AmiGO: BLAST Results


BLAST match view associations BLAST with La1 La1 La1 AT4G32720	protein from Arabidopsis thaliana	7.3e-105
BLAST match view associations BLAST with La2 La2 La2 La protein 2	protein from Arabidopsis thaliana	8.7e-67
BLAST match view associations BLAST with DDB_G0281763 DDB_G0281763 DDB_G0281763 Lupus La protein	gene from Dictyostelium discoideum	4.4e-17
BLAST match view associations BLAST with LHP1 LHP1 LHP1 RNA binding protein required for maturation of tRNA and U6 snRNA	gene from Saccharomyces cerevisiae	1.2e-16
BLAST match view associations BLAST with orf19.2795 orf19.2795 orf19.2795	gene_product from Candida albicans	2.3e-14
BLAST match view associations BLAST with C44E4.4 C44E4.4 C44E4.4	gene from Caenorhabditis elegans	3.7e-14
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	9.8e-14
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Canis lupus familiaris	1.4e-13
BLAST match view associations BLAST with larp7 larp7 larp7 La ribonucleoprotein domain family, member 7	gene_product from Danio rerio	3.4e-13
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	4.3e-13
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	1.1e-12
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Gallus gallus	1.6e-12
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein homolog	protein from Bos taurus	1.8e-12
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Gallus gallus	2.8e-12
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Sus scrofa	5.0e-12
BLAST match view associations BLAST with F1MR14 F1MR14 F1MR14 Uncharacterized protein	protein from Bos taurus	1.9e-11
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-11
BLAST match view associations BLAST with Larp7 Larp7 Larp7 La ribonucleoprotein domain family, member 7	protein from Mus musculus	5.5e-11
BLAST match view associations BLAST with La La La La autoantigen-like	protein from Drosophila melanogaster	9.1e-11
BLAST match view associations BLAST with Larp7 Larp7 Larp7 La ribonucleoprotein domain family, member 7	gene from Rattus norvegicus	9.2e-11
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	1.1e-10
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Sus scrofa	2.6e-10
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with LOC680385 LOC680385 LOC680385 similar to Sjogren syndrome antigen B	gene from Rattus norvegicus	5.5e-10
BLAST match view associations BLAST with I3LNK9 I3LNK9 I3LNK9 Uncharacterized protein	protein from Sus scrofa	8.0e-10
BLAST match view associations BLAST with Ssb Ssb Ssb Lupus La protein homolog	protein from Rattus norvegicus	2.9e-09
BLAST match view associations BLAST with ssb ssb ssb Sjogren syndrome antigen B (autoantigen La)	gene_product from Danio rerio	2.9e-09
BLAST match view associations BLAST with Ssb Ssb Ssb Sjogren syndrome antigen B	protein from Mus musculus	3.0e-09
BLAST match view associations BLAST with LARP6a LARP6a LARP6a AT5G46250	protein from Arabidopsis thaliana	6.8e-09
BLAST match view associations BLAST with Ssb Ssb Ssb Sjogren syndrome antigen B	gene from Rattus norvegicus	7.4e-09
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	1.3e-08
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	2.7e-07
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	6.3e-07
BLAST match view associations BLAST with LARP6b LARP6b LARP6b AT2G43970	protein from Arabidopsis thaliana	8.9e-07
BLAST match view associations BLAST with DDB_G0281835 DDB_G0281835 DDB_G0281835	gene from Dictyostelium discoideum	2.5e-06
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	5.3e-06
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	1.4e-05
BLAST match view associations BLAST with CG17386 CG17386 CG17386	protein from Drosophila melanogaster	3.2e-05
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	5.0e-05
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Bos taurus	5.1e-05
BLAST match view associations BLAST with Larp6 Larp6 Larp6 La ribonucleoprotein domain family, member 6	protein from Mus musculus	6.7e-05
BLAST match view associations BLAST with Larp6 Larp6 Larp6 La ribonucleoprotein domain family, member 6	gene from Rattus norvegicus	6.7e-05
BLAST match view associations BLAST with LARP6c LARP6c LARP6c AT3G19090	protein from Arabidopsis thaliana	7.6e-05
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Sus scrofa	0.00010
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Canis lupus familiaris	0.00011
BLAST match view associations BLAST with LARP6 LARP6 LARP6 La-related protein 6	protein from Homo sapiens	0.00014
BLAST match view associations BLAST with SLF1 SLF1 SLF1 RNA binding protein that associates with polysomes	gene from Saccharomyces cerevisiae	0.00020
BLAST match view associations BLAST with larp6 larp6 larp6 La ribonucleoprotein domain family, member 6	gene_product from Danio rerio	0.00038
BLAST match view associations BLAST with LOC420093 LOC420093 LOC420093 Uncharacterized protein	protein from Gallus gallus	0.00082
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043731
        (498 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37...   742  7.3e-105  2
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37...   547  8.7e-67   2
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr...   179  4.4e-17   4
SGD|S000002209 - symbol:LHP1 "RNA binding protein require...   212  1.2e-16   1
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ...   191  2.3e-14   3
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha...   188  3.7e-14   2
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:...   138  9.8e-14   2
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s...   131  1.4e-13   2
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr...   170  3.4e-13   3
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s...   135  4.3e-13   2
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:...   138  1.1e-12   2
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"...   172  1.6e-12   2
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ...   135  1.8e-12   2
ASPGD|ASPL0000060980 - symbol:AN1045 species:162425 "Emer...   192  2.5e-12   1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"...   172  2.8e-12   1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s...   141  5.0e-12   2
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein...   167  1.9e-11   3
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"...   168  3.4e-11   2
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai...   164  5.5e-11   2
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:...   178  9.1e-11   1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f...   163  9.2e-11   2
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp...   163  9.2e-11   2
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp...   168  1.1e-10   2
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"...   166  2.6e-10   3
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ...   169  4.0e-10   1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp...   168  4.5e-10   2
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro...   123  5.5e-10   2
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein...   166  8.0e-10   3
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B...   116  2.9e-09   2
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a...   133  2.9e-09   2
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s...   115  3.0e-09   2
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a...   162  6.8e-09   1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec...   116  7.4e-09   2
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:...   138  1.3e-08   1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ...   106  2.9e-08   2
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp...   126  2.7e-07   1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s...   135  6.3e-07   1
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37...   146  8.9e-07   2
DICTYBASE|DDB_G0281835 - symbol:DDB_G0281835 species:4468...   140  2.5e-06   2
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp...   114  5.3e-06   1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s...   110  1.4e-05   1
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ...   133  3.2e-05   1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:...   105  5.0e-05   1
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"...   127  5.1e-05   2
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma...   127  6.7e-05   1
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f...   127  6.7e-05   1
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c...   126  7.6e-05   1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"...   127  0.00010   2
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"...   124  0.00011   1
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp...   124  0.00014   1
SGD|S000002923 - symbol:SLF1 "RNA binding protein that as...   122  0.00020   1
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr...   120  0.00038   1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot...   107  0.00082   1


>TAIR|locus:2125702 [details] [associations]
            symbol:La1 "La protein 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
            involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
            from nucleus" evidence=RCA] [GO:0006606 "protein import into
            nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
            biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
            "cotyledon development" evidence=RCA] [GO:0051301 "cell division"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
            GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
            SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
            EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
            ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
            EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
            TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
            ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
        Length = 433

 Score = 742 (266.3 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 154/295 (52%), Positives = 202/295 (68%)

Query:     4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNV 63
             L EETA+ VLRQVEFYFSDSN+P D+FL+  ++ES D +VSLALICSF +M+ +L LG+ 
Sbjct:     6 LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDS 65

Query:    64 KSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEY 123
             K +DIPEDT++AVA+TLR SS+LK+S+DG KVGRS EL   E++ EQL+ RT+AA+P  Y
Sbjct:    66 KGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSY 125

Query:   124 DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVE 183
             DVKREDVE+FFSQ+ KVNSVR+PRHVA+ R+F G AL+EF TEEDA+ V+KQ L +AG E
Sbjct:   126 DVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLVFAGQE 185

Query:   184 LHLXXXXXXXXXXXXXXXXXXXSRPAVGS-------NRKNNSNAEADYPKGLIVAFTLKN 236
             L L                    +P  GS       + KNNS  E DYPKGLI++FTLK 
Sbjct:   186 LELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIISFTLKR 245

Query:   237 KSAEGSEEKNGSLKPANDS--ENACKPDGEPDSS-DNAAAVESEQKASENDSNGE 288
              + EG+ E+  S +P + +  E+  KP   PD+  +N   V++E    E+D   E
Sbjct:   246 SAEEGTTEQKSSEEPTDKTMEESETKPADTPDADKENTGEVQAEGAEDEDDEKEE 300

 Score = 316 (116.3 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 59/97 (60%), Positives = 72/97 (74%)

Query:   324 TYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGG 383
             T+KDN DVV+REDLK+VF KFG VKF+DFK+G+E+GY+RF+EPE             EGG
Sbjct:   306 THKDNKDVVLREDLKAVFGKFGDVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGG 365

Query:   384 LSVKNFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKG 420
             L+VKNFIAVLEPV GEAEKEYW+LLR      +  +G
Sbjct:   366 LAVKNFIAVLEPVIGEAEKEYWTLLRSKDRFDKGGRG 402

 Score = 46 (21.3 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query:   397 TGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKF 449
             T +A+KE    ++       D + EEK   A +K  ++ ++ +ED +   GKF
Sbjct:   275 TPDADKENTGEVQAEGAEDEDDEKEEKGALATHKD-NKDVVLREDLKAVFGKF 326


>TAIR|locus:2017809 [details] [associations]
            symbol:La2 "La protein 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
            "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
            evidence=RCA] [GO:0048522 "positive regulation of cellular process"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
            IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
            ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
            PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
            KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
            InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
            ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
        Length = 399

