Query 043731
Match_columns 498
No_of_seqs 298 out of 2146
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 4.4E-32 9.5E-37 297.6 19.7 308 115-466 2-333 (562)
2 KOG1855 Predicted RNA-binding 100.0 3.2E-30 6.9E-35 262.0 10.2 159 3-175 135-305 (484)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.3E-28 5.1E-33 252.1 19.5 224 113-465 3-317 (352)
4 KOG0123 Polyadenylate-binding 100.0 4.3E-28 9.3E-33 252.3 14.7 293 114-465 2-317 (369)
5 cd08030 LA_like_plant La-motif 99.9 5.1E-28 1.1E-32 201.7 5.9 89 9-97 2-90 (90)
6 cd08032 LARP_7 La RNA-binding 99.9 7.6E-28 1.6E-32 197.7 6.7 80 6-97 3-82 (82)
7 cd08033 LARP_6 La RNA-binding 99.9 2.5E-27 5.5E-32 192.7 5.8 76 10-97 2-77 (77)
8 cd08036 LARP_5 La RNA-binding 99.9 7.2E-27 1.6E-31 186.5 4.9 74 10-97 2-75 (75)
9 cd08035 LARP_4 La RNA-binding 99.9 7.9E-27 1.7E-31 187.6 5.2 74 10-97 2-75 (75)
10 cd08029 LA_like_fungal La-moti 99.9 1.3E-26 2.9E-31 188.3 5.8 75 10-97 2-76 (76)
11 smart00715 LA Domain in the RN 99.9 1.8E-26 3.9E-31 189.6 5.7 80 6-98 1-80 (80)
12 cd08028 LARP_3 La RNA-binding 99.9 2.8E-26 6E-31 188.8 6.1 79 6-97 2-82 (82)
13 KOG4213 RNA-binding protein La 99.9 3.1E-26 6.8E-31 209.6 5.8 167 6-188 11-183 (205)
14 KOG0127 Nucleolar protein fibr 99.9 3.5E-24 7.7E-29 223.1 21.0 280 112-436 116-415 (678)
15 cd08031 LARP_4_5_like La RNA-b 99.9 5E-26 1.1E-30 184.2 5.3 74 10-97 2-75 (75)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.2E-24 1.8E-28 228.4 18.2 227 113-466 2-320 (481)
17 cd08038 LARP_2 La RNA-binding 99.9 8E-25 1.7E-29 175.5 5.4 69 10-92 2-70 (73)
18 cd08037 LARP_1 La RNA-binding 99.9 9.3E-25 2E-29 175.1 5.1 69 10-92 2-70 (73)
19 cd08034 LARP_1_2 La RNA-bindin 99.9 1.2E-24 2.6E-29 175.1 5.3 72 10-97 2-73 (73)
20 TIGR01659 sex-lethal sex-letha 99.9 4E-23 8.7E-28 213.8 18.1 161 110-398 104-274 (346)
21 cd07323 LAM LA motif RNA-bindi 99.9 3.4E-24 7.4E-29 174.2 5.7 74 10-97 2-75 (75)
22 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-22 2.8E-27 216.9 19.3 172 110-397 86-264 (457)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.5E-22 9.7E-27 214.9 21.5 172 319-497 274-479 (481)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.8E-22 1.9E-26 203.2 22.0 286 71-401 53-351 (352)
25 TIGR01648 hnRNP-R-Q heterogene 99.9 4.5E-22 9.7E-27 216.6 19.2 210 111-465 56-275 (578)
26 TIGR01645 half-pint poly-U bin 99.9 2.5E-22 5.4E-27 219.0 16.4 172 112-400 106-285 (612)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-21 2.7E-26 212.0 17.6 251 110-466 172-471 (509)
28 TIGR01628 PABP-1234 polyadenyl 99.9 7.8E-21 1.7E-25 208.7 22.2 221 71-403 137-368 (562)
29 PF05383 La: La domain; Inter 99.8 3.8E-22 8.1E-27 155.9 3.9 61 12-83 1-61 (61)
30 KOG0127 Nucleolar protein fibr 99.8 5.5E-20 1.2E-24 192.1 15.1 251 113-465 5-340 (678)
31 KOG0148 Apoptosis-promoting RN 99.8 7.6E-20 1.7E-24 177.4 14.6 170 113-394 62-233 (321)
32 KOG2591 c-Mpl binding protein, 99.8 6.4E-20 1.4E-24 191.7 10.2 151 3-187 91-247 (684)
33 KOG0117 Heterogeneous nuclear 99.8 1.3E-18 2.8E-23 178.5 19.2 247 111-407 81-339 (506)
34 TIGR01648 hnRNP-R-Q heterogene 99.8 1.1E-18 2.4E-23 190.2 18.7 202 70-406 106-314 (578)
35 KOG0145 RNA-binding protein EL 99.8 4.9E-19 1.1E-23 170.8 12.8 228 112-468 40-329 (360)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.8 9.4E-18 2E-22 181.7 21.5 185 112-397 294-500 (509)
37 PF08777 RRM_3: RNA binding mo 99.8 1.4E-18 3E-23 150.5 7.6 97 322-418 3-99 (105)
38 TIGR01622 SF-CC1 splicing fact 99.8 6.2E-17 1.3E-21 173.2 21.1 79 113-192 186-266 (457)
39 KOG0131 Splicing factor 3b, su 99.7 3.8E-17 8.2E-22 150.9 10.9 160 112-398 8-176 (203)
40 KOG0144 RNA-binding protein CU 99.7 3.5E-17 7.5E-22 167.4 11.2 168 110-403 31-210 (510)
41 TIGR01645 half-pint poly-U bin 99.7 5.5E-15 1.2E-19 161.8 24.9 122 68-190 154-282 (612)
42 KOG0110 RNA-binding protein (R 99.7 5.9E-16 1.3E-20 166.7 14.5 293 109-489 381-689 (725)
43 KOG0123 Polyadenylate-binding 99.6 5E-15 1.1E-19 154.7 14.8 308 40-403 23-353 (369)
44 TIGR01659 sex-lethal sex-letha 99.6 1.3E-15 2.7E-20 158.1 10.1 129 320-466 107-242 (346)
45 COG5193 LHP1 La protein, small 99.6 2.3E-16 4.9E-21 160.6 3.5 180 12-204 75-293 (438)
46 KOG0145 RNA-binding protein EL 99.6 1.7E-14 3.7E-19 139.6 15.7 256 70-398 90-357 (360)
47 KOG0110 RNA-binding protein (R 99.6 1.5E-14 3.3E-19 155.9 14.6 175 115-407 517-701 (725)
48 KOG0147 Transcriptional coacti 99.6 3E-15 6.5E-20 157.6 8.9 176 109-398 175-357 (549)
49 KOG4205 RNA-binding protein mu 99.5 1.5E-14 3.2E-19 147.0 9.2 169 112-403 5-180 (311)
50 KOG0124 Polypyrimidine tract-b 99.5 4.9E-14 1.1E-18 141.7 11.3 167 113-396 113-287 (544)
51 KOG0109 RNA-binding protein LA 99.5 6.3E-14 1.4E-18 137.7 10.3 144 115-398 4-149 (346)
52 KOG0148 Apoptosis-promoting RN 99.5 1.2E-13 2.7E-18 134.6 10.4 133 322-465 64-206 (321)
53 PLN03134 glycine-rich RNA-bind 99.4 3.8E-13 8.2E-18 123.1 9.9 78 112-190 33-112 (144)
54 KOG0105 Alternative splicing f 99.4 3.2E-12 6.9E-17 118.7 15.8 182 111-396 4-187 (241)
55 PF00076 RRM_1: RNA recognitio 99.4 1E-12 2.2E-17 103.2 8.1 68 116-185 1-70 (70)
56 KOG0144 RNA-binding protein CU 99.4 9.4E-13 2E-17 135.2 7.7 130 320-465 34-171 (510)
57 KOG1548 Transcription elongati 99.3 1.4E-11 3E-16 123.8 13.1 192 111-398 132-351 (382)
58 PLN03120 nucleic acid binding 99.3 5.6E-12 1.2E-16 124.5 9.2 78 112-193 3-81 (260)
59 KOG0147 Transcriptional coacti 99.3 1.9E-11 4E-16 129.3 13.0 78 113-191 278-357 (549)
60 KOG4211 Splicing factor hnRNP- 99.3 1.6E-11 3.5E-16 128.3 11.9 173 112-405 9-188 (510)
61 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 98.6 8.1 68 116-185 1-70 (70)
62 KOG4206 Spliceosomal protein s 99.3 1.8E-10 3.9E-15 110.4 17.2 189 113-377 9-204 (221)
63 KOG0121 Nuclear cap-binding pr 99.3 1.2E-11 2.5E-16 108.8 7.2 84 110-194 33-118 (153)
64 PLN03134 glycine-rich RNA-bind 99.2 7.2E-11 1.6E-15 108.1 9.1 74 320-398 34-113 (144)
65 PF00076 RRM_1: RNA recognitio 99.2 6.8E-11 1.5E-15 92.8 7.4 65 323-392 1-70 (70)
66 PLN03121 nucleic acid binding 99.2 7.2E-11 1.6E-15 115.1 9.1 78 112-193 4-82 (243)
67 KOG0149 Predicted RNA-binding 99.2 3.5E-11 7.5E-16 115.8 6.3 76 113-189 12-88 (247)
68 smart00362 RRM_2 RNA recogniti 99.2 1.7E-10 3.6E-15 89.3 8.7 69 115-186 1-71 (72)
69 KOG0122 Translation initiation 99.1 1.3E-10 2.7E-15 112.4 7.9 79 111-190 187-267 (270)
70 KOG0131 Splicing factor 3b, su 99.1 1.3E-10 2.7E-15 108.0 6.8 129 321-465 10-145 (203)
71 KOG1457 RNA binding protein (c 99.1 1.8E-09 4E-14 103.1 14.5 78 112-189 33-115 (284)
72 PLN03213 repressor of silencin 99.1 3.6E-10 7.8E-15 117.9 9.8 87 111-202 8-99 (759)
73 KOG0106 Alternative splicing f 99.1 2.6E-10 5.6E-15 110.1 7.0 170 114-401 2-173 (216)
74 KOG0113 U1 small nuclear ribon 99.1 3.6E-10 7.8E-15 111.9 8.0 77 111-188 99-177 (335)
75 smart00360 RRM RNA recognition 99.1 6.4E-10 1.4E-14 85.6 7.9 68 118-186 1-70 (71)
76 KOG4212 RNA-binding protein hn 99.0 6E-09 1.3E-13 107.6 16.2 77 111-189 42-121 (608)
77 cd00590 RRM RRM (RNA recogniti 99.0 1.2E-09 2.7E-14 84.8 8.9 71 115-187 1-73 (74)
78 KOG0125 Ataxin 2-binding prote 99.0 3.2E-10 6.9E-15 113.5 6.0 77 111-190 94-172 (376)
79 COG0724 RNA-binding proteins ( 99.0 8.8E-10 1.9E-14 106.2 9.0 77 113-190 115-193 (306)
80 KOG0107 Alternative splicing f 99.0 6.6E-10 1.4E-14 102.7 6.7 72 113-190 10-83 (195)
81 KOG0114 Predicted RNA-binding 99.0 3.7E-09 8.1E-14 90.0 10.5 75 112-190 17-93 (124)
82 PF14259 RRM_6: RNA recognitio 99.0 2E-09 4.4E-14 85.3 8.4 65 323-392 1-70 (70)
83 KOG4207 Predicted splicing fac 99.0 6E-10 1.3E-14 105.3 5.9 76 113-189 13-90 (256)
84 smart00362 RRM_2 RNA recogniti 99.0 2.6E-09 5.5E-14 82.6 8.2 66 323-393 2-71 (72)
85 PLN03120 nucleic acid binding 99.0 1.9E-09 4.1E-14 106.7 8.7 71 321-397 5-78 (260)
86 COG0724 RNA-binding proteins ( 98.9 3.4E-09 7.3E-14 102.1 9.0 139 320-463 115-271 (306)
87 KOG0126 Predicted RNA-binding 98.9 1.6E-10 3.5E-15 107.3 -0.8 83 112-195 34-118 (219)
88 KOG0107 Alternative splicing f 98.9 2.3E-09 5E-14 99.2 6.6 77 320-401 10-87 (195)
89 KOG0124 Polypyrimidine tract-b 98.9 2.3E-09 5E-14 108.5 6.9 137 322-466 115-259 (544)
90 KOG0146 RNA-binding protein ET 98.8 9.3E-09 2E-13 100.6 8.6 77 111-189 17-98 (371)
91 PLN03121 nucleic acid binding 98.8 8.9E-09 1.9E-13 100.6 8.5 72 321-398 6-80 (243)
92 KOG0114 Predicted RNA-binding 98.8 2E-08 4.3E-13 85.7 9.4 80 320-404 18-100 (124)
93 KOG0108 mRNA cleavage and poly 98.8 7.7E-09 1.7E-13 109.8 8.5 78 114-192 19-98 (435)
94 PLN03213 repressor of silencin 98.8 1.1E-08 2.3E-13 107.1 8.8 120 321-449 11-135 (759)
95 PF13893 RRM_5: RNA recognitio 98.8 3.8E-08 8.3E-13 75.0 8.4 54 337-395 1-55 (56)
96 smart00360 RRM RNA recognition 98.8 2.8E-08 6E-13 76.3 7.4 64 325-393 1-70 (71)
97 KOG0130 RNA-binding protein RB 98.7 1.4E-08 3E-13 90.4 5.6 79 110-189 69-149 (170)
98 PF13893 RRM_5: RNA recognitio 98.7 4.2E-08 9E-13 74.8 7.5 54 130-189 1-56 (56)
99 KOG0125 Ataxin 2-binding prote 98.7 2.4E-08 5.1E-13 100.3 7.4 74 321-399 97-174 (376)
100 KOG0111 Cyclophilin-type pepti 98.7 1.2E-08 2.6E-13 97.4 4.5 79 111-190 8-88 (298)
101 smart00361 RRM_1 RNA recogniti 98.7 4.7E-08 1E-12 78.2 7.1 60 127-186 2-69 (70)
102 cd00590 RRM RRM (RNA recogniti 98.7 9.3E-08 2E-12 74.1 8.6 67 323-394 2-73 (74)
103 KOG0149 Predicted RNA-binding 98.7 2E-08 4.2E-13 97.0 5.5 75 316-396 8-88 (247)
104 KOG0109 RNA-binding protein LA 98.7 4.5E-08 9.8E-13 96.9 7.2 114 322-464 4-117 (346)
105 KOG1190 Polypyrimidine tract-b 98.6 2.3E-07 5.1E-12 95.5 11.9 188 112-395 27-222 (492)
106 KOG0117 Heterogeneous nuclear 98.6 1.2E-07 2.6E-12 98.6 8.5 152 28-196 179-335 (506)
107 KOG0120 Splicing factor U2AF, 98.6 2.2E-07 4.7E-12 99.7 10.3 77 112-189 288-366 (500)
108 KOG4207 Predicted splicing fac 98.6 5.6E-08 1.2E-12 92.2 5.0 70 322-396 15-90 (256)
109 KOG4212 RNA-binding protein hn 98.5 3.7E-07 8E-12 94.6 9.6 134 320-465 44-183 (608)
110 KOG0153 Predicted RNA-binding 98.5 1.9E-07 4.2E-12 94.5 6.6 76 109-191 224-302 (377)
111 KOG4205 RNA-binding protein mu 98.5 1E-07 2.2E-12 97.4 4.2 77 112-189 96-173 (311)
112 KOG0121 Nuclear cap-binding pr 98.4 5.6E-07 1.2E-11 79.6 5.9 83 319-406 35-123 (153)
113 COG5193 LHP1 La protein, small 98.3 1.6E-07 3.4E-12 96.7 1.9 60 9-82 271-330 (438)
114 KOG0113 U1 small nuclear ribon 98.3 1.1E-06 2.4E-11 87.5 7.7 83 318-406 99-187 (335)
115 KOG0122 Translation initiation 98.3 1.5E-06 3.2E-11 84.5 7.3 71 322-397 191-267 (270)
116 KOG0153 Predicted RNA-binding 98.3 1.4E-06 3E-11 88.4 7.2 70 321-394 229-298 (377)
117 KOG0132 RNA polymerase II C-te 98.3 1.3E-06 2.8E-11 96.0 7.1 74 110-190 418-493 (894)
118 smart00361 RRM_1 RNA recogniti 98.3 2.3E-06 5E-11 68.4 6.6 55 334-393 2-69 (70)
119 KOG0116 RasGAP SH3 binding pro 98.3 1.3E-06 2.8E-11 92.6 6.4 78 113-191 288-366 (419)
120 KOG0129 Predicted RNA-binding 98.3 1.7E-05 3.8E-10 84.2 14.6 167 109-376 255-433 (520)
121 KOG4208 Nucleolar RNA-binding 98.3 1.9E-06 4E-11 82.0 6.7 77 111-188 47-126 (214)
122 KOG2590 RNA-binding protein LA 98.3 2.9E-07 6.3E-12 97.6 1.4 63 9-90 301-363 (448)
123 KOG4209 Splicing factor RNPS1, 98.2 1.5E-06 3.2E-11 85.6 5.6 82 108-190 96-178 (231)
124 KOG1190 Polypyrimidine tract-b 98.2 9.6E-06 2.1E-10 83.8 11.1 73 113-191 297-372 (492)
125 KOG0105 Alternative splicing f 98.2 1.8E-06 4E-11 80.7 5.0 126 322-453 8-150 (241)
126 KOG0128 RNA-binding protein SA 98.2 2E-07 4.4E-12 103.3 -1.8 141 111-395 665-811 (881)
127 KOG0108 mRNA cleavage and poly 98.1 7.1E-06 1.5E-10 87.5 7.5 81 321-406 19-107 (435)
128 KOG1365 RNA-binding protein Fu 98.0 4E-05 8.7E-10 78.8 11.1 79 324-407 284-370 (508)
129 KOG4211 Splicing factor hnRNP- 98.0 9.5E-05 2.1E-09 78.3 13.2 76 112-189 102-179 (510)
130 KOG0415 Predicted peptidyl pro 97.9 1E-05 2.3E-10 82.2 5.5 78 111-189 237-316 (479)
131 KOG0146 RNA-binding protein ET 97.9 7.6E-06 1.6E-10 80.5 3.3 83 107-190 279-363 (371)
132 KOG0132 RNA polymerase II C-te 97.9 2.3E-05 4.9E-10 86.6 7.1 81 321-406 422-506 (894)
133 KOG4661 Hsp27-ERE-TATA-binding 97.8 2.6E-05 5.7E-10 83.3 6.3 77 112-189 404-482 (940)
134 KOG0533 RRM motif-containing p 97.8 4.2E-05 9.2E-10 75.6 7.2 75 113-189 83-159 (243)
135 KOG0112 Large RNA-binding prot 97.8 1.8E-05 3.9E-10 88.6 4.5 158 110-396 369-528 (975)
136 KOG0130 RNA-binding protein RB 97.8 2.6E-05 5.7E-10 69.8 4.7 73 319-396 71-149 (170)
137 KOG0415 Predicted peptidyl pro 97.8 2.6E-05 5.7E-10 79.3 5.0 77 319-400 238-320 (479)
138 KOG0116 RasGAP SH3 binding pro 97.8 2.5E-05 5.4E-10 82.9 4.8 67 322-394 290-362 (419)
139 KOG0126 Predicted RNA-binding 97.7 4.9E-06 1.1E-10 77.8 -0.6 72 321-397 36-113 (219)
140 KOG0111 Cyclophilin-type pepti 97.7 2.8E-05 6.1E-10 74.7 3.5 72 322-398 12-89 (298)
141 KOG1456 Heterogeneous nuclear 97.7 0.00062 1.3E-08 70.1 12.7 143 113-377 31-180 (494)
142 KOG0120 Splicing factor U2AF, 97.6 7.7E-05 1.7E-09 80.4 6.3 187 110-407 172-378 (500)
143 KOG0533 RRM motif-containing p 97.6 0.00014 3.1E-09 71.9 7.1 80 319-403 82-166 (243)
144 KOG4454 RNA binding protein (R 97.5 4.5E-05 9.7E-10 73.4 2.5 74 113-189 9-84 (267)
145 KOG4660 Protein Mei2, essentia 97.5 6.1E-05 1.3E-09 80.8 3.4 70 110-185 72-143 (549)
146 KOG4208 Nucleolar RNA-binding 97.5 0.00033 7.2E-09 66.9 7.7 80 322-406 51-139 (214)
147 KOG4210 Nuclear localization s 97.5 0.00015 3.3E-09 73.7 5.6 177 112-406 87-271 (285)
148 PF04059 RRM_2: RNA recognitio 97.5 0.00031 6.7E-09 60.1 6.5 61 114-175 2-64 (97)
149 KOG4206 Spliceosomal protein s 97.3 0.00041 8.9E-09 67.1 6.1 72 322-398 11-89 (221)
150 KOG0151 Predicted splicing reg 97.2 0.00055 1.2E-08 75.3 6.2 80 110-189 171-254 (877)
151 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00071 1.5E-08 51.4 4.9 52 114-173 2-53 (53)
152 KOG0106 Alternative splicing f 97.1 0.00044 9.6E-09 67.2 4.3 128 322-465 3-139 (216)
153 KOG1456 Heterogeneous nuclear 97.1 0.0071 1.5E-07 62.5 12.9 72 113-190 287-361 (494)
154 PF08777 RRM_3: RNA binding mo 97.0 0.0026 5.5E-08 55.3 7.7 81 115-202 3-95 (105)
155 KOG4454 RNA binding protein (R 97.0 0.00062 1.3E-08 65.7 3.6 117 322-465 11-131 (267)
156 KOG0226 RNA-binding proteins [ 96.9 0.0015 3.2E-08 64.3 5.8 75 111-186 188-264 (290)
157 PF11608 Limkain-b1: Limkain b 96.9 0.0033 7.2E-08 52.2 6.9 65 114-189 3-74 (90)
158 KOG1365 RNA-binding protein Fu 96.8 0.011 2.3E-07 61.3 11.4 72 113-186 60-133 (508)
159 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.002 4.4E-08 69.4 6.1 73 321-398 406-484 (940)
160 KOG0151 Predicted splicing reg 96.7 0.0025 5.4E-08 70.3 6.3 71 319-394 173-252 (877)
161 KOG4210 Nuclear localization s 96.7 0.001 2.2E-08 67.7 2.7 74 113-187 184-259 (285)
162 COG5175 MOT2 Transcriptional r 96.6 0.0037 8.1E-08 63.7 6.3 78 111-188 112-199 (480)
163 KOG0128 RNA-binding protein SA 96.5 0.0018 3.9E-08 72.7 3.6 55 322-376 669-729 (881)
164 KOG1995 Conserved Zn-finger pr 96.5 0.0023 4.9E-08 65.8 3.9 77 111-188 64-150 (351)
165 KOG1548 Transcription elongati 96.2 0.01 2.2E-07 60.9 6.6 135 319-458 133-317 (382)
166 PF11608 Limkain-b1: Limkain b 96.2 0.016 3.5E-07 48.2 6.5 67 321-396 3-74 (90)
167 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.01 2.2E-07 45.1 4.2 47 326-373 7-53 (53)
168 KOG4660 Protein Mei2, essentia 96.0 0.0038 8.3E-08 67.4 2.5 66 322-392 77-143 (549)
169 COG5175 MOT2 Transcriptional r 95.9 0.013 2.8E-07 59.8 5.7 72 321-397 115-201 (480)
170 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.036 7.9E-07 47.8 7.6 78 111-189 4-89 (100)
171 KOG0226 RNA-binding proteins [ 95.8 0.011 2.3E-07 58.5 4.3 71 322-397 192-268 (290)
172 KOG4209 Splicing factor RNPS1, 95.8 0.0098 2.1E-07 58.8 4.1 70 320-395 101-176 (231)
173 KOG0129 Predicted RNA-binding 95.7 0.026 5.5E-07 60.7 7.2 63 112-175 369-432 (520)
174 KOG4676 Splicing factor, argin 95.7 0.017 3.6E-07 60.1 5.5 77 114-190 8-87 (479)
175 KOG1457 RNA binding protein (c 95.6 0.011 2.3E-07 57.5 3.6 64 114-185 211-274 (284)
176 KOG2314 Translation initiation 95.6 0.02 4.3E-07 62.0 5.9 79 112-192 57-144 (698)
177 KOG4307 RNA binding protein RB 95.5 0.034 7.4E-07 61.6 7.2 72 112-185 866-940 (944)
178 PF04059 RRM_2: RNA recognitio 95.2 0.087 1.9E-06 45.2 7.4 57 321-377 2-66 (97)
179 KOG3152 TBP-binding protein, a 94.8 0.012 2.6E-07 58.1 1.3 72 322-398 76-173 (278)
180 KOG1855 Predicted RNA-binding 94.4 0.034 7.4E-07 58.5 3.4 58 320-377 231-307 (484)
181 KOG4849 mRNA cleavage factor I 94.3 0.094 2E-06 54.0 6.2 77 112-189 79-159 (498)
182 PF08952 DUF1866: Domain of un 94.0 0.19 4.1E-06 46.2 7.0 58 127-193 50-109 (146)
183 KOG2202 U2 snRNP splicing fact 93.8 0.031 6.8E-07 55.3 1.8 60 128-189 83-145 (260)
184 PF08952 DUF1866: Domain of un 93.8 0.22 4.8E-06 45.7 7.1 56 335-398 51-106 (146)
185 KOG4307 RNA binding protein RB 92.9 0.21 4.5E-06 55.6 6.5 80 113-194 434-516 (944)
186 PF05172 Nup35_RRM: Nup53/35/4 92.3 0.67 1.5E-05 40.0 7.6 59 327-392 13-84 (100)
187 KOG3152 TBP-binding protein, a 92.3 0.077 1.7E-06 52.6 2.0 70 113-182 74-156 (278)
188 KOG1995 Conserved Zn-finger pr 92.2 0.098 2.1E-06 54.1 2.7 82 320-406 66-161 (351)
189 PF15023 DUF4523: Protein of u 91.9 0.51 1.1E-05 43.2 6.6 75 110-192 83-162 (166)
190 KOG1996 mRNA splicing factor [ 91.9 0.31 6.8E-06 49.3 5.7 57 334-395 300-363 (378)
191 PF10309 DUF2414: Protein of u 91.7 0.4 8.6E-06 37.8 5.0 50 322-376 7-62 (62)
192 KOG2068 MOT2 transcription fac 91.6 0.077 1.7E-06 54.5 1.1 75 111-185 75-156 (327)
193 KOG2202 U2 snRNP splicing fact 89.9 0.17 3.6E-06 50.3 1.7 57 335-396 83-145 (260)
194 KOG0115 RNA-binding protein p5 89.7 0.18 3.8E-06 50.1 1.8 74 322-396 33-111 (275)
195 KOG2193 IGF-II mRNA-binding pr 88.4 0.27 5.8E-06 51.9 2.1 68 324-396 84-154 (584)
196 PF08675 RNA_bind: RNA binding 87.8 1.8 3.8E-05 36.2 6.1 50 324-377 12-63 (87)
197 KOG2591 c-Mpl binding protein, 87.7 0.7 1.5E-05 50.4 4.7 73 319-395 174-248 (684)
198 KOG0115 RNA-binding protein p5 87.6 0.41 8.8E-06 47.6 2.7 75 114-190 32-112 (275)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 87.0 1 2.2E-05 42.7 5.0 64 111-175 5-74 (176)
200 KOG2193 IGF-II mRNA-binding pr 86.9 0.55 1.2E-05 49.7 3.3 116 322-455 3-118 (584)
201 PF08675 RNA_bind: RNA binding 86.7 1.9 4.2E-05 36.0 5.7 51 116-175 11-61 (87)
202 PF10309 DUF2414: Protein of u 86.5 2.4 5.2E-05 33.4 5.9 53 113-174 5-60 (62)
203 KOG2135 Proteins containing th 86.3 0.41 8.9E-06 51.3 2.1 75 110-191 369-445 (526)
204 KOG2314 Translation initiation 85.8 1 2.2E-05 49.3 4.7 77 318-398 56-143 (698)
205 PF15023 DUF4523: Protein of u 85.4 1.4 3.1E-05 40.4 4.7 48 326-377 96-146 (166)
