pred cccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccc
Q 043730 356 RDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENML 398 (480)
Q Consensus 356 ~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~ 398 (480)
||+|||||+|+||+||||+..+++||++||+||+|+++|+..+
T Consensus 344 qdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 344 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp GGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999998543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=5.8e-80 Score=684.94 Aligned_cols=319 Identities=33% Similarity=0.542 Sum_probs=248.9
Q ss_pred CCCCCEEEEEEcC----CCCccccccCCCCCceEEecc-------cceEEEe---cCCCCCCCceeecccCCCCCChHHH
Q 043730 48 GVPGRVRVAVRLR----PRNAEETVADADFADCVELQT-------ELKRLKL---RKNNWDSDTYEFDEVFTESASQKRV 113 (480)
Q Consensus 48 ~~~~~v~V~vRvR----P~~~~e~~~~~~~~~~v~~~~-------~~~~~~~---~~~~~~~~~f~FD~Vf~~~~~Q~~v 113 (480)
...++++|||||| |....|...+.. .+.+.. ....+.+ ..+....+.|.||+||+++++|++|
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v 447 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSED---IIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLV 447 (715)
T ss_dssp SSSCSEEEEEEECCCC----------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHH
T ss_pred HHHhcCeEEEEEecccccccccccccccc---ceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHH
Confidence 3458999999999 555444433322 111111 1111221 2334456799999999999999999
Q ss_pred HhhhhhhhHHHhccCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCCC-----CccEEEEEEeEee
Q 043730 114 YEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSLE-----SDSVSVSYLQLYM 188 (480)
Q Consensus 114 f~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~V~vS~~EIyn 188 (480)
|+.+ .|+|+++|+|||+||||||||||||||||.| .++|||||++++||+.+... .+.|+|||+||||
T Consensus 448 ~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g------~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 448 FEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSH------PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp GGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHC------TTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred HHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCC------CCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 9976 6999999999999999999999999999965 24699999999999987542 3479999999999
Q ss_pred chhcccCCCC---CCcceeeecCCCCceecCCCeEEEecCHHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEe
Q 043730 189 ETIQDLLDPA---NDNISIVEDPKTGDVSLPGATLVQIRDQQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRS 265 (480)
Q Consensus 189 E~v~DLL~~~---~~~l~i~e~~~~g~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 265 (480)
|+|+|||++. ...+.+++++..|.++|.|++++.|.|.+|++.+|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 521 e~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~ 600 (715)
T 4h1g_A 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY 600 (715)
T ss_dssp TEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEE
Confidence 9999999875 3457788888888899999999999999999999999999999999999999999999999999876
Q ss_pred eccCcccccccccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhC-CCCC
Q 043730 266 VVGREEDLSSEINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAEN-SAHV 344 (480)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~-~~~i 344 (480)
.... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||
T Consensus 601 ~~~~-------------------~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~v 661 (715)
T 4h1g_A 601 NSLT-------------------KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHV 661 (715)
T ss_dssp ETTT-------------------CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred ecCC-------------------CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Confidence 5432 2346799999999999999999999999999999999999999999999864 5899
Q ss_pred CCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccc
Q 043730 345 PLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVE 395 (480)
Q Consensus 345 PyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~ 395 (480)
|||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 662 pyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 662 PYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=2.2e-33 Score=232.51 Aligned_cols=97 Identities=44% Similarity=0.687 Sum_probs=92.1
Q ss_pred HHHhhhHHHHHHHHHHHhhC-CCCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccc
Q 043730 321 KSINLSLSALGKCINALAEN-SAHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLK 399 (480)
Q Consensus 321 ~~IN~SL~~L~~vI~aL~~~-~~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~ 399 (480)
.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 46999999999999999987 58999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHH
Q 043730 400 IKEEFDYKSLSRRLEIQL 417 (480)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~ 417 (480)
+|++.+.+.+.++|++|+
T Consensus 82 ~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 82 VNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CEEECCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHhh
Confidence 999999988888887665
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=3.5e-31 Score=226.75 Aligned_cols=96 Identities=45% Similarity=0.714 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHhhCC-CCCCCCCCcccccccccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhccccccccccc
Q 043730 324 NLSLSALGKCINALAENS-AHVPLRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKE 402 (480)
Q Consensus 324 N~SL~~L~~vI~aL~~~~-~~iPyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~~~~ 402 (480)
|+||++||+||.+|+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.+.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 043730 403 EFDYKSLSRRLEIQLDK 419 (480)
Q Consensus 403 ~~~~~~~~~~l~~~~~~ 419 (480)
+.+.+.+.++++.++++
T Consensus 81 ~~~~~~l~~~~~~e~~~ 97 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEK 97 (117)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99988777766655443
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-26 Score=222.47 Aligned_cols=262 Identities=13% Similarity=0.143 Sum_probs=171.3
Q ss_pred CCCCCEEEEEEcCCCC-ccccccCCCCCce-EEecccceEEEecCCCCCCCceeecccCCCCCChH--HHHhhhhhhhHH
Q 043730 48 GVPGRVRVAVRLRPRN-AEETVADADFADC-VELQTELKRLKLRKNNWDSDTYEFDEVFTESASQK--RVYEVVAKPVVE 123 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~-~~e~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~--~vf~~~~~plv~ 123 (480)
+.+|+|||+|||||.. +.. | +.+.... +.. +. ..+.|.||+||++.+.|+ +||+++ .++|+
T Consensus 21 ELKGnIRVFcrvrp~~~p~~---------~~v~y~~~~--I~v-~~--~~k~f~FDRVf~p~s~Qe~~~vf~E~-~~~i~ 85 (298)
T 2o0a_A 21 EQKGTMRCYAYVMEQNLPEN---------LLFDYENGV--ITQ-GL--SEHVYKFNRVIPHLKVSEDKFFTQEY-SVYHD 85 (298)
T ss_dssp HHHTCCEEEEEECGGGSCTT---------EEEETTTTE--EEE-TT--TCCEEECSEEEETTTSCHHHHHHHTT-HHHHH
T ss_pred HhhCceEEEEEeccccCCcc---------ceeecCccc--eee-cC--CCceEEeeeEECccccccHHHHHHHH-HHHHH
Confidence 3569999999999965 311 2 2222222 332 11 337899999999999999 999995 89999
Q ss_pred Hhcc-CCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhhcCC---CCccEEEEEEeEe-echhcccCCCC
Q 043730 124 SVLD-GYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILADVSL---ESDSVSVSYLQLY-METIQDLLDPA 198 (480)
Q Consensus 124 ~~l~-G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~~~~---~~~~V~vS~~EIy-nE~v~DLL~~~ 198 (480)
.+++ |||+||||||||||||| ||++..+|...+. ..+.+++||+||| ||.++|||...
T Consensus 86 scLd~GyNvcIfSyGQTGsGKT-----------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~ 148 (298)
T 2o0a_A 86 MCLNQKKNFNLISLSTTPHGSL-----------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 148 (298)
T ss_dssp HHHHTTCCEEEEEECSSCCHHH-----------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCC
T ss_pred HHHhCCCceEEEEECCCCCCcc-----------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCC
Confidence 9999 99999999999999999 9999999998866 6778999999999 99999999632
Q ss_pred C--CcceeeecCCCCceecCCCeEEEecC-HHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEEeeccCcccccc
Q 043730 199 N--DNISIVEDPKTGDVSLPGATLVQIRD-QQSFTELLRWGEAHRVAANTKLNTESSRSHAILMIHVKRSVVGREEDLSS 275 (480)
Q Consensus 199 ~--~~l~i~e~~~~g~~~v~gl~~~~v~s-~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 275 (480)
+ ....|+.+. .|...+.|++.+.|.+ ++|+..++..+... ..|+ +.-.|+.+.+...+...+++-
T Consensus 149 ~~~~k~eIk~~~-~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~-- 216 (298)
T 2o0a_A 149 SHNDKDSIKLKF-EKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNN-- 216 (298)
T ss_dssp C------CEEEE-CSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC--------
T ss_pred CCCCcceEEecC-CCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccC--
Confidence 2 245565554 4668899999999999 89887776222211 1221 234556665554211111110
Q ss_pred cccccccccCCCCCceeeeeEEEEeCCCCcccccCCCccchHHHHHHHhhhHHHHHHHHHHHhhCCCCCCCCCCcccccc
Q 043730 276 EINHASHLIKPSKPLVRKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPLRDSKLTRLL 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~s~L~lVDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~iPyRdSkLT~LL 355 (480)
....--++|+.+.-.. +...|.+ ++..+ -+-.|+++-+|
T Consensus 217 --------------~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il 255 (298)
T 2o0a_A 217 --------------DPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVL 255 (298)
T ss_dssp ---------------CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHH
T ss_pred --------------CCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHH
Confidence 0012346788764311 1223333 22222 35568888888
Q ss_pred cccCCCCceeeEEEeeCCCCCChHHhHHHHHHHHHhcccccccc
Q 043730 356 RDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLK 399 (480)
Q Consensus 356 ~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~I~n~~~ 399 (480)
+.-|. ..+-++++++..+. +--.-|..+++.++++|..+
T Consensus 256 ~~ll~-~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 256 KKLIS-DTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHH-HSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC---
T ss_pred HHHHh-cCcceEEEEecCCC----chhHHHHHHHHhhcccCccc
Confidence 87663 45778999996542 23347888888888877443
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.15 E-value=0.0063 Score=54.52 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=36.7
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..++||.....+..|+++++.+ ..+++++--.....++-||++|+|||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 3467888776666788888765 55665544333456788999999999998
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.00 E-value=0.02 Score=52.10 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCc-eeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYN-GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~aYGqtgSGKTyTm 147 (480)
.++||.+......+..+++.+ ..++...-.+.. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 467887766555677777754 445554433322 67889999999999997
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.31 E-value=0.03 Score=55.11 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=33.9
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++||.+......+..+++. +..+++..-.+....|+-||++|+||||.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 36787765544456666663 345555544444567888999999999998
No 35
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.31 E-value=0.21 Score=47.27 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=32.9
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhH-HHhc----cCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVV-ESVL----DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l----~G~n~ti~aYGqtgSGKTyTm 147 (480)
..+.||.+.+.+...+.+.+.+ ..+- ...+ ......++-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 3577999998877766665532 2211 0111 122345889999999999997
No 36
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.67 E-value=0.14 Score=49.87 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHhhhhhhhHHHhcc--CCc--eeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLD--GYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~--G~n--~ti~aYGqtgSGKTyTm 147 (480)
..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45566666666666553 222 36788999999999986
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.52 E-value=0.19 Score=44.00 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=21.4
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++..+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444444566677899999999999997
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.51 E-value=0.14 Score=48.50 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=22.4
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47889887754333333332 222222 3466888999999999986
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.67 E-value=0.21 Score=43.71 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=21.5
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444445566677899999999999987
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.61 E-value=0.23 Score=47.74 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=33.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccC---CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
...||.+.+.+..-+.+.+.+..|+. ..++.| ....++-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 46788888865555555555544433 122333 3457899999999999987
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.57 E-value=0.24 Score=47.31 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=32.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhc----cCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVL----DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l----~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.||.+.+.+..-+.+.+.+..++.. ..+ -.....++-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 578999988765555555544333221 111 123456889999999999987
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.52 E-value=0.34 Score=47.32 Aligned_cols=49 Identities=29% Similarity=0.532 Sum_probs=30.4
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+||.+... ..+...+.. +..++..-- +....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 36789887632 234445544 333443211 13346888999999999998
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.14 E-value=0.19 Score=49.75 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=20.2
Q ss_pred hccCCceeEEecCCCCCCccccc
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+-.|...+++-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34678889999999999999997
No 44
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.03 E-value=0.4 Score=41.58 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667999999999998
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.96 E-value=0.26 Score=47.91 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=33.0
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc----CCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD----GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~----G~n~ti~aYGqtgSGKTyTm 147 (480)
.++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 466888888665555566555444321 1111 23456899999999999987
No 46
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.77 E-value=0.16 Score=47.77 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=29.2
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhH-HHhccCC----ceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVV-ESVLDGY----NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~----n~ti~aYGqtgSGKTyTm 147 (480)
..++||.+.+.+....++-+ +...+- ..++.+. ...++-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 35788998876543333322 212110 1122222 223899999999999997
No 47
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.24 E-value=0.26 Score=48.39 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=29.3
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|.||.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 457899988753 33322 223334444455999999999999987
No 48
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.12 E-value=0.35 Score=49.82 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=51.6
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHH-Hhcc--CC--ceeEEecCCCCCCcccccc------c-------CCCCCCCCcc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVE-SVLD--GY--NGTVMAYGQTGTGKTFTLG------R-------LGDEDTSSRG 159 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKTyTm~------g-------~~~~~~~~~G 159 (480)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||++|+|||++.- | .+.-.....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 56888888766556666666666643 3443 32 2359999999999998741 0 0111223457
Q ss_pred hhHHHHHHHHhhcCCCC
Q 043730 160 IMVRSMEDILADVSLES 176 (480)
Q Consensus 160 ii~r~~~~lf~~~~~~~ 176 (480)
--.+.++++|.......
