BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043731
(498 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 36/231 (15%)
Query: 7 ETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSE 66
E L+QVEFYFS+ N P D FLR +E +D V ++ I +F RMK++
Sbjct: 28 EVLDRCLKQVEFYFSEFNFPYDRFLRT-TAEKNDGWVPISTIATFNRMKKY--------- 77
Query: 67 DIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSA--ELPTAEEMKEQLDVRTIAATPLEY- 123
++ V E LR S L++S DG V R +L A + + + RT+A +
Sbjct: 78 ----RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHE 133
Query: 124 DVK-------REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-- 174
DV+ +E++EAFF + ++N VRL R +K+ F GT L+EF T + E LK
Sbjct: 134 DVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNKK-FNGTVLVEFKTIPECEAFLKSY 192
Query: 175 -------QGLFYAGVELHLKPKKEFEAER-AKETEEFE-KSRPAVGSNRKN 216
+ L Y G +L + KK+F+ +R A +++ F +SR G +KN
Sbjct: 193 SNDDESNEILSYEGKKLSVLTKKQFDLQREASKSKNFSGRSRSFNGHKKKN 243
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIP 69
+A++RQVE+YF D+N+ D+FLR +I ++ D V L+++ +FKR+ +
Sbjct: 52 RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLA-----------SLS 100
Query: 70 EDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTA---EEMKEQLDVRTIAATPLEYD 124
D E VA L KS +++SED + + R E P EE ++++ RT A D
Sbjct: 101 TDLSEIVA-ALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLD 159
Query: 125 VKREDVEAFFSQHVKVNSVRLPRHVADKRL----FCGTALIEFSTEEDAEKVLKQ-GLFY 179
+ ++ F + + KV ++ + +H DK F G+ + F T++ A+ L+Q + Y
Sbjct: 160 SQISELLDFAANYDKVVNLTMRKHY-DKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVY 218
Query: 180 AGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAF 232
EL K + ++ E+ EE+ + + ++ + PK IV F
Sbjct: 219 KERELLRKWQVDYLKEK---QEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVF 268
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 30/217 (13%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
VL+QVEFYFSD+N+P D+FL S+ +D V + I +FKRM+
Sbjct: 67 VLKQVEFYFSDTNLPHDKFL-WTTSQKNDGWVPIQTIANFKRMRRF-------------Q 112
Query: 72 TLEAVAETLRKSSS-LKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPL--EYDVKRE 128
LEA+ LRKS L++ E G KV R +P + + R++ E D +
Sbjct: 113 PLEAIVNALRKSPELLEVDEAGEKVRRM--IPLVRVDNKSVMERSVYCKGFGDEKDDTQI 170
Query: 129 DVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVE 183
+E FF ++ +++VR+ R D + F G+ +EF + A K L++ L + E
Sbjct: 171 ALEKFFEENAGPISAVRMRRD--DDKKFKGSVFVEFKEPDVANKFLEKVKTAPLKWGEDE 228
Query: 184 LHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNA 220
L + KKE+ +A E K+ P S+++ +A
Sbjct: 229 LTIMSKKEYVDMKA----ELHKNDPPKFSSKRRRFDA 261
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 33/192 (17%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ +QV+F+F D N+ D FLR +I ++ D + ++L+ SF +MK+ I D
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKK-----------ITTD 88
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
+ + +A ++ SS ++++ G K+ R P E+ ++ +D RT+ L +V +E
Sbjct: 89 S-KLIARAVKNSSVVEINLSGTKIRR--RFPLGEKPQD-VDSRTVYVELLPKNVTHSWIE 144
Query: 132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVL------------KQGL 177
F ++ V V +PR+ D + G A IEF T+E A K + K G+
Sbjct: 145 RVFGKYGMVVYVSIPRYKSTGDPK---GFAFIEFETQEQAAKAIEVLNNPPEEAPRKAGM 201
Query: 178 FYAGVE-LHLKP 188
F V+ HL P
Sbjct: 202 FPKTVKNKHLPP 213
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 16/162 (9%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
V +QVEF+F D N+ D F++ I +S D + +A++ +F RMK N+ ++
Sbjct: 46 VKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMK------NLTAD----- 94
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
++ +A L+ S+ ++++++G ++ R P E K+ +D RT+ L V +E
Sbjct: 95 -VKLIARALKNSTIVEVNDEGTRIRRKE--PLGETPKD-VDSRTVYVELLPKTVTHIWLE 150
Query: 132 AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173
FS+ V + +PR+ + R G A +EF T+E A+K +
Sbjct: 151 RVFSKCGHVVYISIPRYKST-RHSKGFAFVEFETQEQAQKAV 191