 Score = 547 (197.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 123/279 (44%), Positives = 172/279 (61%)

Query:     2 ASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLG 61
             +S +EETA+ +L QVEFYFSDSN+PTD FL  ++++S D +VSL L+CSF RM+  L LG
Sbjct:     3 SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLG 62

Query:    62 NVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPL 121
             N+  EDIP   +E VA  LR S  LK+S +G ++GR  +L   EE+ EQ+  RT+AA+P 
Sbjct:    63 NINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPF 122

Query:   122 EYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAG 181
             EY +K EDV +FFSQ+ KVNSVRLP ++ADKR FCGTAL+EFS+E+D + +L+Q L YAG
Sbjct:   123 EYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLVYAG 182

Query:   182 VELHLXXXXXXXXXXXXXXXXXXXSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEG 241
              +L L                       +G +  +N     ++ +G IV F LK  ++E 
Sbjct:   183 ADLVLIPKSDFDCQRENMIKQ-------LGKSESHN-----EFRRGQIVKFALKWIASEE 230

Query:   242 ---SEEKNGSLK----PANDSENACKPDGEPDSSDNAAA 273
                ++EK  +LK       D E     D E ++ DN+ A
Sbjct:   231 KVTNKEKPSALKNKIKEKEDKETGIA-DREKENGDNSCA 268

 Score = 150 (57.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 37/106 (34%), Positives = 55/106 (51%)

Query:   327 DNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSV 386
             +N + V  E LK +F +FG+V+ I++  G +SGY+ F + E              GGL V
Sbjct:   284 NNSNSVSSEVLKDLFQRFGSVEHIEYSGGLDSGYVWFTDSETAMKARAAVEFV--GGLVV 341

Query:   387 KN-FIAVLEPVTGEAEKEYWSLL-----RGNQERHRDVKGEEKHLE 426
             KN F   LE + GE E+E W  L      G +E H+  KG+++  E
Sbjct:   342 KNNFSVALEAINGEMERELWKRLSSAELEGGKEGHKKEKGKDECFE 387


>DICTYBASE|DDB_G0281763 [details] [associations]
            symbol:DDB_G0281763 "Lupus La protein" species:44689
            "Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
            evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
            dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
            Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
            RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
            EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
            InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
            Uniprot:Q54TG6
        Length = 354

 Score = 179 (68.1 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
 Identities = 42/99 (42%), Positives = 61/99 (61%)

Query:     4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNV 63
             + EET+  +L+QVE+YFSDSN P D+FLR + +++ D  +S+ +I SF RMK        
Sbjct:     1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKT------- 53

Query:    64 KSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
                 I  D L+ + E L+KS+ L++SEDG  V R   LP
Sbjct:    54 ----ISTD-LQLITEALKKSTRLQVSEDGKMVRRLDPLP 87

 Score = 122 (48.0 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
 Identities = 39/106 (36%), Positives = 58/106 (54%)

Query:    73 LEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDV-RTIAATPLEYDVKREDVE 131
             L+ + E L+KS+ L++SEDG  V R   LP      E +D  +T+ +     D   E V+
Sbjct:    58 LQLITEALKKSTRLQVSEDGKMVRRLDPLP------ENIDCGKTLYSKGWPEDTTIEKVQ 111

Query:   132 AFFSQH--VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175
              FF+ +   KV SVRL R  +DK  F G+ L +F TEE   K++ +
Sbjct:   112 EFFNANGGYKVVSVRL-RKKSDKS-FKGSFLADFETEEIVNKIITE 155

 Score = 79 (32.9 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
 Identities = 20/73 (27%), Positives = 36/73 (49%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEG-XXXXXXXXXXXQEGGLSVKNFIAV 392
             R D+K +F ++G V+F+ +    E+G +R++  E             +E G  +  +  +
Sbjct:   243 RGDIKEIFSQYGEVQFVGYNSDEENGSVRYKTAESCKRAIESLTETKKEIGGQIPTY-NL 301

Query:   393 LEPVTGEAEKEYW 405
             LE   GE EK+ W
Sbjct:   302 LE---GEEEKKEW 311

 Score = 46 (21.3 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query:   239 AEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQ 278
             A  + +K    K   D EN    D + D+ D    VE E+
Sbjct:   185 ASTNGDKKRKAKKEADRENGDDDDNDGDNKDVKKEVEEEE 224

 Score = 38 (18.4 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query:   428 ENKAASEKMIQQEDAQIKPGKFEQ--HEKPGISSG 460
             E K   EK+I+++    K G F++   +K G   G
Sbjct:   306 EEKKEWEKIIERKKNAAKNGGFKKGGFKKGGFKKG 340


>SGD|S000002209 [details] [associations]
            symbol:LHP1 "RNA binding protein required for maturation of
            tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
            [GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
            binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
            OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
            GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
            EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
            ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
            MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
            EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
            OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
            Uniprot:P33399
        Length = 275

 Score = 212 (79.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 86/270 (31%), Positives = 123/270 (45%)

Query:     7 ETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSE 66
             E     L+QVEFYFS+ N P D FLR   +E +D  V ++ I +F RMK++         
Sbjct:    28 EVLDRCLKQVEFYFSEFNFPYDRFLR-TTAEKNDGWVPISTIATFNRMKKYR-------- 78

Query:    67 DIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSA--ELPTAEEMKEQLDVRTIAATPLEY- 123
               P D    V E LR S  L++S DG  V R    +L  A   + + + RT+A     + 
Sbjct:    79 --PVDK---VIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHE 133

Query:   124 DVK-------REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-- 174
             DV+       +E++EAFF +  ++N VRL R   +K+ F GT L+EF T  + E  LK  
Sbjct:   134 DVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNKK-FNGTVLVEFKTIPECEAFLKSY 192

Query:   175 -------QGLFYAGVELHLXXXXXXXXXXXXXXXXXXXSRPAVGSNRKNNSNAEADYPKG 227
                    + L Y G +L +                   S+   G +R  N + + + PK 
Sbjct:   193 SNDDESNEILSYEGKKLSVLTKKQFDLQREASK-----SKNFSGRSRSFNGHKKKNLPK- 246

Query:   228 LIVAFTLKNKSAEGSEE-KNGSLKPANDSE 256
                 F  KNK   G EE K  S   A+D E
Sbjct:   247 ----FP-KNKKKNGKEESKEDSSAIADDDE 271


>CGD|CAL0004304 [details] [associations]
            symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
            conjugation with cellular fusion" evidence=IEA] [GO:0034307
            "regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
            3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
            ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
            KEGG:cal:CaO19.2795 Uniprot:Q59PU8
        Length = 324

 Score = 191 (72.3 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
 Identities = 62/176 (35%), Positives = 89/176 (50%)

Query:     6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKS 65
             E+  + V +QVEFYFSDSN+ TD+FL  KI ES+D  V L  I +F RM+++        
Sbjct:     9 EDFDEKVRKQVEFYFSDSNLQTDKFL-WKIYESNDGWVELKTILTFGRMRQYR------- 60

Query:    66 EDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDV 125
                PED    V   L++S  L LS +   + R   +    E+K      TI       D+
Sbjct:    61 ---PEDK---VISALKESKKLVLSANNDMIRRKDPIKDFNEVKNTRKRNTIHIEGFPKDL 114

Query:   126 KREDVEAFFSQHV--------KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173
              ++DVE + ++ V        +V S+R  +  A K  F G   IEF T+EDAE +L
Sbjct:   115 SQDDVENWVNEKVIVQLPKEKEVCSIRRIKSRAKKEFF-GVVDIEFKTQEDAEFIL 169

 Score = 45 (20.9 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
 Identities = 22/88 (25%), Positives = 39/88 (44%)

Query:   218 SNAEADYPKGLIVAFTLKNKSAEGSEEKN----GSLKPANDSENACKPDGEPD-----SS 268
             +N E  YP+G+I       + A+  E+K+     +L    +   + K  G  +     +S
Sbjct:   170 NNVELSYPEGII-----SKEDAQSLEKKDLLKKMTLLTFQEMRESSKRFGVNEVTKRRNS 224

Query:   269 DNAAAVESEQKASENDSNGEGKVEEKNE 296
              N       +K  + ++NG+GK   KNE
Sbjct:   225 FNENHKGGNKKFKKGNNNGKGK-NNKNE 251

 Score = 41 (19.5 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query:   410 GNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSG 460
             GN    ++ K E+       K  +E++  +E A     K E  E P  ++G
Sbjct:   255 GNGTEDKETKLEKVEEIDSTKENTEEVAAKETAPESTEKTETKEAPAPATG 305

 Score = 41 (19.5 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query:   235 KNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESE-QKASENDSNGEGKVE 292
             +N   E  +  N   K  N++        E D+ +     E++ +K  E DS  E   E
Sbjct:   222 RNSFNENHKGGNKKFKKGNNNGKGKNNKNENDNGNGTEDKETKLEKVEEIDSTKENTEE 280


>WB|WBGene00016653 [details] [associations]
            symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
            regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0040027 "negative regulation of
            vulval development" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
            GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
            InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
            PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
            STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
            KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
            HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
            Uniprot:O01806
        Length = 396

 Score = 188 (71.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 64/243 (26%), Positives = 111/243 (45%)

Query:     2 ASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLG 61
             A++ ++  Q +++Q+E+YF + N+P D+FL+ K+ E  D  V +  + +F R+       
Sbjct:     6 AAVHDDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLAS----- 59

Query:    62 NVKSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTI 116
                   I +DT E +A  ++ S S  + +SED  K+ R+ E P  E   E  +++  RT+
Sbjct:    60 ------ISKDT-EKIANAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTV 112

Query:   117 AATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQG 176
                    D + +D+  + +Q  +  +V + R     R F G+  I + T E+AE   K  
Sbjct:   113 YMKGFSTDTQLDDIIQWANQFGETENVLMRRLKPGDRTFKGSVFITYKTREEAEAAQKAE 172