T Consensus 249 e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 78899999998765543
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.67 E-value=0.33 Score=47.97 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=24.8
Q ss_pred ChHHHHhhhhhhhHHHhc-cCCceeEEecCCCCCCccccc
Q 043730 109 SQKRVYEVVAKPVVESVL-DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 109 ~Q~~vf~~~~~plv~~~l-~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+++..+.+.. .+..++ .+....++-||++|+|||+++
T Consensus 23 gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 23 HREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34555554422 333333 345568899999999999997
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.46 E-value=0.31 Score=48.69 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=32.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHH-h---ccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVES-V---LDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~-~---l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...||.+.+.+..-+.+.+.+..|+... + +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 4568888876544444554444433211 1 2244567899999999999987
No 51
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.78 E-value=0.68 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=18.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999987
No 52
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.39 E-value=0.34 Score=45.54 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=29.9
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHH-Hhcc----CCceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVE-SVLD----GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~----G~n~ti~aYGqtgSGKTyTm 147 (480)
..+.||.+.+.+..-+.+.+. +..+.. ..+. .....++-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 356788888765444444332 222111 1111 12346899999999999987
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.32 E-value=0.54 Score=42.96 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=28.2
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.++||.++.. ..+..+++.+ ..+ +..+....++-||++|+|||+.+
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~l-~~~---~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGAL-KSA---ASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp TCSTTTSCC---CCHHHHHHH-HHH---HHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCChhhccCC-CCCHHHHHHH-HHH---HhCCCCCeEEEECCCCCCHHHHH
Confidence 3567776653 2234555432 222 22335567889999999999997
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.19 E-value=0.59 Score=48.25 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=52.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccCC----ceeEEecCCCCCCcccccc------c-------CCCCCCCCc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDGY----NGTVMAYGQTGTGKTFTLG------R-------LGDEDTSSR 158 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~----n~ti~aYGqtgSGKTyTm~------g-------~~~~~~~~~ 158 (480)
..+||.|-+-+..-+++.+.+.-|+. ...+..+ .-.|+-||++|+|||++.- | .+.-.....
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 45689998876666677777777765 3345433 3478999999999999741 0 011112334
Q ss_pred chhHHHHHHHHhhcCCCC
Q 043730 159 GIMVRSMEDILADVSLES 176 (480)
Q Consensus 159 Gii~r~~~~lf~~~~~~~ 176 (480)
|--.+.+..+|.......
T Consensus 257 Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHE 274 (437)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 777888899998765543
No 55
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.15 E-value=0.28 Score=45.96 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.4
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999987
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.83 E-value=0.43 Score=46.96 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=33.7
Q ss_pred eeecccCCCCCChHHHHhhhhhhhH-HHhccCC---ceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVV-ESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
.+||.|.+.+..-+.+.+.+..|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4688888876555555555555543 2444442 246889999999999986
No 57
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.78 E-value=0.25 Score=47.30 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=28.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccCC----ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDGY----NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~----n~ti~aYGqtgSGKTyTm 147 (480)
.++||.+.+.+....++-+ +...+- ..++.+. ...++-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 5778888876543333322 211110 1122222 123899999999999997
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.45 E-value=0.54 Score=48.46 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=37.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc--CC--ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
.-+||.|-+-+..-+++.+.+..|+.. ..+. |. --.|+-||++|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457899988877667777777777752 3443 32 346889999999999875
No 59
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.45 E-value=0.52 Score=43.01 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=18.6
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3445667876 67788999999987
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.19 E-value=0.46 Score=48.47 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=53.6
Q ss_pred eeecccCCCCCChHHHHhhhhhhhH-HHhccC--C--ceeEEecCCCCCCcccccc------c-------CCCCCCCCcc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVV-ESVLDG--Y--NGTVMAYGQTGTGKTFTLG------R-------LGDEDTSSRG 159 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G--~--n~ti~aYGqtgSGKTyTm~------g-------~~~~~~~~~G 159 (480)
-+||.|-+-+.--+++-+.+.-|+. ..+|.+ . .-.|+-||+.|+|||...- | ...-.....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 4688888877666777777777765 344543 2 3468999999999999741 0 0011122347
Q ss_pred hhHHHHHHHHhhcCCCCc
Q 043730 160 IMVRSMEDILADVSLESD 177 (480)
Q Consensus 160 ii~r~~~~lf~~~~~~~~ 177 (480)
--.+.++++|........
T Consensus 225 ese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 778899999987765543
No 61
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.85 E-value=0.5 Score=46.30 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=32.4
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccCC---ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
..+||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356888887655545555555444331 233332 246899999999999986
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.77 E-value=0.73 Score=47.45 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=29.3
Q ss_pred CCceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 95 SDTYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 95 ~~~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
...|+||....... +...+..+ ..+... .|....++-||++|+|||+.+
T Consensus 99 ~~~~tfd~fv~g~~-n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 99 NPDYTFENFVVGPG-NSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CTTCSGGGCCCCTT-THHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCCChhhcCCCCc-hHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 34688988653223 33344332 233322 231346889999999999998
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.66 E-value=0.62 Score=41.84 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567766 567789999999764
No 64
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.57 E-value=0.26 Score=47.42 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=28.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccCCc----eeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDGYN----GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~n----~ti~aYGqtgSGKTyTm 147 (480)
..+||.|-+.+.--+++.+.+..|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777776655555565555555432 2344332 22889999999999986
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.48 E-value=0.61 Score=41.87 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=17.9
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 345567766 567789999999873
No 66
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=80.48 E-value=18 Score=29.71 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 414 EIQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFAD 455 (480)
Q Consensus 414 ~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~ 455 (480)
.-|+++|+.+.+...+..++....|..+....++++.+.+..
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~ 79 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRR 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554443
No 67
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.85 E-value=0.68 Score=41.37 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343335899999999999987
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=79.60 E-value=0.49 Score=47.66 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=31.6
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccC---CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
.+.||.+.+.+.--+.+.+.+..|+.. .++.+ -...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 467888887654444444444333331 12222 2357899999999999986
No 69
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.51 E-value=0.75 Score=47.74 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=51.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccCC----ceeEEecCCCCCCcccccc------c-------CCCCCCCCc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTFTLG------R-------LGDEDTSSR 158 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~----n~ti~aYGqtgSGKTyTm~------g-------~~~~~~~~~ 158 (480)
.-+||.|-+-+.--+++.+.+.-|+.. ..+.++ --.|+-||+.|+|||++.- | ...-.....
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 357888888766666666666666652 344433 3579999999999998741 0 000112234
Q ss_pred chhHHHHHHHHhhcCCCC
Q 043730 159 GIMVRSMEDILADVSLES 176 (480)
Q Consensus 159 Gii~r~~~~lf~~~~~~~ 176 (480)
|--.+.++.+|.......
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 777888999998765543
No 70
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.46 E-value=0.73 Score=45.93 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=33.2
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccCC---ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
..+||.|.+.+..-+.+.+.+..|+- ..++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 45688888876555556555544432 2333332 235888999999999986
No 71
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.06 E-value=0.74 Score=47.19 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=21.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..++..-...+.-.|+||||||.||
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 445555555667889999999999998
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.72 E-value=4.2 Score=42.11 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Q 043730 430 AFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQ--MEYMESVKKLEERC 479 (480)
Q Consensus 430 ~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~l~e~~ 479 (480)
..++.+.++..+++.+++.+++.+..++.+-+.-+. .+...++++||..|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334434444445555555555555544422221111 14445566777655
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.30 E-value=0.77 Score=42.62 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=18.7
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455667877 57788999999987
No 74
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.11 E-value=0.49 Score=43.96 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=19.0
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445667877 577899999999873
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.82 E-value=1.1 Score=44.21 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=27.8
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCc-e--eEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYN-G--TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~--ti~aYGqtgSGKTyTm 147 (480)
|.++.+++ +++..+.+ ...+..++.|.. . .++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l-~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQL-DILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHH-HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHH-HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44455544 34444443 233445544433 3 6889999999999997
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.52 E-value=0.9 Score=44.65 Aligned_cols=40 Identities=40% Similarity=0.552 Sum_probs=25.1
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|+.+++ |+++.+.+ -..+-.|--..++-||+.|+|||+++
T Consensus 24 ~~~~~g----~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 24 LDEVYG----QNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp GGGCCS----CHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHhcC----cHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHH
Confidence 566664 45554432 22333453333778999999999997
No 77
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.07 E-value=0.85 Score=45.03 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=30.2
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCce--eEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNG--TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~--ti~aYGqtgSGKTyTm 147 (480)
.+.||.+.+. +.+.+.. ..+++.+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~----~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4567777764 3333322 3344555556553 7899999999999987
No 78
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.51 E-value=0.85 Score=45.67 Aligned_cols=27 Identities=44% Similarity=0.577 Sum_probs=20.3
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+.+++.--.+.+.-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344445444557888899999999998
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.28 E-value=0.95 Score=41.70 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=18.5
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3445667877 466789999999874
No 80
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.92 E-value=3.7 Score=40.09 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=74.8
Q ss_pred CCCCCEEEEEEcCCCCccccccCCCCCceEEecccceEEEecCCCCCCCceeecccCCCCC-ChHHHHhhhhhhhHHHhc
Q 043730 48 GVPGRVRVAVRLRPRNAEETVADADFADCVELQTELKRLKLRKNNWDSDTYEFDEVFTESA-SQKRVYEVVAKPVVESVL 126 (480)
Q Consensus 48 ~~~~~v~V~vRvRP~~~~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~vf~~~~~plv~~~l 126 (480)
+.+|.||+++=+-+-..++ .+.++-....+. +......|.|++|++... +-.+++..-++..++-++
T Consensus 56 ElKG~IRcFAYi~~~~~p~---------~~~idY~~~~It---~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL 123 (333)
T 4etp_B 56 EQKGTMRVYAYVMEQNLPE---------NLLFDYENGVIT---QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMAL 123 (333)
T ss_dssp HHHTCCEEEEEECCSSCCS---------SCEEETTTTEEE---C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHH
T ss_pred HhcCcEEEEEEECcccCCc---------cEEEecccceEe---ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHH
Confidence 3468999998886633222 233333333333 122567999999997765 334444444588999999
Q ss_pred -cCCceeEEecCCCCCCcccccccCCCCCCCCcchhHHHHHHHHhh--cCCCCccEEEEEEeEeech-hcccCCCC
Q 043730 127 -DGYNGTVMAYGQTGTGKTFTLGRLGDEDTSSRGIMVRSMEDILAD--VSLESDSVSVSYLQLYMET-IQDLLDPA 198 (480)
Q Consensus 127 -~G~n~ti~aYGqtgSGKTyTm~g~~~~~~~~~Gii~r~~~~lf~~--~~~~~~~V~vS~~EIynE~-v~DLL~~~ 198 (480)
.+.|+.||..|..- ..-+---++..|... +-.+.+.+.+-|+.+-++. ..|||.+.