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 337 LKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396
+K + + V ++D G G++RF+ E AQK A Q K + LE +
Sbjct: 446 IKDMLSELSPVAYVDLLDGDTEGHVRFKSSEDAQKVIKARFEFQ------KKYNWNLELL 499
Query: 397 TGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMI 437
+G+ E+ YW + +++ + E+K + + +EK+I
Sbjct: 500 SGDHERRYWQKILVDRQAKLNTPREKKRGTEKLISKAEKII 540
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ +QV+F+F D+N+ D FLR +I +S D V ++L+ SF +MK+ G +
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
+A LR S+ ++L +G ++ R P E K++ D RT+ L +V +E
Sbjct: 90 ----IARALRSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142
Query: 132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVL 173
F + V + +P + D + G A +EF T+E A K +
Sbjct: 143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAI 183
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ +QV+F+F D+N+ D FLR +I +S D V ++L+ SF +MK+ G +
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 89
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
+A LR S+ ++L +G ++ R P E K++ D RT+ L +V +E
Sbjct: 90 ----IARALRSSAVVELDLEGTRIRRKK--PLGERPKDE-DERTVYVELLPKNVNHSWIE 142
Query: 132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVL 173
F + V + +P + D + G A +EF T+E A K +
Sbjct: 143 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAI 183
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ +QV+F+F D+N+ D FLR +I +S D V ++L+ SF +MK+ G +
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 84
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
+A L+ SS ++L +G ++ R P E K++ + RT+ L +V +E
Sbjct: 85 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-EERTVYVELLPKNVTHSWIE 137
Query: 132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVL 173
F + V + +P + D + G A +EF T+E A K +
Sbjct: 138 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAI 178
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ +QV+F+F D+N+ D+FLR +I +S D V ++L+ SF +MK+ G +
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKL-------- 83
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVE 131
+A L+ SS ++L +G ++ R P E K++ + RT+ L +V +E
Sbjct: 84 ----IARALKSSSVVELDLEGTRIRRKK--PLGERPKDE-EERTVYVELLPKNVTHSWIE 136
Query: 132 AFFSQHVKVNSVRLPRH--VADKRLFCGTALIEFSTEEDAEKVL 173
F + V + +P + D + G A +EF T+E A K +
Sbjct: 137 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAI 177
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 4 LDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNV 63
LD +T + Q+E+YF D N+P D+FL+ +I D V L + F R+ +
Sbjct: 11 LDSDTK--ICEQIEYYFGDHNLPRDKFLKQQIL-LDDGWVPLETMIKFNRLSK------- 60
Query: 64 KSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAA 118
+ D + + L+KS + L+++E+ K+ RS P E E K L +++
Sbjct: 61 ----LTTD-FNTILQALKKSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYI 115
Query: 119 TPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-QGL 177
+DV+ + + ++++ R + +R F G+ I F+T++DA+K L+ + L
Sbjct: 116 KGFPTSAILDDVKEWLKDKGPIENIQMRRTL--QREFKGSIFIIFNTDDDAKKFLENRNL 173
Query: 178 FYAGVELHLKPKKEFEAERAKE 199
Y ++ + ++E+ A++ +E
Sbjct: 174 KYKDNDMTVLSREEYHAKKNEE 195
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 327 DNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSV 386
DNM REDL ++F G +++IDF GA+ G + F+ A++A A A L +
Sbjct: 241 DNM--TSREDLHALFQTHGDIEWIDFSRGAKEGIVLFK--MNAKEALDKAKAANSDNLKL 296
Query: 387 KNFIAVLEPVTGEAEKEYW-SLLRGNQERHRDVKGEE 422
K E + G+ EKE +L G QE KG +
Sbjct: 297 KGKDVKWELIEGDTEKEALKKILEGKQESFNKRKGRD 333
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 24/193 (12%)
Query: 11 AVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSED--I 68
+ +RQ+E+YF D+N+ D+FL+ +IS+ + V + ++ +FKR+K SED +
Sbjct: 46 STIRQLEYYFGDANLARDKFLQEQISK-DEGWVPVDVLLTFKRLKSL-------SEDKKV 97
Query: 69 PEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTA---EEMKEQLDVRTIAATPL--EY 123