Query:   177 LFYAGVELHLXXXXXXXXXXXXXXXXXXXSRPAVGSNRKNNSNA-EAD-------YPKGL 228
             + +   EL                     +  A  S  KN S A E++       Y KGL
Sbjct:   173 VKFGETELTKMMQDEYWTLKNKETKEARAANKAAKS-AKNTSEAIESEKAQHAVRYEKGL 231

Query:   229 IVA 231
             I+A
Sbjct:   232 ILA 234

 Score = 62 (26.9 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 19/84 (22%), Positives = 38/84 (45%)

Query:   335 EDLKSVFHKFGTVKFIDFKIGAESGYIRFE-EPEGXXXX-XXXXXXXQEGGLSVKNFIAV 392
             + +K+ F   G+V ++  + G ++  IRF  + EG             +G + ++     
Sbjct:   245 DSIKTFFKLHGSVGYVAHENGGKTAEIRFNNDSEGAQKAWDNAVAAGTDGKVILQEAELS 304

Query:   393 LEPVTGEAEKEYWSLL--RGNQER 414
                + GE E++YW+    R NQ +
Sbjct:   305 ARVLDGEEEEKYWTEFNARKNQRQ 328


>UNIPROTKB|P05455 [details] [associations]
            symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
            "mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
            evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
            Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
            HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
            EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
            EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
            RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
            PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
            PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
            PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
            ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
            MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
            PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
            Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
            KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
            HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
            neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
            OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
            GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
            Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
            GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
        Length = 408

 Score = 138 (53.6 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
 Identities = 47/188 (25%), Positives = 93/188 (49%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176
                   D   +D++ +     +V ++++ R +   + F G+  + F + E A+K ++  G
Sbjct:   115 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPG 172

Query:   177 LFYAGVEL 184
               Y   +L
Sbjct:   173 QKYKETDL 180

 Score = 114 (45.2 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
 Identities = 38/144 (26%), Positives = 62/144 (43%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   242 DQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEK--AKEALGKAKDANNGNLQLRNK 299

Query:   390 IAVLEPVTGEAEKEYWS-LLRGNQE-------RHRDVKGEEKHLEAENKAASEKMIQQED 441
                 E + GE EKE    ++   QE       + R  KG+ K  +A    + +  +Q + 
Sbjct:   300 EVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGKGKVQFQG 359

Query:   442 AQIKPGKFEQHEKPGISSGTSFVR 465
              + K    ++H++   +  T  V+
Sbjct:   360 KKTKFASDDEHDEHDENGATGPVK 383


>UNIPROTKB|E2RH09 [details] [associations]
            symbol:SSB "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
            SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
            GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
            RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
            Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
            Uniprot:E2RH09
        Length = 406

 Score = 131 (51.2 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 44/174 (25%), Positives = 85/174 (48%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
                   D   +D++ +     +V ++++ R +   + F G+    F + E A K
Sbjct:   115 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFAVFDSIESARK 166

 Score = 120 (47.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 54/227 (23%), Positives = 90/227 (39%)

Query:   247 GSLKPANDS-ENACK----PDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELXXXX 301
             GS+    DS E+A K    PD +   +D     + +  A +N+   + KVE K       
Sbjct:   152 GSIFAVFDSIESARKFVDTPDQKYKDTDLLILFKEDYFAKKNEERKQNKVEAKLRAKQEQ 211

Query:   302 XXXXXXXXXXXXXXXXXXXX-IDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGAESG 359
                                  +  +  ++D    REDL  +F   G +K+IDF  GA+ G
Sbjct:   212 EEKQKLAESAEIKSLEEKIGCLLKFSGDLDDQTCREDLHILFSSHGEIKWIDFVRGAKEG 271

Query:   360 YIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVLEPVTGEAEKEYWS-LLRGNQE----- 413
              I F+E                G L ++N     E + G+ EKE    ++   QE     
Sbjct:   272 IILFKEK--AKEALDKAKDANNGNLQLRNKEVTWEVLEGDVEKEALKKIIEDQQESLNKW 329

Query:   414 --RHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGIS 458
               + R  KG+ K  +A    +++  +Q +  + K    E+H++ G S
Sbjct:   330 KSKGRRFKGKGKGNKAAQTGSAKGKVQFQGKKTKFDSDEEHDQNGAS 376


>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
            symbol:larp7 "La ribonucleoprotein domain family,
            member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
            EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
            HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
            GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
            HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
            NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
            Pfam:PF08777 Uniprot:Q7ZWE3
        Length = 555

 Score = 170 (64.9 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
 Identities = 46/163 (28%), Positives = 88/163 (53%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             V +QVEF+F D N+  D F++  I +S D  + +A++ +F RMK      N+ ++     
Sbjct:    46 VKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMK------NLTAD----- 94

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
              ++ +A  L+ S+ ++++++G ++ R    P  E  K+ +D RT+    L   V    +E
Sbjct:    95 -VKLIARALKNSTIVEVNDEGTRIRRKE--PLGETPKD-VDSRTVYVELLPKTVTHIWLE 150

Query:   132 AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK 174
               FS+   V  + +PR+ + +    G A +EF T+E A+K ++
Sbjct:   151 RVFSKCGHVVYISIPRYKSTRHSK-GFAFVEFETQEQAQKAVE 192

 Score = 72 (30.4 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
 Identities = 22/110 (20%), Positives = 47/110 (42%)

Query:   328 NMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVK 387
             N  +  +  +K +  +   V ++D   G   G++RF+  E            Q      K
Sbjct:   437 NQPLPSKRCIKDMLSELSPVAYVDLLDGDTEGHVRFKSSEDAQKVIKARFEFQ------K 490

Query:   388 NFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMI 437
              +   LE ++G+ E+ YW  +  +++   +   E+K    +  + +EK+I
Sbjct:   491 KYNWNLELLSGDHERRYWQKILVDRQAKLNTPREKKRGTEKLISKAEKII 540

 Score = 51 (23.0 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query:   394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHE 453
             E  +GE + E  S +R  +E     K E K L +ENK      ++++D  +   K ++ +
Sbjct:   288 EASSGEDQFEMSSKMRKVEEE----KSELKDLSSENKDEELNSLKKKDDSVLKAKRKRKK 343

Query:   454 K 454
             K
Sbjct:   344 K 344

 Score = 45 (20.9 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query:   234 LKNKSAEGSEEKNGSLKPANDS 255
             LK+ S+E  +E+  SLK  +DS
Sbjct:   312 LKDLSSENKDEELNSLKKKDDS 333

 Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query:   161 IEFSTEEDAEKVLK 174
             + F + EDA+KV+K
Sbjct:   470 VRFKSSEDAQKVIK 483

 Score = 38 (18.4 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query:   253 NDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEE-KN 295
             N  E+A +  G    +    AV  +    +ND +G+ K  E KN
Sbjct:   196 NPPEDAPRKPGIFPKTCRKKAVPFDAVTQDNDEDGKKKKTELKN 239


>UNIPROTKB|F1NYE7 [details] [associations]
            symbol:SSB "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
            "RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
            EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
            ArrayExpress:F1NYE7 Uniprot:F1NYE7
        Length = 404

 Score = 135 (52.6 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 41/165 (24%), Positives = 80/165 (48%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +Q+E+YF + N+P D+FL+ +I +  D  V L ++  F R+          S+D    
Sbjct:    17 ICQQIEYYFGNHNLPRDKFLKEQI-KLDDGWVPLEVMIKFNRLSR-------LSKDFG-- 66

Query:    72 TLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVK 126
                 + E LRKS +  ++++ED  K+ RS   P  E   + K  +  R++       D  
Sbjct:    67 ---VIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123

Query:   127 REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
              +D++ +      V ++++ R +  ++ F G+    F + E A+K
Sbjct:   124 LDDIKEWLEDKGPVENIQMRRTL--QKTFKGSIFAVFDSVESAKK 166

 Score = 111 (44.1 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 40/138 (28%), Positives = 57/138 (41%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  VF   G +K+I F  GA+ G I F++                G L ++N 
Sbjct:   242 DQTCREDLHVVFSDHGEIKWIHFVRGAKEGIILFKD--AAKEALEKAKEAHNGNLQLRNK 299

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAEN-KAASEKMIQQEDAQIKPGK 448
                 E + G+AEKE    +  +Q+     KG+ + L+    K A      +   Q K  K
Sbjct:   300 DVTWELLEGDAEKEALKKILEDQQELLKQKGKGRKLKGRGGKMAQGAHKGKVQFQGKKIK 359

Query:   449 FEQHEKPGISSGTSFVRP 466
             FE  E     + T  V P
Sbjct:   360 FENEEGGEDDTKTEPVSP 377

 Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query:   412 QERHRD-VKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEK 454
             Q  H+  V+ + K ++ EN+   E   + E    K    E+ EK
Sbjct:   344 QGAHKGKVQFQGKKIKFENEEGGEDDTKTEPVSPKKRPLEETEK 387


>UNIPROTKB|E9PFH8 [details] [associations]
            symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
            ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
            Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
            Uniprot:E9PFH8
        Length = 361

 Score = 138 (53.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 47/188 (25%), Positives = 93/188 (49%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176
                   D   +D++ +     +V ++++ R +   + F G+  + F + E A+K ++  G
Sbjct:   115 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPG 172

Query:   177 LFYAGVEL 184
               Y   +L
Sbjct:   173 QKYKETDL 180

 Score = 102 (41.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 37/121 (30%), Positives = 53/121 (43%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   242 DQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEK--AKEALGKAKDANNGNLQLRNK 299

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKF 449
                 E + GE EKE    +  +Q+   + K + K      K A E+  ++E A  K  K 
Sbjct:   300 EVTWEVLEGEVEKEALKKIIEDQQESLN-KWKSK---GPVKRAREETDKEEPAS-KQQKT 354