T Consensus 124 ~~~~NfslIsis~~~----------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 124 NQKKNFNLISLSTTP----------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp HTTCCEEEEEEESSC----------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred ccCCCeeEEEecCCC----------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 89999999987441 112223333333322 0113347888888887765 79999875
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=75.81 E-value=0.96 Score=41.11 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=17.9
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 445567877 566679999999874
No 82
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=75.75 E-value=0.74 Score=44.28 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999987
No 83
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.67 E-value=1 Score=44.32 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=17.1
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999997
No 84
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.15 E-value=0.91 Score=46.68 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=49.8
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHH-Hhcc--CC--ceeEEecCCCCCCcccccc------c-------CCCCCCCCcc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVE-SVLD--GY--NGTVMAYGQTGTGKTFTLG------R-------LGDEDTSSRG 159 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~aYGqtgSGKTyTm~------g-------~~~~~~~~~G 159 (480)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||.+.- | ...-.....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 45777776655556666666666542 3443 32 3579999999999998741 0 0011123457
Q ss_pred hhHHHHHHHHhhcCCCC
Q 043730 160 IMVRSMEDILADVSLES 176 (480)
Q Consensus 160 ii~r~~~~lf~~~~~~~ 176 (480)
--.+.++.+|.......
T Consensus 259 esek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGENA 275 (437)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 77899999998766544
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.13 E-value=0.82 Score=43.29 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=18.7
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445567766 678899999999873
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.08 E-value=43 Score=35.05 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhh
Q 043730 467 EYMESVKKLEERC 479 (480)
Q Consensus 467 ~~~~~~~~l~e~~ 479 (480)
....++++|++.+
T Consensus 569 ~~~~~~~~l~~~~ 581 (597)
T 3oja_B 569 LKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3445688888765
No 87
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.45 E-value=1.1 Score=40.99 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=18.1
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4455678775 66789999999874
No 88
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.10 E-value=1.3 Score=43.80 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=28.1
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccC-CceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDG-YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~aYGqtgSGKTyTm 147 (480)
|.++.+++ +++..+.+. ..+..++.| ....++-||++|+|||+++
T Consensus 17 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 17 SVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44455544 344444442 234444443 3458999999999999987
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=73.92 E-value=1.2 Score=43.19 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=20.3
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..++.|...-+++.++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456667774445788899999999873
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=73.89 E-value=0.58 Score=42.12 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+..-|.+++. .+++|.+ ++..++||+|||.+.
T Consensus 32 ~~l~~~Q~~~i~--------~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 32 LQLRPYQMEVAQ--------PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp CCCCHHHHHHHH--------HHHTTCC--EEEECSCHHHHHHHH
T ss_pred CCchHHHHHHHH--------HHhcCCC--EEEEcCCCCCHHHHH
Confidence 344555666554 3445665 567899999999986
No 91
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.68 E-value=1.3 Score=45.58 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=30.3
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCc--eeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
.|.||.+.+. +++.+.+ ..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG~----~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQ----ENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESC----HHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCH----HHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 4667777654 4554443 335555555653 35788999999999875
No 92
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.66 E-value=1.2 Score=41.57 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567877 466679999999874
No 93
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.62 E-value=0.89 Score=46.84 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=31.3
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccC---CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
...||.|.+.+.--+.+.+.+..|+- ..++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788887754433344444433332 123333 2346888999999999986
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.58 E-value=1.4 Score=41.87 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=15.9
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
-...+.-.|+||||||.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456778899999999998
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.25 E-value=20 Score=35.64 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 043730 408 SLSRRLEIQLDKLIVE 423 (480)
Q Consensus 408 ~~~~~l~~~~~~l~~e 423 (480)
++...|+..+.-|+..
T Consensus 113 e~s~eLe~~i~~lk~~ 128 (390)
T 1deq_A 113 QINEDLRSRIEILRRK 128 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 96
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.93 E-value=1.4 Score=40.53 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=17.3
Q ss_pred HHHhccCCceeEEecCCCCCCcccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
+..+++|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 344567877 45677999999987
No 97
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=71.44 E-value=1.5 Score=41.15 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445567866 456679999999874
No 98
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.40 E-value=1.6 Score=43.51 Aligned_cols=25 Identities=44% Similarity=0.741 Sum_probs=19.5
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3455667887 577899999999873
No 99
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=71.20 E-value=1.2 Score=41.18 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=18.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..+.+|.+ ++..|+||||||..+
T Consensus 69 ~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 4445556654 567899999999865
No 100
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=70.65 E-value=1.5 Score=45.77 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=30.4
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHH-Hhc----cCCceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVE-SVL----DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l----~G~n~ti~aYGqtgSGKTyTm 147 (480)
..||.+.+.+..-+.+.+.+..++-. .++ ......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 45666666544445555554433211 111 234557899999999999986
No 101
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=70.55 E-value=1.2 Score=41.24 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=17.5
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.|. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 4455678775 55669999999883
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.24 E-value=1 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=19.2
Q ss_pred HHHhccCCc--eeEEecCCCCCCccccc
Q 043730 122 VESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
+..++.|.- .+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 344555532 46999999999999986
No 103
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.99 E-value=1.5 Score=42.82 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=25.6
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+.+.+.+.- ...+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 36666664332 222333334553334888999999999987
No 104
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=69.29 E-value=2 Score=44.27 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=28.1
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
||.++ .|+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 25 l~~iv----Gq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYI----GQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCC----SCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhC----CcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 45554 45666532 133444444565568999999999999986
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.99 E-value=2 Score=41.20 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.6
Q ss_pred hhHHHhccCC---ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGY---NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~---n~ti~aYGqtgSGKTyTm 147 (480)
..+..+++|. --||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466778876 347999999999999986
No 106
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.70 E-value=1.9 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.2
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+..|+-||++|+|||+..
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 445788999999999986
No 107
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=68.30 E-value=1.9 Score=40.11 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=25.0
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..-|.+..-|.+.+. .++++.+ ++.+|+||+|||+..
T Consensus 87 ~~~~~~~l~~~Q~~ai~--------~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp CCCCCCCCCHHHHHHHH--------HHTTTSE--EEEEESSSTTHHHHH
T ss_pred cccCCCCcCHHHHHHHH--------HHHhCCC--EEEEeCCCCCHHHHH
Confidence 33334455555665544 3455655 566789999999986
No 108
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.14 E-value=2.2 Score=41.49 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=28.0
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhc--cCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVL--DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l--~G~n~ti~aYGqtgSGKTyTm 147 (480)
+||.+.+. +.+.+.+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 46666654 4444443 23344433 344457899999999999987
No 109
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.05 E-value=1.1 Score=40.93 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=17.5
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.|+ +..++||||||.+.
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3445567664 56789999999873
No 110
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=67.93 E-value=1.9 Score=44.26 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=20.7
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777666789999999999977
No 111
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.05 E-value=2 Score=38.54 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999987
No 112
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.04 E-value=1.9 Score=43.00 Aligned_cols=24 Identities=42% Similarity=0.732 Sum_probs=18.3
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445667877 567789999999763
No 113
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.94 E-value=1.9 Score=43.38 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=19.6
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..+.-.....+.-.|+||||||.+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443334556788999999999998
No 114
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.85 E-value=53 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 406 YKSLSRRLEIQLDKLIVENERQQK 429 (480)
Q Consensus 406 ~~~~~~~l~~~~~~l~~e~~~~~~ 429 (480)
-+.++..|..+++.|+.+++....
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888777765433
No 115
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=66.76 E-value=1.8 Score=36.78 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.6
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45556899999999999886
No 116
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=66.74 E-value=2.1 Score=42.51 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=19.4
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.+..++..++||||||.+
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHH
Confidence 34555667555678889999999987
No 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.65 E-value=3.6 Score=39.53 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=20.9
Q ss_pred hhhhHHHhccCC-----ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDGY-----NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G~-----n~ti~aYGqtgSGKTyTm 147 (480)
...++..++.|+ ...|+..|++|||||+..
T Consensus 16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 344455555443 346888999999999885
No 118
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.13 E-value=2.9 Score=40.23 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=26.7
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhc--cCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVL--DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l--~G~n~ti~aYGqtgSGKTyTm 147 (480)
+||.+.+.+ .+...+ ..++..+. .+....++-||++|+|||+..
T Consensus 10 ~~~~~ig~~----~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQE----RLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSCH----HHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCHH----HHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 466666643 333332 22333322 234567888999999999987
No 119
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.05 E-value=2.1 Score=42.06 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+++|-...++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 44556674345678899999999863
No 120
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.02 E-value=3.1 Score=43.02 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.||.|.+. ++.... +++.+-.+....++-||++|+|||+..
T Consensus 178 ~ld~iiGr----~~~i~~----l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 178 SLDPVIGR----SKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CSCCCCCC----HHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCc----HHHHHH----HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 35666654 333333 333333455556788999999999987
No 121
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=66.00 E-value=1.6 Score=42.56 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=22.3
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..|+++...+ ...+..|. .++-||++|+|||+.+
T Consensus 30 ~g~~~~~~~l----~~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 30 VGQKYMINRL----LIGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CSCHHHHHHH----HHHHHHTC--CEEEESCCCHHHHHHH
T ss_pred eCcHHHHHHH----HHHHHcCC--eEEEECCCCCcHHHHH
Confidence 3455555443 33333443 5788999999999987
No 122
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.78 E-value=2 Score=40.87 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999987
No 123
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.29 E-value=1.8 Score=45.07 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhH-HHhccC----CceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVV-ESVLDG----YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G----~n~ti~aYGqtgSGKTyTm 147 (480)
..++||.|.+.+..-+++.+-+ ..+- ...+.. ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3567888887644333333321 1110 011211 2345899999999999986
No 124
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=63.90 E-value=2.5 Score=40.52 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=25.3
Q ss_pred ecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 100 FDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 100 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|+.+.+ |+++.+.+. ..+ -.|....++-||++|+|||++.