206 PF07576 BRAP2: BRCA1-associat 83.6 4.1 8.9E-05 35.8 6.7 64 115-184 15-79 (110)
207 PF09421 FRQ: Frequency clock 83.4 1.2 2.6E-05 51.9 4.2 48 37-96 473-521 (989)
208 KOG2068 MOT2 transcription fac 80.6 0.76 1.6E-05 47.4 1.2 81 321-406 78-170 (327)
209 KOG1996 mRNA splicing factor [ 79.9 4 8.7E-05 41.5 5.9 60 127-186 300-361 (378)
210 PF03467 Smg4_UPF3: Smg-4/UPF3 79.1 2.3 5E-05 40.3 3.9 55 322-376 9-75 (176)
211 KOG4285 Mitotic phosphoprotein 78.4 5.8 0.00013 40.6 6.6 70 114-191 198-269 (350)
212 KOG4285 Mitotic phosphoprotein 78.1 4.8 0.0001 41.2 5.9 60 336-401 212-272 (350)
213 KOG0112 Large RNA-binding prot 73.0 4.1 8.8E-05 47.1 4.3 72 111-189 453-528 (975)
214 KOG2416 Acinus (induces apopto 68.3 4 8.7E-05 45.2 2.9 71 111-188 442-518 (718)
215 KOG2135 Proteins containing th 65.9 2.9 6.3E-05 45.0 1.2 59 332-396 385-443 (526)
216 PF11767 SET_assoc: Histone ly 64.9 22 0.00048 28.3 5.8 56 330-393 10-65 (66)
217 KOG0804 Cytoplasmic Zn-finger 62.4 13 0.00028 40.0 5.2 67 111-183 72-139 (493)
218 KOG4676 Splicing factor, argin 60.4 11 0.00024 39.9 4.2 70 322-397 9-87 (479)
219 PF04847 Calcipressin: Calcipr 58.4 26 0.00056 33.6 6.1 61 333-396 8-68 (184)
220 KOG2278 RNA:NAD 2'-phosphotran 57.5 11 0.00024 35.6 3.3 47 39-97 31-81 (207)
221 KOG4574 RNA-binding protein (c 53.7 7.6 0.00017 44.7 1.9 65 118-189 303-371 (1007)
222 PF04847 Calcipressin: Calcipr 45.0 56 0.0012 31.3 6.1 57 126-189 8-68 (184)
223 KOG2253 U1 snRNP complex, subu 42.8 12 0.00026 42.1 1.3 69 319-395 39-107 (668)
224 PF03880 DbpA: DbpA RNA bindin 41.7 1.1E+02 0.0024 24.4 6.5 59 330-396 11-74 (74)
225 cd04908 ACT_Bt0572_1 N-termina 39.6 45 0.00099 25.6 3.8 41 335-376 16-57 (66)
226 PF01885 PTS_2-RNA: RNA 2'-pho 34.4 51 0.0011 31.6 4.0 49 39-99 29-82 (186)
227 KOG2253 U1 snRNP complex, subu 33.5 31 0.00066 38.9 2.6 67 112-188 39-107 (668)
228 PRK14548 50S ribosomal protein 32.1 81 0.0018 26.3 4.3 49 328-376 28-81 (84)
229 KOG4574 RNA-binding protein (c 31.8 33 0.00072 39.8 2.6 69 323-394 301-369 (1007)
230 KOG2891 Surface glycoprotein [ 30.9 12 0.00025 38.0 -1.0 23 332-354 173-195 (445)
231 PF00403 HMA: Heavy-metal-asso 29.5 2.4E+02 0.0052 21.0 6.7 53 323-375 2-58 (62)
232 PF03468 XS: XS domain; Inter 29.1 39 0.00085 29.9 2.1 56 115-174 10-75 (116)
233 PRK00819 RNA 2'-phosphotransfe 26.2 89 0.0019 29.8 4.1 46 39-98 30-77 (179)
234 TIGR03636 L23_arch archaeal ri 25.9 1.3E+02 0.0027 24.8 4.4 48 328-375 21-73 (77)
235 PF07292 NID: Nmi/IFP 35 domai 25.3 46 0.00099 28.1 1.7 26 109-134 48-73 (88)
236 PTZ00191 60S ribosomal protein 25.0 1.5E+02 0.0033 27.4 5.1 50 321-372 84-138 (145)
237 PF15513 DUF4651: Domain of un 22.7 1.4E+02 0.0031 23.6 3.8 21 127-147 8-28 (62)
238 PF02714 DUF221: Domain of unk 22.6 64 0.0014 32.9 2.6 31 159-189 1-31 (325)
239 PF07530 PRE_C2HC: Associated 21.9 1.1E+02 0.0023 24.5 3.2 60 128-189 2-62 (68)
240 KOG2891 Surface glycoprotein [ 21.7 69 0.0015 32.6 2.4 34 113-146 149-194 (445)
241 PF08544 GHMP_kinases_C: GHMP 20.8 2.8E+02 0.0061 21.8 5.6 42 335-377 37-80 (85)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.4e-32 Score=297.56 Aligned_cols=308 Identities=19% Similarity=0.189 Sum_probs=211.8
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc-h
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK-E 191 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~-d 191 (498)
+|||+|||.++|+++|+++|++||.|.+|+|+++.. +++++|||||+|.+.++|++|+.. ...++|+.|+|+|.. +
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~-t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV-TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 799999999999999999999999999999999976 678999999999999999999985 677999999999863 2
Q ss_pred hHHHHHHhHHHH-hhcCccccCCccCCCCCccCC-CCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 192 FEAERAKETEEF-EKSRPAVGSNRKNNSNAEADY-PKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 192 ~~~~k~~~~~~~-~~~~~~~~k~~~~~~~~~~~~-~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
...++.....-| .++.. ..+.+.+...+ ..|.++++++... ..|.++ .-+-..=.+
T Consensus 81 ~~~~~~~~~~vfV~nLp~-----~~~~~~L~~~F~~~G~i~~~~i~~~-------~~g~sk----------g~afV~F~~ 138 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDK-----SVDNKALFDTFSKFGNILSCKVATD-------ENGKSR----------GYGFVHFEK 138 (562)
T ss_pred ccccccCCCceEEcCCCc-----cCCHHHHHHHHHhcCCcceeEeeec-------CCCCcc----------cEEEEEECC
Confidence 221111111111 01100 00000011111 3456666644211 111111 000000000
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccc----cCcceeeeccCCCccccHHHHHHHhccCC
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEK----EGKTSIDTYKDNMDVVMREDLKSVFHKFG 345 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~----~~~~~~vfv~nL~~~vt~EdLke~F~~fG 345 (498)
.+++..-.++ .+++.+ .++.+.++.+....++ .....++||+||+..+|+++|+++|++||
T Consensus 139 ~e~A~~Ai~~----------lng~~~-----~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG 203 (562)
T TIGR01628 139 EESAKAAIQK----------VNGMLL-----NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG 203 (562)
T ss_pred HHHHHHHHHH----------hcccEe-----cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcC
Confidence 1111111211 111111 1222222222222222 22455799999999999999999999999
Q ss_pred ceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEec----CeEEEEEEcCChhHHHH-HHH-----Hhh
Q 043731 346 TVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVK----NFIAVLEPVTGEAEKEY-WSL-----LRG 410 (498)
Q Consensus 346 ~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~----g~~~~v~~~~g~~E~e~-~~~-----~~~ 410 (498)
.|.++.+.++ .+.|||+|.+.++|.+|++.++ |..|. |+.+.|..+..+.|++. ++. ...
T Consensus 204 ~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~ 278 (562)
T TIGR01628 204 EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQE 278 (562)
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChhhhHHHHHhhHHhhhhh
Confidence 9999998764 3469999999999999999884 89999 99999999999888862 221 122
Q ss_pred hhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCcccccc
Q 043731 411 NQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVRP 466 (498)
Q Consensus 411 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (498)
...++.+.++|++||+...+++.++++|+.||+|++|++ ++|..|.|+|+|||+=
T Consensus 279 ~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i-~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 279 RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV-MLDEKGVSRGFGFVCF 333 (562)
T ss_pred hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE-EECCCCCcCCeEEEEe
Confidence 334678899999999999999999999999999999999 7788899999999973
No 2
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=99.96 E-value=3.2e-30 Score=261.99 Aligned_cols=159 Identities=35% Similarity=0.514 Sum_probs=144.4
Q ss_pred CCCHHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhh
Q 043731 3 SLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRK 82 (498)
Q Consensus 3 ~~~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~ 82 (498)
-|+|+++.+|.+||||||||.||.+|.||.++|.++.+|||||.+|++|+|||+||. ++..|+.||+.
T Consensus 135 ~lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTr------------d~~~va~ALr~ 202 (484)
T KOG1855|consen 135 ILSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTR------------DWKLVADALRK 202 (484)
T ss_pred cccHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhh------------hhHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999999999999985 89999999999
Q ss_pred cCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccc---cCCC-Cc----
Q 043731 83 SSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRH---VADK-RL---- 154 (498)
Q Consensus 83 S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~---~~~~-~~---- 154 (498)
|..|+||+||+||||..|+|.-+ .+++..|||.+.|||.+-.-+-|.++|+.||.|.+||||.. ..+. +.
T Consensus 203 S~kL~vseDgkKVrRisPlp~~~--~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~ 280 (484)
T KOG1855|consen 203 SSKLEVSEDGKKVRRISPLPEFD--EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKY 280 (484)
T ss_pred cceEEEccCCceeeecCCCCCcc--ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccc
Confidence 99999999999999999998654 35689999999999999999999999999999999999987 2211 11
Q ss_pred ----ccceEEEEeCCHHHHHHHHHh
Q 043731 155 ----FCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 155 ----~kG~aFVeF~s~e~A~kAl~~ 175 (498)
.+-+|+|+|...+.|.+|.+.
T Consensus 281 ~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 281 FELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 145899999999999999984
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.3e-28 Score=252.12 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=176.3
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
..+|||+|||.++|+++|+++|++||+|..|+|++++. +++++|||||+|.++++|.+||.. +..+.|+.|.|.+..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~-~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV-TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC-CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999999875 577999999999999999999984 788888888876532
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
... .
T Consensus 82 ~~~---------------------------------------------~------------------------------- 85 (352)
T TIGR01661 82 PSS---------------------------------------------D------------------------------- 85 (352)
T ss_pred ccc---------------------------------------------c-------------------------------
Confidence 000 0
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
......+||+|||..+++++|+++|++||.|..+
T Consensus 86 ----------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~ 119 (352)
T TIGR01661 86 ----------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITS 119 (352)
T ss_pred ----------------------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEE
Confidence 0001257999999999999999999999999888
Q ss_pred EeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEcCChhHHH--HHHH-Hhhh--------
Q 043731 351 DFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPVTGEAEKE--YWSL-LRGN-------- 411 (498)
Q Consensus 351 ~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~~g~~E~e--~~~~-~~~~-------- 411 (498)
.+... ++.|||+|.+.++|+.|+..|+ |..+.| ..+.+..+....... .+.. ....
T Consensus 120 ~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-----g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (352)
T TIGR01661 120 RILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-----GTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRV 194 (352)
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCC
Confidence 87653 4569999999999999999984 667766 567777664322110 0000 0000
Q ss_pred ---------------------------------------------------------------------hhccccccccc
Q 043731 412 ---------------------------------------------------------------------QERHRDVKGEE 422 (498)
Q Consensus 412 ---------------------------------------------------------------------~~k~~~~~~~~ 422 (498)
.....+..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 274 (352)
T TIGR01661 195 PLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFV 274 (352)
T ss_pred CccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEE
Confidence 00111235999
Q ss_pred hhhhhhhhhhhhhhhcccCCCccceeeeeccC-CCCCCCccccc
Q 043731 423 KHLEAENKAASEKMIQQEDAQIKPGKFEQHEK-PGISSGTSFVR 465 (498)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 465 (498)
.||..+.+++.|+++|+.||.|++|++ ++|+ .|.|+|+|||.
T Consensus 275 ~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~ 317 (352)
T TIGR01661 275 YNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVS 317 (352)
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEE
Confidence 999999999999999999999999999 7776 89999999996
No 4
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.3e-28 Score=252.28 Aligned_cols=293 Identities=20% Similarity=0.199 Sum_probs=223.7
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc-
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK- 190 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~- 190 (498)
.+|||+ +++|+..|.++|+++|+|.+||+||+. + +.|||||+|.++++|++||.. ...++|++|++||+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~--t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA--T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC--C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 368999 899999999999999999999999996 3 899999999999999999996 678999999999983
Q ss_pred hhHHHHHHhHHHH-hhcCccccCCccCCCCCccCC-CCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 191 EFEAERAKETEEF-EKSRPAVGSNRKNNSNAEADY-PKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 191 d~~~~k~~~~~~~-~~~~~~~~k~~~~~~~~~~~~-~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
+... .+ +++.+ ..+++.....+ ..|.||+|++..... | ++ .- -.-=.
T Consensus 75 d~~~-------~~i~nl~~-----~~~~~~~~d~f~~~g~ilS~kv~~~~~-------g-~k----------g~-FV~f~ 123 (369)
T KOG0123|consen 75 DPSL-------VFIKNLDE-----SIDNKSLYDTFSEFGNILSCKVATDEN-------G-SK----------GY-FVQFE 123 (369)
T ss_pred CCce-------eeecCCCc-----ccCcHHHHHHHHhhcCeeEEEEEEcCC-------C-ce----------ee-EEEeC
Confidence 2221 22 22222 12223333333 688999998743322 1 11 00 00001
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCccccccccc-------CcceeeeccCCCccccHHHHHHHh
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKE-------GKTSIDTYKDNMDVVMREDLKSVF 341 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~-------~~~~~vfv~nL~~~vt~EdLke~F 341 (498)
+++++...+++ .+++.. .+++..+|.+....++. ...++++++|++..++.+.|++.|
T Consensus 124 ~e~~a~~ai~~----------~ng~ll-----~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f 188 (369)
T KOG0123|consen 124 SEESAKKAIEK----------LNGMLL-----NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF 188 (369)
T ss_pred CHHHHHHHHHH----------hcCccc-----CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhh
Confidence 12333333332 444432 56667777776544443 234579999999999999999999
Q ss_pred ccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHH-HHH-----HHhh
Q 043731 342 HKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKE-YWS-----LLRG 410 (498)
Q Consensus 342 ~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e-~~~-----~~~~ 410 (498)
+.||.|..+.+++. ++.|||+|+++++|.+|+..++ |...++..+.|..++.+.|+. .++ ....
T Consensus 189 ~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~ 263 (369)
T KOG0123|consen 189 SAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREAELKRKFEQEFAK 263 (369)
T ss_pred cccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHHHHhhhhHhhhhh
Confidence 99999999998863 4569999999999999999984 888999999999999977776 222 4445
Q ss_pred hhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 411 NQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 411 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
....++..++|++|++....++.++.+|+.+|+|+++++ |.+.+|.|+|+|||+
T Consensus 264 ~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv-~~~~~g~skG~gfV~ 317 (369)
T KOG0123|consen 264 RSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKV-MVDENGKSKGFGFVE 317 (369)
T ss_pred ccccccccccccccCccccchhHHHHHHhcccceeeEEE-EeccCCCccceEEEE
Confidence 555788999999999999999999999999999999999 777789999999997
No 5
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=5.1e-28 Score=201.70 Aligned_cols=89 Identities=65% Similarity=0.996 Sum_probs=82.6
Q ss_pred HHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCccee
Q 043731 9 AQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKL 88 (498)
Q Consensus 9 ~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leV 88 (498)
+++|++||||||||+||++|+||+++|.++++|||||++|++|+|||+|+......++++|+++++.|++||+.|+.|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 57999999999999999999999999998899999999999999999999765555667777789999999999999999
Q ss_pred ecCcceeec
Q 043731 89 SEDGMKVGR 97 (498)
Q Consensus 89 sedg~kVrR 97 (498)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 6
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.94 E-value=7.6e-28 Score=197.68 Aligned_cols=80 Identities=31% Similarity=0.598 Sum_probs=76.5
Q ss_pred HHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCc
Q 043731 6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSS 85 (498)
Q Consensus 6 ~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~ 85 (498)
.++..+|++||||||||+||++|+||+++|.++++|||||++|++|+|||+|+. +++.|++||+.|+.
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~------------d~~~i~~Al~~S~~ 70 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTT------------DGKLIARALKNSSV 70 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcC------------CHHHHHHHHhcCCE
Confidence 468899999999999999999999999999988999999999999999999984 67899999999999
Q ss_pred ceeecCcceeec
Q 043731 86 LKLSEDGMKVGR 97 (498)
Q Consensus 86 leVsedg~kVrR 97 (498)
|+|++||++|||
T Consensus 71 lev~ed~~~VRR 82 (82)
T cd08032 71 VELNLEGTRIRR 82 (82)
T ss_pred EEEcCCCCccCC
Confidence 999999999997
No 7
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=2.5e-27 Score=192.66 Aligned_cols=76 Identities=43% Similarity=0.682 Sum_probs=73.1
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++|.++++|||||++|++|+|||+++. +++.|++||+.|+.|+|+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~------------d~~~I~~Al~~S~~lev~ 69 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTR------------DWRVVAAALRRSSKLVVS 69 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcC------------CHHHHHHHHHhCCeEEEc
Confidence 68999999999999999999999999888999999999999999999984 789999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+||++|||
T Consensus 70 ~d~~~VRR 77 (77)
T cd08033 70 EDGKKVRR 77 (77)
T ss_pred CCCCccCC
Confidence 99999998
No 8
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=7.2e-27 Score=186.50 Aligned_cols=74 Identities=22% Similarity=0.434 Sum_probs=70.6
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
+.|++||||||||.||++|.||+++|+ ++|||||++|++|+|||+||. |++.|++||+.|+.|+||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~md--~~g~Vpi~~ia~F~rik~Lt~------------D~~lI~~aL~~S~~vevs 67 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQMD--SDQYVPIMTVANLDHIKKLST------------DVDLIVDVLRSLPLVQVD 67 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHhc--cCCCEehHHHhccHHHHHhcC------------CHHHHHHHHhhCCeEEEC
Confidence 579999999999999999999999998 799999999999999999984 799999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
++|++||.