D +E E L +++SED K+ R E P EE ++++ RT+ E
Sbjct: 98 IVDAIEKSDEGL-----IEVSEDREKLRRHPERPLPEQNEETRKEIYGRTVYVKGFAPEE 152
Query: 124 DVKREDVEAFFSQHVKVNSVRLPRH---VADKRLFCGTALIEFSTEED-AEKVLKQGLFY 179
+ ++ FF K+ ++ + ++ K LF G+ + F+T++ AE + K+ L Y
Sbjct: 153 GTQMSELLEFFEPFEKITNIVMRKYHDKATKKYLFKGSVFVTFATKDHCAEFLKKEKLGY 212
Query: 180 AGVELHLKPKKEF 192
G EL K + ++
Sbjct: 213 KGKELIRKMQDDY 225
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
MA+L+ + + Q+E+YF D N+P D+FL+ +I + + V L ++ F R+
Sbjct: 10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64
Query: 61 GNVKSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRT 115
NV + E L KS + +++SED K+ RS P E E K + R+
Sbjct: 65 FNV------------IVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRS 112
Query: 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175
+ D +D++ + +V ++++ R + + F G+ + F + E A+K ++
Sbjct: 113 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVET 170
Query: 176 -GLFYAGVELHLKPKKEFEAERAKETEE 202
G Y +L + K ++ A++ +E ++
Sbjct: 171 PGQKYKETDLLILFKDDYFAKKNEERKQ 198
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389
D REDL +F G +K+IDF GA+ G I F+E A++A A A G L ++N
Sbjct: 242 DQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEK--AKEALGKAKDANNGNLQLRNK 299
Query: 390 IAVLEPVTGEAEKE 403
E + GE EKE
Sbjct: 300 EVTWEVLEGEVEKE 313
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
MA+L+ + + Q+E+YF D N+P D+FL+ +I + + V L ++ F R+
Sbjct: 10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTD 64
Query: 61 GNVKSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTAE---EMKEQLDVRT 115
NV + E L KS + +++SED K+ RS P E E K + R+
Sbjct: 65 FNV------------IVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRS 112
Query: 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173
+ D +D++ + +V ++++ R + + F G+ F + E A+K +
Sbjct: 113 VYIKGFPTDAALDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFAVFDSIESAKKFV 168
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389
D REDL ++F G +K+I F GA+ G I F+E A++A A A G L ++N
Sbjct: 242 DQTCREDLHTLFSNHGEIKWIHFVRGAKEGIILFKEK--AKEALDKAKEANNGNLQLRNK 299
Query: 390 IAVLEPVTGEAEKE 403
E + G+ EKE
Sbjct: 300 EVTWEVLEGDVEKE 313
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
DEE + ++ Q+EFYFSD N+ D FL + + VS+ L+ SFK++K HL
Sbjct: 89 DEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141
Query: 65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
+ D A L+ S +L+L+ED KV R+ +P
Sbjct: 142 TRD-----WRTTAHALKYSVTLELNEDHRKVRRTTPVP 174
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 7 ETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLG 61
++ +++ Q+EFYFS+ N+ TDEFLR K +++D + ++LI F RM +L LG
Sbjct: 270 KSIESIKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRM-VNLSLG 323
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVK 64
DEE + ++ Q+EFYFSD N+ D FL + + VS+ L+ SFK++K HL
Sbjct: 89 DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVK-HL------ 141
Query: 65 SEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELP 102
+ D A L+ S L+L+ED KV R+ +P
Sbjct: 142 TRD-----WRTTAHALKYSVVLELNEDHRKVRRTTPVP 174
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ Q+E+YF D N+P D+FL+ ++ + V L + F R+ + N+
Sbjct: 16 ICEQIEYYFGDHNLPRDKFLKQQVL-LDNGWVPLETMIKFNRLSKLTTDFNI-------- 66
Query: 72 TLEAVAETLRKSSS--LKLSEDGMKVGRSAELPTA---EEMKEQLDVRTIAATPLEYDVK 126
+ + L+KS + L+++E+ K+ RS P E+ K R++
Sbjct: 67 ----ILQALKKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTITN 122
Query: 127 REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-QGLFYAGVELH 185
++++ + + + ++++ R + +R F G+ + F+TE+ A+K L+ + L Y ++
Sbjct: 123 LDEIKEWLNDKGPIENIQMRRTL--QREFKGSVFLVFNTEDGAKKFLEDKNLKYKDNDMI 180
Query: 186 LKPKKEFEAERAKE 199
+ ++E+ A++ +E
Sbjct: 181 ILSREEYFAKKNEE 194
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 327 DNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSV 386