T Consensus 24 ~~~~~g----~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp TTTCCS----CHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred HHHhhC----CHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 555544 455555432 222 2354434889999999999987
No 125
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=63.81 E-value=2.4 Score=40.63 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=17.4
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344556776 456789999999874
No 126
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.51 E-value=47 Score=27.28 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 418 DKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFA 454 (480)
Q Consensus 418 ~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~ 454 (480)
++.+..-..+.++++.|+..+..++|+..+++|+.-+
T Consensus 63 ~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 63 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333456777888888888888877777776543
No 127
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.39 E-value=63 Score=32.90 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 425 ERQQKAFDDEVERIHLEAQNRISEVERNFADAL 457 (480)
Q Consensus 425 ~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~ 457 (480)
..+.+..++.+.....+++.+++.+++....++
T Consensus 99 ~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 99 LEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444333
No 128
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=63.18 E-value=3.4 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHhccC---CceeEEe--cCCCCCCccccc
Q 043730 123 ESVLDG---YNGTVMA--YGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G---~n~ti~a--YGqtgSGKTyTm 147 (480)
..+..| -...++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444555 4567888 999999999997
No 129
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=63.07 E-value=2.4 Score=44.52 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.0
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.+ +.-.|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5766 567899999999998
No 130
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=62.94 E-value=2.4 Score=42.04 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 344556776 567789999999763
No 131
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.81 E-value=1.8 Score=45.46 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=28.5
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-HhccCC----ceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLDGY----NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~----n~ti~aYGqtgSGKTyTm 147 (480)
.++||.|.+.+..-.++-+- +..+-. ..+... ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 56788888764433333322 111110 122222 224899999999999986
No 132
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.37 E-value=2.1 Score=41.04 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999987
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=62.29 E-value=2.4 Score=40.43 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=16.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444899999999999987
No 134
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.16 E-value=2.8 Score=44.38 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=17.3
Q ss_pred HHhccCCceeEEecCCCCCCccccc
Q 043730 123 ESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+.+.+|.+.++++ ++||||||.++
T Consensus 192 ~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 192 QSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHhcCCCceEEE-ecCCCChHHHH
Confidence 3344576655555 89999999997
No 135
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.99 E-value=2.7 Score=41.80 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=17.8
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455678774 66789999999863
No 136
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.27 E-value=3 Score=41.79 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.1
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445567876 57889999999984
No 137
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=61.22 E-value=2.8 Score=45.23 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=17.6
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..++..-.. .+-.|+.|||||+|+
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHH
Confidence 34455543333 356799999999997
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=60.95 E-value=4.6 Score=38.97 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788999999999997
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=60.02 E-value=3.1 Score=37.98 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred hhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++.| . ...+.-+|++|+|||..+
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 34567777754 3 346778999999999987
No 140
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=59.70 E-value=5.3 Score=44.31 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=51.1
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhH-HHhccCCc----eeEEecCCCCCCcccccccCCCC-------------CCCCc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVV-ESVLDGYN----GTVMAYGQTGTGKTFTLGRLGDE-------------DTSSR 158 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~n----~ti~aYGqtgSGKTyTm~g~~~~-------------~~~~~ 158 (480)
..+||.|-+-+..-+++.+.+.-|+. ..++.++. ..|+-||+.|+|||...--.... .....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 45788888877777777777766665 34666654 46999999999999874100000 01223
Q ss_pred chhHHHHHHHHhhcCCC
Q 043730 159 GIMVRSMEDILADVSLE 175 (480)
Q Consensus 159 Gii~r~~~~lf~~~~~~ 175 (480)
|-....++.+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 55667778888765443
No 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=59.70 E-value=3.1 Score=43.36 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.+..++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 45566777445567889999999997
No 142
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=59.13 E-value=2.4 Score=40.26 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=15.6
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+++|.++ +..++||+|||.+.
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHH
Confidence 34445444 33899999999986
No 143
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=58.79 E-value=3.3 Score=42.49 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=19.7
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
++..+++|.+. ++..|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 45677888775 46779999999996
No 144
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=58.41 E-value=3.5 Score=40.50 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=18.3
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455667876 456679999999874
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.66 E-value=4.1 Score=39.92 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999987
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.52 E-value=4.1 Score=38.16 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHhhhhhhhHHHhccCC-ceeEEecCCCCCCccccc
Q 043730 111 KRVYEVVAKPVVESVLDGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 111 ~~vf~~~~~plv~~~l~G~-n~ti~aYGqtgSGKTyTm 147 (480)
+.+|+.+...++.....+. ...|+-.|++|||||+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3455554444443333222 346888999999999875
No 147
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=57.20 E-value=4.2 Score=39.38 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45677889999999999876
No 148
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=56.78 E-value=4.3 Score=42.47 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=19.4
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
++..++.|-+--+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45556655555678889999999986
No 149
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=56.53 E-value=3.8 Score=41.67 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=18.3
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3455678877 56778999999986
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=56.36 E-value=6 Score=38.67 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999986
No 151
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.19 E-value=3.1 Score=46.51 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=26.3
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.||.|++. ++... .+++.+..+....++-||++|+|||+.+
T Consensus 168 ~ld~viGr----~~~i~----~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 168 KLDPVIGR----DEEIR----RVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CSCCCCSC----HHHHH----HHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CCcccCCc----HHHHH----HHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 45665554 33333 3444444555556788999999999987
No 152
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=56.06 E-value=6.2 Score=42.74 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=30.6
Q ss_pred eeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 98 YEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 98 f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+... .|..+|..-++.. ++.+-.|... ....|.|||||||||
T Consensus 2 ~~~~~~-~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTM 45 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHH
T ss_pred CCCCCC-CCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHH
Confidence 444444 8888998877653 4555566533 345699999999998
No 153
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=55.58 E-value=5 Score=42.85 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=18.5
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
+|+.+++|.+ +++.++||+|||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 3455667887 56778999999986
No 154
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.41 E-value=4.5 Score=37.00 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=17.7
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++++-.|--.+ -.|++|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 444554555444 4799999999998
No 155
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.33 E-value=4.4 Score=36.50 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=19.5
Q ss_pred hhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-++.++. |. ...+.-+|++|+|||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566664 43 234566899999999987
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.29 E-value=4.3 Score=38.69 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=16.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 344333889999999999986
No 157
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=55.09 E-value=4.7 Score=36.33 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.0
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
-.-.|.-.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3345666799999999987
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.87 E-value=3.2 Score=36.30 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||+.+
T Consensus 11 i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999998
No 159
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.38 E-value=62 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.3
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999873
No 160
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.28 E-value=4 Score=39.80 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=14.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999987
No 161
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=54.20 E-value=4.6 Score=36.18 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=22.4
Q ss_pred hhhHHHhcc-CCc--eeEEecCCCCCCccccc
Q 043730 119 KPVVESVLD-GYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~-G~n--~ti~aYGqtgSGKTyTm 147 (480)
-+-++.++. |+. ..+.-+|++|+|||..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 355777775 553 46788999999999987
No 162
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.07 E-value=2.6 Score=41.51 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=17.9
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.+ ++..++||||||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455567776 46678999999987
No 163
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.83 E-value=4.6 Score=41.78 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=18.4
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567877 466789999999874
No 164
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=52.45 E-value=4.3 Score=39.27 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344455632 3467789999999874
No 165
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=51.88 E-value=1.2e+02 Score=26.22 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=3.3
Q ss_pred ccccccCC
Q 043730 398 LKIKEEFD 405 (480)
Q Consensus 398 ~~~~~~~~ 405 (480)
+.++..++
T Consensus 16 V~VK~iVT 23 (150)
T 4dci_A 16 ITVRAVVT 23 (150)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEC
Confidence 34444443
No 166
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=51.76 E-value=3.8 Score=43.92 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+..++..|++|||||+|+
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 346788999999999987
No 167
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.69 E-value=5.2 Score=41.23 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567876 456689999999873
No 168
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=51.50 E-value=5.3 Score=40.73 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+..-|.+.++ .+++|.+ ++..++||+|||.+.
T Consensus 92 ~~l~~~Q~~ai~--------~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 92 ISLRDYQEKALE--------RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp CCBCHHHHHHHH--------HHTTTTE--EEEECCTTSCHHHHH
T ss_pred CCcCHHHHHHHH--------HHHhcCC--EEEEeCCCCCHHHHH
Confidence 344455655544 4455544 566789999999985
No 169
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=51.17 E-value=6.1 Score=40.51 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..|.+.+..+.. .+.+| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~----~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcC-CCEEEEEeCCCCCHHHHH
Confidence 4578887766532 22233 347888999999999987
No 170
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.99 E-value=6.1 Score=43.84 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=36.1
Q ss_pred CceeecccCCCCCChHHHHhhhhhhhHH-HhccC----CceeEEecCCCCCCccccc
Q 043730 96 DTYEFDEVFTESASQKRVYEVVAKPVVE-SVLDG----YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 96 ~~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G----~n~ti~aYGqtgSGKTyTm 147 (480)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578999988877666777666554442 23332 2345888999999999875
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.11 E-value=5.6 Score=35.84 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=21.1
Q ss_pred hhhHHHhcc-CCc--eeEEecCCCCCCccccc
Q 043730 119 KPVVESVLD-GYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~-G~n--~ti~aYGqtgSGKTyTm 147 (480)
-+-++.++. |.. ..+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 355677774 442 45777899999999987
No 172
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=50.08 E-value=6.4 Score=35.24 Aligned_cols=18 Identities=22% Similarity=0.099 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|.-.|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778899999999987
No 173
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=50.00 E-value=4.5 Score=41.27 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.2
Q ss_pred hccCCceeEEecCCCCCCccccc
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999986
No 174
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=49.97 E-value=4 Score=40.87 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=13.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-++..|+||||||++|
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 33566799999999997
No 175
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.93 E-value=4.1 Score=40.41 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=15.7
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999986
No 176
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.90 E-value=5.8 Score=42.67 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=18.5
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++.+++|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445566776 567789999999874
No 177
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.34 E-value=1.2e+02 Score=30.56 Aligned_cols=20 Identities=0% Similarity=-0.127 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 043730 405 DYKSLSRRLEIQLDKLIVEN 424 (480)
Q Consensus 405 ~~~~~~~~l~~~~~~l~~e~ 424 (480)
+.+...+.++.+++++..++
T Consensus 370 t~eeal~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGL 389 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555444
No 178
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.27 E-value=5 Score=34.18 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999875
No 179
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=49.14 E-value=4.3 Score=40.08 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.4
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999985
No 180
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=49.04 E-value=6.8 Score=41.33 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=18.3
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
+|..++.|-+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455644444567888999999986
No 181
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=48.93 E-value=5.7 Score=42.62 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++..|++|||||+|+
T Consensus 196 ~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 34567899999999996
No 182
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.35 E-value=7.8 Score=37.59 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.8
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..+.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999998
No 183
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.25 E-value=4.5 Score=37.82 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..||..|..|+||||+|
T Consensus 7 l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 45899999999999998
No 184
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.20 E-value=4.8 Score=35.75 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455799999999987
No 185
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=47.55 E-value=4.9 Score=36.29 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666799999999997
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=47.53 E-value=9.6 Score=37.45 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=15.4
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...+.-.|++|+|||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999998
No 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=47.47 E-value=5.5 Score=36.31 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=19.9
Q ss_pred hhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345666543 3 346678899999999985
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=47.37 E-value=4.9 Score=35.33 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999987
No 189
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=47.09 E-value=4.8 Score=35.60 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999997
No 190
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=47.08 E-value=6.6 Score=39.23 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++| .++..++||+|||.+.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 3455667 3455689999999986
No 191
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=46.61 E-value=7.2 Score=43.13 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..-|.+++..+ ....-.|....++..|+||||||...