T Consensus 68 e~g~kVRp 75 (75)
T cd08036 68 EKGEKVRP 75 (75)
T ss_pred CCCCccCc
Confidence 99999983
No 9
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=7.9e-27 Score=187.62 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=70.7
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||.||++|.||+++|+ ++|||||++|++|+|||+++. +++.|++||+.|+.|+|+
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~md--~~G~Vpi~~iasF~rik~lt~------------d~~~I~~AL~~S~~levs 67 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQMD--SDQFVPIWTVANMEGIKKLTT------------DMDLILDVLRSSPMVQVD 67 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhhC--cCCCEehHHHhccHHHHHhcC------------CHHHHHHHHHcCCeEEEc
Confidence 689999999999999999999999997 799999999999999999984 789999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+||++||.
T Consensus 68 edg~kVRp 75 (75)
T cd08035 68 ETGEKVRP 75 (75)
T ss_pred CCCCccCc
Confidence 99999984
No 10
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.3e-26 Score=188.27 Aligned_cols=75 Identities=51% Similarity=0.744 Sum_probs=71.3
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++|.++++|||||++|++|+|||+|+. .+.|++||+.|+.|+|+
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~-------------~~~i~~Al~~S~~lev~ 68 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQP-------------LEAVVEALRESELLEVS 68 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCC-------------HHHHHHHHHhCCeEEEe
Confidence 58999999999999999999999999888999999999999999999972 38999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+||++|||
T Consensus 69 ~d~~~VRR 76 (76)
T cd08029 69 EDGENVRR 76 (76)
T ss_pred CCCCcccC
Confidence 99999998
No 11
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.93 E-value=1.8e-26 Score=189.55 Aligned_cols=80 Identities=46% Similarity=0.762 Sum_probs=75.5
Q ss_pred HHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCc
Q 043731 6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSS 85 (498)
Q Consensus 6 ~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~ 85 (498)
+++.++|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+++. +++.|++||+.|+.
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~------------d~~~i~~Al~~S~~ 67 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTT------------DVNLIVEALRSSPK 67 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcC------------CHHHHHHHHHhCCe
Confidence 367899999999999999999999999999976 99999999999999999984 68999999999999
Q ss_pred ceeecCcceeecc
Q 043731 86 LKLSEDGMKVGRS 98 (498)
Q Consensus 86 leVsedg~kVrR~ 98 (498)
|+|++||++|||.
T Consensus 68 lel~~d~~~VRR~ 80 (80)
T smart00715 68 LEVSEDGLKVRRR 80 (80)
T ss_pred EEEcCCCCeeCcC
Confidence 9999999999984
No 12
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.93 E-value=2.8e-26 Score=188.78 Aligned_cols=79 Identities=35% Similarity=0.682 Sum_probs=74.1
Q ss_pred HHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcC-
Q 043731 6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSS- 84 (498)
Q Consensus 6 ~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~- 84 (498)
+++..+|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+++. +++.|++||+.|+
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~------------d~~~i~~Al~~S~~ 68 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSS------------DPEVIAKALKKSKS 68 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcC------------CHHHHHHHHHhCCC
Confidence 357889999999999999999999999999864 99999999999999999984 6899999999999
Q ss_pred -cceeecCcceeec
Q 043731 85 -SLKLSEDGMKVGR 97 (498)
Q Consensus 85 -~leVsedg~kVrR 97 (498)
.|+|++||++|||
T Consensus 69 ~~lev~~d~~~VRR 82 (82)
T cd08028 69 GLIEVSEDKTKIRR 82 (82)
T ss_pred CEEEEcCCCCccCC
Confidence 9999999999998
No 13
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.92 E-value=3.1e-26 Score=209.58 Aligned_cols=167 Identities=29% Similarity=0.426 Sum_probs=145.8
Q ss_pred HHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcC-
Q 043731 6 EETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSS- 84 (498)
Q Consensus 6 ~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~- 84 (498)
.++-++|++||||||+|.||+||+||++++.++.+|||||.+++.|+|+..+++ |...|++||+.|.
T Consensus 11 a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~ltt------------D~~~Iv~al~ksk~ 78 (205)
T KOG4213|consen 11 AALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTT------------DFNVIVEALSKSKA 78 (205)
T ss_pred hHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccc------------cHHHHHHHHhhCHH
Confidence 345568999999999999999999999999889999999999999999999985 7899999999885
Q ss_pred -cceeecCcceeecccCCcchh---hhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEE
Q 043731 85 -SLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTAL 160 (498)
Q Consensus 85 -~leVsedg~kVrR~~~~~~~e---e~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aF 160 (498)
++++|+|.+++||.+.-|.|+ +++.....|++|.. |.+...++|.+|-+ |++.+|.|++.......++|..|
T Consensus 79 ~l~eisedk~k~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvk 154 (205)
T KOG4213|consen 79 ELMEISEDKTKIRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVK 154 (205)
T ss_pred hhhhhhhchhhhhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceE
Confidence 889999999999998877776 57778889999999 77788888888888 99999999987653347999999
Q ss_pred EEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 161 IEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 161 VeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
|+|.+.+.|..++.. ...+...+|..++
T Consensus 155 v~f~tk~qa~a~~~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 155 VTFQTKEQAFANDDTHEEKGAETELKRSG 183 (205)
T ss_pred EEeecHHHHHhhhhhhhhhccchHHHHHH
Confidence 999999999998885 5556666666544
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=223.12 Aligned_cols=280 Identities=20% Similarity=0.249 Sum_probs=171.4
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
....|+|+|||+.+...+|+.+|++||.|..|.||+... ++.+|||||.|....+|.+|++. +..+.|++|.|.|.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d--gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD--GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC--CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 377899999999999999999999999999999998764 44679999999999999999995 89999999999997
Q ss_pred ch---hHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCC
Q 043731 190 KE---FEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPD 266 (498)
Q Consensus 190 ~d---~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~ 266 (498)
-+ |........+.+++..+ ...+... .+++...-+--++..+
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~----eEed~e~-------------------------------~~d~~~~~~~Ed~e~d 238 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVK----EEEDKEA-------------------------------DEDDGKDFDEEDGEED 238 (678)
T ss_pred cccccccccchhhhhhhhhccc----hhhhccc-------------------------------ccccccccchhccccc
Confidence 32 22211121222211110 0000000 0000000000000000
Q ss_pred CC-----chhhhHHhhhhhcccCCCCCCccccccccccccCC--CCCCCccccc-ccccCcceeeeccCCCccccHHHHH
Q 043731 267 SS-----DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGD--KSSDGSIEKG-EEKEGKTSIDTYKDNMDVVMREDLK 338 (498)
Q Consensus 267 ~~-----~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~--~~~~g~~~~~-~~~~~~~~~vfv~nL~~~vt~EdLk 338 (498)
+. +.++....+...++ .|+++. ++.|.+. ........+. .+..+...+|||+|||+++++|+|+
T Consensus 239 ~edeEe~D~~se~~ee~~~~E----ee~~~v----Dd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~ 310 (678)
T KOG0127|consen 239 SEDEEETDGNSEAFEEGEESE----EEEDDV----DDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELK 310 (678)
T ss_pred ccccccccccchhhhcccccc----cccccc----ccccccccCcccchhccccccccccccceEEEecCCccccHHHHH
Confidence 00 00000000000000 000000 0111000 0000000010 1222344589999999999999999
Q ss_pred HHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCC-eEecCeEEEEEEcCChhHHHHHHHHhhh
Q 043731 339 SVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGG-LSVKNFIAVLEPVTGEAEKEYWSLLRGN 411 (498)
Q Consensus 339 e~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g-~~i~g~~~~v~~~~g~~E~e~~~~~~~~ 411 (498)
+.|++||+|.|+.+.. +.|+|||.|.++.+|.+|++++.-+++.| +.|+|+.|.|.++.+..|...+......
T Consensus 311 ~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~ 390 (678)
T KOG0127|consen 311 EHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKR 390 (678)
T ss_pred HHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhh
Confidence 9999999999988764 45679999999999999999986665555 9999999999999999998876432222
Q ss_pred hhccccccccchhhhhhhhhhhhhh
Q 043731 412 QERHRDVKGEEKHLEAENKAASEKM 436 (498)
Q Consensus 412 ~~k~~~~~~~~~~~~~~~~~~~~~~ 436 (498)
.......|+|+.+...-.+++...+
T Consensus 391 Kk~~gkrNLyLa~EG~I~~gt~aAe 415 (678)
T KOG0127|consen 391 KKPKGKRNLYLAREGLIRDGTPAAE 415 (678)
T ss_pred hccCCccceeeeccCccccCChhhc
Confidence 2333344888877654444444333
No 15
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=5e-26 Score=184.16 Aligned_cols=74 Identities=31% Similarity=0.588 Sum_probs=70.3
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++|. ++|||||++|++|+|||+++. +++.|++||+.|+.|+|+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~--~dG~Vpl~~i~~F~rmk~lt~------------d~~~i~~Al~~S~~lev~ 67 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMD--SDQYVPIWTIANFNKIKKLTT------------DIDLIVEALRESPNVQVD 67 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhC--CCCCEEHHHHhCchhHHHHcC------------CHHHHHHHHHhCCeEEEc
Confidence 689999999999999999999999997 799999999999999999974 689999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+||++||+
T Consensus 68 ed~~~VR~ 75 (75)
T cd08031 68 EKGEKVRP 75 (75)
T ss_pred CCCCccCc
Confidence 99999984
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=8.2e-24 Score=228.43 Aligned_cols=227 Identities=17% Similarity=0.130 Sum_probs=166.0
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEee
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLKP 188 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~~ 188 (498)
+|+|||+|||+++++++|+++|++||.|.+|.|+++ +|+|||+|.+.++|++|++. +..++|++|.|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999998752 58999999999999999973 6789999999987
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
+..... .. . .+. +..
T Consensus 75 s~~~~~---------------------~~-------------------~-------~~~--------------~~~---- 89 (481)
T TIGR01649 75 STSQEI---------------------KR-------------------D-------GNS--------------DFD---- 89 (481)
T ss_pred cCCccc---------------------cc-------------------C-------CCC--------------ccc----
Confidence 631000 00 0 000 000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
. .......+|||+||++.+|+++|+++|++||.|.
T Consensus 90 -------------------------------------------~--~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 90 -------------------------------------------S--AGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred -------------------------------------------C--CCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 0 0001134689999999999999999999999999
Q ss_pred EEEeecCCc--eEEEEeCCHHHHHHHHHHHhhcccCCeEecCe--EEEEEEc----------CChh----------HHHH
Q 043731 349 FIDFKIGAE--SGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF--IAVLEPV----------TGEA----------EKEY 404 (498)
Q Consensus 349 ~V~~~~g~~--~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~--~~~v~~~----------~g~~----------E~e~ 404 (498)
.|.+.+..+ .|||+|.++++|.+|++.|+ |..|.|. .+.|..+ ..+. |+++
T Consensus 125 ~v~i~~~~~~~~afVef~~~~~A~~A~~~Ln-----g~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~ 199 (481)
T TIGR01649 125 RIVTFTKNNVFQALVEFESVNSAQHAKAALN-----GADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDP 199 (481)
T ss_pred EEEEEecCCceEEEEEECCHHHHHHHHHHhc-----CCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCC
Confidence 998877654 69999999999999999984 6667542 3443332 2221 1110
Q ss_pred -H-----HHHhh---------------------------------------------------hhhcc------cccccc
Q 043731 405 -W-----SLLRG---------------------------------------------------NQERH------RDVKGE 421 (498)
Q Consensus 405 -~-----~~~~~---------------------------------------------------~~~k~------~~~~~~ 421 (498)
+ .+... ...++ ....+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (481)
T TIGR01649 200 GLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLM 279 (481)
T ss_pred CcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEE
Confidence 0 00000 00011 234789
Q ss_pred chhhhh-hhhhhhhhhhcccCCCccceeeeeccCCCCCCCcccccc
Q 043731 422 EKHLEA-ENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVRP 466 (498)
Q Consensus 422 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (498)
+.||+. .+..+.|+++|+.||.|+++|+ |++ ++|+|||.=
T Consensus 280 v~nL~~~~vt~~~L~~lF~~yG~V~~vki-~~~----~~g~afV~f 320 (481)
T TIGR01649 280 VSGLHQEKVNCDRLFNLFCVYGNVERVKF-MKN----KKETALIEM 320 (481)
T ss_pred EeCCCCCCCCHHHHHHHHHhcCCeEEEEE-EeC----CCCEEEEEE
Confidence 999997 6899999999999999999999 666 369999963
No 17
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=8e-25 Score=175.49 Aligned_cols=69 Identities=28% Similarity=0.570 Sum_probs=65.4
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++|. ++|||||++|++|+|||+|+. ++..|++||+.|+.|+++
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~--~~G~Vpl~~ia~F~rmk~lt~------------d~~~I~~Al~~S~~ve~~ 67 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMD--LQGFLPISLIAGFYRVQALTT------------NVDLILEALKDSTEVEIV 67 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhC--CCCCEeHHHHhcchHHHHhcC------------CHHHHHHHHHcCCeEEEe
Confidence 689999999999999999999999997 799999999999999999974 789999999999999999
Q ss_pred cCc
Q 043731 90 EDG 92 (498)
Q Consensus 90 edg 92 (498)
+++
T Consensus 68 ~~~ 70 (73)
T cd08038 68 DQK 70 (73)
T ss_pred CCc
Confidence 775
No 18
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=9.3e-25 Score=175.14 Aligned_cols=69 Identities=29% Similarity=0.543 Sum_probs=65.3
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||.||++|.||+++|. ++|||||++|++|||||+|+. +++.|++||+.|+.|+|+
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md--~dG~Vpi~~ia~F~rmk~Lt~------------d~~~I~~Al~~S~~vev~ 67 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMD--EDGFLPVTLIASFHRVQALTT------------DISLIIKALKDSKVVEII 67 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhc--cCCCEeHHHHhcchHHHHhcC------------CHHHHHHHHHcCCeEEEe
Confidence 589999999999999999999999997 799999999999999999984 789999999999999999
Q ss_pred cCc
Q 043731 90 EDG 92 (498)
Q Consensus 90 edg 92 (498)
++.
T Consensus 68 ~~~ 70 (73)
T cd08037 68 DMK 70 (73)
T ss_pred cch
Confidence 774
No 19
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=1.2e-24 Score=175.09 Aligned_cols=72 Identities=32% Similarity=0.562 Sum_probs=67.2
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++|. ++|||||++|++|+|||+++. +++.|++||+.|+.|+|+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~--~~G~Vpl~~i~~F~rmk~l~~------------d~~~i~~Al~~S~~lev~ 67 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKMD--PEGYLPIALIASFHRVQALTT------------DVNLILEALKDSTVVELV 67 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHcC--CCCCEeHHHHhccHHHHHHcC------------CHHHHHHHHHcCCeEEEe
Confidence 689999999999999999999999997 799999999999999999974 789999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+ .+|||
T Consensus 68 e--~kvR~ 73 (73)
T cd08034 68 D--EKVRC 73 (73)
T ss_pred c--CeecC
Confidence 8 45764
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.90 E-value=4e-23 Score=213.80 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=133.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||+|..|+|+++.. +++++|||||+|.++++|.+|++. +..+.+++|.|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~-tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK-TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34678999999999999999999999999999999999875 677999999999999999999984 677788887765
Q ss_pred ecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCC
Q 043731 188 PKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDS 267 (498)
Q Consensus 188 ~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~ 267 (498)
+..... .
T Consensus 183 ~a~p~~---------------------------------------------~---------------------------- 189 (346)
T TIGR01659 183 YARPGG---------------------------------------------E---------------------------- 189 (346)
T ss_pred cccccc---------------------------------------------c----------------------------
Confidence 431000 0
Q ss_pred CchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCce
Q 043731 268 SDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTV 347 (498)
Q Consensus 268 ~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V 347 (498)
.....+|||+|||..+|+++|+++|++||.|
T Consensus 190 -------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V 220 (346)
T TIGR01659 190 -------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQI 220 (346)
T ss_pred -------------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCE
Confidence 0001257999999999999999999999999
Q ss_pred EEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEcCC
Q 043731 348 KFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPVTG 398 (498)
Q Consensus 348 ~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~~g 398 (498)
..|.+.++. +.|||+|.+.++|++|+++|+ +..+.+ +.|.|+++..
T Consensus 221 ~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 221 VQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCc
Confidence 999988764 579999999999999999984 676765 6888887764
No 21
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=3.4e-24 Score=174.23 Aligned_cols=74 Identities=45% Similarity=0.721 Sum_probs=70.3
Q ss_pred HHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceee
Q 043731 10 QAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLS 89 (498)
Q Consensus 10 ~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVs 89 (498)
++|++||||||||+||++|.||+++| +++|||||++|++|+|||+++. +.+.|++||+.|..|+|+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~------------~~~~i~~Al~~s~~lel~ 67 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTT------------DVELILEALRDSSVVEVS 67 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcC------------CHHHHHHHHHhCCeEEEe
Confidence 57999999999999999999999999 4899999999999999999984 678999999999999999
Q ss_pred cCcceeec
Q 043731 90 EDGMKVGR 97 (498)
Q Consensus 90 edg~kVrR 97 (498)
+++++|||
T Consensus 68 ~~~~~Vrr 75 (75)
T cd07323 68 EDGTKVRR 75 (75)
T ss_pred CCCCccCC
Confidence 99999987
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=1.3e-22 Score=216.94 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=138.9
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||.++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+||.. +..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~-~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN-SRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC-CCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 45689999999999999999999999999999999999875 678999999999999999999986 8889999998765
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
..... +.. ... .. . .
T Consensus 165 ~~~~~----------------------~~~-----------~~~-----~~-----~------------------~---- 179 (457)
T TIGR01622 165 SQAEK----------------------NRA-----------AKA-----AT-----H------------------Q---- 179 (457)
T ss_pred cchhh----------------------hhh-----------hhc-----cc-----c------------------c----
Confidence 42100 000 000 00 0 0
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
.+. .....++||+|||..+++++|+++|++||.|.
T Consensus 180 ----------------------------------~~~-----------~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 180 ----------------------------------PGD-----------IPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred ----------------------------------CCC-----------CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 000 00134689999999999999999999999999
Q ss_pred EEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 349 FIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 349 ~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
.|.+.++ .+.|||.|.++++|.+|+..| | |..|.|+.|.|..+.
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l---~--g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM---N--GFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc---C--CcEECCEEEEEEEcc
Confidence 9998854 456999999999999999988 4 899999999999965
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.89 E-value=4.5e-22 Score=214.95 Aligned_cols=172 Identities=16% Similarity=0.129 Sum_probs=122.8
Q ss_pred cceeeeccCCCc-cccHHHHHHHhccCCceEEEEeecC-CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIG-AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.+.+|||+||++ .+|+++|+++|++||.|..|.++++ ++.|||+|.++++|.+|+..|+ |..|.|+.|.|...
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~ln-----g~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLN-----GVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCEECCceEEEEEc
Confidence 456899999997 6999999999999999999999876 4789999999999999999984 89999999999987
Q ss_pred CChhH---------------HHHHH----HHhh-hhhcc-----ccccccchhhhhhhhhhhhhhhcccCCC--ccceee
Q 043731 397 TGEAE---------------KEYWS----LLRG-NQERH-----RDVKGEEKHLEAENKAASEKMIQQEDAQ--IKPGKF 449 (498)
Q Consensus 397 ~g~~E---------------~e~~~----~~~~-~~~k~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 449 (498)
..+.- ++|-. +... .+..+ ....++++||..+..++.|+++|+++|. |+++|+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 44311 11100 0000 00001 1346889999999999999999999998 888888
Q ss_pred eeccCCCCCCCcccccchhhhh---hhhhhhhhHHh-h-hhheeeeeEeeccC
Q 043731 450 EQHEKPGISSGTSFVRPHLIFL---LRIKCASYWIS-R-CLVRYYVEFVFSDT 497 (498)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 497 (498)
+.+..+ ++|+|||.=...-- .-..|-.++|. + |-.-|.|-+-||-+
T Consensus 429 -~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 429 -FPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred -ecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 444444 78999986432111 11234455554 2 23345666666643
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=8.8e-22 Score=203.20 Aligned_cols=286 Identities=15% Similarity=0.195 Sum_probs=158.9
Q ss_pred ccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccC
Q 043731 71 DTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVA 150 (498)
Q Consensus 71 ~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~ 150 (498)
.+.+....||..-....+..-..+|....|.. .....++|||+|||.++++++|+++|++||.|..++++++..
T Consensus 53 ~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 53 VRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS------DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred CcHHHHHHHHhhcccEEECCeeEEEEeecccc------cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 35566667776544444432223333332221 124567899999999999999999999999999999988764
Q ss_pred CCCcccceEEEEeCCHHHHHHHHHh--CCeeCC--eEEEEeecchhHHHHHH-hHHHHhhcCccccCCccCCCCCccCCC
Q 043731 151 DKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG--VELHLKPKKEFEAERAK-ETEEFEKSRPAVGSNRKNNSNAEADYP 225 (498)
Q Consensus 151 ~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v~~k~d~~~~k~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~ 225 (498)
++.++|+|||+|.+.++|++|++. +..+.| .+|.+.+.......... ......... ... ....+
T Consensus 127 -~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~ 195 (352)
T TIGR01661 127 -TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQ--------NPQ--TTRVP 195 (352)
T ss_pred -CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhccc--------Ccc--cCCCC
Confidence 467899999999999999999984 666666 56777665322210000 000000000 000 00000
Q ss_pred CCcEEEEEeccccccCcccccCCCC--CCCCCcCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCC
Q 043731 226 KGLIVAFTLKNKSAEGSEEKNGSLK--PANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGD 303 (498)
Q Consensus 226 kg~iv~~~~k~~~~~~~~~~~g~~k--~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~ 303 (498)
-+..+... .. .+. +..... +......... .......+............ . +......
T Consensus 196 ~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 254 (352)
T TIGR01661 196 LSTILTAA----GI-GPM-HHAAARFRPSAGDFTAVL-------------AHQQQQHAVAQQHAAQRASP-P-ATDGQTA 254 (352)
T ss_pred cccccccc----CC-CCc-cCcccccccCcchhhhhh-------------hhhhhhcccccccccccCCC-c-ccccccc
Confidence 00000000 00 000 000000 0000000000 00000000000000000000 0 0000000
Q ss_pred CCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHh
Q 043731 304 KSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 304 ~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
....|. ......+.+..|||+|||+.+++++|+++|++||.|.+|.+.++ +|.|||.|.++++|.+|+++|+
T Consensus 255 ~~~~~~--~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 255 GLAAGA--QIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred ccccCC--CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC
Confidence 000111 01111233446999999999999999999999999999998764 5679999999999999999984
Q ss_pred hcccCCeEecCeEEEEEEcCChhH
Q 043731 378 LAQEGGLSVKNFIAVLEPVTGEAE 401 (498)
Q Consensus 378 ~~n~~g~~i~g~~~~v~~~~g~~E 401 (498)
|..|+|+.|.|..++.+++
T Consensus 333 -----G~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 333 -----GYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred -----CCEECCeEEEEEEccCCCC
Confidence 9999999999999988764
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=4.5e-22 Score=216.59 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=162.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecc
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKK 190 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~ 190 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++. +++++|||||+|.++++|++||+. ++|..|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~--sG~sRGfaFV~F~~~e~A~~Ai~~---lng~~i~----- 125 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF--SGQNRGYAFVTFCGKEEAKEAVKL---LNNYEIR----- 125 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC--CCCccceEEEEeCCHHHHHHHHHH---cCCCeec-----
Confidence 346899999999999999999999999999999999993 578999999999999999999985 4443332
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
.|..+.+. ++
T Consensus 126 -----------------------------------~Gr~l~V~---~S-------------------------------- 135 (578)
T TIGR01648 126 -----------------------------------PGRLLGVC---IS-------------------------------- 135 (578)
T ss_pred -----------------------------------CCcccccc---cc--------------------------------
Confidence 00000000 00
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCc--eE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGT--VK 348 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~--V~ 348 (498)
....++||+|||..+++++|.+.|++++. +.