DNM REDL ++F G +++IDF GA+ G + F+ A++A A A L +
Sbjct: 240 DNM--TSREDLHALFQTHGEIEWIDFSRGAKEGIVLFK--MNAKEALDKAKAANNDNLKL 295
Query: 387 KNFIAVLEPVTGEAEKEYW-SLLRGNQERHRDVKGEE 422
K E + G+AEKE ++ G QE KG +
Sbjct: 296 KGKNVKWELIEGDAEKEALKKIMEGKQESFNKRKGRD 332
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 1 MASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHL 60
MA+L+ + + Q+E+YF D N+P D+FL+ +I + + V L + F R+
Sbjct: 10 MAALEAK----ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTD 64
Query: 61 GNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIA 117
NV ++A++++ K++ +++S D K+ RS P E E K + R++
Sbjct: 65 FNV--------IVQALSKS--KANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVY 114
Query: 118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176
D +D++ + ++ ++++ R + + F G+ F + + A+K + G
Sbjct: 115 IKGFPTDATLDDIKEWLDDKGQILNIQMRRTL--HKTFKGSIFAVFDSIQSAKKFVDTPG 172
Query: 177 LFYAGVELHLKPKKEFEAERAKETEE 202
Y L + K+++ A++ +E ++
Sbjct: 173 QKYKDTNLLILFKEDYFAKKNEERKQ 198
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 280 ASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTS--IDTYKDNMDVVMREDL 337
A +N+ + KVE K + E + GS E EGK + D D RED
Sbjct: 190 AKKNEERKQSKVEAKLKAKQEHEGRHKPGSTET-RALEGKMGCLLKFSGDLDDQTCREDF 248
Query: 338 KSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397
+F G +K+IDF GA+ G I F+E A+ A A A G L ++N + +
Sbjct: 249 HFLFSNHGEIKWIDFVRGAKEGIILFKEK--AKDALEKARSANNGNLLLRNKKVTWKVLE 306
Query: 398 GEAEKE 403
G AEK+
Sbjct: 307 GHAEKD 312
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 95/195 (48%), Gaps = 17/195 (8%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ Q+E+YF D N+P D+FL+ +I + + V L + F R+ NV
Sbjct: 17 ICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNV-------- 67
Query: 72 TLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVKRE 128
++A++++ K+ +++S D K+ RS P E E K + R++ D +
Sbjct: 68 IVQALSKS--KAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLD 125
Query: 129 DVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-QGLFYAGVELHLK 187
D++ + ++ ++++ R + + F G+ F + + A+K ++ G Y L +
Sbjct: 126 DIKEWLDDKGQILNIQMRRTLH--KTFKGSIFAVFDSIQSAKKFVEIPGQKYKDTNLLIL 183
Query: 188 PKKEFEAERAKETEE 202
K+++ A++ +E ++
Sbjct: 184 FKEDYFAKKNEERKQ 198
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 280 ASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTS--IDTYKDNMDVVMREDL 337
A +N+ + KVE K + E + GS E EGK + D D REDL
Sbjct: 190 AKKNEERKQSKVEAKLKAKQEHEGRHKPGSTET-RALEGKMGCLLKFSGDLDDQTCREDL 248
Query: 338 KSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397
+F G +K++DF GA+ G I F+E A++A A A G L ++N + +
Sbjct: 249 HFLFSNHGEIKWVDFARGAKEGIILFKEK--AKEALEKARNANNGNLLLRNKKVTWKVLE 306
Query: 398 GEAEKE 403
G AEKE
Sbjct: 307 GHAEKE 312
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPED 71
+ RQ+E+YFS N+ D FLRGK+ E + ++LI F+R++ N+ E + +
Sbjct: 219 IKRQIEYYFSVENLERDFFLRGKMDEQ--GFLPISLIAGFQRVQALTTNLNLILEALKDS 276
Query: 72 T-LEAVAETLRK 82
T +E V E +RK
Sbjct: 277 TEVEIVDEKMRK 288
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173
R + T +++ V +DVE FF + +V SVR+P+ + G + +T +DAE L
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHK---GFGYVVMTTNQDAENAL 813
Query: 174 KQGLFYAGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNR 214
AG +L + +K E EK+R + NR
Sbjct: 814 SA----AGKQL---GNRVLNVVLSKPRESLEKTRVSSNDNR 847
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 98 SAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCG 157
+A+ P + Q +T+ A L Y + R D+E FF + +V VRL D F G
Sbjct: 368 NAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRL--SSFDDGSFKG 425
Query: 158 TALIEFSTEEDAEKVLK-QGLFYAGVELHL 186
IEF++ E+A+K L+ G G ++ L
Sbjct: 426 YGHIEFASPEEAQKALEMNGKLLLGRDVRL 455
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 100 ELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTA 159
E P ++ K++ D RT+ A L Y V +++++ F ++ R V+ G A