Query:   450 E 450
             E
Sbjct:   355 E 355


>UNIPROTKB|E1BQG3 [details] [associations]
            symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
            EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
            ArrayExpress:E1BQG3 Uniprot:E1BQG3
        Length = 602

 Score = 172 (65.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 50/165 (30%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 91

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  ++ SS ++L  +G ++ R    P  E  K+ +D RT+    L  +V    +E
Sbjct:    92 ----IARAVKSSSVVELDLEGTRIRRRR--PLGERPKD-VDSRTVYVELLPKNVNHSWIE 144

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  V +PR+    D +   G A +EF T+E AEK ++
Sbjct:   145 RVFGKCGNVVYVSIPRYKSTGDPK---GFAFVEFETKEQAEKAIE 186

 Score = 71 (30.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 29/118 (24%), Positives = 46/118 (38%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ +K        V ++D   G    ++RF  PE            Q     +KN     
Sbjct:   488 RKQIKDALAMLADVAYVDMLEGDTECHVRFNTPEDAQTVMKSHKDLQ-----IKNNWKY- 541

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIK 445
             E +TG+ E+ YW  +      + NQ R +  +G EK +    +   EK  QQ    I+
Sbjct:   542 EILTGDNEQRYWQKILVDRQAKLNQPREKK-RGTEKLIAKAERMRLEKT-QQTSKHIR 597


>UNIPROTKB|P10881 [details] [associations]
            symbol:SSB "Lupus La protein homolog" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
            InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
            EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
            RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
            SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
            GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
            HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
        Length = 404

 Score = 135 (52.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 47/188 (25%), Positives = 92/188 (48%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176
                   D   +D++ +     +V ++++ R +   + F G+    F + E A+K ++  G
Sbjct:   115 IKGFPTDAALDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFAVFDSIESAKKFVETPG 172

Query:   177 LFYAGVEL 184
               Y   +L
Sbjct:   173 QKYKDTDL 180

 Score = 105 (42.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 36/144 (25%), Positives = 61/144 (42%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL ++F   G +K+I F  GA+ G I F+E                G L ++N 
Sbjct:   242 DQTCREDLHTLFSNHGEIKWIHFVRGAKEGIILFKEK--AKEALDKAKEANNGNLQLRNK 299

Query:   390 IAVLEPVTGEAEKEYWS-LLRGNQE-------RHRDVKGEEKHLEAENKAASEKMIQQED 441
                 E + G+ EKE    ++   QE       + R  KG+ K  +A    +++  +Q + 
Sbjct:   300 EVTWEVLEGDVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQAGSAKGKVQFQG 359

Query:   442 AQIKPGKFEQHEKPGISSGTSFVR 465
              + K    ++ ++ G S      R
Sbjct:   360 KKTKFDSDDERDENGASRAVKRAR 383


>ASPGD|ASPL0000060980 [details] [associations]
            symbol:AN1045 species:162425 "Emericella nidulans"
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:AACD01000016
            EMBL:BN001308 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
            OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715 RefSeq:XP_658649.1
            ProteinModelPortal:Q5BEI5 STRING:Q5BEI5
            EnsemblFungi:CADANIAT00001597 GeneID:2876822 KEGG:ani:AN1045.2
            HOGENOM:HOG000206315 OMA:EVQKDAR Uniprot:Q5BEI5
        Length = 400

 Score = 192 (72.6 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 60/186 (32%), Positives = 97/186 (52%)

Query:     3 SLDEETAQAV-LR-QVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             S  +ET   V +R QVEFYFSDSN+P D+FL  K+  S +  V L L+ SFKRM+     
Sbjct:    98 STQKETDDPVEIRKQVEFYFSDSNLPMDKFLLSKVGGSKNNPVPLELLHSFKRMRRF--- 154

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP-TAEE---------MKEQ 110
                           A+ E L+ S +L+L+++   V R   LP T ++          +++
Sbjct:   155 ----------QPFSAIVEALKNSETLELTDNDTAVRRKVPLPETVKDTHDPTVVKVFEDK 204

Query:   111 LDVRTIAATPL--EYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEED 168
                R+I A     E    + D+EAFF+ +  +N++RL R   +++ F G+  +EF++EE 
Sbjct:   205 AMARSIYAKGFGEETPTTQLDIEAFFAPYGPINAIRLRR--TNEKYFKGSVFVEFASEEK 262

Query:   169 AEKVLK 174
              +  L+
Sbjct:   263 QKAFLE 268


>UNIPROTKB|F1NJ86 [details] [associations]
            symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
            Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
        Length = 233

 Score = 172 (65.6 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 50/165 (30%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 91

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  ++ SS ++L  +G ++ R    P  E  K+ +D RT+    L  +V    +E
Sbjct:    92 ----IARAVKSSSVVELDLEGTRIRRRR--PLGERPKD-VDSRTVYVELLPKNVNHSWIE 144

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  V +PR+    D +   G A +EF T+E AEK ++
Sbjct:   145 RVFGKCGNVVYVSIPRYKSTGDPK---GFAFVEFETKEQAEKAIE 186


>UNIPROTKB|F1S1V1 [details] [associations]
            symbol:SSB "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
            Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
        Length = 402

 Score = 141 (54.7 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 45/177 (25%), Positives = 86/177 (48%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+       NV        
Sbjct:    17 ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNV-------- 67

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVKRE 128
              +EA++++  K+  +++SED  K+ RS   P  E   E K  L  R++       D   +
Sbjct:    68 IIEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTDATLD 125

Query:   129 DVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVEL 184
             D++ +     ++ ++++ R +   + F G+    F + E A+K +K  G  Y   +L
Sbjct:   126 DIKDWLEDKGEILNIQMRRTL--HKTFKGSIFAVFDSIESAKKFVKTPGQKYKDTDL 180

 Score = 94 (38.1 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
 Identities = 25/85 (29%), Positives = 40/85 (47%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   RED  ++F + G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   242 DQTSREDFHNLFARHGEIKWIDFVRGAKEGTILFKER--AKEVLARARDAHHGNLQIRNK 299

Query:   390 IAVLEPVTGEAEKEYW-SLLRGNQE 413
               V E + G+ E+     +++  QE
Sbjct:   300 RVVWEVLRGDMERRALRKIIQDQQE 324


>UNIPROTKB|F1MR14 [details] [associations]
            symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
            EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
            EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
            ArrayExpress:F1MR14 Uniprot:F1MR14
        Length = 578

 Score = 167 (63.8 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             +++QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    36 IVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 87

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  L+ S+ ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    88 ----IARALKSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 140

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   141 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 182

 Score = 65 (27.9 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
 Identities = 27/123 (21%), Positives = 48/123 (39%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ ++        V ++D   G    + RF+ PE            +      K     L
Sbjct:   464 RKQVRDTLAAISEVVYVDLLEGDTECHARFKTPEDAQAVVTAHSEIK------KKHCWQL 517

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K   EK  QQ    I+  
Sbjct:   518 EILSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLEKT-QQASQHIRFS 575

Query:   448 KFE 450
             +++
Sbjct:   576 EYD 578

 Score = 39 (18.8 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
 Identities = 18/67 (26%), Positives = 24/67 (35%)

Query:   216 NNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVE 275
             NN   EA    G+    T+KNK          +L    + +   K  G     DN    E
Sbjct:   185 NNPPEEAPRKPGVFPK-TVKNKPIP-------ALSVTEEKKKKKKKKGRTKKDDNIQTKE 236

Query:   276 SEQKASE 282
             S   AS+
Sbjct:   237 SNMDASK 243

 Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query:   385 SVKNFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEK 435
             +VKN       VT E +K+     +G  ++  +++ +E +++A  ++  +K
Sbjct:   201 TVKNKPIPALSVTEEKKKK--KKKKGRTKKDDNIQTKESNMDASKESGCKK 249


>UNIPROTKB|E2QW27 [details] [associations]
            symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
            EMBL:AAEX03016829 ProteinModelPortal:E2QW27
            Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
        Length = 582

 Score = 168 (64.2 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
 Identities = 48/165 (29%), Positives = 83/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    37 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 88

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  L+ SS ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    89 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 141

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   142 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 183

 Score = 62 (26.9 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
 Identities = 26/123 (21%), Positives = 48/123 (39%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ ++        V ++D   G    + RF+ PE            +      K +   L
Sbjct:   468 RKQVRDTLAAISEVVYVDLLEGDTECHARFKSPEDAQAVINACTEIK------KKYCWKL 521

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K    K  QQ    I+  
Sbjct:   522 EILSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLAKT-QQASKHIRFS 579

Query:   448 KFE 450
             +++
Sbjct:   580 EYD 582

 Score = 44 (20.5 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
 Identities = 24/122 (19%), Positives = 45/122 (36%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQE-GGLSVKN 388
             D +  ++L +   K    K    +  +E   +   EP+            QE   L +  
Sbjct:   231 DSIQTKELNTDTDKESVAKMKRSRTTSEGSEVEITEPQKPPSKKKKKRERQEVSSLPIVR 290

Query:   389 FIAVLEPVTGEAEKEY--WSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDA-QIK 445
                    ++ EAE       + +G Q   +D+K E+  +  ENK       +++D   +K
Sbjct:   291 TGKRKRSISEEAESPTPRSKVKKGTQ---KDIKKEDLEVSKENKDLEVSTEEEKDTGDVK 347

Query:   446 PG 447
              G
Sbjct:   348 DG 349


>MGI|MGI:107634 [details] [associations]
            symbol:Larp7 "La ribonucleoprotein domain family, member 7"
            species:10090 "Mus musculus" [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IGI]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0035562 "negative regulation of chromatin binding"
            evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
            [GO:1900087 "positive regulation of G1/S transition of mitotic cell
            cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
            HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
            Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
            EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
            EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
            RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
            SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
            PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
            GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
            GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
            NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
            Uniprot:Q05CL8
        Length = 570