T Consensus 136 -----------------------------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~ 168 (578)
T TIGR01648 136 -----------------------------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVD 168 (578)
T ss_pred -----------------------------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceE
Confidence 00125799999999999999999999963 34
Q ss_pred EEEee------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHHHhhhhhccccccccc
Q 043731 349 FIDFK------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEE 422 (498)
Q Consensus 349 ~V~~~------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~~ 422 (498)
.+.+. +.++.|||+|.++++|.+|+..+ +.+.+.+.|+.|.|..+..+.+.+. ........+++
T Consensus 169 vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL---~~gki~l~Gr~I~VdwA~p~~~~d~-------~~~~~~k~LfV 238 (578)
T TIGR01648 169 VIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL---MPGRIQLWGHVIAVDWAEPEEEVDE-------DVMAKVKILYV 238 (578)
T ss_pred EEEeccccccCccCceEEEEcCCHHHHHHHHHHh---hccceEecCceEEEEeecccccccc-------cccccccEEEE
Confidence 44332 24567999999999999999887 3456889999999998876544321 11122356899
Q ss_pred hhhhhhhhhhhhhhhcccC--CCccceeeeeccCCCCCCCccccc
Q 043731 423 KHLEAENKAASEKMIQQED--AQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
.||..+..++.|+++|+.+ |.|..+++ . +|++||.
T Consensus 239 gNL~~~~tee~L~~~F~~f~~G~I~rV~~-~-------rgfAFVe 275 (578)
T TIGR01648 239 RNLMTTTTEEIIEKSFSEFKPGKVERVKK-I-------RDYAFVH 275 (578)
T ss_pred eCCCCCCCHHHHHHHHHhcCCCceEEEEe-e-------cCeEEEE
Confidence 9999999999999999999 99999876 2 5688884
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=2.5e-22 Score=219.05 Aligned_cols=172 Identities=15% Similarity=0.234 Sum_probs=138.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++++++|+++|++||.|.+|+|+++.. +++++|||||+|.++++|++|+.. +..++|+.|.|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~-TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC-CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457899999999999999999999999999999999876 678999999999999999999984 78899999887522
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
... +... .. .. ..
T Consensus 185 ~~~--------------------------------p~a~--~~-----~~-----------------------~~----- 197 (612)
T TIGR01645 185 SNM--------------------------------PQAQ--PI-----ID-----------------------MV----- 197 (612)
T ss_pred ccc--------------------------------cccc--cc-----cc-----------------------cc-----
Confidence 100 0000 00 00 00
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
. ........+||+||+..+++++|+++|++||.|.+
T Consensus 198 ------------------------------------------~--~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 198 ------------------------------------------Q--EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred ------------------------------------------c--ccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE
Confidence 0 00011236899999999999999999999999999
Q ss_pred EEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChh
Q 043731 350 IDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEA 400 (498)
Q Consensus 350 V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~ 400 (498)
|.+.++ +|+|||+|.+.++|.+|++.+ | |..|+|+.|.|..+....
T Consensus 234 vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am---N--g~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 234 CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM---N--LFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh---C--CCeeCCeEEEEEecCCCc
Confidence 998764 467999999999999999998 4 999999999999887644
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.2e-21 Score=212.03 Aligned_cols=251 Identities=15% Similarity=0.130 Sum_probs=159.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccC------------CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-C
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQH------------VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~------------G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~ 176 (498)
....|+|||+|||+++|+++|.++|.+| +.|..+.+. ..+|||||+|.+.++|..||.. +
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhcCCC
Confidence 5678999999999999999999999975 244444442 3479999999999999999985 7
Q ss_pred CeeCCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCc
Q 043731 177 LFYAGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSE 256 (498)
Q Consensus 177 ~~~~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~ 256 (498)
..|.|+.|.|....+|...... .. .. . +.. ++.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~------------~~---~~--------------------~------~~~---~~~--- 277 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQI------------TP---EV--------------------S------QKN---PDD--- 277 (509)
T ss_pred eEeeCceeEecCccccCCcccc------------CC---CC--------------------C------CCC---Ccc---
Confidence 8899999987644333210000 00 00 0 000 000
Q ss_pred CCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHH
Q 043731 257 NACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMRED 336 (498)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~Ed 336 (498)
.. ... +. ... ..........|||+|||..+++++
T Consensus 278 ~~---~~~-----------------------------------~~--~~~------~~~~~~~~~~l~v~nlp~~~~~~~ 311 (509)
T TIGR01642 278 NA---KNV-----------------------------------EK--LVN------STTVLDSKDRIYIGNLPLYLGEDQ 311 (509)
T ss_pred cc---ccc-----------------------------------cc--ccc------cccCCCCCCEEEEeCCCCCCCHHH
Confidence 00 000 00 000 000001234689999999999999
Q ss_pred HHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHH------
Q 043731 337 LKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEY------ 404 (498)
Q Consensus 337 Lke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~------ 404 (498)
|+++|++||.|..+.+.++ .+.|||.|.++++|..|++.|+ |..|.|+.|.|..+........
T Consensus 312 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-----g~~~~~~~l~v~~a~~~~~~~~~~~~~~ 386 (509)
T TIGR01642 312 IKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-----GKDTGDNKLHVQRACVGANQATIDTSNG 386 (509)
T ss_pred HHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECccCCCCCCcccccc
Confidence 9999999999999887653 5679999999999999999884 9999999999999843211000
Q ss_pred ------HH-HHhhhh---hccccccccchhhh---hhhh-------hhhhhhhcccCCCccceeeeeccC----CCCCCC
Q 043731 405 ------WS-LLRGNQ---ERHRDVKGEEKHLE---AENK-------AASEKMIQQEDAQIKPGKFEQHEK----PGISSG 460 (498)
Q Consensus 405 ------~~-~~~~~~---~k~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 460 (498)
+. .+.... +..-..-+.+.|+- +-.+ .+.++++|..||.|.++++ +++. +|.+.|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i-~~~~~~~~~~~~~G 465 (509)
T TIGR01642 387 MAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI-PRPNGDRNSTPGVG 465 (509)
T ss_pred ccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe-eccCcCCCcCCCcc
Confidence 00 000000 00001112223331 1111 2568999999999999988 5542 356677
Q ss_pred cccccc
Q 043731 461 TSFVRP 466 (498)
Q Consensus 461 ~~~~~~ 466 (498)
++||.=
T Consensus 466 ~~fV~F 471 (509)
T TIGR01642 466 KVFLEY 471 (509)
T ss_pred eEEEEE
Confidence 778753
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.87 E-value=7.8e-21 Score=208.74 Aligned_cols=221 Identities=18% Similarity=0.256 Sum_probs=154.9
Q ss_pred ccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccC
Q 043731 71 DTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVA 150 (498)
Q Consensus 71 ~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~ 150 (498)
.+.+....|+..-....+......|.+..+..... .......++|||+|||.++|+++|+++|++||.|.++.++++.
T Consensus 137 ~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~- 214 (562)
T TIGR01628 137 EKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG- 214 (562)
T ss_pred CCHHHHHHHHHHhcccEecCceEEEeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-
Confidence 34556666666544444433222232221111100 0022345789999999999999999999999999999999885
Q ss_pred CCCcccceEEEEeCCHHHHHHHHHh--CCeeC----CeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCC
Q 043731 151 DKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA----GVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADY 224 (498)
Q Consensus 151 ~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~----G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 224 (498)
++.++|||||+|.+.++|.+|++. +..+. |+.|.|.+......+....+..+....
T Consensus 215 -~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~----------------- 276 (562)
T TIGR01628 215 -SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQ----------------- 276 (562)
T ss_pred -CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhh-----------------
Confidence 367899999999999999999985 66677 777766543211110000000000000
Q ss_pred CCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCC
Q 043731 225 PKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDK 304 (498)
Q Consensus 225 ~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~ 304 (498)
.+
T Consensus 277 ------------------------------------------------------------------~~------------ 278 (562)
T TIGR01628 277 ------------------------------------------------------------------QE------------ 278 (562)
T ss_pred ------------------------------------------------------------------hh------------
Confidence 00
Q ss_pred CCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhc
Q 043731 305 SSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLA 379 (498)
Q Consensus 305 ~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~ 379 (498)
........++||+||+..+++++|+++|++||.|..|.+.++ ++.|||.|.++++|.+|+..++
T Consensus 279 ---------~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~-- 347 (562)
T TIGR01628 279 ---------RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMH-- 347 (562)
T ss_pred ---------hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhc--
Confidence 000012346899999999999999999999999999998765 3679999999999999999884
Q ss_pred ccCCeEecCeEEEEEEcCChhHHH
Q 043731 380 QEGGLSVKNFIAVLEPVTGEAEKE 403 (498)
Q Consensus 380 n~~g~~i~g~~~~v~~~~g~~E~e 403 (498)
|..|+|+.|.|..+..++++.
T Consensus 348 ---g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 348 ---GRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred ---CCeeCCceeEEEeccCcHHHH
Confidence 899999999999999888775
No 29
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.85 E-value=3.8e-22 Score=155.87 Aligned_cols=61 Identities=43% Similarity=0.769 Sum_probs=54.3
Q ss_pred HHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhc
Q 043731 12 VLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKS 83 (498)
Q Consensus 12 i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S 83 (498)
|++||||||||+||++|+||+++|.++++|||||++|++|+|||+++. .+++.|++||+.|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~-----------~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTN-----------TDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH-------------S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhc-----------CCHHHHHHHHHcC
Confidence 789999999999999999999999988899999999999999999982 2789999999987
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=5.5e-20 Score=192.07 Aligned_cols=251 Identities=19% Similarity=0.210 Sum_probs=175.9
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
..||||++||++++.++|.++|+.+|+|..+.+..++. +...+||+||+|+-.|++++|++. ..+|+|+.|.|.+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g-s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG-SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC-cccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 47999999999999999999999999999999988876 567899999999999999999996 778999999987653
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
.....+.. .+. .++ .+.+ +.+++..
T Consensus 84 ~R~r~e~~------------~~~--e~~----------~veK---------~~~q~~~---------------------- 108 (678)
T KOG0127|consen 84 KRARSEEV------------EKG--ENK----------AVEK---------PIEQKRP---------------------- 108 (678)
T ss_pred ccccchhc------------ccc--cch----------hhhc---------ccccCCc----------------------
Confidence 11100000 000 000 0000 0000000
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
. ....+++-..+.++|||+.|...+|+-+|+.||.|.-|
T Consensus 109 ----------------------~-------------------k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 109 ----------------------T-------------------KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred ----------------------c-------------------hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 0 00001112346789999999999999999999999999
Q ss_pred EeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh--------hHHHHHHHH---------
Q 043731 351 DFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE--------AEKEYWSLL--------- 408 (498)
Q Consensus 351 ~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~--------~E~e~~~~~--------- 408 (498)
.|++-. |+|||.|.+..+|++|++.+ | |..|+|+.|.|.-+..+ +|.+.+++.
T Consensus 148 ~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~---N--~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~ 222 (678)
T KOG0127|consen 148 VIPRKKDGKLCGFAFVQFKEKKDAEKALEFF---N--GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEA 222 (678)
T ss_pred EcccCCCCCccceEEEEEeeHHHHHHHHHhc---c--CceecCceeEEeeecccccccccchhhhhhhhhccchhhhccc
Confidence 998643 35899999999999999988 4 99999999998876431 122222210
Q ss_pred -------------------------------------------------------hhhhhcc-c-----cccccchhhhh
Q 043731 409 -------------------------------------------------------RGNQERH-R-----DVKGEEKHLEA 427 (498)
Q Consensus 409 -------------------------------------------------------~~~~~k~-~-----~~~~~~~~~~~ 427 (498)
+..|.+- + +.-..+-||-=
T Consensus 223 ~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~f 302 (678)
T KOG0127|consen 223 DEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPF 302 (678)
T ss_pred ccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCc
Confidence 0001110 0 01112334444
Q ss_pred hhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 428 ENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
+...+.+.+.|+.||-|..+.+..|-..|.|+|++||.
T Consensus 303 D~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~ 340 (678)
T KOG0127|consen 303 DTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVK 340 (678)
T ss_pred cccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEE
Confidence 45567889999999999999986666689999999996
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.6e-20 Score=177.44 Aligned_cols=170 Identities=15% Similarity=0.225 Sum_probs=137.8
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.--|||+.|...++-+.|++.|.+||+|...++.||.. +.++|||+||.|-+.++|++|+.. +..+.+|.|+-.|+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~-T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN-TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc-CCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 34699999999999999999999999999999999987 788999999999999999999995 888999999866652
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
+|.. +. + .++ +++ |+
T Consensus 141 ----RKp~------------e~---n--------~~~--ltf-------------------de----------------- 155 (321)
T KOG0148|consen 141 ----RKPS------------EM---N--------GKP--LTF-------------------DE----------------- 155 (321)
T ss_pred ----cCcc------------cc---C--------CCC--ccH-------------------HH-----------------
Confidence 1110 00 0 000 011 00
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
+. . .....+++|||+|++..+|+++|++.|++||.|..|
T Consensus 156 ----------------------------------V~------N-Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EV 194 (321)
T KOG0148|consen 156 ----------------------------------VY------N-QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEV 194 (321)
T ss_pred ----------------------------------Hh------c-cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEE
Confidence 00 0 011235579999999999999999999999999999
Q ss_pred EeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 351 DFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 351 ~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
++-++++.+||+|++.|+|.+||..+ | +..|.|..|.+-
T Consensus 195 RvFk~qGYaFVrF~tkEaAahAIv~m---N--ntei~G~~VkCs 233 (321)
T KOG0148|consen 195 RVFKDQGYAFVRFETKEAAAHAIVQM---N--NTEIGGQLVRCS 233 (321)
T ss_pred EEecccceEEEEecchhhHHHHHHHh---c--CceeCceEEEEe
Confidence 99999999999999999999999988 4 899999988663
No 32
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.81 E-value=6.4e-20 Score=191.70 Aligned_cols=151 Identities=23% Similarity=0.386 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhh
Q 043731 3 SLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRK 82 (498)
Q Consensus 3 ~~~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~ 82 (498)
+++.++++.+++|||||||..||..|.||..+|+ +|.||||.+|+.|..|+.|++ |+++|+++|+.
T Consensus 91 Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQMD--SDqyVPI~tva~~~~i~kltt------------DvdLI~Evlre 156 (684)
T KOG2591|consen 91 PLSRDLKQLLKKQLEYYFSRENLSSDRYLISQMD--SDQYVPINTVANFPEIMKLTT------------DVDLIVEVLRE 156 (684)
T ss_pred ccchhHHHHHHHHHHHhhccccccchhhhhhhcc--cccccchhhhccchhhhhhcc------------chHHHHHHHhc
Confidence 7788999999999999999999999999999999 899999999999999999985 78999999999
Q ss_pred cCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhcc--CCceeeEEcccccCCCCcccceEE
Q 043731 83 SSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQ--HVKVNSVRLPRHVADKRLFCGTAL 160 (498)
Q Consensus 83 S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~--~G~V~~Vri~r~~~~~~~~kG~aF 160 (498)
|+.|+|+++|.+||... ..+-|+++-||..+.+++++.+|+. |-++.++..-.+ ..||
T Consensus 157 sp~VqvDekgekVrp~~------------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWy 216 (684)
T KOG2591|consen 157 SPNVQVDEKGEKVRPNH------------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWY 216 (684)
T ss_pred CCCceeccCccccccCc------------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceE
Confidence 99999999999998543 3456889999999999999999986 777888776443 3499
Q ss_pred EEeCCHHHHHHHHHh----CCeeCCeEEEEe
Q 043731 161 IEFSTEEDAEKVLKQ----GLFYAGVELHLK 187 (498)
Q Consensus 161 VeF~s~e~A~kAl~~----~~~~~G~~l~v~ 187 (498)
|+|++..||+.|.+- -.+|.|++|..+
T Consensus 217 ITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 217 ITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 999999999999872 577999988643
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.3e-18 Score=178.53 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=156.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee-CCeEEEEe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY-AGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~-~G~~l~v~ 187 (498)
....-|||+.||.++.+++|.-+|.+.|+|-.+||+.++. ++.++|||||+|.+.++|++|++. ...| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~-sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF-SGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc-CCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4567899999999999999999999999999999999975 688999999999999999999995 3332 66777665
Q ss_pred ecch----hHHH--HHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCC
Q 043731 188 PKKE----FEAE--RAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKP 261 (498)
Q Consensus 188 ~k~d----~~~~--k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~ 261 (498)
.+.+ |.-. |..++++..... .....|. +-+.+-+. ++|..-+
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~--------------~kVteGV-vdVivy~~-------------p~dk~KN---- 207 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEM--------------KKVTEGV-VDVIVYPS-------------PDDKTKN---- 207 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHH--------------HhhCCCe-eEEEEecC-------------ccccccc----
Confidence 4321 1111 122222221100 0112343 22222110 1111100
Q ss_pred CCCC--CCCchhhhHHhhhhhcccCCCCCCccccccccccccCC-CCCCCcccccccccCcceeeeccCCCccccHHHHH
Q 043731 262 DGEP--DSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGD-KSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLK 338 (498)
Q Consensus 262 ~~~~--~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~-~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLk 338 (498)
.+-. +=.+-..+....+|+... ..+-.. -.+.-++-+.. +++. +.-.+-..+||+||+.+||+|.|+
T Consensus 208 RGFaFveYe~H~~Aa~aRrKl~~g-~~klwg--n~~tVdWAep~~e~de-------d~ms~VKvLYVRNL~~~tTeE~lk 277 (506)
T KOG0117|consen 208 RGFAFVEYESHRAAAMARRKLMPG-KIKLWG--NAITVDWAEPEEEPDE-------DTMSKVKVLYVRNLMESTTEETLK 277 (506)
T ss_pred cceEEEEeecchhHHHHHhhccCC-ceeecC--CcceeeccCcccCCCh-------hhhhheeeeeeeccchhhhHHHHH
Confidence 0100 000012223333332210 011000 00111111111 1100 011123368999999999999999
Q ss_pred HHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHH
Q 043731 339 SVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSL 407 (498)
Q Consensus 339 e~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~ 407 (498)
++|++||.|..|...++ .|||.|.+.++|-+|+..+ | |..|+|..|.|.++-...++++|.+
T Consensus 278 ~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~---n--gkeldG~~iEvtLAKP~~k~k~~r~ 339 (506)
T KOG0117|consen 278 KLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKET---N--GKELDGSPIEVTLAKPVDKKKKERK 339 (506)
T ss_pred HHHHhccceEEeecccc--eeEEeecchHHHHHHHHHh---c--CceecCceEEEEecCChhhhccchh
Confidence 99999999999987754 9999999999999999987 4 9999999999999999999999974
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=1.1e-18 Score=190.22 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=145.4
Q ss_pred cccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCc-eeeEEcccc
Q 043731 70 EDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVK-VNSVRLPRH 148 (498)
Q Consensus 70 ~~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~-V~~Vri~r~ 148 (498)
..+.+....||+.-...++. .++.+.... ....++|||+|||.++|.++|.+.|++++. +..+.+...
T Consensus 106 F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~----------S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 106 FCGKEEAKEAVKLLNNYEIR-PGRLLGVCI----------SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred eCCHHHHHHHHHHcCCCeec-CCccccccc----------cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 34566677777654433432 222222111 234689999999999999999999999963 444433322
Q ss_pred cCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCC
Q 043731 149 VADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADY 224 (498)
Q Consensus 149 ~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 224 (498)
..+.++++|||||+|.+.++|..|++. ...+.|+.|.|.|...-. ..
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~------------------------~~----- 225 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE------------------------EV----- 225 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc------------------------cc-----
Confidence 222456899999999999999999974 245778888776642000 00
Q ss_pred CCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCC
Q 043731 225 PKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDK 304 (498)
Q Consensus 225 ~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~ 304 (498)
+ +
T Consensus 226 ---------------------------d-----------------------------------~---------------- 227 (578)
T TIGR01648 226 ---------------------------D-----------------------------------E---------------- 227 (578)
T ss_pred ---------------------------c-----------------------------------c----------------
Confidence 0 0
Q ss_pred CCCCcccccccccCcceeeeccCCCccccHHHHHHHhccC--CceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccC
Q 043731 305 SSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKF--GTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEG 382 (498)
Q Consensus 305 ~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~f--G~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~ 382 (498)
+......+|||+||+..+++|+|+++|++| |+|..|.+.+ +.|||+|.++++|++|+++| |
T Consensus 228 ----------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~l---n-- 290 (578)
T TIGR01648 228 ----------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDEL---N-- 290 (578)
T ss_pred ----------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHh---C--
Confidence 000012368999999999999999999999 9999998775 49999999999999999988 4
Q ss_pred CeEecCeEEEEEEcCChhHHHHHH
Q 043731 383 GLSVKNFIAVLEPVTGEAEKEYWS 406 (498)
Q Consensus 383 g~~i~g~~~~v~~~~g~~E~e~~~ 406 (498)
|..|+|+.|.|..+...+...++.
T Consensus 291 G~~i~Gr~I~V~~Akp~~~~~~~~ 314 (578)
T TIGR01648 291 GKELEGSEIEVTLAKPVDKKSYVR 314 (578)
T ss_pred CCEECCEEEEEEEccCCCcccccc
Confidence 899999999999997766555553
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.9e-19 Score=170.84 Aligned_cols=228 Identities=14% Similarity=0.165 Sum_probs=166.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
....|+|.-||..+|+++|+.+|+..|+|+++.+.||+. ++++.||+||.|-+++||++|+.. +..+..+.|.|...
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-cccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 345689999999999999999999999999999999997 788999999999999999999985 55555555554433
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
+.-.+ +
T Consensus 119 RPSs~------------------------------------~-------------------------------------- 124 (360)
T KOG0145|consen 119 RPSSD------------------------------------S-------------------------------------- 124 (360)
T ss_pred cCChh------------------------------------h--------------------------------------
Confidence 21000 0
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
=+..++||.+||..+|..+|.++|++||.|.-
T Consensus 125 ------------------------------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 125 ------------------------------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred ------------------------------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 01225799999999999999999999997633
Q ss_pred EEe------ecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEec--CeEEEEEEcCChhHHH---HHHH-------Hhhh
Q 043731 350 IDF------KIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVK--NFIAVLEPVTGEAEKE---YWSL-------LRGN 411 (498)
Q Consensus 350 V~~------~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~--g~~~~v~~~~g~~E~e---~~~~-------~~~~ 411 (498)
-++ .-+++-|||||...++|+.|+..|+ |.+=- ...|+|+.+..-.-+. -+.. ....