T Consensus 370 t~~Q~~ai~~I----~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 370 TNAQKRAHQEI----RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CHHHHHHHHHH----HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CHHHHHHHHHH----HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 33454444433 33333455556788999999999874
No 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.52 E-value=1.1e+02 Score=32.49 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=12.2
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+-...|...|.+|+|||+.|
T Consensus 35 ~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 344445556666666666654
No 193
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.49 E-value=5.2 Score=35.52 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999998
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=45.44 E-value=4.6 Score=39.09 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=17.1
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999987
No 195
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.32 E-value=5.2 Score=38.12 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=15.9
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3556778899999999987
No 196
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=45.30 E-value=4.5 Score=41.03 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.2
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.+.-++.+|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3566788999999999987
No 197
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.26 E-value=5.2 Score=35.93 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999998
No 198
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=44.79 E-value=1.2e+02 Score=25.20 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043730 453 FADALEKEKLKCQMEYM 469 (480)
Q Consensus 453 ~~~~~e~~~~~~~~~~~ 469 (480)
+..-+.+++..+|.-+.
T Consensus 41 L~~LI~KWr~asq~aae 57 (122)
T 3viq_A 41 LQTLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44456777777775333
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.66 E-value=8.8 Score=41.99 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=25.8
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.||.+.+. ++.... +++.+.......++-||++|+|||+.+
T Consensus 184 ~~d~~iGr----~~~i~~----l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 184 GIDPLIGR----EKELER----AIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCCCCSC----HHHHHH----HHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred CCCCccCC----HHHHHH----HHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 35555553 333333 344444445556788999999999986
No 200
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.61 E-value=6.3 Score=33.94 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788999999999875
No 201
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=44.58 E-value=5.8 Score=42.28 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.0
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
.++.++..|..|||||+|+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 3556788899999999997
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.17 E-value=5.3 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999987
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.91 E-value=6.7 Score=38.11 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35566799999999998
No 204
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.85 E-value=10 Score=41.51 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=26.0
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.||.|.+. ++..+. +++.+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG~----~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIGR----SKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCCC----HHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccCc----hHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 35555554 443333 333343455556888999999999986
No 205
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=43.82 E-value=8.6 Score=41.29 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=17.7
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 344567877 467789999999863
No 206
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=43.82 E-value=6.6 Score=33.94 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999885
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.81 E-value=11 Score=41.43 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999986
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=43.49 E-value=7.6 Score=41.28 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.7
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++..|..|||||+++
T Consensus 205 ~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 45677899999999997
No 209
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.35 E-value=81 Score=32.71 Aligned_cols=40 Identities=3% Similarity=0.100 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 430 AFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQMEYME 470 (480)
Q Consensus 430 ~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~~~~~ 470 (480)
+|+..+..|+.++++++. .-+.|+..+++++.+-|.-+.+
T Consensus 114 ELRRrIqyLKekVdnQls-nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQ-HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555552 3345555666555544443333
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=43.27 E-value=8.4 Score=40.23 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=18.4
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++..+..|. -|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 334445554 5678999999999986
No 211
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=42.98 E-value=7 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999874
No 212
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=42.92 E-value=7.7 Score=39.57 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=16.4
Q ss_pred hccCCceeEEecCCCCCCccccc
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 456766 467889999999983
No 213
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=42.15 E-value=6.7 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999997
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.95 E-value=7 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999986
No 215
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.69 E-value=7 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999987
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=41.68 E-value=6.8 Score=35.80 Aligned_cols=16 Identities=56% Similarity=0.615 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4555899999999987
No 217
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=41.65 E-value=8.8 Score=42.58 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++..|+.|||||+|+
T Consensus 377 ~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTS 392 (802)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4577999999999997
No 218
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.55 E-value=8.1 Score=40.33 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=15.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999987
No 219
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.28 E-value=9.9 Score=43.26 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 105 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.++.-|.++ |..+++|.+ ++..|+||||||.+
T Consensus 39 ~l~~~Q~~a--------I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 39 ELDTFQKEA--------VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp CCCHHHHHH--------HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred CCCHHHHHH--------HHHHHcCCC--EEEEECCCCcHHHH
Confidence 345556544 445567765 67789999999964
No 220
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.90 E-value=8.4 Score=35.17 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999997
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.82 E-value=13 Score=41.26 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+.++-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 58899999999999986
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.40 E-value=13 Score=40.61 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57899999999999987
No 223
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=40.22 E-value=9.3 Score=42.36 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++..|+.|||||+|+
T Consensus 372 ~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp SEEEEECCTTSCHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34577899999999997
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.12 E-value=7.5 Score=34.93 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||.++
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999998
No 225
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=39.80 E-value=17 Score=39.25 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=34.1
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|..-.-|.|...|..-++.+ ++.+-.|... ....|.|||||||+|
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHH
Confidence 477777789999999887764 4555566432 345699999999998
No 226
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=39.68 E-value=8.2 Score=41.59 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=15.8
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
++.++..|..|||||+||
T Consensus 15 ~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp SSEEEECCCTTSCHHHHH
T ss_pred CCCEEEEeCCCCChHHHH
Confidence 566788899999999998
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.41 E-value=7.4 Score=34.91 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999998
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=38.88 E-value=14 Score=38.54 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5677899999999998
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=38.69 E-value=6.8 Score=38.48 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=15.0
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.+ +.-.|+||||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5654 455699999999987
No 230
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.63 E-value=11 Score=41.58 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=18.0
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445567876 466789999999874
No 231
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=38.55 E-value=6.7 Score=38.99 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=15.2
Q ss_pred ccCCceeEEecCCCCCCccccc
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm 147 (480)
-.|.+.. -.|+||||||+++
T Consensus 173 ~~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEE--EEESSSSCHHHHH
T ss_pred hcCCEEE--EECCCCCCHHHHH
Confidence 3566544 4599999999998
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.52 E-value=8.1 Score=37.31 Aligned_cols=17 Identities=47% Similarity=0.759 Sum_probs=14.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999998
No 233
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=38.46 E-value=13 Score=40.49 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999874
No 234
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.33 E-value=11 Score=42.63 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=22.4
Q ss_pred cCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 103 VFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 103 Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
-+.+..-|.++ +..+++|.| ++..++||||||.+.
T Consensus 246 ~~~~r~~Q~~a--------i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 246 TKKARSYQIEL--------AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp --CCCHHHHHH--------HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred CCCCCHHHHHH--------HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 34444445554 344567877 456789999999874
No 235
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=38.06 E-value=6.3 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=17.9
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+|+.+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34555678775 55679999999853
No 236
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=38.01 E-value=7.9 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999998
No 237
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.88 E-value=8.9 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999875
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=37.79 E-value=9.5 Score=33.94 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999885
No 239
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.77 E-value=9 Score=32.88 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999986
No 240
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=37.69 E-value=11 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999987
No 241
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.64 E-value=9.3 Score=35.76 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999999864
No 242
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=37.62 E-value=7.2 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||+.|+|||+.+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999997
No 243
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=37.62 E-value=8.4 Score=39.67 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=21.8
Q ss_pred CCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 105 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..-|.+.++. ++.|.+ ++..|+||||||.+.
T Consensus 113 ~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 113 EPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp CCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHH
T ss_pred CCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHH
Confidence 455556555443 344544 466799999999985
No 244
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.57 E-value=2.4e+02 Score=25.66 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=10.1
Q ss_pred CCChHHhHHHHHHHHHh
Q 043730 375 PRHRGETASTILFGQRA 391 (480)
Q Consensus 375 ~~~~~eTl~TL~fa~ra 391 (480)
.+..+.+...+.|+-.+
T Consensus 117 ~d~~e~i~elfd~~~~~ 133 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDT 133 (213)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 33343335778888666
No 245
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=37.49 E-value=7.7 Score=33.76 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999886
No 246
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=37.41 E-value=9.5 Score=32.61 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.1
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
.+-+|++|||||..|
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999987
No 247
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=37.17 E-value=11 Score=33.41 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.8
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|.-.|.+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446777899999999876
No 248
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=37.13 E-value=12 Score=38.08 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999983
No 249
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.12 E-value=1.9e+02 Score=29.95 Aligned_cols=24 Identities=4% Similarity=-0.099 Sum_probs=11.2
Q ss_pred EEeeCCCCCChHHhHHHHHHHHHh
Q 043730 368 IVTIGPSPRHRGETASTILFGQRA 391 (480)
Q Consensus 368 I~~isp~~~~~~eTl~TL~fa~ra 391 (480)
+||-.+........+..|.....+
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~ 414 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVV 414 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHhhHHHHh
Confidence 455544444444444444444333
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.01 E-value=26 Score=33.68 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|...|..|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999998
No 251
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=36.98 E-value=14 Score=40.65 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999874
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=36.93 E-value=8.9 Score=38.23 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.9
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35777899999999998
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=36.92 E-value=13 Score=36.45 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=23.0
Q ss_pred hhhhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+ ...+.-||++|||||..+
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456788886 44 346788999999999986
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=36.68 E-value=9.8 Score=35.22 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.3
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||..|+|||..+
T Consensus 12 G~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL 29 (223)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred cEEEEEECCCCCcHHHHH
Confidence 356788999999999987
No 255
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=36.65 E-value=12 Score=32.14 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred hHHHhcc-CCceeEEecCCCCCCccccc
Q 043730 121 VVESVLD-GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~-G~n~ti~aYGqtgSGKTyTm 147 (480)
+++.++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4445555 55667888999999999887
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=36.44 E-value=19 Score=34.47 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHhhhhhhhHHHhc--cCCceeEEecCCCCCCccccc
Q 043730 112 RVYEVVAKPVVESVL--DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 112 ~vf~~~~~plv~~~l--~G~n~ti~aYGqtgSGKTyTm 147 (480)
++++.++..+..... .+-...|.-.|.+|||||+.+
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 355554444433212 233446667899999999987
No 257
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=36.44 E-value=9.5 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999986
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=36.32 E-value=10 Score=32.30 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999875
No 259
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=36.13 E-value=15 Score=40.62 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999874
No 260
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=35.93 E-value=16 Score=42.11 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=18.5
Q ss_pred HHHhccCCceeEEecCCCCCCcccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
+.+.-.|...-++..|+||||||..