 Score = 164 (62.8 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D+FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 83

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  L+ SS ++L  +G ++ R    P  E  K++ + RT+    L  +V    +E
Sbjct:    84 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-EERTVYVELLPKNVTHSWIE 136

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   137 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 178

 Score = 64 (27.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
 Identities = 28/123 (22%), Positives = 48/123 (39%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ +K +      V +ID   G    + RF+ PE            +      K     L
Sbjct:   456 RKQVKDILATISEVVYIDLLEGDTECHARFKTPEDAQAVMNAQTEIR------KKHSWNL 509

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K    K  QQ    I+  
Sbjct:   510 EVLSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLAKT-QQASQHIRFS 567

Query:   448 KFE 450
             +++
Sbjct:   568 EYD 570


>FB|FBgn0011638 [details] [associations]
            symbol:La "La autoantigen-like" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
            "5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
            "mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
            eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
            InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
            EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
            RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
            SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
            STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
            EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
            CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
            OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
            Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
        Length = 390

 Score = 178 (67.7 bits), Expect = 9.1e-11, P = 9.1e-11
 Identities = 75/299 (25%), Positives = 133/299 (44%)

Query:    10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIP 69
             +A++RQVE+YF D+N+  D+FLR +I ++ D  V L+++ +FKR+             + 
Sbjct:    52 RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLAS-----------LS 100

Query:    70 EDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYD 124
              D  E VA  L KS    +++SED + + R  E P  E   E ++++  RT  A     D
Sbjct:   101 TDLSEIVA-ALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLD 159

Query:   125 VKREDVEAFFSQHVKVNSVRLPRHVADKRL----FCGTALIEFSTEEDAEKVLKQG-LFY 179
              +  ++  F + + KV ++ + +H  DK      F G+  + F T++ A+  L+Q  + Y
Sbjct:   160 SQISELLDFAANYDKVVNLTMRKHY-DKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVY 218

Query:   180 AGVELHLXXXXXXXXXXXXXXXXXXXSRPAVGSNRKNNSNAEA-DYPKGLIVAFTLKNKS 238
                EL                      R     N+K      A + PK  IV F    ++
Sbjct:   219 KERELLRKWQVDYLKEKQEEYAQKNEKR----KNKKEAKPEPAFELPKNAIVVFEGAPET 274

Query:   239 AEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNEL 297
             +   EE   + +   D E A     + ++  +    E++          EGK++ K+E+
Sbjct:   275 SS-REEIREAFEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFKDEV 332


>RGD|1592474 [details] [associations]
            symbol:Larp7 "La ribonucleoprotein domain family, member 7"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
            "negative regulation of chromatin binding" evidence=ISO]
            [GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
            "positive regulation of G1/S transition of mitotic cell cycle"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
            HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
            OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
            IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
            ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
            PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
            ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
        Length = 571

 Score = 163 (62.4 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
 Identities = 47/165 (28%), Positives = 83/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 84

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  L+ SS ++L  +G ++ R    P  E  K++ + RT+    L  +V    +E
Sbjct:    85 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-EERTVYVELLPKNVTHSWIE 137

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   138 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 179

 Score = 63 (27.2 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
 Identities = 28/123 (22%), Positives = 48/123 (39%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ +K +      V +ID   G    + RF+ PE            +      K     L
Sbjct:   457 RKQVKDILATISEVVYIDLLEGDTECHARFKTPEDAQAVMNAQTEIK------KKHSWNL 510

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K    K  QQ    I+  
Sbjct:   511 EILSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLAKT-QQASQHIRFS 568

Query:   448 KFE 450
             +++
Sbjct:   569 EYD 571


>UNIPROTKB|Q5XI01 [details] [associations]
            symbol:Larp7 "La-related protein 7" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
            HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
            OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
            IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
            ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
            PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
            ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
        Length = 571

 Score = 163 (62.4 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
 Identities = 47/165 (28%), Positives = 83/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 84

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  L+ SS ++L  +G ++ R    P  E  K++ + RT+    L  +V    +E
Sbjct:    85 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-EERTVYVELLPKNVTHSWIE 137

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   138 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 179

 Score = 63 (27.2 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
 Identities = 28/123 (22%), Positives = 48/123 (39%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ +K +      V +ID   G    + RF+ PE            +      K     L
Sbjct:   457 RKQVKDILATISEVVYIDLLEGDTECHARFKTPEDAQAVMNAQTEIK------KKHSWNL 510

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K    K  QQ    I+  
Sbjct:   511 EILSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLAKT-QQASQHIRFS 568

Query:   448 KFE 450
             +++
Sbjct:   569 EYD 571


>UNIPROTKB|Q4G0J3 [details] [associations]
            symbol:LARP7 "La-related protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
            "RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
            HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
            Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
            EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
            PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
            RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
            SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
            STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
            PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
            Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
            GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
            MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
            InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
            ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
            Genevestigator:Q4G0J3 Uniprot:Q4G0J3
        Length = 582

 Score = 168 (64.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 48/165 (29%), Positives = 83/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  LR S+ ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    90 ----IARALRSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 184

 Score = 57 (25.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 26/123 (21%), Positives = 46/123 (37%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ ++        V ++D   G    + RF+ PE                   K     L
Sbjct:   468 RKQVRDTLAAISEVLYVDLLEGDTECHARFKTPEDAQAVINAYTEIN------KKHCWKL 521

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G EK +    K    K  QQ    I+  
Sbjct:   522 EILSGDHEQRYWQKILVDRQAKLNQPREKK-RGTEKLITKAEKIRLAKT-QQASKHIRFS 579

Query:   448 KFE 450
             +++
Sbjct:   580 EYD 582

 Score = 38 (18.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 6/34 (17%), Positives = 20/34 (58%)

Query:   401 EKEYWSLLRGNQERHRDVKGEEKHLEAENKAASE 434
             EK+     +G  ++  +++ +E++++  N + S+
Sbjct:   217 EKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISK 250


>UNIPROTKB|F1S150 [details] [associations]
            symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
            Ensembl:ENSSSCT00000009986 Uniprot:F1S150
        Length = 582

 Score = 166 (63.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+           +  D
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKK-----------LTTD 86

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
               + +A  L+ S+ ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    87 R-KLIARALKSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 184

 Score = 54 (24.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
 Identities = 25/123 (20%), Positives = 47/123 (38%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             R+ ++        V ++D   G    + RF+ PE            +      K     L
Sbjct:   468 RKQVRDTLAAISEVVYVDLLEGDTECHARFKTPEDAQAVITAYTEIK------KKHCWKL 521

Query:   394 EPVTGEAEKEYWSLL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPG 447
             E ++G+ E+ YW  +      + NQ R +  +G +K +    K    K  QQ    I+  
Sbjct:   522 EILSGDHEQRYWQKILVDRQAKLNQPREKR-RGTDKLITKGEKIRLAKT-QQASKHIRFS 579

Query:   448 KFE 450
             +++
Sbjct:   580 EYD 582

 Score = 40 (19.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query:   216 NNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVE 275
             NN   EA    G+    T+KNK          +L+ A + +   K  G     DN    +
Sbjct:   187 NNPPEEAPRKPGIFPK-TVKNKPIP-------TLRVAEEKKKKKKKKGRMKKEDNIQTKD 238

Query:   276 SEQKASENDS 285
             S    +  D+
Sbjct:   239 SNTDTTSKDT 248


>POMBASE|SPAC57A10.10c [details] [associations]
            symbol:sla1 "La protein homolog" species:4896
            "Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
            polymerase III transcription" evidence=TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
            of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
            cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
            3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
            PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
            RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
            PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
            KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
            KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
            GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
            SMART:SM00715 Uniprot:P87058
        Length = 298

 Score = 169 (64.5 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 59/177 (33%), Positives = 91/177 (51%)

Query:     3 SLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGN 62
             S DE  A+ VL+QVEFYFSD+N+P D+FL    S+ +D  V +  I +FKRM+       
Sbjct:    61 SFDE--AE-VLKQVEFYFSDTNLPHDKFL-WTTSQKNDGWVPIQTIANFKRMRRF----- 111

Query:    63 VKSEDIPEDTLEAVAETLRKSSSL-KLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPL 121
                       LEA+   LRKS  L ++ E G KV R   L   +  K  ++ R++     
Sbjct:   112 --------QPLEAIVNALRKSPELLEVDEAGEKVRRMIPLVRVDN-KSVME-RSVYCKGF 161

Query:   122 --EYDVKREDVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175
               E D  +  +E FF ++   +++VR+ R   D + F G+  +EF   + A K L++
Sbjct:   162 GDEKDDTQIALEKFFEENAGPISAVRMRRD--DDKKFKGSVFVEFKEPDVANKFLEK 216


>UNIPROTKB|D6RFF0 [details] [associations]
            symbol:LARP7 "La-related protein 7" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
            HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
            ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
            ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
        Length = 299

 Score = 168 (64.2 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 48/165 (29%), Positives = 83/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
                 +A  LR S+ ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    90 ----IARALRSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 184

 Score = 38 (18.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 6/34 (17%), Positives = 20/34 (58%)

Query:   401 EKEYWSLLRGNQERHRDVKGEEKHLEAENKAASE 434
             EK+     +G  ++  +++ +E++++  N + S+
Sbjct:   217 EKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISK 250


>RGD|1592944 [details] [associations]
            symbol:LOC680385 "similar to Sjogren syndrome antigen B"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
            GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
            RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
            Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
            UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
        Length = 402