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-----G~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~G 231 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGG 231 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhcc-----CCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCC
Confidence 222 1245669999999999999999984 33332 3577888774432222 1111 1111
Q ss_pred hhccccc-----------------------------------------cccchhhhhhhhhhhhhhhcccCCCccceeee
Q 043731 412 QERHRDV-----------------------------------------KGEEKHLEAENKAASEKMIQQEDAQIKPGKFE 450 (498)
Q Consensus 412 ~~k~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (498)
..-|+.. -..+-||.-+.++.-|-.+|..||-|+..||
T Consensus 232 p~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv- 310 (360)
T KOG0145|consen 232 PMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV- 310 (360)
T ss_pred cccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-
Confidence 1111111 1235577778888899999999999999999
Q ss_pred eccCC-CCCCCcccccchh
Q 043731 451 QHEKP-GISSGTSFVRPHL 468 (498)
Q Consensus 451 ~~~~~-~~~~~~~~~~~~~ 468 (498)
.||.. -.-||+|||.-.+
T Consensus 311 irD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 311 IRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred EecCCcccccceeEEEecc
Confidence 88876 7889999997553
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.78 E-value=9.4e-18 Score=181.75 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=130.7
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+.+|+++|+++|++||.|..+.|+++.. ++.++|||||+|.+.++|..|+.. +..+.|+.|.|.+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA-TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 357999999999999999999999999999999988865 677899999999999999999984 88899999998775
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCc-EEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGL-IVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~-iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
..-.. . ..... ..+. .+... . . ..
T Consensus 373 ~~~~~------------~-------~~~~~-----~~~~~~~~~~-----------~-~---------------~~---- 397 (509)
T TIGR01642 373 CVGAN------------Q-------ATIDT-----SNGMAPVTLL-----------A-K---------------AL---- 397 (509)
T ss_pred ccCCC------------C-------CCccc-----cccccccccc-----------c-c---------------cc----
Confidence 31000 0 00000 0000 00000 0 0 00
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCcc----------ccHHHHH
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDV----------VMREDLK 338 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~----------vt~EdLk 338 (498)
.. .....+ ...+..+++.|+... ...|+|+
T Consensus 398 --------~~------------------------~~~~~~--------~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~ 437 (509)
T TIGR01642 398 --------SQ------------------------SILQIG--------GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVK 437 (509)
T ss_pred --------hh------------------------hhcccc--------CCCceEEEeccCCchhHhcCcchHHHHHHHHH
Confidence 00 000000 001234566666421 2347899
Q ss_pred HHhccCCceEEEEeecC---------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 339 SVFHKFGTVKFIDFKIG---------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 339 e~F~~fG~V~~V~~~~g---------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
++|++||.|..|.|++. .|.|||.|+++++|++|+++|+ |..|+|+.|.+....
T Consensus 438 ~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 438 TEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeC
Confidence 99999999999998753 3568999999999999999984 999999999988754
No 37
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=99.76 E-value=1.4e-18 Score=150.53 Aligned_cols=97 Identities=36% Similarity=0.642 Sum_probs=71.8
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAE 401 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E 401 (498)
.|.+.+++..+++++||++|++||.|.||+|.+|..+|||||.++++|++|++++..++++++.|++..+++++|+|++|
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGeeE 82 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEEE 82 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHHH
Confidence 45567799999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhhhhhccccc
Q 043731 402 KEYWSLLRGNQERHRDV 418 (498)
Q Consensus 402 ~e~~~~~~~~~~k~~~~ 418 (498)
++||+++.+.+++.+..
T Consensus 83 ~~Yw~ki~e~~~~k~~~ 99 (105)
T PF08777_consen 83 EEYWKKIIEDRQKKRNK 99 (105)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999988876643
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.75 E-value=6.2e-17 Score=173.21 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=72.5
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.++|||+|||..+|+++|+++|++||.|..|.|+++.. ++.++|||||+|.+.++|.+|+.. +..+.|++|.|.+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~-~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE-TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 58999999999999999999999999999999998875 567899999999999999999984 889999999999876
Q ss_pred hh
Q 043731 191 EF 192 (498)
Q Consensus 191 d~ 192 (498)
+.
T Consensus 265 ~~ 266 (457)
T TIGR01622 265 DS 266 (457)
T ss_pred CC
Confidence 43
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.71 E-value=3.8e-17 Score=150.93 Aligned_cols=160 Identities=19% Similarity=0.159 Sum_probs=130.2
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
...||||+||+..++++-|.++|-+.|+|.+++||+++- +...+|||||+|.++|+|+-|++- ...+-|++|+|...
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv-~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV-TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh-cccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 357999999999999999999999999999999999987 567899999999999999999983 67788999885332
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
.. ..++
T Consensus 87 s~------------------------~~~n-------------------------------------------------- 92 (203)
T KOG0131|consen 87 SA------------------------HQKN-------------------------------------------------- 92 (203)
T ss_pred cc------------------------cccc--------------------------------------------------
Confidence 10 0000
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
+. .+.++||+||.+.+++.-|.++|+.||.+..
T Consensus 93 -----------------------------------l~------------vganlfvgNLd~~vDe~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 93 -----------------------------------LD------------VGANLFVGNLDPEVDEKLLYDTFSAFGVLIS 125 (203)
T ss_pred -----------------------------------cc------------ccccccccccCcchhHHHHHHHHHhcccccc
Confidence 00 0135799999999999999999999997643
Q ss_pred E-Eee------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 350 I-DFK------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 350 V-~~~------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
. .++ .++++|||.|.+.|++.+|++++ | |-.+.+++++|..+-.
T Consensus 126 ~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~---n--gq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 126 PPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM---N--GQYLCNRPITVSYAFK 176 (203)
T ss_pred CCcccccccCCCCCCCeEEechhHHHHHHHHHHh---c--cchhcCCceEEEEEEe
Confidence 1 222 23456999999999999999998 4 9999999999998843
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.5e-17 Score=167.43 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=131.6
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh---CCeeCCe--EE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ---GLFYAGV--EL 184 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~---~~~~~G~--~l 184 (498)
+.+.-.+||+.+|..+++.+|+++|++||.|..|.|++|+. ++.++||+||.|.+.++|.+|+.. ..++-|- +|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~-t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS-TGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc-cCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 35667899999999999999999999999999999999997 788999999999999999998874 3445442 22
Q ss_pred EEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCC
Q 043731 185 HLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGE 264 (498)
Q Consensus 185 ~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~ 264 (498)
.|++..
T Consensus 110 qvk~Ad-------------------------------------------------------------------------- 115 (510)
T KOG0144|consen 110 QVKYAD-------------------------------------------------------------------------- 115 (510)
T ss_pred eecccc--------------------------------------------------------------------------
Confidence 222210
Q ss_pred CCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccC
Q 043731 265 PDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKF 344 (498)
Q Consensus 265 ~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~f 344 (498)
.|.++- .....+||+-|+..+|+.+++++|++|
T Consensus 116 ----------------------------------~E~er~-------------~~e~KLFvg~lsK~~te~evr~iFs~f 148 (510)
T KOG0144|consen 116 ----------------------------------GERERI-------------VEERKLFVGMLSKQCTENEVREIFSRF 148 (510)
T ss_pred ----------------------------------hhhhcc-------------ccchhhhhhhccccccHHHHHHHHHhh
Confidence 000000 001246999999999999999999999
Q ss_pred CceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEcCChhHHH
Q 043731 345 GTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPVTGEAEKE 403 (498)
Q Consensus 345 G~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~~g~~E~e 403 (498)
|.|..+.+.|| +|+|||.|.+.|.|..|+.+|+ +-.+|.| ..+.|+-+.-+-+|+
T Consensus 149 G~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n----g~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 149 GHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN----GTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred CccchhhheecccccccceeEEEEehHHHHHHHHHhhc----cceeeccCCCceEEEecccCCCch
Confidence 99999998874 5669999999999999999984 4567776 577888885544443
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=5.5e-15 Score=161.78 Aligned_cols=122 Identities=19% Similarity=0.284 Sum_probs=91.0
Q ss_pred CCcccHHHHHHHHhhcCcceeecCcceeecccCCcchhhh-----hhccccceEEeccCCCCCcHHHHHHHhccCCceee
Q 043731 68 IPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEM-----KEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNS 142 (498)
Q Consensus 68 v~~~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~-----~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~ 142 (498)
|...+.+....|+..-....+..-..+|+|....+..... ......++|||+|||.++++++|+++|+.||.|.+
T Consensus 154 VeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 154 VEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred EEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE
Confidence 3345667777787755545554333345443332221110 01123578999999999999999999999999999
Q ss_pred EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 143 VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 143 Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
++|.++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|+|.+..
T Consensus 234 vrl~~D~~-tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 234 CQLARAPT-GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred EEEEecCC-CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 99999875 677899999999999999999985 788999999997653
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=5.9e-16 Score=166.66 Aligned_cols=293 Identities=20% Similarity=0.193 Sum_probs=179.9
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
++...+-|+|+|||..+..++|..+|..||.|..|.||+. + -.|+|+|.++.+|.+|+.. ...+...++.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~----G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG----G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc----c---ceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 3456688999999999999999999999999999988732 1 1399999999999999984 44455555554
Q ss_pred eecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCC-CCCCCcCCCCCCCCC
Q 043731 187 KPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLK-PANDSENACKPDGEP 265 (498)
Q Consensus 187 ~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k-~~~~~~~~~~~~~~~ 265 (498)
.|... + .+... |+..-.... ...+ ..+....+...++..
T Consensus 454 e~aP~--d-------vf~~~------------------pka~~~~~e-------------~~~~~ee~~~Er~s~~d~~v 493 (725)
T KOG0110|consen 454 EWAPE--D-------VFTED------------------PKADDLSAE-------------SRSKMEENPSERVSAEDGQV 493 (725)
T ss_pred ccChh--h-------hccCC------------------ccccccccc-------------cccccccCcceecccccccc
Confidence 44311 0 00000 000000000 0000 000000000000000
Q ss_pred CCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCC
Q 043731 266 DSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFG 345 (498)
Q Consensus 266 ~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG 345 (498)
. ++.++.|+.. . ....+.....+.+|++||+++++.++|..+|.+.|
T Consensus 494 ~---------------eD~d~te~ss-------------~-----a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 494 E---------------EDKDPTEESS-------------L-----ARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred c---------------ccCCcccccc-------------c-----hhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 0 0000000000 0 00000001112289999999999999999999999
Q ss_pred ceEEEEeecCC---------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHHHhhhhhccc
Q 043731 346 TVKFIDFKIGA---------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSLLRGNQERHR 416 (498)
Q Consensus 346 ~V~~V~~~~g~---------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~~~~~~~k~~ 416 (498)
.|..+.|..-+ |.|||+|.++++|+.|+.+|+ |..|+|+.|.|++..-+.+-.-=+ -..... .
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtvldGH~l~lk~S~~k~~~~~gK-~~~~kk--~ 612 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTVLDGHKLELKISENKPASTVGK-KKSKKK--K 612 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-----CceecCceEEEEeccCcccccccc-cccccc--c
Confidence 99999876432 779999999999999999985 999999999999987111111001 011111 1
Q ss_pred cccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCcccccchh----hhhhhhhhhhhHHhhhhheee
Q 043731 417 DVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVRPHL----IFLLRIKCASYWISRCLVRYY 489 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 489 (498)
..+.-++|+--...---.+.||..||+|.++-+--.=..|+++|||||-=.. ..-.+--|.....+|.||--|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 5677788887777778899999999999999883331258899999985211 112223344456677777443
No 43
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5e-15 Score=154.67 Aligned_cols=308 Identities=16% Similarity=0.188 Sum_probs=176.9
Q ss_pred CCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEec
Q 043731 40 DAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAAT 119 (498)
Q Consensus 40 ~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~ 119 (498)
.-.|++.++... - .| .++++.+ .+....-.||..-+.=.+. |+.||--.. +.+...|||.
T Consensus 23 ~~v~s~rvc~d~-t--sl-gy~yvnf-----~~~~da~~A~~~~n~~~~~--~~~~rim~s---------~rd~~~~~i~ 82 (369)
T KOG0123|consen 23 GPVLSIRVCRDA-T--SL-GYAYVNF-----QQPADAERALDTMNFDVLK--GKPIRIMWS---------QRDPSLVFIK 82 (369)
T ss_pred CCceeEEEeecC-C--cc-ceEEEec-----CCHHHHHHHHHHcCCcccC--CcEEEeehh---------ccCCceeeec
Confidence 345567766666 3 33 4566554 3556677777765443333 555553322 2334459999
Q ss_pred cCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecchhHHHHH
Q 043731 120 PLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKEFEAERA 197 (498)
Q Consensus 120 nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d~~~~k~ 197 (498)
|||.+++...|.++|+.||+|.+|++.++.. + ++|+ ||+|+++++|++|+.. +..++|++|.|-....-..+..
T Consensus 83 nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 83 NLDESIDNKSLYDTFSEFGNILSCKVATDEN--G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred CCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcc
Confidence 9999999999999999999999999998864 3 8999 9999999999999995 8889999999876543222211
Q ss_pred HhHHHHhhcCcccc-CCcc-CCC--CCccCC-CCCcEEEEEeccccccCcccccCCCCCCCCC---cCCCCCCCCCCCCc
Q 043731 198 KETEEFEKSRPAVG-SNRK-NNS--NAEADY-PKGLIVAFTLKNKSAEGSEEKNGSLKPANDS---ENACKPDGEPDSSD 269 (498)
Q Consensus 198 ~~~~~~~~~~~~~~-k~~~-~~~--~~~~~~-~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~---~~~~~~~~~~~~~~ 269 (498)
...+ +.+....+- ++.. +.+ .....+ ..|-+....+-+...+. +..-|--.+.+.. -+.....+.+.. +
T Consensus 159 ~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~l~~~~~~-~ 235 (369)
T KOG0123|consen 159 PLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVETLNGKIFG-D 235 (369)
T ss_pred cccc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHhccCCcCC-c
Confidence 1111 111111000 0000 000 000111 23334443331111100 0000000011100 000000111000 0
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccc--------cccccCcceeeeccCCCccccHHHHHHHh
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEK--------GEEKEGKTSIDTYKDNMDVVMREDLKSVF 341 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~--------~~~~~~~~~~vfv~nL~~~vt~EdLke~F 341 (498)
..- -+.. ..++......++ .....-..+++|++|++..++.+.|+++|
T Consensus 236 ~~~------------~V~~------------aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f 291 (369)
T KOG0123|consen 236 KEL------------YVGR------------AQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIF 291 (369)
T ss_pred cce------------eecc------------cccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHH
Confidence 000 0000 000000000000 01112245579999999999999999999
Q ss_pred ccCCceEEEEeec-----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHH
Q 043731 342 HKFGTVKFIDFKI-----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKE 403 (498)
Q Consensus 342 ~~fG~V~~V~~~~-----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e 403 (498)
+.||+|..+.++. ..+.|||.|..+++|.+|+..+ | |..+.++.+++.+++-..++.
T Consensus 292 ~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~---n--~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 292 SSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEM---N--GRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred hcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhh---C--hhhhcCCchhhhHHhhhccch
Confidence 9999999987764 4566999999999999998877 4 999999999999988554444
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=1.3e-15 Score=158.09 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=112.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
.++|||+|||.++|+++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.| + |..|.++.|.|
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~L---n--G~~l~gr~i~V 181 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNL---N--GITVRNKRLKV 181 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHc---C--CCccCCceeee
Confidence 4589999999999999999999999999999987653 56999999999999999988 3 89999999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccC-CCCCCCcccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEK-PGISSGTSFVRP 466 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 466 (498)
..+.... ......++++.||.....++.|+++|..+|.|..|++ ++|. .|.++|++||.=
T Consensus 182 ~~a~p~~------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F 242 (346)
T TIGR01659 182 SYARPGG------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRF 242 (346)
T ss_pred ecccccc------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEE
Confidence 8764321 1234568999999999999999999999999999999 5665 799999999963
No 45
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.3e-16 Score=160.56 Aligned_cols=180 Identities=29% Similarity=0.434 Sum_probs=146.2
Q ss_pred HHhcchhhcc-----CCCCCcChHHHhhhCCC--CCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhc-
Q 043731 12 VLRQVEFYFS-----DSNIPTDEFLRGKISES--SDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKS- 83 (498)
Q Consensus 12 i~~QvEfYFs-----d~NL~~D~fL~~~~~~~--~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S- 83 (498)
+..|+||||| |.|+++|+||+....++ .+|||||.++++|+||+.+.. .+..|..++++|
T Consensus 75 ~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs------------~~~~v~~a~rks~ 142 (438)
T COG5193 75 TLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGS------------PVSAVSGALRKSL 142 (438)
T ss_pred cccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCC------------chhhhhhhhhcCc
Confidence 8899999999 99999999999987763 389999999999999999963 578899999999
Q ss_pred --CcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcH--------HHHHHHhcc--CCceeeEEcccccCC
Q 043731 84 --SSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKR--------EDVEAFFSQ--HVKVNSVRLPRHVAD 151 (498)
Q Consensus 84 --~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~--------e~L~~~F~~--~G~V~~Vri~r~~~~ 151 (498)
..++++.+|..++|..+.........+...|.+|+.+++...+. +++...|.. .|++..|+++|+..
T Consensus 143 ~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~- 221 (438)
T COG5193 143 DARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWL- 221 (438)
T ss_pred ccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhh-
Confidence 79999999999998876654332223566799999999886544 489999999 78999999999875
Q ss_pred CCcccceEEEEeCCHHHHHHHHHh---------------CCeeCCeEEEEeecch----hHHHHHHhHHHHh
Q 043731 152 KRLFCGTALIEFSTEEDAEKVLKQ---------------GLFYAGVELHLKPKKE----FEAERAKETEEFE 204 (498)
Q Consensus 152 ~~~~kG~aFVeF~s~e~A~kAl~~---------------~~~~~G~~l~v~~k~d----~~~~k~~~~~~~~ 204 (498)
...|+|+.|++|...+.+++++.. ...++..-+.|+.+.. |......+...|.
T Consensus 222 nkn~~gSv~~efk~~~~~q~~nn~~~r~~~~~~~~~~~~~~~~ep~~lsI~a~k~QiEyYFseenl~~d~~l 293 (438)
T COG5193 222 NKNFRGSVFVEFKYFREAQRFNNGFYRNKKYPNDPETVYYYSVEPILLSIMAKKEQIEYYFSEENLKSDEFL 293 (438)
T ss_pred hccccCcccccccChHHHHHHhccccCCcCCCcchhhhcccccCceeeehhhHHhhhHhhhhHHhhhhhhHH
Confidence 466999999999999999999941 2345556667777766 6666666555553
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.7e-14 Score=139.63 Aligned_cols=256 Identities=15% Similarity=0.149 Sum_probs=157.8
Q ss_pred cccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEccccc
Q 043731 70 EDTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHV 149 (498)
Q Consensus 70 ~~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~ 149 (498)
+.+.+...+|+..-.-|.+...--+|.=. .|.. ..+....|||++||..+|+.+|+++|++||.|..-||..+.
T Consensus 90 Yv~p~DAe~AintlNGLrLQ~KTIKVSyA--RPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 90 YVRPKDAEKAINTLNGLRLQNKTIKVSYA--RPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred ecChHHHHHHHhhhcceeeccceEEEEec--cCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 33445556666666667776433334322 2222 24567789999999999999999999999999999999887
Q ss_pred CCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC--eEEEEeecchhHHHHHHhH--HHHhhcCccccCCccCCCCCccC
Q 043731 150 ADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG--VELHLKPKKEFEAERAKET--EEFEKSRPAVGSNRKNNSNAEAD 223 (498)
Q Consensus 150 ~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v~~k~d~~~~k~~~~--~~~~~~~~~~~k~~~~~~~~~~~ 223 (498)
. ++.++|.+||.|+..++|+.|++. +.+--| .+|.|+........+.... ..|.... . +. .+
T Consensus 164 v-tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~----r-r~------~G 231 (360)
T KOG0145|consen 164 V-TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPA----R-RY------GG 231 (360)
T ss_pred c-cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcc----c-cC------CC
Confidence 6 688999999999999999999985 444444 3788887655443221111 0110000 0 00 00
Q ss_pred CCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCC
Q 043731 224 YPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGD 303 (498)
Q Consensus 224 ~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~ 303 (498)
.......++++...- .+.... ..-+.++ .+.|
T Consensus 232 p~hh~~~r~r~~~~~-----~~~~~~--------~rfsP~~-------------------------~d~m---------- 263 (360)
T KOG0145|consen 232 PMHHQAQRFRLDNLL-----NPHAAQ--------ARFSPMT-------------------------IDGM---------- 263 (360)
T ss_pred cccchhhhhcccccc-----chhhhh--------ccCCCcc-------------------------cccc----------
Confidence 000000011100000 000000 0000000 0000
Q ss_pred CCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHh
Q 043731 304 KSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 304 ~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
..-.|..+.+....|- -+||=||..++++.-|-++|++||.|..|.+.|+ ++.|||...+-++|.-|+++|
T Consensus 264 ~~l~~~~lp~~~~~g~--ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sL- 340 (360)
T KOG0145|consen 264 SGLAGVNLPGGPGGGW--CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL- 340 (360)
T ss_pred ceeeeeccCCCCCCee--EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHh-
Confidence 0001111122111122 3788899999999999999999999999988764 566999999999999999998
Q ss_pred hcccCCeEecCeEEEEEEcCC
Q 043731 378 LAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 378 ~~n~~g~~i~g~~~~v~~~~g 398 (498)
| |..++++.+.|..-+.
T Consensus 341 --N--Gy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 341 --N--GYRLGDRVLQVSFKTN 357 (360)
T ss_pred --c--CccccceEEEEEEecC
Confidence 4 9999999998875443
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=155.92 Aligned_cols=175 Identities=24% Similarity=0.336 Sum_probs=138.1
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCC--CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVAD--KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~--~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
+|||+||++++|.++|+..|...|.|.++.|...+.. .-.+.|||||+|.++++|+.|++. +..++|+.|.+..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988755431 123669999999999999999996 789999999876652
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
. ++ .+.. |
T Consensus 597 ~---------------k~-----------------~~~~-----------------g----------------------- 604 (725)
T KOG0110|consen 597 N---------------KP-----------------ASTV-----------------G----------------------- 604 (725)
T ss_pred C---------------cc-----------------cccc-----------------c-----------------------
Confidence 0 00 0000 0
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
+.......++.+.|+|||+..+..+++++|+.||.|..|
T Consensus 605 -----------------------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv 643 (725)
T KOG0110|consen 605 -----------------------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV 643 (725)
T ss_pred -----------------------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeee
Confidence 000001124567899999999999999999999999999
Q ss_pred EeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHH
Q 043731 351 DFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSL 407 (498)
Q Consensus 351 ~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~ 407 (498)
+++.- +|+|||.|-+|.+|..|+.+|. +..+=|+.+.++-+..+.=.+.+..