T Consensus 616 l~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 616 LSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHhcCCcCcEEEECCCCCCHHHH
Confidence 3334457755678899999999975
No 261
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.88 E-value=13 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=20.8
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 33 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 33 PPQTEAVKKG-------LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp HHHHHHHHTT-------TTTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCCCcHHHHH
Confidence 4566666542 234544 677889999999885
No 262
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.80 E-value=17 Score=42.17 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999874
No 263
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.69 E-value=9 Score=34.71 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-.+-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999986
No 264
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=35.52 E-value=9.2 Score=36.07 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=17.8
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999876
No 265
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=35.48 E-value=25 Score=35.91 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.0
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+..|.+|+|||+|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346677799999999998
No 266
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.29 E-value=14 Score=37.81 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=12.6
Q ss_pred eEEecCCCCCCcccc
Q 043730 132 TVMAYGQTGTGKTFT 146 (480)
Q Consensus 132 ti~aYGqtgSGKTyT 146 (480)
-++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 356778999999998
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=35.08 E-value=9.8 Score=36.97 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=15.0
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|++|+|||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999998
No 268
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=34.96 E-value=15 Score=40.77 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999884
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=34.83 E-value=24 Score=36.12 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.9
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+..|.+|+|||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 457888999999999998
No 270
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.70 E-value=14 Score=42.16 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=17.2
Q ss_pred hHHHhccCCceeEEecCCCCCCccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTF 145 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTy 145 (480)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445567866 5778899999995
No 271
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=34.59 E-value=15 Score=39.36 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=19.0
Q ss_pred HHHhccCCceeEEecCCCCCCccccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..+++|.+. +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5666788775 67789999999983
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=34.46 E-value=11 Score=36.08 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999987
No 273
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=34.33 E-value=15 Score=38.53 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 106 ESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 106 ~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+...|.++-+.+ .+.+.+|.++ ++-.+||||||.+.
T Consensus 4 ~r~~Q~~~~~~v----~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 4 LRDWQEKLKDKV----IEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp CCHHHHHHHHHH----HHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHH----HHHHHcCCcE--EEECCCCccHHHHH
Confidence 344566655543 4455578665 45568999999874
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=34.30 E-value=11 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999876
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=34.21 E-value=11 Score=33.09 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999875
No 276
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=34.12 E-value=17 Score=40.27 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.4
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999874
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.90 E-value=12 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999875
No 278
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.70 E-value=9.7 Score=41.34 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred CChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 108 ASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 108 ~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 26 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 26 PPQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 3466666542 234554 678899999999764
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.69 E-value=11 Score=32.71 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999875
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=33.63 E-value=11 Score=32.70 Aligned_cols=16 Identities=38% Similarity=0.437 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|+.|||||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5566799999999987
No 281
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=33.55 E-value=17 Score=40.05 Aligned_cols=21 Identities=33% Similarity=0.590 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999874
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=33.42 E-value=10 Score=33.10 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999975
No 283
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=33.37 E-value=24 Score=35.10 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|.-..|+-+|..|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576667888999999999986
No 284
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=33.32 E-value=10 Score=40.28 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.7
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-++..|.||||||+.+
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 45788899999999987
No 285
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=33.22 E-value=12 Score=37.13 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.7
Q ss_pred hccCCceeEEecCCCCCCccccc
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..|++..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 46799999999999999999876
No 286
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.12 E-value=17 Score=41.32 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999874
No 287
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=33.09 E-value=16 Score=41.63 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.5
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999874
No 288
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=32.91 E-value=11 Score=34.11 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=15.0
Q ss_pred HHHhccCCceeEEecCCCCCCcc-ccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKT-FTL 147 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKT-yTm 147 (480)
|.......--..|-||+.||||| +.|
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHH
Confidence 33333344457899999999999 443
No 289
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.88 E-value=12 Score=32.01 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999875
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=32.88 E-value=11 Score=34.68 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999986
No 291
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=32.56 E-value=19 Score=37.68 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 105 TESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 105 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..-|.++-..+ ...+.+|.++ +.-.+||+|||.+.
T Consensus 7 ~~r~~Q~~~~~~v----~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 7 QLRQWQAEKLGEA----INALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp --CCHHHHHHHHH----HHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHH----HHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 4456677766554 3445577765 44568999999864
No 292
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=32.52 E-value=14 Score=33.84 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=17.1
Q ss_pred ccCCceeEEecCCCCCCccccc
Q 043730 126 LDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 126 l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++-+...|+-.|+||+|||...
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHH
T ss_pred EEECCEEEEEECCCCCCHHHHH
Confidence 3445566888999999999775
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=32.48 E-value=13 Score=32.05 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=10.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999875
No 294
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=32.39 E-value=12 Score=40.73 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.5
Q ss_pred HhccCCceeEEecCCCCCCccccc
Q 043730 124 SVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 124 ~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..++|.+ ++..|+||||||+.+
T Consensus 151 r~l~rk~--vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 151 RAMQRKI--IFHSGPTNSGKTYHA 172 (677)
T ss_dssp HTSCCEE--EEEECCTTSSHHHHH
T ss_pred HhcCCCE--EEEEcCCCCCHHHHH
Confidence 3456654 678899999999853
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=32.15 E-value=12 Score=33.24 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|..|||||+.+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999986
No 296
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=31.90 E-value=12 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456799999999998
No 297
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=31.90 E-value=12 Score=34.64 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..|
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455799999999886
No 298
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=31.88 E-value=14 Score=35.77 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=22.8
Q ss_pred hhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++.| + ...+.-||++|+|||..+
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 44667888853 3 346788999999999876
No 299
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=31.77 E-value=16 Score=35.30 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=23.3
Q ss_pred hhhhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+ ...+.-||.+|+|||..+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 4567888885 43 346889999999999876
No 300
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=31.76 E-value=12 Score=33.77 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
..+-||..|||||..+
T Consensus 10 i~v~~G~mgsGKTT~l 25 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEEL 25 (191)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5688999999999886
No 301
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=31.69 E-value=16 Score=39.10 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
|.+...|.++-+.+.+ .+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v~~----~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLRS----SLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHHH----HHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HHHcCCC--EEEECCCCCCHHHHH
Confidence 5556677777766533 3346766 566779999999773
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=31.62 E-value=14 Score=32.42 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.1
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344556888899999999875
No 303
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.43 E-value=14 Score=41.94 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=22.7
Q ss_pred CCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCcccc
Q 043730 104 FTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 104 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
|.+..-|.+.+.. ++.|.+ ++..++||||||..
T Consensus 85 f~L~~~Q~eai~~--------l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 85 FTLDPFQDTAISC--------IDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp SCCCHHHHHHHHH--------HHHTCE--EEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHH--------HHcCCC--EEEECCCCCChHHH
Confidence 3455566665543 455665 67788999999986
No 304
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=31.30 E-value=20 Score=34.82 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=22.6
Q ss_pred hHHHHhhhhhhhHHHhccCC-ceeEEecCCCCCCccccc
Q 043730 110 QKRVYEVVAKPVVESVLDGY-NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 110 Q~~vf~~~~~plv~~~l~G~-n~ti~aYGqtgSGKTyTm 147 (480)
|+++++.. ...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~l----~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKL----VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHH----HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHH----HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 45555543 33333453 446888999999999985
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.27 E-value=13 Score=32.04 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3677899999999874
No 306
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=31.27 E-value=16 Score=36.08 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.6
Q ss_pred hhhhHHHhccC-C--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLDG-Y--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~G-~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++.| + ...+.-+|++|||||..+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44567888764 2 446788999999999986
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=31.20 E-value=13 Score=32.26 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+.-
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3777899999999873
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.81 E-value=14 Score=32.80 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=14.5
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999875
No 309
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=30.76 E-value=20 Score=35.88 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..+.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36777999999999987
No 310
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.72 E-value=13 Score=39.20 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 336788999999999985
No 311
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.61 E-value=20 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.5
Q ss_pred hHHHhccCCceeEEecCCCCCCcccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
.+..+++|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 3555677876 57888999999984
No 312
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=30.53 E-value=16 Score=33.05 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=20.1
Q ss_pred hhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 120 PVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+|.++. |+ ...+.-+|.+|+|||..+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 44566675 44 346778999999999764
No 313
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=30.41 E-value=21 Score=40.80 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred cCCceeEEecCCCCCCccccc
Q 043730 127 DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 127 ~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 699999999999999999874
No 314
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=30.38 E-value=13 Score=40.99 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=12.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++..|+||||||..+
T Consensus 111 ~vii~gpTGSGKTtll 126 (773)
T 2xau_A 111 IMVFVGETGSGKTTQI 126 (773)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3567799999999954
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=30.37 E-value=12 Score=32.37 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999876
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=30.32 E-value=14 Score=31.38 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999999874
No 317
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=30.20 E-value=12 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999987
No 318
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.02 E-value=13 Score=39.05 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34677899999999987
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=29.97 E-value=16 Score=36.01 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=22.4
Q ss_pred hhhhHHHhcc--CC--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+ ...+.-||+.|||||..+
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 4456777776 44 345788999999999985
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.63 E-value=14 Score=32.62 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556789999999887
No 321
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.52 E-value=1.5e+02 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 408 SLSRRLEIQLDKLIVENERQQKAFD 432 (480)
Q Consensus 408 ~~~~~l~~~~~~l~~e~~~~~~~~~ 432 (480)
..+..++.++..++.+.++|.+.++
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq 31 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVG 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655553
No 322
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.49 E-value=2.2e+02 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043730 442 AQNRISEVERNFADALE 458 (480)
Q Consensus 442 ~q~~~~~~~~~~~~~~e 458 (480)
+|.++.++++++++...
T Consensus 87 lq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 87 LETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 323
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.27 E-value=11 Score=40.91 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 107 SASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 107 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3456666654 345665 567789999999874
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=29.24 E-value=18 Score=31.47 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=14.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45777899999999986
No 325
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.12 E-value=1.1e+02 Score=19.23 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 043730 430 AFDDEVERIHL 440 (480)
Q Consensus 430 ~~~~e~~~~~~ 440 (480)
.+++|+.+++.
T Consensus 18 ~Le~EV~RLk~ 28 (33)
T 3c3g_A 18 HXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556665543
No 326
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=29.09 E-value=16 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|+-.|+||||||..-
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36788999999999864
No 327
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=28.74 E-value=17 Score=41.74 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHhccCCceeEEecCCCCCCcccc
Q 043730 122 VESVLDGYNGTVMAYGQTGTGKTFT 146 (480)
Q Consensus 122 v~~~l~G~n~ti~aYGqtgSGKTyT 146 (480)
|..++.|.+ ++..|+||||||..
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 444567765 57889999999976
No 328
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.73 E-value=1.6e+02 Score=26.02 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 043730 416 QLDKLIVENERQQK 429 (480)
Q Consensus 416 ~~~~l~~e~~~~~~ 429 (480)
+++++.++...+..
T Consensus 75 ql~~I~~e~r~~~~ 88 (175)
T 3lay_A 75 TAQKIYDDYYTQTS 88 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444333333
No 329
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=28.71 E-value=13 Score=41.23 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred ceeecccCCCCCChHHHHhhhhhhhHH-Hhcc--C--CceeEEecCCCCCCccccc
Q 043730 97 TYEFDEVFTESASQKRVYEVVAKPVVE-SVLD--G--YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 97 ~f~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~aYGqtgSGKTyTm 147 (480)
...|+.+.+.+.-.+.+.+.+..|+.. ..+. | ....++-||++|+|||+..