 Score = 123 (48.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 43/174 (24%), Positives = 87/174 (50%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  VSL  +  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPQDKFLKEQI-KLDEGWVSLETMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKE-QLDV--RTIA 117
              NV         ++A++++  K+  +++S D  K+ RS   P  E M E + DV  R++ 
Sbjct:    65 FNV--------IVQALSKS--KAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
                   D   +D++ +     ++ ++++ R +   + F G+    F + + A+K
Sbjct:   115 IKGFPTDATLDDIKEWLDDKGQILNIQMRRKL--HKTFKGSIFAVFDSIQSAKK 166

 Score = 94 (38.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   241 DQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEK--AKDTLEKARSANNGNLLLRNK 298

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQE 413
                 + + G AEK+    +  +Q+
Sbjct:   299 KMTWKVLEGHAEKDAMKKITDDQQ 322


>UNIPROTKB|I3LNK9 [details] [associations]
            symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464
            Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
        Length = 580

 Score = 166 (63.5 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
 Identities = 47/165 (28%), Positives = 84/165 (50%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+           +  D
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKK-----------LTTD 86

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
               + +A  L+ S+ ++L  +G ++ R    P  E  K++ D RT+    L  +V    +E
Sbjct:    87 R-KLIARALKSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142

Query:   132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVLK 174
               F +   V  + +P +    D +   G A +EF T+E A K ++
Sbjct:   143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE 184

 Score = 49 (22.3 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
 Identities = 24/110 (21%), Positives = 43/110 (39%)

Query:   347 VKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVLEPVTGEAEKEYWS 406
             V ++D   G    + RF+ PE            +      K     LE ++G+ E+ YW 
Sbjct:   479 VVYVDLLEGDTECHARFKTPEDAQAVITAYTEIK------KKHCWKLEILSGDHEQRYWQ 532

Query:   407 LL------RGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFE 450
              +      + NQ R +  +G +K +    K    K  QQ    I+  +++
Sbjct:   533 KILVDRQAKLNQPREKR-RGTDKLITKGEKIRLAKT-QQASKHIRFSEYD 580

 Score = 40 (19.1 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query:   216 NNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVE 275
             NN   EA    G+    T+KNK          +L+ A + +   K  G     DN    +
Sbjct:   187 NNPPEEAPRKPGIFPK-TVKNKPIP-------TLRVAEEKKKKKKKKGRMKKEDNIQTKD 238

Query:   276 SEQKASENDS 285
             S    +  D+
Sbjct:   239 SNTDTTSKDT 248


>UNIPROTKB|Q66HM7 [details] [associations]
            symbol:Ssb "Sjogren syndrome antigen B" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
            KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
            Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
            HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
            IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
            Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
            InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
            Uniprot:Q66HM7
        Length = 415

 Score = 116 (45.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 40/174 (22%), Positives = 85/174 (48%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L  +  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         ++A++++  K++ +++S D  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVQALSKS--KANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
                   D   +D++ +     ++ ++++ R +   + F G+    F + + A+K
Sbjct:   115 IKGFPTDATLDDIKEWLDDKGQILNIQMRRTL--HKTFKGSIFAVFDSIQSAKK 166

 Score = 95 (38.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   241 DQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEK--AKDALEKARSANNGNLLLRNK 298

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQE 413
                 + + G AEK+    +  +Q+
Sbjct:   299 KVTWKVLEGHAEKDAMKKITDDQQ 322


>ZFIN|ZDB-GENE-030131-223 [details] [associations]
            symbol:ssb "Sjogren syndrome antigen B (autoantigen
            La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
            HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
            GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
            HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
            EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
            SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
            KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
        Length = 401

 Score = 133 (51.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 45/180 (25%), Positives = 87/180 (48%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             M+ L+++ A+    Q+E+YF D N+P D+FL+ ++ +  D  V L  +  F R+K     
Sbjct:     7 MSPLEKKVAE----QIEYYFGDHNLPRDKFLKEQL-QLDDGWVPLETMLKFNRLK----- 56

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAEEMKEQLDV---RT 115
              ++ SE+        + E+L KS +  L++SED  K+ R    P  E  +E  D    ++
Sbjct:    57 -SLTSEE------SVIVESLLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKS 109

Query:   116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175
             I       +   +DV+ + +      ++ L +    ++ F G+      TEE A+  +++
Sbjct:   110 IYMKGFPLETTLDDVKEWLADKGTFENIYLRK--GPQKTFKGSIFAVLETEEAAKAFVER 167

 Score = 76 (31.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 35/138 (25%), Positives = 50/138 (36%)

Query:   334 REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVL 393
             RED  SVF     +K+IDF  GA+ G I F                 E    VK      
Sbjct:   243 REDFHSVFSDHAQIKWIDFTRGAKEGTILFHSNAKEALQKVREALNGEDP-KVKEQAVQW 301

Query:   394 EPVTGEAEKEYWS-LLRGNQERHRDVKGEEKHLEAENKAASEKMIQ--QEDAQIK--PGK 448
             E + G+ E E    ++   QE     KG         +    +  +  +E  Q K    K
Sbjct:   302 EILEGDVEMETLKKIIEDQQESINKRKGGRGGFRGRGRGRGGRRDRGGREHTQFKGKKTK 361

Query:   449 FEQHEKPGISSGTSFVRP 466
             F+  E+    S ++  RP
Sbjct:   362 FDSDEEGDEESASTKKRP 379

 Score = 37 (18.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query:   241 GSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGE 288
             G     G  +         K D + +  + +A+ +     S    NGE
Sbjct:   342 GGRRDRGGREHTQFKGKKTKFDSDEEGDEESASTKKRPLESNRQDNGE 389


>MGI|MGI:98423 [details] [associations]
            symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
            processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
            InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
            HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
            EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
            RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
            SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
            PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
            Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
            KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
            Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
            GermOnline:ENSMUSG00000068882 Uniprot:P32067
        Length = 415

 Score = 115 (45.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 37/166 (22%), Positives = 80/166 (48%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             +  Q+E+YF D N+P D+FL+ +I +  +  V L  +  F R+       NV        
Sbjct:    17 ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNV-------- 67

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVKRE 128
              ++A++++  K+  +++S D  K+ RS   P  E   E K  +  R++       D   +
Sbjct:    68 IVQALSKS--KAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLD 125

Query:   129 DVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK 174
             D++ +     ++ ++++ R +   + F G+    F + + A+K ++
Sbjct:   126 DIKEWLDDKGQILNIQMRRTL--HKTFKGSIFAVFDSIQSAKKFVE 169

 Score = 96 (38.9 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K++DF  GA+ G I F+E                G L ++N 
Sbjct:   241 DQTCREDLHFLFSNHGEIKWVDFARGAKEGIILFKEK--AKEALEKARNANNGNLLLRNK 298

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQE 413
                 + + G AEKE    +  +Q+
Sbjct:   299 KVTWKVLEGHAEKEALKKITDDQQ 322


>TAIR|locus:2170478 [details] [associations]
            symbol:LARP6a "La related protein 6a" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
            "Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
            Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
            EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
            UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
            STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
            KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
            PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
            Uniprot:Q94A38
        Length = 422

 Score = 162 (62.1 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 53/177 (29%), Positives = 83/177 (46%)

Query:     6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKS 65
             +E  Q ++RQVE+YFSD N+PTD+FL   +  +    V ++ I +F +MK+         
Sbjct:   101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKK--------- 151

Query:    66 EDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDV 125
               +  D    +   L++SS L +S D  KV R + LP   + K    + T+    L  D 
Sbjct:   152 --LTRDHA-LIVSALKESSFLVVSADEKKVKRLSPLPEIRDPK----IFTVLVENLPEDH 204

Query:   126 KREDVEAFFSQHVKVNSVRL--PRHVAD------KRLFCGT---ALIEFSTEEDAEK 171
               E++   F +   + SV +  P  V +      K  F  T   A +E+ T E AEK
Sbjct:   205 SNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEK 261


>RGD|620804 [details] [associations]
            symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
            HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
            PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
            DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
            UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
            Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
        Length = 415

 Score = 116 (45.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 40/174 (22%), Positives = 85/174 (48%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L  +  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         ++A++++  K++ +++S D  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVQALSKS--KANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
                   D   +D++ +     ++ ++++ R +   + F G+    F + + A+K
Sbjct:   115 IKGFPTDATLDDIKEWLDDKGQILNIQMRRTL--HKTFKGSIFAVFDSIQSAKK 166

 Score = 91 (37.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   RED   +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   241 DQTCREDFHFLFSNHGEIKWIDFVRGAKEGIILFKEK--AKDALEKARSANNGNLLLRNK 298

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQE 413
                 + + G AEK+    +  +Q+
Sbjct:   299 KVTWKVLEGHAEKDAMKKITDDQQ 322


>UNIPROTKB|E7ERC4 [details] [associations]
            symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
            ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
            Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
            Uniprot:E7ERC4
        Length = 184

 Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 47/188 (25%), Positives = 93/188 (49%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176
                   D   +D++ +     +V ++++ R +   + F G+  + F + E A+K ++  G
Sbjct:   115 IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL--HKAFKGSIFVVFDSIESAKKFVETPG 172

Query:   177 LFYAGVEL 184
               Y   +L
Sbjct:   173 QKYKETDL 180


>UNIPROTKB|F1MAB1 [details] [associations]
            symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
            Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
        Length = 381

 Score = 106 (42.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 35/150 (23%), Positives = 74/150 (49%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L  +  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
              NV         ++A++++  K++ +++S D  K+ RS   P  E   E K  +  R++ 
Sbjct:    65 FNV--------IVQALSKS--KANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVY 114

Query:   118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPR 147
                   D   +D++ +     ++ ++++ R
Sbjct:   115 IKGFPTDATLDDIKEWLDDKGQILNIQMRR 144

 Score = 95 (38.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query:   330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNF 389
             D   REDL  +F   G +K+IDF  GA+ G I F+E                G L ++N 
Sbjct:   207 DQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKEK--AKDALEKARSANNGNLLLRNK 264