T Consensus 644 RlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~-----STHlyGRrLVLEwA~~d~~~e~~r~ 701 (725)
T KOG0110|consen 644 RLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG-----STHLYGRRLVLEWAKSDNTMEALRE 701 (725)
T ss_pred ccchhhcchhhccceeeeccCcHHHHHHHHhhc-----ccceechhhheehhccchHHHHHHH
Confidence 99853 5668999999999999999984 7889999999999877666555543
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.58 E-value=3e-15 Score=157.55 Aligned_cols=176 Identities=24% Similarity=0.302 Sum_probs=141.2
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEe
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLK 187 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~ 187 (498)
++.+.||||+-.++...+.-+|.+||+.+|+|..|+|+.+.. ++.++|.+||+|.+.+++..|+.. +..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~-s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN-SRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc-chhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 467889999999999999999999999999999999998876 678999999999999999999986 888999999987
Q ss_pred ecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCC
Q 043731 188 PKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDS 267 (498)
Q Consensus 188 ~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~ 267 (498)
.... +++.. + +... .+ +
T Consensus 254 ~sEa-------eknr~----a-------~~s~-----------a~-----------------------------~----- 270 (549)
T KOG0147|consen 254 LSEA-------EKNRA----A-------NASP-----------AL-----------------------------Q----- 270 (549)
T ss_pred ccHH-------HHHHH----H-------hccc-----------cc-----------------------------c-----
Confidence 7531 00000 0 0000 00 0
Q ss_pred CchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCce
Q 043731 268 SDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTV 347 (498)
Q Consensus 268 ~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V 347 (498)
.+.. .++..-++|+||.+.+++++|+.+|+.||.|
T Consensus 271 -----------------------------------~k~~----------~~p~~rl~vgnLHfNite~~lr~ifepfg~I 305 (549)
T KOG0147|consen 271 -----------------------------------GKGF----------TGPMRRLYVGNLHFNITEDMLRGIFEPFGKI 305 (549)
T ss_pred -----------------------------------cccc----------ccchhhhhhcccccCchHHHHhhhccCcccc
Confidence 0000 1111126899999999999999999999999
Q ss_pred EEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 348 KFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 348 ~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..|.++++ +++|||+|.+++.|.+|++.| | |+.|.|+.+.|.+++.
T Consensus 306 e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~l---n--gfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 306 ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQL---N--GFELAGRLIKVSVVTE 357 (549)
T ss_pred eeeeeccccccccccCcceEEEecHHHHHHHHHHh---c--cceecCceEEEEEeee
Confidence 99998875 456999999999999999988 4 8999999999988754
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.54 E-value=1.5e-14 Score=146.98 Aligned_cols=169 Identities=16% Similarity=0.178 Sum_probs=137.8
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~ 190 (498)
+...|||++|+++++++.|+++|++||+|..+.+++++. +++++||+||+|++++.+..+|.. .+.+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~-t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS-TGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC-CCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 568999999999999999999999999999999999987 688999999999999999999986 778888887632221
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
.... +
T Consensus 84 ~r~~--------------------------------------------------~------------------------- 88 (311)
T KOG4205|consen 84 SRED--------------------------------------------------Q------------------------- 88 (311)
T ss_pred Cccc--------------------------------------------------c-------------------------
Confidence 0000 0
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
....+......+||+.||.++++++|++.|.+||.|..+
T Consensus 89 -----------------------------------------~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~ 127 (311)
T KOG4205|consen 89 -----------------------------------------TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADV 127 (311)
T ss_pred -----------------------------------------cccccccceeEEEecCcCCCCchHHHhhhhhccceeEee
Confidence 000000123367999999999999999999999999888
Q ss_pred EeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHH
Q 043731 351 DFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKE 403 (498)
Q Consensus 351 ~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e 403 (498)
.++.+ ++.|||.|.+.++..+++..- ...|+|+.+.|+.|+.+++..
T Consensus 128 ~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~------f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 128 VIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK------FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred EEeecccccccccceeeEeccccccceecccc------eeeecCceeeEeeccchhhcc
Confidence 87644 455999999999999996642 899999999999999988775
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.9e-14 Score=141.71 Aligned_cols=167 Identities=18% Similarity=0.293 Sum_probs=129.9
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
...|||+.+.+...++.|+..|..||+|.+|.|--|.. +++.||||||||+-+|.|+-|++. +..++||.|.|-.-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP- 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP- 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc-cccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC-
Confidence 36799999999999999999999999999999988876 788999999999999999999995 88899999875211
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
++ +| +..|-
T Consensus 191 ---------------------------sN----mp------------------------------------QAQpi---- 199 (544)
T KOG0124|consen 191 ---------------------------SN----MP------------------------------------QAQPI---- 199 (544)
T ss_pred ---------------------------CC----Cc------------------------------------ccchH----
Confidence 00 00 00000
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
-+.-+++ --.+..+||..+..+.+++|||.+|+-||+|.++
T Consensus 200 ---ID~vqee------------------------------------Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 200 ---IDMVQEE------------------------------------AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred ---HHHHHHH------------------------------------HHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 0000000 0123457999999999999999999999999999
Q ss_pred EeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 351 DFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 351 ~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.+.++ ++.|||+|.+..+...|++.+++ ..++|.-+.|...
T Consensus 241 ~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNl-----FDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 241 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-----FDLGGQYLRVGKC 287 (544)
T ss_pred EeeccCCCCCccceeeEEeccccchHHHhhhcch-----hhcccceEecccc
Confidence 99875 34599999999999999999864 4466766666544
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=6.3e-14 Score=137.73 Aligned_cols=144 Identities=15% Similarity=0.248 Sum_probs=123.6
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecchh
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKEF 192 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d~ 192 (498)
.+||+|||..++..+|+.+|.+||+|..+-|++ .|+||-.++...|+-|+.+ +.+++|..|.|..++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK---------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks- 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK---------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS- 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec---------ccceEEeecccccHHHHhhcccceecceEEEEEeccc-
Confidence 589999999999999999999999999998854 5789999999999999996 7889998888654310
Q ss_pred HHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchhh
Q 043731 193 EAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAA 272 (498)
Q Consensus 193 ~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~~ 272 (498)
| +
T Consensus 74 -------------------K------s----------------------------------------------------- 75 (346)
T KOG0109|consen 74 -------------------K------S----------------------------------------------------- 75 (346)
T ss_pred -------------------c------C-----------------------------------------------------
Confidence 0 0
Q ss_pred hHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEEe
Q 043731 273 AVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDF 352 (498)
Q Consensus 273 ~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~ 352 (498)
...++++|+|+.+.++-++|++.|++||+|..+++
T Consensus 76 ---------------------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi 110 (346)
T KOG0109|consen 76 ---------------------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI 110 (346)
T ss_pred ---------------------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeee
Confidence 00124689999999999999999999999999999
Q ss_pred ecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 353 KIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 353 ~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.++ .|||.|.-.++|..|+..|. +..+.|+.+.|.+.+.
T Consensus 111 vkd--y~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 111 VKD--YAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTS 149 (346)
T ss_pred ecc--eeEEEEeeccchHHHHhccc-----ccccccceeeeeeecc
Confidence 865 99999999999999999884 8999999998877653
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.2e-13 Score=134.56 Aligned_cols=133 Identities=16% Similarity=0.087 Sum_probs=101.2
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
-+||++|...++-|+||+.|.+||+|..+.+.| +++.|||-|-+.++|+.||..| | |-.|++|.|...-
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M---n--GqWlG~R~IRTNW 138 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM---N--GQWLGRRTIRTNW 138 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh---C--Ceeeccceeeccc
Confidence 579999999999999999999999998777665 4566999999999999999998 4 9999999998777
Q ss_pred cCChhHHH---HHH-HHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 396 VTGEAEKE---YWS-LLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 396 ~~g~~E~e---~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
++-+.-.. -+. .-.-+|-.-..--.|.-+.---..++-+|..|+.||+|.--.| ..| +|+.||+
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv-Fk~-----qGYaFVr 206 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV-FKD-----QGYAFVR 206 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE-ecc-----cceEEEE
Confidence 76655111 000 0111222222333455555555678899999999999999998 777 6999996
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.44 E-value=3.8e-13 Score=123.12 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=72.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++|+++|+++|++||.|..|+|+++.. +++++|||||+|.++++|++|++. +..++|+.|.|.+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE-TGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999998875 678999999999999999999984 78899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 112 ~ 112 (144)
T PLN03134 112 N 112 (144)
T ss_pred C
Confidence 4
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.2e-12 Score=118.69 Aligned_cols=182 Identities=18% Similarity=0.211 Sum_probs=127.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++.+.+|+++|-+||.|..|.|.... .+-+||||+|+++-+|+.|+.. +..|+|..|+|..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~----g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP----GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC----CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 357899999999999999999999999999999875432 2568999999999999999984 8889999999876
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
..-.- ..+ ...|..- . +. ..|+-
T Consensus 80 prggr----------------------~s~-----~~~G~y~--------g-gg--rgGgg------------------- 102 (241)
T KOG0105|consen 80 PRGGR----------------------SSS-----DRRGSYS--------G-GG--RGGGG------------------- 102 (241)
T ss_pred ccCCC----------------------ccc-----ccccccC--------C-CC--CCCCC-------------------
Confidence 53110 000 0000000 0 00 00000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
.+...|.. .+-+.+ -|.|.+||.+-+|+|||+.+.+-|.|.
T Consensus 103 ----------------------------------~gg~rgpp----srrSe~-RVvVsGLp~SgSWQDLKDHmReaGdvC 143 (241)
T KOG0105|consen 103 ----------------------------------GGGRRGPP----SRRSEY-RVVVSGLPPSGSWQDLKDHMREAGDVC 143 (241)
T ss_pred ----------------------------------CCcccCCc----ccccce-eEEEecCCCCCchHHHHHHHHhhCCee
Confidence 00000000 011111 467899999999999999999999999
Q ss_pred EEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 349 FIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 349 ~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
|.++.++. +|.|.|-..|+.+-|+..|. +....-.|...++++-
T Consensus 144 fadv~rDg-~GvV~~~r~eDMkYAvr~ld---~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 144 FADVQRDG-VGVVEYLRKEDMKYAVRKLD---DQKFRSEGETAYIRVR 187 (241)
T ss_pred eeeeeccc-ceeeeeeehhhHHHHHHhhc---cccccCcCcEeeEEec
Confidence 99999854 89999999999999999884 2233335555555543
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=1e-12 Score=103.22 Aligned_cols=68 Identities=35% Similarity=0.512 Sum_probs=62.9
Q ss_pred EEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 116 V~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
|||+|||.++|+++|+++|++||.|..+.+.++. .+.++|+|||+|.+.++|.+|+.. +..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~--~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS--SGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET--TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc--cccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999872 577899999999999999999995 8889999875
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9.4e-13 Score=135.22 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=111.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCce------EEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES------GYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIA 391 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~ 391 (498)
...+||+-+|...++.||+++|++||.|..|.+.+++.+ .||.|.+.++|.+|+.+|. | -++|-| ..|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alh--n--~ktlpG~~~pv 109 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALH--N--QKTLPGMHHPV 109 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhh--c--ccccCCCCcce
Confidence 346799999999999999999999999999999887554 5999999999999999984 6 777777 578
Q ss_pred EEEEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 392 VLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 392 ~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
.|+.+.|+-|+- -.+.++++--|.+.......++||+.||+|.-|.+ +||+.|+|+|.+||.
T Consensus 110 qvk~Ad~E~er~-----------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i-lrd~~~~sRGcaFV~ 171 (510)
T KOG0144|consen 110 QVKYADGERERI-----------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI-LRDPDGLSRGCAFVK 171 (510)
T ss_pred eecccchhhhcc-----------ccchhhhhhhccccccHHHHHHHHHhhCccchhhh-eecccccccceeEEE
Confidence 888888855542 23456677778887778889999999999999977 999999999999997
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.32 E-value=1.4e-11 Score=123.85 Aligned_cols=192 Identities=19% Similarity=0.154 Sum_probs=125.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee--------EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS--------VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~--------Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
..+..|||+|||.++|.+++.++|++||-|.. |.|.++. .++++|-|.+.|-..+++.-|++. ...+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~--~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN--QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC--CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34566999999999999999999999998763 5565664 378999999999999999999995 77889
Q ss_pred CeEEEEeecc-----hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCC
Q 043731 181 GVELHLKPKK-----EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDS 255 (498)
Q Consensus 181 G~~l~v~~k~-----d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~ 255 (498)
|+.|+|..+. +|...+.. ++..... ++..
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~---------------------------k~k~~~~--kk~~----------------- 243 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKE---------------------------KGKCKDK--KKLK----------------- 243 (382)
T ss_pred CcEEEEehhhhhhccCcCccccc---------------------------ccccccH--HHHH-----------------
Confidence 9999987542 11110000 0000000 0000
Q ss_pred cCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCC--C--cc
Q 043731 256 ENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDN--M--DV 331 (498)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL--~--~~ 331 (498)
...++.-.- ..+. + +.++.--..+|.++|+ | +.
T Consensus 244 -------------------k~q~k~~dw-~pd~-~----------------------~~sk~r~~~tVi~kn~Ftp~~~~ 280 (382)
T KOG1548|consen 244 -------------------KQQQKLLDW-RPDR-D----------------------DPSKARADRTVILKNMFTPEDFE 280 (382)
T ss_pred -------------------HHHHhhccc-CCCc-c----------------------ccccccCCcEEEeeecCCHHHhc
Confidence 000000000 0000 0 0000001123344444 1 11
Q ss_pred cc-------HHHHHHHhccCCceEEEEee--cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 332 VM-------REDLKSVFHKFGTVKFIDFK--IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 332 vt-------~EdLke~F~~fG~V~~V~~~--~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+ .|+|.+-+++||.|..|.+- ...|-+-|+|.+++.|..|+..|. |+.++|+.|+..+..|
T Consensus 281 ~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~-----GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 281 KNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMD-----GRWFDGRQLTASIWDG 351 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhc-----CeeecceEEEEEEeCC
Confidence 22 47888999999999998776 345568899999999999999984 9999999999999877
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=5.6e-12 Score=124.48 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=71.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~ 190 (498)
..++|||+|||+.+|+++|++||+.||+|.+|+|+++.. .+|||||+|.++++|+.||.. +..+.|+.|.|.+..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~----~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE----RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC----CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 358999999999999999999999999999999998742 479999999999999999985 899999999999987
Q ss_pred hhH
Q 043731 191 EFE 193 (498)
Q Consensus 191 d~~ 193 (498)
+|.
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 654
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=1.9e-11 Score=129.28 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.0
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.+.|||+||.+++++++|+.+|++||.|..|.++++.. ++..+||+||+|.+.++|.+|+.. +..+.|+.|.|-...
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~-tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE-TGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccc-cccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 34499999999999999999999999999999999864 688999999999999999999884 889999999976544
Q ss_pred h
Q 043731 191 E 191 (498)
Q Consensus 191 d 191 (498)
+
T Consensus 357 ~ 357 (549)
T KOG0147|consen 357 E 357 (549)
T ss_pred e
Confidence 3
No 60
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.29 E-value=1.6e-11 Score=128.28 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=116.1
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCC-eEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAG-VELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G-~~l~v~~k~ 190 (498)
...-|.+++|||++|+++|.+||+.|+ |.++.++|. +++..|-|||||.+++++++||+......| +-|.|....
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 345688999999999999999999997 566767665 467899999999999999999997554444 444443321
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
. ..+.+. ++ +.+.
T Consensus 85 ~-----~e~d~~-------------------------------~~---------~~g~---------------------- 97 (510)
T KOG4211|consen 85 G-----AEADWV-------------------------------MR---------PGGP---------------------- 97 (510)
T ss_pred C-----cccccc-------------------------------cc---------CCCC----------------------
Confidence 0 000000 00 0000
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE-
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF- 349 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~- 349 (498)
.+. .....|=++.||+.||++||.+.|+..-.|.-
T Consensus 98 -----------------------------------------~s~---~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~g 133 (510)
T KOG4211|consen 98 -----------------------------------------NSS---ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDG 133 (510)
T ss_pred -----------------------------------------CCC---CCCceEEecCCCccCcHHHHHHHhcCCcccccc
Confidence 000 01113445899999999999999998765443
Q ss_pred ---EEeecCC--ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHH
Q 043731 350 ---IDFKIGA--ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYW 405 (498)
Q Consensus 350 ---V~~~~g~--~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~ 405 (498)
+.-.+++ +.|||+|++++.|++|+..- ...|+-+=|.|-.+.-.+.+.+-
T Consensus 134 i~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh------re~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 134 ILLPMDQRGRPTGEAFVQFESQESAEIALGRH------RENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred eeeeccCCCCcccceEEEecCHHHHHHHHHHH------HHhhccceEEeehhHHHHHHhhc
Confidence 3333444 34899999999999998763 45577777777666665555543
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=1e-11 Score=98.58 Aligned_cols=68 Identities=34% Similarity=0.453 Sum_probs=60.6
Q ss_pred EEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 116 V~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
|||+|||++++.++|+++|+.||.|..|++.+++. +.++|+|||+|.++++|.+|+.. +..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~--~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD--GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT--SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec--cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998754 67899999999999999999996 5889999874
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.28 E-value=1.8e-10 Score=110.42 Aligned_cols=189 Identities=18% Similarity=0.175 Sum_probs=121.7
Q ss_pred cceEEeccCCCCCcHHHHHH----HhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 113 VRTIAATPLEYDVKREDVEA----FFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~----~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
..||||.||+..+..++|+. +|++||+|..|...+. .+.+|-|||.|.+.+.|..|+.. +..|-|++++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt----~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT----PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC----CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 34999999999999999887 9999999999998764 45789999999999999999995 88899999998
Q ss_pred eecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCC
Q 043731 187 KPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPD 266 (498)
Q Consensus 187 ~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~ 266 (498)
+++..-.+-... ++|..+. +-++...... ...+.....|...........|.
T Consensus 85 qyA~s~sdii~~--------------------------~~~~~v~-~~~k~~~~~~-~~~~~~~~~ng~~~~~~~~~~p~ 136 (221)
T KOG4206|consen 85 QYAKSDSDIIAQ--------------------------APGTFVE-KEKKINGEIL-ARIKQPLDTNGHFYNMNRMNLPP 136 (221)
T ss_pred ecccCccchhhc--------------------------cCceecc-ccCccccccc-cccCCcccccccccccccccCCC
Confidence 876421111000 1111110 0000000000 00000000000000000000000
Q ss_pred CCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCc
Q 043731 267 SSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGT 346 (498)
Q Consensus 267 ~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~ 346 (498)
+++ ...-..+..+|+-|||..++.+.|..+|.+|.-
T Consensus 137 ------------------------------------------p~~--~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g 172 (221)
T KOG4206|consen 137 ------------------------------------------PFL--AQMAPPNNILFLTNIPSESESEMLSDLFEQFPG 172 (221)
T ss_pred ------------------------------------------Ccc--ccCCCCceEEEEecCCcchhHHHHHHHHhhCcc
Confidence 000 111234557899999999999999999999987
Q ss_pred eEEEEeecC-CceEEEEeCCHHHHHHHHHHHh
Q 043731 347 VKFIDFKIG-AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 347 V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
.+.|++.++ .+.|||.|.+.-.|.-|..++.
T Consensus 173 ~keir~i~~~~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 173 FKEIRLIPPRSGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred cceeEeccCCCceeEEecchhhhhHHHhhhhc
Confidence 777777664 4569999999999999988874
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=108.83 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=76.4
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
-..+.||||+||.+.+++++|.++|+.||.|..|.|-.++- ++.++||+||+|.+.++|..||+- +..++.++|.+.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-CcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45678999999999999999999999999999999887765 678999999999999999999994 888999999998
Q ss_pred ecchhHH
Q 043731 188 PKKEFEA 194 (498)
Q Consensus 188 ~k~d~~~ 194 (498)
|..-|.+
T Consensus 112 ~D~GF~e 118 (153)
T KOG0121|consen 112 WDAGFVE 118 (153)
T ss_pred ccccchh
Confidence 8876665
No 64
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.19 E-value=7.2e-11 Score=108.08 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
.+.|||+|||..+++++|+++|++||.|..|.+..+ ++.|||+|.++++|++|++.+ | +..|+|+.|.|
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l---n--g~~i~Gr~l~V 108 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM---D--GKELNGRHIRV 108 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc---C--CCEECCEEEEE
Confidence 447999999999999999999999999999998754 567999999999999999987 4 88999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+..
T Consensus 109 ~~a~~ 113 (144)
T PLN03134 109 NPAND 113 (144)
T ss_pred EeCCc
Confidence 98865
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.18 E-value=6.8e-11 Score=92.78 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=58.8
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
|||+|||..+|+++|+++|++||.|..+.+.+. .+.|||+|.++++|++|++.++ |..++|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 589999999999999999999999999998874 4459999999999999999984 8999998873
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=7.2e-11 Score=115.06 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=70.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~ 190 (498)
...||||+||++.+|+++|++||+.||+|.+|+|+++. ..+|+|||+|.++++|+.|+.. +..+.|++|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~----et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG----EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC----CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 46899999999999999999999999999999999883 3468999999999999999985 899999999998876
Q ss_pred hhH
Q 043731 191 EFE 193 (498)
Q Consensus 191 d~~ 193 (498)
+|.
T Consensus 80 ~y~ 82 (243)
T PLN03121 80 QYE 82 (243)
T ss_pred ccc
Confidence 554
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3.5e-11 Score=115.78 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=69.5
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
-..|||+||||.++.+.|+++|++||+|+...++.|+. ++++|||+||+|.+.++|.+|++. ...++||.-.+...
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~-t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN-TGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC-CccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 46799999999999999999999999999999999986 788999999999999999999997 78899998776543
No 68
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1.7e-10 Score=89.31 Aligned_cols=69 Identities=35% Similarity=0.529 Sum_probs=62.7
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
+|||+|||..++.++|+++|.+||.|..+++.++. +.++|+|||+|.+.++|+.|+.. +..++|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT---GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 68999999999999999999999999999998764 45789999999999999999985 68889998875
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-10 Score=112.37 Aligned_cols=79 Identities=27% Similarity=0.400 Sum_probs=72.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
.+..||.|.|||.++++++|+++|.+||.|..|.|.+++. ++.++|||||+|.+.++|.+|++. +.-|+.--|.|.|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~-TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE-TGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccc-cCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3667899999999999999999999999999999999987 899999999999999999999995 7778888888988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
++
T Consensus 266 sk 267 (270)
T KOG0122|consen 266 SK 267 (270)
T ss_pred cC
Confidence 75
No 70
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=1.3e-10 Score=108.00 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=110.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++|++||+.-++++-|.++|-+.|.|..+.++++ ++.|||+|.+.|+|+-|+.-|+ ++.|=|+.|.|.
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-----~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-----MVKLYGRPIRVN 84 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-----HHHhcCceeEEE
Confidence 47899999999999999999999999999988764 5669999999999999999884 899999999999
Q ss_pred EcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCC-CCCCCccccc
Q 043731 395 PVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKP-GISSGTSFVR 465 (498)
Q Consensus 395 ~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 465 (498)
.+.... ..--.+-|+-++||+.+++..-|-.+|+-+|+|-+.--+|||+. |-++|+|||.
T Consensus 85 kas~~~-----------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~ 145 (203)
T KOG0131|consen 85 KASAHQ-----------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFIN 145 (203)
T ss_pred eccccc-----------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEe
Confidence 987211 11122478889999999999999999999999988655589986 8888899985
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.10 E-value=1.8e-09 Score=103.14 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=58.9
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC---CeEEEE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA---GVELHL 186 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~---G~~l~v 186 (498)
.-|||||.|||.++..-+|..+|..|---+...|.......+-.+-+|||+|.+..+|..|++. +..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4699999999999999999999999865566555433222334568999999999999999985 55553 346666
Q ss_pred eec
Q 043731 187 KPK 189 (498)
Q Consensus 187 ~~k 189 (498)
...