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHH
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHH
Confidence 456777777665555555544333211 0111 1 2345889999999999985
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.62 E-value=15 Score=32.37 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999999875
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=28.60 E-value=16 Score=34.12 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35788999999999975
No 332
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=28.59 E-value=16 Score=32.85 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3456799999999987
No 333
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=28.45 E-value=14 Score=40.38 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.1
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
++.++..|..|||||++|
T Consensus 24 ~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEEcCCCCHHHHH
Confidence 456677789999999998
No 334
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=28.44 E-value=20 Score=38.14 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=25.4
Q ss_pred eecccCCCCCChHHHHhhhhhhhHHHhccCCceeEEecCCCCCCccccc
Q 043730 99 EFDEVFTESASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 99 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
.|+.+++. ..+.+ .+-..+-.|. .++-+|++|+|||+.+
T Consensus 39 ~l~~i~G~----~~~l~----~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 39 LIDQVIGQ----EHAVE----VIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHCCSC----HHHHH----HHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred ccceEECc----hhhHh----hccccccCCC--EEEEEeCCCCCHHHHH
Confidence 46777763 44443 2333444563 6677999999999987
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=28.36 E-value=14 Score=32.38 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999875
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=28.27 E-value=16 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999874
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.15 E-value=16 Score=32.65 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999875
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=28.15 E-value=16 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.9
Q ss_pred eEEecCCCCCCcccc
Q 043730 132 TVMAYGQTGTGKTFT 146 (480)
Q Consensus 132 ti~aYGqtgSGKTyT 146 (480)
.||-.|+.||||++-
T Consensus 31 iI~llGpPGsGKgTq 45 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEECCTTCCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999875
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.03 E-value=15 Score=35.75 Aligned_cols=16 Identities=50% Similarity=0.663 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 340
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.93 E-value=17 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.0
Q ss_pred hHHHhccCCc--eeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
.++.+.-|+. ..+.-.|++|+|||..+
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 4555554443 25677899999999987
No 341
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=27.87 E-value=21 Score=38.68 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++..|+||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 3577899999999765
No 342
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=27.70 E-value=16 Score=33.10 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.1
Q ss_pred EEecCCCCCCcccc
Q 043730 133 VMAYGQTGTGKTFT 146 (480)
Q Consensus 133 i~aYGqtgSGKTyT 146 (480)
|+-.|+.||||++-
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999874
No 343
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=27.63 E-value=16 Score=33.11 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4555799999999987
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=27.59 E-value=15 Score=31.82 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.0
Q ss_pred CceeEEecCCCCCCccccc
Q 043730 129 YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 129 ~n~ti~aYGqtgSGKTyTm 147 (480)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457899999999999887
No 345
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.52 E-value=1.2e+02 Score=19.16 Aligned_cols=11 Identities=27% Similarity=0.426 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 043730 430 AFDDEVERIHL 440 (480)
Q Consensus 430 ~~~~e~~~~~~ 440 (480)
.+++|+.+++.
T Consensus 19 ~Le~EV~RLk~ 29 (34)
T 3c3f_A 19 HXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556665543
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=27.41 E-value=18 Score=35.74 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|+||||||..-
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6888999999999864
No 347
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.17 E-value=2.5e+02 Score=22.80 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 411 RRLEIQLDKLIVENERQQK---AF---DDEVERIHLEAQNRISEVERNFADALEK 459 (480)
Q Consensus 411 ~~l~~~~~~l~~e~~~~~~---~~---~~e~~~~~~~~q~~~~~~~~~~~~~~e~ 459 (480)
..|+.++..|+...+.... .+ ++.+++-......-++.++..+..++|+
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455555555554433222 22 2222222222233455666666666553
No 348
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=27.16 E-value=17 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.2
Q ss_pred hhHHHhccCCceeEEecCCCCCCccccc
Q 043730 120 PVVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++.+.++.-...-|...|.+|+|||..+
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 3444555555667889999999999887
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.16 E-value=15 Score=33.34 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999875
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.08 E-value=17 Score=32.24 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|..|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999986
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.02 E-value=15 Score=31.77 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999975
No 352
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=26.91 E-value=16 Score=32.69 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.3
Q ss_pred EEecCCCCCCcccc
Q 043730 133 VMAYGQTGTGKTFT 146 (480)
Q Consensus 133 i~aYGqtgSGKTyT 146 (480)
++.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68899999999965
No 353
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=26.85 E-value=20 Score=34.56 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=19.6
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+...+-.|..-.++-||+.|+|||.+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 333334566557888999999999886
No 354
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=26.79 E-value=17 Score=35.33 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.0
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|--.|++|||||+++
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 35556799999999998
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.67 E-value=17 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999875
No 356
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=26.63 E-value=14 Score=30.57 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999886
No 357
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=26.53 E-value=17 Score=37.29 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.7
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999999974
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=26.48 E-value=22 Score=31.42 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.0
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
.....|+-.|..|||||+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34446888999999999975
No 359
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.45 E-value=18 Score=33.07 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999874
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=26.37 E-value=16 Score=31.90 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.8
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999975
No 361
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=25.87 E-value=20 Score=35.00 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.0
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|+-.|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35777899999999875
No 362
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=25.82 E-value=17 Score=30.14 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999877
No 363
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=25.82 E-value=18 Score=33.68 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 364
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.80 E-value=19 Score=31.52 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 567899999999876
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=25.76 E-value=23 Score=36.18 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.8
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|...|.+|+|||++.
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36777899999999997
No 366
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=25.73 E-value=18 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
++.-+|++|||||+.+
T Consensus 128 ~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLC 143 (305)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 367
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=25.62 E-value=16 Score=33.45 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.8
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||..+
T Consensus 34 ~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 34 SIIGASGSGKSTLL 47 (224)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44599999999886
No 368
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.62 E-value=19 Score=31.16 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999875
No 369
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.49 E-value=19 Score=30.69 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+.-
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999874
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=25.47 E-value=19 Score=35.64 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-+|++|||||..+
T Consensus 27 ~i~G~NGaGKTTll 40 (365)
T 3qf7_A 27 VVEGPNGAGKSSLF 40 (365)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35899999999776
No 371
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=25.19 E-value=31 Score=33.12 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.1
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
-.|--.|++|||||+++
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45566799999999997
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.12 E-value=17 Score=33.14 Aligned_cols=14 Identities=43% Similarity=0.453 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|+.|||||..|
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999987
No 373
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.10 E-value=19 Score=33.78 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..|
T Consensus 36 ~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=25.07 E-value=19 Score=33.34 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..+
T Consensus 34 ~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999987
No 375
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=24.94 E-value=22 Score=34.96 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.++-||++|+|||+..
T Consensus 125 viLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEECSCSSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4577999999999986
No 376
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.88 E-value=19 Score=33.34 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.+
T Consensus 35 ~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 35 VTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.68 E-value=20 Score=31.56 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999986
No 378
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.67 E-value=19 Score=34.27 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||+.+
T Consensus 38 ~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 38 AILGGNGVGKSTLF 51 (275)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999987
No 379
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.67 E-value=22 Score=35.27 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=22.5
Q ss_pred hhhhHHHhcc--CCc--eeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD--GYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~--G~n--~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+. ..+.-||++|+|||+.+
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 4456777776 443 46788999999999876
No 380
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=24.65 E-value=20 Score=31.63 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=13.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3456799999999887
No 381
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=24.59 E-value=21 Score=35.01 Aligned_cols=16 Identities=44% Similarity=0.383 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4667899999999875
No 382
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=24.57 E-value=18 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=13.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|..|||||+..
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 667899999999875
No 383
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=24.50 E-value=18 Score=32.29 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.1
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|++|+|||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999887
No 384
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=24.50 E-value=17 Score=34.13 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHhccCCc--eeEEecCCCCCCccccc
Q 043730 123 ESVLDGYN--GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 123 ~~~l~G~n--~ti~aYGqtgSGKTyTm 147 (480)
+.++.|+. ..+.-+|++|||||..+
T Consensus 21 d~~lggl~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 21 DYVLPNMVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp CEEETTEETTSEEEEEESTTSSHHHHH
T ss_pred heeECCccCCCEEEEEcCCCCCHHHHH
Confidence 44444442 35677899999999986
No 385
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.38 E-value=4.1e+02 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043730 410 SRRLEIQLDKLIVENER 426 (480)
Q Consensus 410 ~~~l~~~~~~l~~e~~~ 426 (480)
++.|+.++++|+.++++
T Consensus 986 v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 386
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.35 E-value=2.6e+02 Score=24.21 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 043730 407 KSLSRRLEIQLDKLIVENERQQKAFDDEVERIHLEAQNRI----SEVERNFAD 455 (480)
Q Consensus 407 ~~~~~~l~~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~----~~~~~~~~~ 455 (480)
..+..++..+.+.|+.++......+...+.-...+++.++ +++...+.-
T Consensus 87 ~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P 139 (165)
T 1gs9_A 87 EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLAS 139 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655555555555544444443 355544443
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.25 E-value=20 Score=33.82 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.|
T Consensus 36 ~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999987
No 388
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.24 E-value=20 Score=33.78 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.9
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||..+
T Consensus 36 ~liG~nGsGKSTLl 49 (262)
T 1b0u_A 36 SIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999987
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=24.03 E-value=19 Score=29.96 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.9
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
..-|+..|.+|+|||..+
T Consensus 5 ~~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 345788899999999877
No 390
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.02 E-value=3.6e+02 Score=23.54 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043730 457 LEKEKLKCQMEYMESVKKLEER 478 (480)
Q Consensus 457 ~e~~~~~~~~~~~~~~~~l~e~ 478 (480)
+|+++.-.+++..-++|.|..|
T Consensus 130 lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 130 SEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444444455555444
No 391
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=23.90 E-value=20 Score=33.35 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..|
T Consensus 38 ~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999986
No 392
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=23.72 E-value=21 Score=33.60 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||..|
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 393
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.56 E-value=2e+02 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 412 RLEIQLDKLIVENERQQKAFDDEV 435 (480)
Q Consensus 412 ~l~~~~~~l~~e~~~~~~~~~~e~ 435 (480)
.|..++..|++|+.+..+.+++|.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788887777777776663
No 394
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=23.51 E-value=21 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 395
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.48 E-value=19 Score=32.38 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999875
No 396
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=23.41 E-value=24 Score=37.54 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.5
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-+|++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 5888999999999987
No 397
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=23.35 E-value=21 Score=33.71 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..+
T Consensus 53 ~~liG~NGsGKSTLl 67 (263)
T 2olj_A 53 VVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 345699999999987
No 398
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.24 E-value=23 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|.+|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999976
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=23.12 E-value=23 Score=30.51 Aligned_cols=16 Identities=44% Similarity=0.491 Sum_probs=13.2
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.-.|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.11 E-value=22 Score=33.62 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
--.|++|||||..+
T Consensus 41 ~liG~nGsGKSTLl 54 (266)
T 4g1u_C 41 AIIGPNGAGKSTLL 54 (266)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999987
No 401
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=23.02 E-value=29 Score=34.30 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=21.8
Q ss_pred hhhhHHHhcc--CC--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD--GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~--G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+ ...++.||..|+|||...