Query:   390 IAVLEPVTGEAEKEYWSLLRGNQE 413
                 + + G AEK+    +  +Q+
Sbjct:   265 KVTWKVLEGHAEKDAMKKITDDQQ 288


>UNIPROTKB|D6RAF3 [details] [associations]
            symbol:LARP7 "La-related protein 7" species:9606 "Homo
            sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
            GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
            ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
            ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
            HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
        Length = 129

 Score = 126 (49.4 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 33/105 (31%), Positives = 57/105 (54%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTI 116
                 +A  LR S+ ++L  +G ++ R    P  E  K++ D RT+
Sbjct:    90 ----IARALRSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTV 127


>UNIPROTKB|F1P301 [details] [associations]
            symbol:SSB "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
            Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
        Length = 205

 Score = 135 (52.6 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 41/165 (24%), Positives = 80/165 (48%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +Q+E+YF + N+P D+FL+ +I +  D  V L ++  F R+          S+D    
Sbjct:    17 ICQQIEYYFGNHNLPRDKFLKEQI-KLDDGWVPLEVMIKFNRLSR-------LSKDFG-- 66

Query:    72 TLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVK 126
                 + E LRKS +  ++++ED  K+ RS   P  E   + K  +  R++       D  
Sbjct:    67 ---VIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123

Query:   127 REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEK 171
              +D++ +      V ++++ R +  ++ F G+    F + E A+K
Sbjct:   124 LDDIKEWLEDKGPVENIQMRRTL--QKTFKGSIFAVFDSVESAKK 166


>TAIR|locus:2051734 [details] [associations]
            symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
            thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
            EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
            EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
            IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
            UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
            ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
            EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
            TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
            PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
            Genevestigator:O80567 Uniprot:O80567
        Length = 545

 Score = 146 (56.5 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 45/141 (31%), Positives = 72/141 (51%)

Query:     4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNV 63
             L E++ Q ++ QVE+YFSD N+ T + L   I +  +  V + ++ SFK++K  +   N 
Sbjct:   189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVI---NN 245

Query:    64 KSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEY 123
              S+         +A  L+ S+ L +SEDG KV R +  P  E   E+L  R I A  L  
Sbjct:   246 NSQ---------LAAVLQNSAKLFVSEDGKKVRRIS--PITESAIEELQSRIIVAENLPE 294

Query:   124 DVKREDVEAFFSQHVKVNSVR 144
             D   +++   FS    V ++R
Sbjct:   295 DHCYQNLMKIFSTVGSVKNIR 315

 Score = 42 (19.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query:   240 EGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEG 289
             +G+E+  G  K  N      +  G+P  + N     S  +   ++ NG G
Sbjct:   441 QGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQ--NHNHNGRG 488


>DICTYBASE|DDB_G0281835 [details] [associations]
            symbol:DDB_G0281835 species:44689 "Dictyostelium
            discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102
            dictyBase:DDB_G0281835 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:AAFI02000043
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 RefSeq:XP_640449.1 ProteinModelPortal:Q54TE0
            EnsemblProtists:DDB0204237 GeneID:8623262 KEGG:ddi:DDB_G0281835
            InParanoid:Q54TE0 OMA:HITEFTE Uniprot:Q54TE0
        Length = 381

 Score = 140 (54.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 52/187 (27%), Positives = 90/187 (48%)

Query:     4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKI-SESSDAMVSLALICSFKRMKEHLHLGN 62
             + E     + + +EFYFSDSN+  D+FL   I +  +D  + L++I  F+++K  ++   
Sbjct:     1 MSENRVNDIKKLIEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVIN--- 57

Query:    63 VKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE----EMKEQLDVRTIAA 118
                  + E  LE V    + S  L L++D  K+ R  E P  E    E+KE +D +TI  
Sbjct:    58 --ENSLTEQELEQV---FKDSKLLILNQDKNKIKR-IEWPIKELTQLEIKE-IDEKTIYI 110

Query:   119 TPLEYDVKRED-VEAFFSQHVKV-----NSVRLPRHVA-----DKRLFCGTALIEFSTEE 167
              P+   +   D +        K+     N+  L +H++     DK L  G A +EFS ++
Sbjct:   111 EPITNKISTPDLIRKLLLLEQKIENDNNNNNELIQHISIPKFSDKTLK-GFAFVEFSNKD 169

Query:   168 DAEKVLK 174
              A + ++
Sbjct:   170 IANQTIR 176

 Score = 39 (18.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query:   346 TVKFIDFKIGAESGYIRF 363
             TV F+D+  G++   ++F
Sbjct:   292 TVSFLDYISGSDKAILKF 309


>UNIPROTKB|D6RF49 [details] [associations]
            symbol:LARP7 "La-related protein 7" species:9606 "Homo
            sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
            GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
            ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
            ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
            ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
        Length = 119

 Score = 114 (45.2 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +QV+F+F D+N+  D FLR +I +S D  V ++L+ SF +MK+    G +        
Sbjct:    38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89

Query:    72 TLEAVAETLRKSSSLKLSEDGMKVGRSAEL 101
                 +A  LR S+ ++L  +G ++ R   L
Sbjct:    90 ----IARALRSSAVVELDLEGTRIRRKKPL 115


>UNIPROTKB|Q5ZKS1 [details] [associations]
            symbol:SSB "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
            OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
            UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
            Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
            Uniprot:Q5ZKS1
        Length = 137

 Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 33/125 (26%), Positives = 61/125 (48%)

Query:    12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
             + +Q+E+YF + N+P D+FL+ +I +  D  V L ++  F R+          S+D    
Sbjct:    17 ICQQIEYYFGNHNLPRDKFLKEQI-KLDDGWVPLEVMIKFNRLSR-------LSKDFG-- 66

Query:    72 TLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVK 126
                 + E LRKS +  ++++ED  K+ RS   P  E   + K  +  R++       D  
Sbjct:    67 ---VIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDAT 123

Query:   127 REDVE 131
              +D++
Sbjct:   124 LDDIK 128


>FB|FBgn0033936 [details] [associations]
            symbol:CG17386 species:7227 "Drosophila melanogaster"
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
            EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
            InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
            RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
            EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
            UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
            OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
        Length = 867

 Score = 133 (51.9 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 46/141 (32%), Positives = 69/141 (48%)

Query:     6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKS 65
             EE A  +   VEFYFS+ +I  D FL   +  + +  VSL L+ SFKR+++      V  
Sbjct:   279 EELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVG 338

Query:    66 EDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYD- 124
             +        AV    RKS  ++L++ G KV R   LP+ +E    +  RTI A  L  D 
Sbjct:   339 D--------AVR---RKSRKIELNDVGTKVRRIEPLPSFDET---MPSRTIVACDLPLDK 384

Query:   125 VKREDVEAFFSQHVKVNSVRL 145
             +  E V   FS   ++  +R+
Sbjct:   385 LTIEKVSDLFSPCGEIALIRI 405


>UNIPROTKB|E9PFL9 [details] [associations]
            symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
            ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
            Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
            Uniprot:E9PFL9
        Length = 134

 Score = 105 (42.0 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 34/115 (29%), Positives = 61/115 (53%)

Query:     1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
             MA+L+ +    +  Q+E+YF D N+P D+FL+ +I +  +  V L ++  F R+      
Sbjct:    10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64

Query:    61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKE-QLDVR 114
              NV         +EA++++  K+  +++SED  K+ RS   P  E   E + DV+
Sbjct:    65 FNV--------IVEALSKS--KAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVK 109


>UNIPROTKB|F1MBD0 [details] [associations]
            symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
            Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
            EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
            ArrayExpress:F1MBD0 Uniprot:F1MBD0
        Length = 425

 Score = 127 (49.8 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             DEE  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    22 DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 74

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S +L+L+ED  KV R+  +P
Sbjct:    75 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 107

 Score = 42 (19.8 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query:   353 KIGA-ESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVLEPVTGEAEKE 403
             ++G  E   + FEE E             +G  S+K  +  ++P   +  KE
Sbjct:   185 QVGTQECAIVEFEEVEAAIKAHEFMITESQGRESMKAILIGMKPPKKKPSKE 236


>MGI|MGI:1914807 [details] [associations]
            symbol:Larp6 "La ribonucleoprotein domain family, member 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
            of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
            GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
            GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
            eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
            OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
            EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
            IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
            ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
            PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
            Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
            UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
            NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
            Uniprot:Q8BN59
        Length = 492

 Score = 127 (49.8 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             DEE  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    89 DEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S +L+L+ED  KV R+  +P
Sbjct:   142 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 174


>RGD|1308414 [details] [associations]
            symbol:Larp6 "La ribonucleoprotein domain family, member 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
            evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
            InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
            GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
            PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
            OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
            RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
            GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
            Uniprot:D3ZCR5
        Length = 492

 Score = 127 (49.8 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             DEE  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    89 DEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S +L+L+ED  KV R+  +P
Sbjct:   142 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 174


>TAIR|locus:2089508 [details] [associations]
            symbol:LARP6c "La related protein 6c" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
            Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
            IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
            ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
            EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
            TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
            PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
            Uniprot:Q9LHL3
        Length = 455

 Score = 126 (49.4 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 39/142 (27%), Positives = 72/142 (50%)

Query:     4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNV 63
             L ++    +++QVE+ F+D ++  +E +   IS+  +  V ++ I S K++K       +
Sbjct:   140 LSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKA------L 193

Query:    64 KSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEY 123
              S          V+  LR SS L +SEDG KV R+++    +  +E+L  RT+ A  L  
Sbjct:   194 TSNH------HLVSLALRSSSKLVVSEDGKKVKRTSQFTDRD--REELQGRTVVAENLPD 245