Sbjct: 381 EKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEI------RLVSKDGKSKGIA 434
Query: 160 LIEFSTEEDAEKVL--KQG---------LFYAG 181
IEF TE DAEK KQG L+Y G
Sbjct: 435 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 467
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 100 ELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTA 159
E P ++ K++ D RT+ A L Y V +++++ F ++ R V+ G A
Sbjct: 379 EKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEI------RLVSKDGKSKGIA 432
Query: 160 LIEFSTEEDAEKVL--KQG---------LFYAG 181
IEF TE DAEK KQG L+Y G
Sbjct: 433 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 465
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 39.3 bits (90), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 98 SAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCG 157
SA+ P +T+ A L ++++R DVE FF + +V VR + D F G
Sbjct: 281 SAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTN-RDDGSFRG 339
Query: 158 TALIEFSTEEDAEKVLK-QGLFYAGVELHL 186
+EF++ E+A+K L+ G G E+ L
Sbjct: 340 FGHVEFASSEEAQKALEFHGRPLLGREIRL 369
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 100 ELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTA 159
E P ++ K++ D RT+ A L Y V +++++ F ++ R V+ G A
Sbjct: 380 EKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEI------RLVSKDGKSKGIA 433
Query: 160 LIEFSTEEDAEKVL--KQG---------LFYAG 181
IEF TE DAEK KQG L+Y G
Sbjct: 434 YIEFKTEADAEKTFEEKQGTEIDGRSISLYYTG 466
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 246 NGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKS 305
+G + P E++C PD + E E+ ++ D K E K E ++++GDK+
Sbjct: 748 SGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVENETDEGDKA 807
Query: 306 SDGSIEKGEEKEGKTSI 322
DG EK EKE + +
Sbjct: 808 QDGENEKNSEKEQDSEV 824
>sp|Q95ZE9|NELFE_DROVI Negative elongation factor E OS=Drosophila virilis GN=Nelf-E PE=3
SV=1
Length = 281
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 332 VMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391
V E LK F+ +GT+ + +I G++ F +PE A +A +A+ G SV +
Sbjct: 176 VTEEFLKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESADRA-----IAEMHGKSVTGIVL 230
Query: 392 VLE---------PVTGEAEKEYWSLLRGNQER---HRDVK 419
++ P+ + WS + ++ + H+D++
Sbjct: 231 QVQLARRQPQIVPINDASSSAVWSSIAASKSQKGSHKDLR 270
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 121 LEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173
L ++ R+ + F++H +V SVR+P H ++ G ++FS EDA+K L
Sbjct: 274 LSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP-KGFGYVQFSNMEDAKKAL 325
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 100 ELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTA 159
E P + K+ RT+ A L +++ ++++ F V++ R V+ G A
Sbjct: 383 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEI------RLVSQDGRSKGIA 436
Query: 160 LIEFSTEEDAEKVL--KQG---------LFYAG 181
IEF +E DAEK L KQG L+Y G
Sbjct: 437 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 469
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 246 NGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKS 305
+G + P E++C PD + E E+ ++ D K E K E +S++GDK
Sbjct: 747 SGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKMETDPDGQQPEKAENKVENESDEGDKI 806
Query: 306 SDGSIEKGEEKEGKTSI 322
D EK EKE + +
Sbjct: 807 QDRENEKNTEKEQDSDV 823
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,419,783
Number of Sequences: 539616
Number of extensions: 8011235
Number of successful extensions: 47877
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 1070
Number of HSP's that attempted gapping in prelim test: 33063
Number of HSP's gapped (non-prelim): 6876
length of query: 498
length of database: 191,569,459
effective HSP length: 122
effective length of query: 376
effective length of database: 125,736,307
effective search space: 47276851432
effective search space used: 47276851432
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)