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 3455677775 43 335788899999999986
No 402
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.99 E-value=3.2e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 412 RLEIQLDKLIVENERQQKAFDDEVERI 438 (480)
Q Consensus 412 ~l~~~~~~l~~e~~~~~~~~~~e~~~~ 438 (480)
.|..+++.++.|..+-+..|..-+..|
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~L 52 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSEL 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.86 E-value=22 Score=33.43 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.|
T Consensus 44 ~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999987
No 404
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=22.83 E-value=36 Score=32.15 Aligned_cols=28 Identities=0% Similarity=-0.026 Sum_probs=18.3
Q ss_pred hhhHHHhccC---CceeEEecCCCCCCccccc
Q 043730 119 KPVVESVLDG---YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 119 ~plv~~~l~G---~n~ti~aYGqtgSGKTyTm 147 (480)
-|-++.++.| -..+++..|.+|+||| |+
T Consensus 7 i~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 7 IEELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp SHHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred cHHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 3456777765 3455566677777877 65
No 405
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=22.81 E-value=22 Score=32.65 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||..|
T Consensus 38 ~i~G~nGsGKSTLl 51 (229)
T 2pze_A 38 AVAGSTGAGKTSLL 51 (229)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 45699999999987
No 406
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=22.62 E-value=22 Score=35.31 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=12.1
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
--.|++|||||.+|
T Consensus 33 ~llGpnGsGKSTLL 46 (359)
T 2yyz_A 33 ALLGPSGCGKTTTL 46 (359)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEcCCCchHHHHH
Confidence 44699999999987
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.40 E-value=24 Score=30.71 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999886
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.37 E-value=21 Score=31.97 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=12.8
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999864
No 409
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=22.35 E-value=21 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.5
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
+..++.-|..|||||++|
T Consensus 23 ~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp SSCEEEEECTTCCHHHHH
T ss_pred CCCEEEEecCCCcHHHHH
Confidence 556788889999999997
No 410
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.32 E-value=25 Score=31.07 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.7
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
+....|+..|.+|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 44567889999999999887
No 411
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=22.29 E-value=26 Score=29.98 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.2
Q ss_pred CCceeEEecCCCCCCccccc
Q 043730 128 GYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 128 G~n~ti~aYGqtgSGKTyTm 147 (480)
.....|...|.+|+|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 44567888999999999987
No 412
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=22.27 E-value=25 Score=30.74 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.9
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|.-.|..|+|||..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEEESSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 345778899999999887
No 413
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=22.27 E-value=22 Score=33.23 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..|
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 414
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=22.20 E-value=23 Score=35.16 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||.+|
T Consensus 45 ~llGpnGsGKSTLL 58 (355)
T 1z47_A 45 GLLGPSGSGKTTIL 58 (355)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999987
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=22.15 E-value=23 Score=35.57 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=12.2
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
--.|++|||||.+|
T Consensus 33 ~llGpsGsGKSTLL 46 (381)
T 3rlf_A 33 VFVGPSGCGKSTLL 46 (381)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCchHHHHH
Confidence 45799999999987
No 416
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=22.14 E-value=23 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=12.7
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.|
T Consensus 49 ~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999987
No 417
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=22.13 E-value=19 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=17.0
Q ss_pred hHHHhccCCceeEEecCCCCCCccccc
Q 043730 121 VVESVLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+|..+-.|. .|.-.|.+|||||+..
T Consensus 14 ~~~~~~~~~--~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 14 LVPRGSKTF--IIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCCSCCCE--EEEEEESTTSSHHHHH
T ss_pred ccccCCCCe--EEEEECCCCCCHHHHH
Confidence 444444453 4556799999999876
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=22.11 E-value=23 Score=31.58 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.1
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|+-.|..|||||+.+
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999999886
No 419
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.06 E-value=23 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|--.|+.|||||+.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 420
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.05 E-value=23 Score=33.72 Aligned_cols=14 Identities=50% Similarity=0.824 Sum_probs=12.0
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||+.|
T Consensus 51 ~liG~NGsGKSTLl 64 (279)
T 2ihy_A 51 ILYGLNGAGKTTLL 64 (279)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 44699999999987
No 421
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=22.00 E-value=23 Score=32.94 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||+.+
T Consensus 32 ~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 32 HALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999987
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=21.96 E-value=25 Score=33.14 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|.+|||||+..
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=21.87 E-value=24 Score=33.44 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||..|
T Consensus 48 ~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 48 TALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999986
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=21.86 E-value=43 Score=32.81 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=21.4
Q ss_pred hhhhHHHhc--cCCceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVL--DGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l--~G~n~ti~aYGqtgSGKTyTm 147 (480)
+..++..+. .+....|...|..|+|||.++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 344555554 455556777999999999987
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=21.86 E-value=24 Score=33.05 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.6
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|+.|||||+.|
T Consensus 29 ~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 445799999999987
No 426
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=21.86 E-value=25 Score=34.80 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
..+-+|.||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999887
No 427
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=21.86 E-value=31 Score=33.08 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.0
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
++.-.|++|+|||..+
T Consensus 167 i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 167 ICILAGPSGVGKSSIL 182 (302)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455699999999987
No 428
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=21.82 E-value=24 Score=32.51 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.8
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+-.|..|||||+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346888999999999864
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=21.80 E-value=24 Score=35.28 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=12.1
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-.|++|||||.+|
T Consensus 33 ~llGpnGsGKSTLL 46 (372)
T 1g29_1 33 ILLGPSGCGKTTTL 46 (372)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCcHHHHHH
Confidence 45699999999987
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.72 E-value=22 Score=32.02 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.4
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999874
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=21.70 E-value=24 Score=35.16 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||.+|
T Consensus 32 ~~llGpnGsGKSTLL 46 (362)
T 2it1_A 32 MALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345699999999987
No 432
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=21.69 E-value=21 Score=35.49 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=12.5
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+--.|++|||||.+|
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345799999999986
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=21.66 E-value=25 Score=31.82 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999875
No 434
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.65 E-value=1.6e+02 Score=18.84 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043730 412 RLEIQLDKLIVENERQQKAFDDEVERIHL 440 (480)
Q Consensus 412 ~l~~~~~~l~~e~~~~~~~~~~e~~~~~~ 440 (480)
+|+..++.|..+ ...|++|+.+++.
T Consensus 5 QLE~kVEeLl~~----~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESE----VWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hHHHHHHHHHHHH
Confidence 344444444333 3345556665543
No 435
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.62 E-value=24 Score=33.31 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.3
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.+.-.|++|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456699999999987
No 436
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.44 E-value=23 Score=29.91 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.2
Q ss_pred ceeEEecCCCCCCccccc
Q 043730 130 NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 130 n~ti~aYGqtgSGKTyTm 147 (480)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 356788899999999877
No 437
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.40 E-value=27 Score=34.04 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=12.5
Q ss_pred EecCCCCCCccccc
Q 043730 134 MAYGQTGTGKTFTL 147 (480)
Q Consensus 134 ~aYGqtgSGKTyTm 147 (480)
.-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 27 LIIGQNGSGKSSLL 40 (339)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46799999999987
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=21.31 E-value=27 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.6
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|+||||||..-
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5778899999999864
No 439
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=21.28 E-value=39 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|.--|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999997
No 440
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=21.23 E-value=24 Score=29.24 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.7
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-|...|.+|+|||..+
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999876
No 441
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=21.17 E-value=26 Score=34.73 Aligned_cols=16 Identities=44% Similarity=0.655 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
...-+|++|||||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 5567899999999998
No 442
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.00 E-value=32 Score=33.22 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.9
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
..-+|++|||||..|
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 446799999999987
No 443
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=20.98 E-value=24 Score=29.41 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.2
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-|...|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34778899999999876
No 444
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.98 E-value=24 Score=29.32 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.9
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999887
No 445
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=20.93 E-value=27 Score=31.25 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.1
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|.-.|..|||||+..
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999875
No 446
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=20.92 E-value=30 Score=30.34 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.0
Q ss_pred hHHHh-ccCCceeEEecCCCCCCccccc
Q 043730 121 VVESV-LDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 121 lv~~~-l~G~n~ti~aYGqtgSGKTyTm 147 (480)
+++.+ +.-...-|...|..|+|||..+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 34443 3333456788899999999987
No 447
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.85 E-value=30 Score=34.84 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.9
Q ss_pred hhhhHHHhcc-CC--ceeEEecCCCCCCccccc
Q 043730 118 AKPVVESVLD-GY--NGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 118 ~~plv~~~l~-G~--n~ti~aYGqtgSGKTyTm 147 (480)
+-+-++.++. |+ ...+.-+|++|||||..+
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 4466888884 44 346788999999999886
No 448
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.82 E-value=4e+02 Score=26.40 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh
Q 043730 415 IQLDKLIVENERQQKAFDDEVERIHLEAQNRISEVERNFADALEKEKLKCQM--EYMESVKKLEERC 479 (480)
Q Consensus 415 ~~~~~l~~e~~~~~~~~~~e~~~~~~~~q~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~l~e~~ 479 (480)
.++..+.++...+.+..++.+.....+++.+++.+++....++.+.+.-+.. +..-++++||..|
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666777777888889999999999998888755433332 5566788898876
No 449
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=20.81 E-value=36 Score=29.15 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.3
Q ss_pred hccCCceeEEecCCCCCCccccc
Q 043730 125 VLDGYNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 125 ~l~G~n~ti~aYGqtgSGKTyTm 147 (480)
++......|...|.+|+|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45666778899999999999887
No 450
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=20.80 E-value=25 Score=35.08 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=12.4
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
+.-.|++|||||.+|
T Consensus 40 ~~llGpnGsGKSTLL 54 (372)
T 1v43_A 40 LVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 345699999999987
No 451
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=20.79 E-value=24 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.3
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-|...|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778899999999887
No 452
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.65 E-value=25 Score=29.65 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.4
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
..|...|.+|+|||..+
T Consensus 9 ~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999887
No 453
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=20.47 E-value=22 Score=39.30 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=34.8
Q ss_pred eeEEecCCCCCCcccccc------cCC-------CCCCCCcchhHHHHHHHHhhcCCCCccEEEEEEeEeechhcccCC
Q 043730 131 GTVMAYGQTGTGKTFTLG------RLG-------DEDTSSRGIMVRSMEDILADVSLESDSVSVSYLQLYMETIQDLLD 196 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm~------g~~-------~~~~~~~Gii~r~~~~lf~~~~~~~~~V~vS~~EIynE~v~DLL~ 196 (480)
..|+-||+.|+|||+.-- |.. .--....|--.+.+..+|.........| ||-+.+--|+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~I------ifiDEiDsl~~ 584 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV------LFFDELDSIAK 584 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEE------EECSCGGGCC-
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCce------eechhhhHHhh
Confidence 358899999999998731 100 0001122445688899998775543322 45566655553
No 454
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=20.40 E-value=36 Score=38.83 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=12.0
Q ss_pred EEecCCCCCCccccc
Q 043730 133 VMAYGQTGTGKTFTL 147 (480)
Q Consensus 133 i~aYGqtgSGKTyTm 147 (480)
.+...+||||||+||
T Consensus 303 gli~~~TGSGKT~t~ 317 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTS 317 (1038)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 344568999999997
No 455
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=20.25 E-value=31 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=19.5
Q ss_pred hhHHHhcc-C--CceeEEecCCCCCCccccc
Q 043730 120 PVVESVLD-G--YNGTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 120 plv~~~l~-G--~n~ti~aYGqtgSGKTyTm 147 (480)
+.++++.- | -..++.-.|++|||||..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 34556555 3 2345667899999999986
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=20.09 E-value=26 Score=29.57 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.6
Q ss_pred eeEEecCCCCCCccccc
Q 043730 131 GTVMAYGQTGTGKTFTL 147 (480)
Q Consensus 131 ~ti~aYGqtgSGKTyTm 147 (480)
.-|+..|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999877
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=20.08 E-value=25 Score=31.04 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.1
Q ss_pred eEEecCCCCCCccccc
Q 043730 132 TVMAYGQTGTGKTFTL 147 (480)
Q Consensus 132 ti~aYGqtgSGKTyTm 147 (480)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788899999999975
Done!