Query:   124 DVKREDVEAFFSQHVKVNSVRL 145
             D   +++E  F     V ++R+
Sbjct:   246 DHSYQNLEKIFGVVGNVKAIRI 267


>UNIPROTKB|F1SIT3 [details] [associations]
            symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
            Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
            EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
            Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
            Uniprot:F1SIT3
        Length = 492

 Score = 127 (49.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             DEE  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    89 DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S +L+L+ED  KV R+  +P
Sbjct:   142 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 174

 Score = 41 (19.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query:   353 KIGA-ESGYIRFEEPEGXXXXXXXXXXXQEGGLSVKNFIAVLEPVTGEAEKE 403
             ++G  E   + FEE E             +G  S+K  +  ++P   +  KE
Sbjct:   252 QVGTQECAIVEFEEVEAAIKAHEFMISESQGKESMKAVLIGMKPPKKKPSKE 303


>UNIPROTKB|F1PKV9 [details] [associations]
            symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
            PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
            Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
            SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
            EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
        Length = 428

 Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 34/98 (34%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             D+E  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    25 DQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 77

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S +L+L+ED  KV R+  +P
Sbjct:    78 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 110


>UNIPROTKB|Q9BRS8 [details] [associations]
            symbol:LARP6 "La-related protein 6" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
            "RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=IDA]
            InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
            PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
            GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
            Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
            EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
            EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
            IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
            RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
            ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
            PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
            Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
            KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
            HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
            PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
            HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
            ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
            Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
        Length = 491

 Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
 Identities = 35/98 (35%), Positives = 52/98 (53%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             DEE  + ++ Q+EFYFSD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    89 DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D         A  L+ S  L+L+ED  KV R+  +P
Sbjct:   142 TRD-----WRTTAHALKYSVVLELNEDHRKVRRTTPVP 174


>SGD|S000002923 [details] [associations]
            symbol:SLF1 "RNA binding protein that associates with
            polysomes" species:4932 "Saccharomyces cerevisiae" [GO:0003723 "RNA
            binding" evidence=IEA;IDA] [GO:0006417 "regulation of translation"
            evidence=IGI;IMP;IPI] [GO:0006878 "cellular copper ion homeostasis"
            evidence=IMP;IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] SGD:S000002923 GO:GO:0005737
            GO:GO:0006417 GO:GO:0006878 EMBL:BK006938 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 EMBL:U33057 RefSeq:NP_010803.3
            GeneID:852127 KEGG:sce:YDR515W GO:GO:0005844 KO:K09569
            RefSeq:NP_010807.3 GeneID:852131 KEGG:sce:YDR519W
            InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
            SMART:SM00715 EMBL:U30375 EMBL:AY692939 PIR:S59742
            ProteinModelPortal:Q12034 SMR:Q12034 DIP:DIP-2938N IntAct:Q12034
            MINT:MINT-574898 STRING:Q12034 PaxDb:Q12034 EnsemblFungi:YDR515W
            CYGD:YDR515w GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST
            NextBio:970519 Genevestigator:Q12034 GermOnline:YDR515W
            Uniprot:Q12034
        Length = 447

 Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query:     7 ETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLG 61
             ++ +++  Q+EFYFS+ N+ TDEFLR K  +++D  + ++LI  F RM  +L LG
Sbjct:   270 KSIESIKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMV-NLSLG 323


>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
            symbol:larp6 "La ribonucleoprotein domain family,
            member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
            InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
            ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
            InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
            Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
            HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
            RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
            GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
            ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
        Length = 485

 Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             D E  Q ++ Q+E+Y SD N+  D FL   +  +    VS+ L+ SFK++K HL      
Sbjct:    75 DPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVK-HL------ 127

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLE 122
             + D         A  LR S+ L+L+++G KV R + +P      E L  R +  + L+
Sbjct:   128 TRD-----WRTTAYALRHSNLLELNDEGRKVRRRSTVPVFAS--ESLPSRMLLLSELK 178


>UNIPROTKB|E1BVY8 [details] [associations]
            symbol:LOC420093 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
            InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
            GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
            Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
        Length = 173

 Score = 107 (42.7 bits), Expect = 0.00082, P = 0.00082
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query:     5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
             D +  + ++ QVEFY SD N+  D FL   + ++    VS+ L+ SFK++K +L      
Sbjct:    74 DPQLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVK-YL------ 126

Query:    65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
             + D    TL A    LR S  L+++++G KV R   +P
Sbjct:   127 TRDW-RLTLYA----LRFSKLLEVNQEGTKVRRRVPIP 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      498       444   0.00090  118 3  11 23  0.48    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  53
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  247 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.94u 0.10s 45.04t   Elapsed:  00:00:02
  Total cpu time:  44.95u 0.10s 45.05t   Elapsed:  00:00:02
  Start:  Fri May 10 15:17:44 2013   End:  Fri May 10 15:17:46 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with La1 La1 La1 AT4G32720	protein from Arabidopsis thaliana	7.3e-105
BLAST match view associations BLAST with La2 La2 La2 La protein 2	protein from Arabidopsis thaliana	8.7e-67
BLAST match view associations BLAST with DDB_G0281763 DDB_G0281763 DDB_G0281763 Lupus La protein	gene from Dictyostelium discoideum	4.4e-17
BLAST match view associations BLAST with LHP1 LHP1 LHP1 RNA binding protein required for maturation of tRNA and U6 snRNA	gene from Saccharomyces cerevisiae	1.2e-16
BLAST match view associations BLAST with orf19.2795 orf19.2795 orf19.2795	gene_product from Candida albicans	2.3e-14
BLAST match view associations BLAST with C44E4.4 C44E4.4 C44E4.4	gene from Caenorhabditis elegans	3.7e-14
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	9.8e-14
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Canis lupus familiaris	1.4e-13
BLAST match view associations BLAST with larp7 larp7 larp7 La ribonucleoprotein domain family, member 7	gene_product from Danio rerio	3.4e-13
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	4.3e-13
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	1.1e-12
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Gallus gallus	1.6e-12
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein homolog	protein from Bos taurus	1.8e-12
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Gallus gallus	2.8e-12
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Sus scrofa	5.0e-12
BLAST match view associations BLAST with F1MR14 F1MR14 F1MR14 Uncharacterized protein	protein from Bos taurus	1.9e-11
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-11
BLAST match view associations BLAST with Larp7 Larp7 Larp7 La ribonucleoprotein domain family, member 7	protein from Mus musculus	5.5e-11
BLAST match view associations BLAST with La La La La autoantigen-like	protein from Drosophila melanogaster	9.1e-11
BLAST match view associations BLAST with Larp7 Larp7 Larp7 La ribonucleoprotein domain family, member 7	gene from Rattus norvegicus	9.2e-11
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	1.1e-10
BLAST match view associations BLAST with LARP7 LARP7 LARP7 Uncharacterized protein	protein from Sus scrofa	2.6e-10
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with LOC680385 LOC680385 LOC680385 similar to Sjogren syndrome antigen B	gene from Rattus norvegicus	5.5e-10
BLAST match view associations BLAST with I3LNK9 I3LNK9 I3LNK9 Uncharacterized protein	protein from Sus scrofa	8.0e-10
BLAST match view associations BLAST with Ssb Ssb Ssb Lupus La protein homolog	protein from Rattus norvegicus	2.9e-09
BLAST match view associations BLAST with ssb ssb ssb Sjogren syndrome antigen B (autoantigen La)	gene_product from Danio rerio	2.9e-09
BLAST match view associations BLAST with Ssb Ssb Ssb Sjogren syndrome antigen B	protein from Mus musculus	3.0e-09
BLAST match view associations BLAST with LARP6a LARP6a LARP6a AT5G46250	protein from Arabidopsis thaliana	6.8e-09
BLAST match view associations BLAST with Ssb Ssb Ssb Sjogren syndrome antigen B	gene from Rattus norvegicus	7.4e-09
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	1.3e-08
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	2.7e-07
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	6.3e-07
BLAST match view associations BLAST with LARP6b LARP6b LARP6b AT2G43970	protein from Arabidopsis thaliana	8.9e-07
BLAST match view associations BLAST with DDB_G0281835 DDB_G0281835 DDB_G0281835	gene from Dictyostelium discoideum	2.5e-06
BLAST match view associations BLAST with LARP7 LARP7 LARP7 La-related protein 7	protein from Homo sapiens	5.3e-06
BLAST match view associations BLAST with SSB SSB SSB Uncharacterized protein	protein from Gallus gallus	1.4e-05
BLAST match view associations BLAST with CG17386 CG17386 CG17386	protein from Drosophila melanogaster	3.2e-05
BLAST match view associations BLAST with SSB SSB SSB Lupus La protein	protein from Homo sapiens	5.0e-05
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Bos taurus	5.1e-05
BLAST match view associations BLAST with Larp6 Larp6 Larp6 La ribonucleoprotein domain family, member 6	protein from Mus musculus	6.7e-05
BLAST match view associations BLAST with Larp6 Larp6 Larp6 La ribonucleoprotein domain family, member 6	gene from Rattus norvegicus	6.7e-05
BLAST match view associations BLAST with LARP6c LARP6c LARP6c AT3G19090	protein from Arabidopsis thaliana	7.6e-05
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Sus scrofa	0.00010
BLAST match view associations BLAST with LARP6 LARP6 LARP6 Uncharacterized protein	protein from Canis lupus familiaris	0.00011
BLAST match view associations BLAST with LARP6 LARP6 LARP6 La-related protein 6	protein from Homo sapiens	0.00014
BLAST match view associations BLAST with SLF1 SLF1 SLF1 RNA binding protein that associates with polysomes	gene from Saccharomyces cerevisiae	0.00020
BLAST match view associations BLAST with larp6 larp6 larp6 La ribonucleoprotein domain family, member 6	gene_product from Danio rerio	0.00038
BLAST match view associations BLAST with LOC420093 LOC420093 LOC420093 Uncharacterized protein	protein from Gallus gallus	0.00082