T Consensus 113 ElA 115 (284)
T KOG1457|consen 113 ELA 115 (284)
T ss_pred eeh
Confidence 554
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=3.6e-10 Score=117.88 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=74.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCH--HHHHHHHHh--CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTE--EDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~--e~A~kAl~~--~~~~~G~~l~v 186 (498)
....+|||+||++++|+++|+.+|++||.|.+|.|+|. ++ +|||||+|.+. .++.+|+.. +..|+|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE---TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT---KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc---cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 44578999999999999999999999999999999965 34 89999999987 689999995 89999999999
Q ss_pred eecch-hHHHHHHhHHH
Q 043731 187 KPKKE-FEAERAKETEE 202 (498)
Q Consensus 187 ~~k~d-~~~~k~~~~~~ 202 (498)
..++. |..+-..+.++
T Consensus 83 NKAKP~YLeRLkrERee 99 (759)
T PLN03213 83 EKAKEHYLARLKREWEA 99 (759)
T ss_pred eeccHHHHHHHHHHHHH
Confidence 98765 55554444443
No 73
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=2.6e-10 Score=110.06 Aligned_cols=170 Identities=21% Similarity=0.292 Sum_probs=121.2
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecch
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKE 191 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d 191 (498)
..|||++||+.+.+.+|+.||..||.+..|.|. .||+||+|.++-+|.-|+.. +..|.|-.+.+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 368999999999999999999999999999762 48899999999999999974 6666666555544321
Q ss_pred hHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchh
Q 043731 192 FEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNA 271 (498)
Q Consensus 192 ~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~ 271 (498)
..-.. ++ + .++.... ....
T Consensus 73 ~~~~~--------------g~------------~--------------------~~g~r~~------~~~~--------- 91 (216)
T KOG0106|consen 73 KRRGR--------------GR------------P--------------------RGGDRRS------DSRR--------- 91 (216)
T ss_pred ccccc--------------CC------------C--------------------CCCCccc------hhhc---------
Confidence 00000 00 0 0000000 0000
Q ss_pred hhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEE
Q 043731 272 AAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFID 351 (498)
Q Consensus 272 ~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~ 351 (498)
........+ -+++.|++..+++.+|++.|.++|.+.+++
T Consensus 92 ----------------------------------------~~~p~~s~~-r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 92 ----------------------------------------YRPPSRTHF-RLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ----------------------------------------cCCcccccc-eeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 000000111 356789999999999999999999998877
Q ss_pred eecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhH
Q 043731 352 FKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAE 401 (498)
Q Consensus 352 ~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E 401 (498)
.+ ...|||+|.+.++|.+|++.+. |..+.|+.+++.....+..
T Consensus 131 ~~--~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 131 AR--RNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred hh--ccccceeehhhhhhhhcchhcc-----chhhcCceeeecccCcchh
Confidence 63 4589999999999999999985 9999999999966655444
No 74
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.6e-10 Score=111.90 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=72.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
-.-+||||.-|++++++..|+..|+.||+|..|+|++++. +++++|||||+|+.+-+...|.+. +++++|+.|.|..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~v-TgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKV-TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecc-cCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3468999999999999999999999999999999999987 789999999999999999999996 8999999999865
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=6.4e-10 Score=85.56 Aligned_cols=68 Identities=38% Similarity=0.493 Sum_probs=61.0
Q ss_pred eccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 118 V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
|+|||..++.++|+++|++||.|..+.++++.. ++.++|+|||+|.+.++|.+|+.. +..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~-~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD-TGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC-CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999988764 467899999999999999999985 57788888875
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.04 E-value=6e-09 Score=107.59 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=68.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhcc-CCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQ-HVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~-~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
...|++||.|+|+++...+|+++|.. .|+|+.|.+..|.. ++++|||.|||+++|.+++|++. ...++|++|.|+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~--GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES--GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC--CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34588999999999999999999975 69999999998864 78999999999999999999995 788999999975
Q ss_pred ec
Q 043731 188 PK 189 (498)
Q Consensus 188 ~k 189 (498)
-.
T Consensus 120 Ed 121 (608)
T KOG4212|consen 120 ED 121 (608)
T ss_pred cc
Confidence 43
No 77
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.04 E-value=1.2e-09 Score=84.80 Aligned_cols=71 Identities=39% Similarity=0.497 Sum_probs=63.8
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
+|+|+|||..++.++|+++|..||.|..+.++++.. ..++|+|||+|.+.++|..|+.. +..++|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~--~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD--TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 589999999999999999999999999999988754 25789999999999999999995 666899998875
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=3.2e-10 Score=113.49 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=70.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
.-.+.|+|+|||+..-+-||+.+|.+||.|.+|.|+.+ .|-+|||+||+|++++||++|-.+ +..+.||+|.|..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN---ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN---ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec---cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 34578999999999999999999999999999999987 455899999999999999999986 8999999999876
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 171 AT 172 (376)
T KOG0125|consen 171 AT 172 (376)
T ss_pred cc
Confidence 54
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.02 E-value=8.8e-10 Score=106.16 Aligned_cols=77 Identities=32% Similarity=0.458 Sum_probs=71.8
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.++|||+|||+++|+++|+++|.+||.|..|+|+++.. ++.++|+|||+|.++++|..|+.. +..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~-~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE-TGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc-cCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 59999999999999999999999999999999999874 678999999999999999999996 689999999998864
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=6.6e-10 Score=102.72 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=65.9
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.+.|||+||+..++..+|+..|..||++.+|.|-+. +-|||||||+++-+|+.|+.. +..+.|..|.|.+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 578999999999999999999999999999999775 459999999999999999984 888999999998864
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=3.7e-09 Score=90.02 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=66.5
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..|-|||+|||+++|.+++.++|++||.|..|||--.+ .-+|.|||.|++..+|.+|+.. +..+.++.|.|..=
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k----~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK----ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc----CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 46899999999999999999999999999999986543 3579999999999999999996 77889999998754
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 3
No 82
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.99 E-value=2e-09 Score=85.25 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=56.8
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
|||+|||..++.++|.++|+.||.|..|.+.+.+ +.|||+|.++++|.+|+..+ + |..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~---~--~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL---N--GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH---T--TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC---C--CcEECCEEcC
Confidence 5889999999999999999999999999998773 56999999999999999986 3 8999999874
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.98 E-value=6e-10 Score=105.35 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=71.8
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..+|.|-||.+-++.++|+.+|++||.|-.|.||++.. ++.++|||||-|....+|+.|++. +.+++|+.|.|++.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~-Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY-TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccc-cccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 46899999999999999999999999999999999987 789999999999999999999996 89999999999875
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=98.97 E-value=2.6e-09 Score=82.57 Aligned_cols=66 Identities=26% Similarity=0.296 Sum_probs=60.5
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCC----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
++++|||..+++++|+++|++||.|.++.+.+.. +.|||+|.++++|++|+..+. |..+.|+.+.|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEee
Confidence 6889999999999999999999999999998876 789999999999999998873 78899998876
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.96 E-value=1.9e-09 Score=106.66 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=64.8
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCC---ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA---ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~---~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
.+|||+|||+.+++++|+++|+.||.|..|.+.+++ ++|||.|+++++|++|+. | | |..|.|+.|.|.++.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-L---n--G~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-L---S--GATIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-h---c--CCeeCCceEEEEecc
Confidence 368999999999999999999999999999998753 679999999999999995 5 4 899999999999986
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=3.4e-09 Score=102.12 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=107.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|||..+++++|.++|.+||.|..|.+..+. +.|||.|.++++|..|+..+. |..+.|+.+.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-----~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-----GKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-----CCeECCceeEe
Confidence 3579999999999999999999999999888887654 669999999999999999873 89999999999
Q ss_pred EEcCC-hhHHHHHH-----------HHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCc
Q 043731 394 EPVTG-EAEKEYWS-----------LLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGT 461 (498)
Q Consensus 394 ~~~~g-~~E~e~~~-----------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (498)
..++. ...+..+. ..............+..++........+...|...|.|....+.-........+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (306)
T COG0724 190 QKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSR 269 (306)
T ss_pred eccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccc
Confidence 99653 22222222 1122333445777888899999999999999999999977666333333334555
Q ss_pred cc
Q 043731 462 SF 463 (498)
Q Consensus 462 ~~ 463 (498)
++
T Consensus 270 ~~ 271 (306)
T COG0724 270 SF 271 (306)
T ss_pred cc
Confidence 55
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.6e-10 Score=107.26 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=74.1
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
++-=|||+|||++.|+.+|.-+|++||+|.+|.+.||+. |++++||||..|++.-+.--|+.+ +..+.||.|+|.--
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~-TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK-TGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC-CCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456799999999999999999999999999999999986 899999999999999999999986 89999999998755
Q ss_pred chhHHH
Q 043731 190 KEFEAE 195 (498)
Q Consensus 190 ~d~~~~ 195 (498)
..|...
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 444443
No 88
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.3e-09 Score=99.18 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=69.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec-CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI-GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~-g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+.|||+||+..++..+|..+|..||.+..|-+.+ .+++|||+|+++-+|+.|+..|. |..|+|..|.|++.+|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcC-----CccccCceEEEEeecC
Confidence 45799999999999999999999999997776654 46789999999999999999984 9999999999999999
Q ss_pred hhH
Q 043731 399 EAE 401 (498)
Q Consensus 399 ~~E 401 (498)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 655
No 89
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.3e-09 Score=108.47 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=107.3
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEee------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.+||+.+++.+-++.|+..|..||.|++|+.. ..+++|||+|+=||+|+-|++.+ | |..++||.+.|.+
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqM---N--g~mlGGRNiKVgr 189 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQM---N--GQMLGGRNIKVGR 189 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHh---c--cccccCccccccC
Confidence 58999999999999999999999999999875 34667999999999999999998 4 9999999999986
Q ss_pred cCChhHHH-HHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCC-CCCCCcccccc
Q 043731 396 VTGEAEKE-YWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKP-GISSGTSFVRP 466 (498)
Q Consensus 396 ~~g~~E~e-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 466 (498)
-+.=.-.+ -...+.+-..+| +|-|+...--+-.++.++.+|--||.|.+|+. -|++. +-.+|+||+-=
T Consensus 190 PsNmpQAQpiID~vqeeAk~f--nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKF--NRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEY 259 (544)
T ss_pred CCCCcccchHHHHHHHHHHhh--heEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEe
Confidence 54422222 111111112222 45677766667778899999999999999999 77775 46799999753
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=9.3e-09 Score=100.56 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=65.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh---CCeeCCe--EEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ---GLFYAGV--ELH 185 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~---~~~~~G~--~l~ 185 (498)
-+.|.|||+-|...-.++|++.+|..||.|..+.+.|... +.+||||||.|.+.-+|+.|+.. ..++-|. .|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d--g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD--GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC--CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 4678999999999999999999999999999999988764 67899999999999999999985 4455553 555
Q ss_pred Eeec
Q 043731 186 LKPK 189 (498)
Q Consensus 186 v~~k 189 (498)
|+..
T Consensus 95 VK~A 98 (371)
T KOG0146|consen 95 VKFA 98 (371)
T ss_pred EEec
Confidence 6554
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.84 E-value=8.9e-09 Score=100.57 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=64.9
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCC---ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA---ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~---~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
.++||+||++.+|+++|+++|+.||+|.+|.+.++. +.|||+|+++++|+.|+. | | |..|.|+.|.+.++.
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-L---n--Ga~l~d~~I~It~~~ 79 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-L---S--GATIVDQRVCITRWG 79 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-c---C--CCeeCCceEEEEeCc
Confidence 478999999999999999999999999999998865 459999999999999984 4 4 999999999999976
Q ss_pred C
Q 043731 398 G 398 (498)
Q Consensus 398 g 398 (498)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2e-08 Score=85.69 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=70.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec---CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI---GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~---g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+..+||+|||+.+|.|+.-++|++||+|+-|++.- .+|+|||.+++..+|.+|++.|. |..+.++-+.|-..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhc-----ccccCCceEEEEec
Confidence 44789999999999999999999999999999863 46779999999999999999985 88999999999888
Q ss_pred CChhHHHH
Q 043731 397 TGEAEKEY 404 (498)
Q Consensus 397 ~g~~E~e~ 404 (498)
+...+.+.
T Consensus 93 q~~~~~~~ 100 (124)
T KOG0114|consen 93 QPEDAFKL 100 (124)
T ss_pred CHHHHHHH
Confidence 77555443
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.83 E-value=7.7e-09 Score=109.81 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=73.5
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecch
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKE 191 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d 191 (498)
++|||+|+|+++++++|..+|+..|.|.++++..|.. +++++||+|++|.+.++|..|++. +..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~-tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRE-TGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccccc-CCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999986 788999999999999999999996 8999999999988754
Q ss_pred h
Q 043731 192 F 192 (498)
Q Consensus 192 ~ 192 (498)
.
T Consensus 98 ~ 98 (435)
T KOG0108|consen 98 R 98 (435)
T ss_pred c
Confidence 3
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=98.82 E-value=1.1e-08 Score=107.13 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=84.9
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeec--CCceEEEEeCCH--HHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI--GAESGYIRFEEP--EGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~--g~~~GfV~F~~~--e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
..+|||||++.+++++|..+|++||.|..|.|+| |+++|||.|.++ .++.+|++.|+ |..+.|+.|.|..+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLN-----GAEWKGR~LKVNKA 85 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGGRLRLEKA 85 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhc-----CCeecCceeEEeec
Confidence 4689999999999999999999999999999986 677899999988 78999999994 99999999999987
Q ss_pred CChhHHHHHHHHhhhhhccc-cccccchhhhhhhhhhhhhhhcccCCCccceee
Q 043731 397 TGEAEKEYWSLLRGNQERHR-DVKGEEKHLEAENKAASEKMIQQEDAQIKPGKF 449 (498)
Q Consensus 397 ~g~~E~e~~~~~~~~~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (498)
.. .|+.+++.-..... .....++--.+.-...+|+-.|-.-+.+++--|
T Consensus 86 KP----~YLeRLkrEReea~s~~~~~~kl~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 86 KE----HYLARLKREWEAASSTSDNTIKAPSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred cH----HHHHHHHHHHHHhhccccccccccccCCccceeeEecccccccccccc
Confidence 43 25544332111111 011112212223344566666666666665444
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.77 E-value=3.8e-08 Score=74.95 Aligned_cols=54 Identities=28% Similarity=0.277 Sum_probs=49.2
Q ss_pred HHHHhccCCceEEEEeecCC-ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 337 LKSVFHKFGTVKFIDFKIGA-ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 337 Lke~F~~fG~V~~V~~~~g~-~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
|.++|++||+|..|.+.+.. +.|||+|.++++|.+|++.++ |..++|+.|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEE
Confidence 68999999999999999887 889999999999999999984 8999999999875
No 96
>smart00360 RRM RNA recognition motif.
Probab=98.76 E-value=2.8e-08 Score=76.31 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=56.7
Q ss_pred ccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 325 YKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 325 v~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
++|||..+++++|+++|++||.|..+.+.+.. +.|||+|.++++|.+|+..+ + +..++|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~---~--~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL---N--GKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc---C--CCeeCCcEEEe
Confidence 46899999999999999999999999888764 47999999999999999887 3 78889988876
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.4e-08 Score=90.35 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.6
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
.++..-|||.++...+|+++|.+.|..||+|.+|++-.+.. ++-.+|||.|+|++.++|++|+.. +..+.|++|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRR-tGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRR-TGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccc-cccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45677899999999999999999999999999999988875 788999999999999999999995 788999999998
Q ss_pred ec
Q 043731 188 PK 189 (498)
Q Consensus 188 ~k 189 (498)
|.
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 86
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.73 E-value=4.2e-08 Score=74.76 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=47.1
Q ss_pred HHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 130 VEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 130 L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
|.++|++||+|..|.+.+.. .|+|||+|.+.++|.+|+.. +..++|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997642 59999999999999999994 88999999998763
No 99
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=2.4e-08 Score=100.30 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=66.8
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEee---c-CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK---I-GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~---~-g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.-+.|.|+||.--+-||+.+|++||.|..|+|. | ++|+|||.|+++++|++|+++|. |..|.||+|.|..+
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELH-----GTVVEGRKIEVNNA 171 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhh-----cceeeceEEEEecc
Confidence 357899999999999999999999999998875 3 46679999999999999999995 99999999999998
Q ss_pred CCh
Q 043731 397 TGE 399 (498)
Q Consensus 397 ~g~ 399 (498)
+-.
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 864
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.2e-08 Score=97.42 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...|||||++|..++|+.-|...|-+||.|..|.||.|.. +.+.+||+||+|.-.|+|..|+.+ ...+-|+.|+|..
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDye-sqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYE-SQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchh-cccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3579999999999999999999999999999999999986 677899999999999999999996 7889999999977
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
.+
T Consensus 87 Ak 88 (298)
T KOG0111|consen 87 AK 88 (298)
T ss_pred cC
Confidence 54
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=4.7e-08 Score=78.22 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=50.2
Q ss_pred HHHHHHHhc----cCCceeeEE-cccccCC-CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 127 REDVEAFFS----QHVKVNSVR-LPRHVAD-KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 127 ~e~L~~~F~----~~G~V~~Vr-i~r~~~~-~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
+++|+++|+ +||.|.+|. |+.+... +++++|+|||+|.+.++|.+|+.. +..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999985 5554432 267899999999999999999995 88899999875
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.69 E-value=9.3e-08 Score=74.09 Aligned_cols=67 Identities=27% Similarity=0.303 Sum_probs=60.0
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
++++|||..+++++|+++|+.||.|..+.+.+. .+.|||+|.++++|..|+..+. +..++|+.+.|.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~ 73 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVE 73 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEe
Confidence 578999999999999999999999999988865 4679999999999999999873 777999998875
No 103
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2e-08 Score=97.01 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=64.2
Q ss_pred ccCcceeeeccCCCccccHHHHHHHhccCCceEEEEee------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe
Q 043731 316 KEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389 (498)
Q Consensus 316 ~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~ 389 (498)
.+...+.|||++|++.+..|.|+..|++||+|..+.+. |+++.|||.|.|.++|.+|.+. ..-.|+||
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d------p~piIdGR 81 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD------PNPIIDGR 81 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC------CCCccccc
Confidence 34466789999999999999999999999999876654 4667799999999999999764 37789999
Q ss_pred EEEEEEc
Q 043731 390 IAVLEPV 396 (498)
Q Consensus 390 ~~~v~~~ 396 (498)
+..+.++
T Consensus 82 ~aNcnlA 88 (247)
T KOG0149|consen 82 KANCNLA 88 (247)
T ss_pred ccccchh
Confidence 9988876
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=4.5e-08 Score=96.93 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=95.6
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAE 401 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E 401 (498)
.+||+|||..++..+|+.+|++||+|..+||.+. .|||..++..+|+-|+.-|. |.+|.|..|.|+....+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--YgFVHiEdktaaedairNLh-----gYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--YGFVHIEDKTAAEDAIRNLH-----GYTLHGVNINVEASKSK-- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--cceEEeecccccHHHHhhcc-----cceecceEEEEEecccc--
Confidence 5799999999999999999999999999999966 89999999999999998773 99999999999987654
Q ss_pred HHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCcccc
Q 043731 402 KEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFV 464 (498)
Q Consensus 402 ~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (498)
.... -++-+-|+...-.+.-+|+.|+.+|.+.-|++ . ++.+||
T Consensus 75 -------sk~s-----tkl~vgNis~tctn~ElRa~fe~ygpviecdi-v-------kdy~fv 117 (346)
T KOG0109|consen 75 -------SKAS-----TKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V-------KDYAFV 117 (346)
T ss_pred -------CCCc-----cccccCCCCccccCHHHhhhhcccCCceeeee-e-------cceeEE
Confidence 1111 23344557777778889999999999999987 3 456776
No 105
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.64 E-value=2.3e-07 Score=95.49 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=121.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEe
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLK 187 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~ 187 (498)
..+-|.++|||+++++++|.+++.+||+|+++.+.+. +.-||++|.++++|..-+.- ...+.|++|-|+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4688999999999999999999999999999988763 23699999999999885552 566888998877
Q ss_pred ecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCC
Q 043731 188 PKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDS 267 (498)
Q Consensus 188 ~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~ 267 (498)
.+....- + ....+ ++ .+|-.+.... + ..++.+..
T Consensus 100 ~sn~~~l-k-------t~s~p----~q----------~r~~~vy~~~---s---------------------~~q~~~~~ 133 (492)
T KOG1190|consen 100 YSNHSEL-K-------TDSQP----NQ----------IRGQAVYQAV---S---------------------SVQEIVLP 133 (492)
T ss_pred hhhHHHH-h-------ccCch----hh----------hhhhhHHhhh---h---------------------cccccccc
Confidence 6421000 0 00000 00 0011010000 0 00000000
Q ss_pred CchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCc--ceeeeccCCCccccHHHHHHHhccCC
Q 043731 268 SDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGK--TSIDTYKDNMDVVMREDLKSVFHKFG 345 (498)
Q Consensus 268 ~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~--~~~vfv~nL~~~vt~EdLke~F~~fG 345 (498)
+...... .| ...++ -..+++.|+.+.+|-+-|.++|++||
T Consensus 134 --------------------------------~s~~~~~-----~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG 175 (492)
T KOG1190|consen 134 --------------------------------LSASAVV-----VG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFG 175 (492)
T ss_pred --------------------------------ccccccc-----cc-ccCCCceeEEEEeccceeeeEHHHHHHHHhhcc
Confidence 0000000 00 00111 12468899999999999999999999
Q ss_pred ceEE-EEeecCCce-EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 346 TVKF-IDFKIGAES-GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 346 ~V~~-V~~~~g~~~-GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.|.. |.|.+..++ |.|+|.+++.|+.|..+|. |..|=+--+++++
T Consensus 176 ~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLd-----GqnIyngcCtLrI 222 (492)
T KOG1190|consen 176 FVLKIITFTKNNGFQALVQYTDAVSAQAAKLALD-----GQNIYNGCCTLRI 222 (492)
T ss_pred eeEEEEEEecccchhhhhhccchhhHHHHHHhcc-----CCcccCceeEEEe
Confidence 9866 567777776 8999999999999998884 5555555555554
No 106
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=1.2e-07 Score=98.58 Aligned_cols=152 Identities=21% Similarity=0.304 Sum_probs=98.4
Q ss_pred ChHHHhhhCCCCCCceehHHHhcc-hhhHhhhccCCCCCCCCCcccHHHHHHHHhh--cCcceeecCcceeecccCCcch
Q 043731 28 DEFLRGKISESSDAMVSLALICSF-KRMKEHLHLGNVKSEDIPEDTLEAVAETLRK--SSSLKLSEDGMKVGRSAELPTA 104 (498)
Q Consensus 28 D~fL~~~~~~~~~g~V~l~~i~~F-~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~--S~~leVsedg~kVrR~~~~~~~ 104 (498)
|.+|. .|.+-.+|.|.+.+..+= +++|+-- +..|-..+=...+.|=++ +..+.|-...-.|-=..|...|
T Consensus 179 eeIle-e~~kVteGVvdVivy~~p~dk~KNRG------FaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 179 EEILE-EMKKVTEGVVDVIVYPSPDDKTKNRG------FAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHHHH-HHHhhCCCeeEEEEecCccccccccc------eEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 44443 455567898888777544 3443320 001111111111111111 1233444444445544555544
Q ss_pred hhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCe
Q 043731 105 EEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGV 182 (498)
Q Consensus 105 ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~ 182 (498)
++. .-..-+-|||+||+.++|++.|+++|++||.|..|..+| -||||-|.+.++|-+||++ +..++|.
T Consensus 252 ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r---------DYaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 252 DED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR---------DYAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred Chh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc---------ceeEEeecchHHHHHHHHHhcCceecCc
Confidence 432 123346799999999999999999999999999997765 3899999999999999995 8999999
Q ss_pred EEEEeecchhHHHH
Q 043731 183 ELHLKPKKEFEAER 196 (498)
Q Consensus 183 ~l~v~~k~d~~~~k 196 (498)
.|.|...+....++
T Consensus 322 ~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKK 335 (506)
T ss_pred eEEEEecCChhhhc
Confidence 99999887655443
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=2.2e-07 Score=99.67 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=68.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
....+||++||...+++++.++...||.+...++..+.. ++.++||||.+|.++.-...|+.. +..+.+..|.|+..
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~-~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA-TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc-cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 346799999999999999999999999999999988876 577999999999999999999985 77788888887654
No 108
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.58 E-value=5.6e-08 Score=92.16 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=63.4
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.+-|.||.+.|+.++|..+|++||.|--|.|+++ .++|||+|.+..+|+.|+++|. |.+|+|++|.|.+
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgRelrVq~ 89 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGRELRVQM 89 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccceeeehh
Confidence 4567899999999999999999999999999875 4569999999999999999984 9999999999987
Q ss_pred c
Q 043731 396 V 396 (498)
Q Consensus 396 ~ 396 (498)
+
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 6
No 109
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.52 E-value=3.7e-07 Score=94.63 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=105.1
Q ss_pred ceeeeccCCCccccHHHHHHHhcc-CCceEEEEeec-----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHK-FGTVKFIDFKI-----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~-fG~V~~V~~~~-----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+|+-|+|+++-|++||++|.+ -|+|+||.+-- .+++|.|+|+++|.++||++.|+ ...+.|++|.|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~ln-----k~~~~GR~l~v 118 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLN-----KYEVNGRELVV 118 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhh-----hccccCceEEE
Confidence 345999999999999999999985 79999999864 45679999999999999999995 77899999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
+---+ +|+..+. |.--.+.....-+++-......+...|.--|...-+ +..+|..+.|++-+|+.
T Consensus 119 KEd~d-~q~~~~~-----~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg-~~~~D~Dr~sr~~~t~t 183 (608)
T KOG4212|consen 119 KEDHD-EQRDQYG-----RIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRG-FSRRDDDRLSRRNNTNT 183 (608)
T ss_pred eccCc-hhhhhhh-----heeeccCcccccCcceecccccccccCCCCccccCC-CCcccccccccccCccc
Confidence 86444 3333222 111224555666677777888888999888887777 44899999999888764
No 110
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=1.9e-07 Score=94.47 Aligned_cols=76 Identities=28% Similarity=0.414 Sum_probs=68.1
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh---CCeeCCeEEE
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ---GLFYAGVELH 185 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~---~~~~~G~~l~ 185 (498)
++...+||||++|-..+++.+|+++|-+||+|.+|++... +|+|||+|.+.++|+.|... ...++|..|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 5667899999999889999999999999999999998542 47999999999999999996 5779999999
Q ss_pred Eeecch
Q 043731 186 LKPKKE 191 (498)
Q Consensus 186 v~~k~d 191 (498)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999865
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.48 E-value=1e-07 Score=97.42 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=70.7
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
..+.|||++||.++++++++++|.+||.|..+-++.+.. +.+.+||+||+|.+++++.+++.. .+.|+|+.+.|..+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~-~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKT-TSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccc-ccccccceeeEeccccccceecccceeeecCceeeEeec
Confidence 456899999999999999999999999999999998876 678999999999999999999997 78999999998665
No 112
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=5.6e-07 Score=79.64 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=70.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
.+++|||+||++-+++|+|-++|+++|+|+.|.+.-++ ++.||.|-..++|+.|+..++ |..|+.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCccccccee
Confidence 35689999999999999999999999999999765332 336999999999999999884 9999999999
Q ss_pred EEEcCChhHHHHHH
Q 043731 393 LEPVTGEAEKEYWS 406 (498)
Q Consensus 393 v~~~~g~~E~e~~~ 406 (498)
+..=-|=.|=-.|-
T Consensus 110 ~D~D~GF~eGRQyG 123 (153)
T KOG0121|consen 110 IDWDAGFVEGRQYG 123 (153)
T ss_pred eeccccchhhhhhc
Confidence 99877766654443
No 113
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.6e-07 Score=96.69 Aligned_cols=60 Identities=28% Similarity=0.486 Sum_probs=50.2
Q ss_pred HHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhh
Q 043731 9 AQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRK 82 (498)
Q Consensus 9 ~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~ 82 (498)
...+.+|||||||-.||..|.|||+++. .+||||+++|..|.|...+.+ +..++..||+.
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~--kaGf~plsfi~kf~Rn~Sf~g------------d~nLilaa~ke 330 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFK--KAGFIPLSFIGKFYRNLSFGG------------DKNLILAAMKE 330 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhh--hcccccHhhhhhhhhccccCC------------chhhhHHHHHH
Confidence 4567889999999999999999999998 579999999999999777753 34556666654
No 114
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=1.1e-06 Score=87.47 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=70.3
Q ss_pred CcceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 318 GKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 318 ~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
.+..++||+-|+.++++..|+..|+.||.|+.|.+.++ .+.|||.|+++-+...|...+ . |++|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a---d--G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA---D--GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc---c--CceecCcEE
Confidence 35678999999999999999999999999999998765 455899999999999998775 3 999999999
Q ss_pred EEEEcCChhHHHHHH
Q 043731 392 VLEPVTGEAEKEYWS 406 (498)
Q Consensus 392 ~v~~~~g~~E~e~~~ 406 (498)
.|.+=-|..= ..|.
T Consensus 174 ~VDvERgRTv-kgW~ 187 (335)
T KOG0113|consen 174 LVDVERGRTV-KGWL 187 (335)
T ss_pred EEEecccccc-cccc
Confidence 9998544332 2775
No 115
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.5e-06 Score=84.54 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=62.7
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++=|-||++++++++|.++|.+||.|..|.+.+++ |+|||.|.+.++|++|++.|+ |+=+++-+|.|+-
T Consensus 191 tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LILrvEw 265 (270)
T KOG0122|consen 191 TVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLILRVEW 265 (270)
T ss_pred eeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEEEEEEe
Confidence 56778999999999999999999999999988754 458999999999999999984 8888888888886
Q ss_pred cC
Q 043731 396 VT 397 (498)
Q Consensus 396 ~~ 397 (498)
+.
T Consensus 266 sk 267 (270)
T KOG0122|consen 266 SK 267 (270)
T ss_pred cC
Confidence 54
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=1.4e-06 Score=88.44 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=65.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++||++|.+.+++.+|++.|-+||+|+++.+..+++.|||+|.+.++|++|.++.- | .+.|+|+.|.+.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~--n--~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSF--N--KLVINGFRLKIK 298 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhc--c--eeeecceEEEEE
Confidence 478999999999999999999999999999999999999999999999999987752 4 999999999987
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.28 E-value=1.3e-06 Score=96.04 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=67.3
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
.+.+|||||++||..+++.+|..+|+.||.|.+|.|.- ++|||||......+|.+||.+ ...+.++.|+|.
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 46789999999999999999999999999999998854 469999999999999999996 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
|..
T Consensus 491 Wa~ 493 (894)
T KOG0132|consen 491 WAV 493 (894)
T ss_pred eec
Confidence 853
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=98.26 E-value=2.3e-06 Score=68.41 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=45.4
Q ss_pred HHHHHHHhc----cCCceEEEE---eec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 334 REDLKSVFH----KFGTVKFID---FKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 334 ~EdLke~F~----~fG~V~~V~---~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
+++|++.|+ +||.|..|. +.+ .++.|||+|.++++|.+|+..|+ |..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 468888888 999998874 222 25569999999999999999884 99999999876
No 119
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.26 E-value=1.3e-06 Score=92.60 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=66.4
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecch
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKKE 191 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~d 191 (498)
..+|||+|||.+++..+|+++|++||.|...+|.....+.+.+ +||||+|.+.++++.|+.. ...++|++|.|.-++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~-~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNP-CFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcC-ceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4569999999999999999999999999998876543222334 9999999999999999997 6779999999877654
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.7e-05 Score=84.24 Aligned_cols=167 Identities=15% Similarity=0.138 Sum_probs=108.6
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEccc-ccCC-CCcccc---eEEEEeCCHHHHHHHHHhCCeeCCeE
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPR-HVAD-KRLFCG---TALIEFSTEEDAEKVLKQGLFYAGVE 183 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r-~~~~-~~~~kG---~aFVeF~s~e~A~kAl~~~~~~~G~~ 183 (498)
...-.|.|||++||++++++.|...|..||.+.. .-++ .... .-.++| |+|.-|+++.++...|..-.. .+.+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 3456789999999999999999999999998653 2332 1111 123566 999999999999988875222 3333
Q ss_pred EEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCC
Q 043731 184 LHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDG 263 (498)
Q Consensus 184 l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~ 263 (498)
+-+.....- -+...|.+ ..|-- . |
T Consensus 333 ~yf~vss~~--------------------------------~k~k~VQI--rPW~l-----a-------D---------- 356 (520)
T KOG0129|consen 333 YYFKVSSPT--------------------------------IKDKEVQI--RPWVL-----A-------D---------- 356 (520)
T ss_pred eEEEEecCc--------------------------------ccccceeE--EeeEe-----c-------c----------
Confidence 332221100 00000111 11111 0 0
Q ss_pred CCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhc-
Q 043731 264 EPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFH- 342 (498)
Q Consensus 264 ~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~- 342 (498)
... .. ..........+||||.||--++-++|..+|.
T Consensus 357 ---------------------------s~f-----v~-----------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 357 ---------------------------SDF-----VL-----------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred ---------------------------chh-----hh-----------ccCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 000 00 0001122345899999999999999999999
Q ss_pred cCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHH
Q 043731 343 KFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 343 ~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l 376 (498)
-||.|.||-|-.+ .|.|=|.|.+..+=-+||++-
T Consensus 394 lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 394 LFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred hcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 5999999988776 456899999999999998874
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.25 E-value=1.9e-06 Score=82.04 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=66.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccC-CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQH-VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~-G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
...--+||..+|..+-+.++..+|.++ |.|..+|+-|++. ||.++|||||+|++++.|.=|.+. +..+.|+-|.+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkr-TGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKR-TGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccc-cCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 345569999999999999999999999 7888899988876 789999999999999999988884 677888877654
Q ss_pred e
Q 043731 188 P 188 (498)
Q Consensus 188 ~ 188 (498)
.
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 3
No 122
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.9e-07 Score=97.63 Aligned_cols=63 Identities=29% Similarity=0.500 Sum_probs=55.8
Q ss_pred HHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCccee
Q 043731 9 AQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSSLKL 88 (498)
Q Consensus 9 ~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~leV 88 (498)
.+-|.+|||||||.+||.+|.||++ +||+|.+|++|+||..++. |+++|.+||+.+-++++
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~------------d~nli~~alr~s~ive~ 361 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSS------------DINLILAALRNSLIVEE 361 (448)
T ss_pred ccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhccc------------CHHHHHHHHhhhhhhhc
Confidence 4567899999999999999999976 6788999999999999973 89999999999988876
Q ss_pred ec
Q 043731 89 SE 90 (498)
Q Consensus 89 se 90 (498)
..
T Consensus 362 ~~ 363 (448)
T KOG2590|consen 362 TG 363 (448)
T ss_pred cc
Confidence 53
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.22 E-value=1.5e-06 Score=85.63 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=74.5
Q ss_pred hhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEE
Q 043731 108 KEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHL 186 (498)
Q Consensus 108 ~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v 186 (498)
...++.+++||+|+.+.+|.++++..|+.||.|..|.|+.+.. .++++||+||+|.+.+.+.+|+.. +..+.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~-~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF-RGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeecccc-CCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 3568899999999999999999999999999999999998876 566999999999999999999994 88899999998
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8874
No 124
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.20 E-value=9.6e-06 Score=83.83 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=63.8
Q ss_pred cceEEeccCC-CCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLE-YDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp-~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
...|.|.||. ..+|.+-|..+|+-||.|..|.|..++. -.|.|.+.+...|+-|+.. +..+.|+.|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC------cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 3568899995 5689999999999999999999988743 4699999999999999995 89999999999887
Q ss_pred ch
Q 043731 190 KE 191 (498)
Q Consensus 190 ~d 191 (498)
+.
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 53
No 125
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.8e-06 Score=80.74 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=88.1
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeec---CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI---GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~---g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+||+|||.++-+.+|.++|-+||.|..|++.. ....|||+|+++-+|+-||..- + |..++|..|.|+..-|
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR---d--GYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR---D--GYDYDGCRLRVEFPRG 82 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcc---c--ccccCcceEEEEeccC
Confidence 579999999999999999999999999999863 2557999999999999998763 3 9999999999999865
Q ss_pred hhHHHHHH--------------HHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeecc
Q 043731 399 EAEKEYWS--------------LLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHE 453 (498)
Q Consensus 399 ~~E~e~~~--------------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (498)
-----+-. ..+...-++-..|.-+.-|-.+-.=..|+...-+-|.+-=+.| ++|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv-~rD 150 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADV-QRD 150 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeee-ecc
Confidence 21000000 0011111222333334455555555566666666677766666 666
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2e-07 Score=103.30 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=110.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
.+..++||+||+..+...+|...|..+|.+..|++.... ++++++|.|||+|..++++.+|+.- ...+-|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~-n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK-NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh-hccccccceeeEeecCCchhhhhhhhhhhhhh--------
Confidence 344679999999999999999999999999999987444 3678999999999999999999962 100000
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
-..+|+.|+|+..|.+.|+.+|+++|.++.
T Consensus 736 --------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~ 765 (881)
T KOG0128|consen 736 --------------------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTS 765 (881)
T ss_pred --------------------------------------------------hhhhheeCCCCCCchHHHHhhccccCCccc
Confidence 002477899999999999999999999988
Q ss_pred EEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 350 IDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 350 V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
+.+... .+-+||.|.++.+|.++++... ++.++...+.+.+
T Consensus 766 ~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d-----~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 766 LRLVTVRAGKPKGKARVDYNTEADASRKVASVD-----VAGKRENNGEVQV 811 (881)
T ss_pred cchhhhhccccccceeccCCCcchhhhhcccch-----hhhhhhcCccccc
Confidence 765432 3458999999999999988753 5555555554444
No 127
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.08 E-value=7.1e-06 Score=87.47 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=69.4
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+||||+|++.++|+|.++|++.|.|..+.+.-+ +|.||+.|.++++|.+|++.| | |..+.|+.+.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~l---N--g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNL---N--GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhc---C--CcccCCceEEee
Confidence 46899999999999999999999999988777643 345899999999999999998 4 999999999999
Q ss_pred EcCChhHHH--HHH
Q 043731 395 PVTGEAEKE--YWS 406 (498)
Q Consensus 395 ~~~g~~E~e--~~~ 406 (498)
....+..++ +|.
T Consensus 94 ~~~~~~~~~~~~~~ 107 (435)
T KOG0108|consen 94 YASNRKNAERSLAS 107 (435)
T ss_pred cccccchhHHHHhh
Confidence 996655444 554
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=4e-05 Score=78.75 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=55.1
Q ss_pred eccCCCccccHHHHHHHhccCC-ceEE--EEee---cC--CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 324 TYKDNMDVVMREDLKSVFHKFG-TVKF--IDFK---IG--AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 324 fv~nL~~~vt~EdLke~F~~fG-~V~~--V~~~---~g--~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
-.++||+..+.|+|-..|..|. .|.+ |.+. -| .|.|||+|.+.|.|..|...-. ...++++-+.|-.
T Consensus 284 RLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~h-----k~~mk~RYiEvfp 358 (508)
T KOG1365|consen 284 RLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCH-----KKLMKSRYIEVFP 358 (508)
T ss_pred EecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHH-----HhhcccceEEEee
Confidence 4589999999999999999997 3555 4433 22 3448999999999988866532 3445677777666
Q ss_pred cCChhHHHHHHH
Q 043731 396 VTGEAEKEYWSL 407 (498)
Q Consensus 396 ~~g~~E~e~~~~ 407 (498)
..+++=.+-+..
T Consensus 359 ~S~eeln~vL~~ 370 (508)
T KOG1365|consen 359 CSVEELNEVLSG 370 (508)
T ss_pred ccHHHHHHHHhc
Confidence 666444444443
No 129
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.97 E-value=9.5e-05 Score=78.33 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=61.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceee-EEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNS-VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~-Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
..-.|.+++||+.+|+++|.+||+-.-.|.. |.++.+.. +++.|-|||.|++.+.|++||.. ...++-+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r--gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR--GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC--CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 4567999999999999999999998866666 65666654 45899999999999999999986 44566666666544
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1e-05 Score=82.20 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=70.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
+...-|||.-|.+-+|.++|+-+|+.||+|.++.++|+.. ++.+.-||||+|++.+++++|.=. ...++++.|+|..
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~k-tgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRK-TGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccc-ccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3457799999999999999999999999999999999986 788899999999999999999863 6779999999876
Q ss_pred c
Q 043731 189 K 189 (498)
Q Consensus 189 k 189 (498)
+
T Consensus 316 S 316 (479)
T KOG0415|consen 316 S 316 (479)
T ss_pred h
Confidence 5
No 131
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=7.6e-06 Score=80.50 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=71.3
Q ss_pred hhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEE
Q 043731 107 MKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVEL 184 (498)
Q Consensus 107 ~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l 184 (498)
.++..+.+.|||--||.+....+|.+.|-.||.|.+..+--|+. +..+|.|+||.|+++.+|+.|+.. +..++-+.|
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA-TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA-TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc-cccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 45677889999999999999999999999999999988877776 678999999999999999999985 555666666
Q ss_pred EEeecc
Q 043731 185 HLKPKK 190 (498)
Q Consensus 185 ~v~~k~ 190 (498)
+|..|+
T Consensus 358 KVQLKR 363 (371)
T KOG0146|consen 358 KVQLKR 363 (371)
T ss_pred hhhhcC
Confidence 666654
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.88 E-value=2.3e-05 Score=86.56 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=71.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChh
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEA 400 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~ 400 (498)
.++||+.|+..++++||+.+|+.||+|.+|.+...+++|||......+|.+|+.+|. ...+.++.|++.-+.|.-
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLS-----NVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHh-----cccccceeeEEeeeccCC
Confidence 379999999999999999999999999999999999999999999999999999995 788899988777666643
Q ss_pred HHH----HHH
Q 043731 401 EKE----YWS 406 (498)
Q Consensus 401 E~e----~~~ 406 (498)
=+. ||.
T Consensus 497 ~kse~k~~wD 506 (894)
T KOG0132|consen 497 PKSEYKDYWD 506 (894)
T ss_pred cchhhhhhhh
Confidence 333 665
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.83 E-value=2.6e-05 Score=83.32 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=66.2
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..|.+||.+|...+-..+|+.+|++||+|....++.+....+ -++|+||++.+.++|.++|.+ .+.++|+.|.|...
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPG-aRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG-ARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCC-cceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 457899999999999999999999999999988876643222 468999999999999999996 67899999998654
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.82 E-value=4.2e-05 Score=75.62 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=67.1
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..+|+|.|||+.++.++|+++|.+||.+..+.|..+.. +.+.|+|-|.|...++|..|++. +..++|++|.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~--G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA--GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC--CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 36799999999999999999999999999998887764 67899999999999999999995 78899999887654
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.79 E-value=1.8e-05 Score=88.59 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=116.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeec
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPK 189 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k 189 (498)
.+..+|||++||+..+++.+|+..|..+|.|..|.|-+... +.-.-++||.|.+.+.+-+|... ..|..|.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e---~s~~~I~---- 439 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFE---ESGPLIG---- 439 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchh---hcCCccc----
Confidence 56789999999999999999999999999999999876643 22346889999988888877753 1111111
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
.|... . .- |
T Consensus 440 ------------------------------------~g~~r-~-----gl-------G---------------------- 448 (975)
T KOG0112|consen 440 ------------------------------------NGTHR-I-----GL-------G---------------------- 448 (975)
T ss_pred ------------------------------------cCccc-c-----cc-------c----------------------
Confidence 00000 0 00 0
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
....+.+.-+++++|+..+....|...|..||.|.-
T Consensus 449 --------------------------------------------~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~ 484 (975)
T KOG0112|consen 449 --------------------------------------------QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI 484 (975)
T ss_pred --------------------------------------------ccccccceeeccCCCCCCChHHHHHHHhhccCccee
Confidence 001112234578999999999999999999999999
Q ss_pred EEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEc
Q 043731 350 IDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPV 396 (498)
Q Consensus 350 V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~ 396 (498)
|+|..|.-.+||.++++..|+.|+..+. |.-|+| +.+.|..+
T Consensus 485 Idy~hgq~yayi~yes~~~aq~a~~~~r-----gap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 485 IDYRHGQPYAYIQYESPPAAQAATHDMR-----GAPLGGPPRRLRVDLA 528 (975)
T ss_pred eecccCCcceeeecccCccchhhHHHHh-----cCcCCCCCcccccccc
Confidence 9999999999999999999999998875 555554 34444443
No 136
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.79 E-value=2.6e-05 Score=69.75 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=62.0
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCce------EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES------GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
..-.+||-++.+.+++|++.+.|..||+|+.+.+.-++-+ |.|.|++.+.|++|+.++ | |..|-|..|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~---N--g~~ll~q~v~ 145 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDAL---N--GAELLGQNVS 145 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhc---c--chhhhCCcee
Confidence 4457999999999999999999999999999988766554 568999999999999998 4 7778888776
Q ss_pred EEEc
Q 043731 393 LEPV 396 (498)
Q Consensus 393 v~~~ 396 (498)
|.-.
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 6543
No 137
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.6e-05 Score=79.34 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=68.4
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCce------EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES------GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+.+.+||=-|.+.+++|||.-+|+.||.|..+.+.++..+ |||+|++.++.++|.=+|. .+.|+++.|-
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrRIH 312 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRRIH 312 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccceEE
Confidence 3446899999999999999999999999999999998776 7999999999999987763 8999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|...+.=+
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 99877643
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.76 E-value=2.5e-05 Score=82.92 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=58.9
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeec----CC--ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI----GA--ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~----g~--~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+||+|||.+++..+|++.|.+||.|+...|.. +. -+|||.|++.++++.|+.+. .+.|+++.+.|+
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKLNVE 362 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeEEEE
Confidence 389999999999999999999999998766653 11 45999999999999999873 899999999998
No 139
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=4.9e-06 Score=77.77 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=63.2
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCCce------EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES------GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.-+|++|||+..|+-||--+|++||+|.-|.+.|+..+ +|+.|++.-+---||.-| | |+.|.|+.|.|.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~---N--Giki~gRtirVD 110 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNL---N--GIKILGRTIRVD 110 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEecc---C--CceecceeEEee
Confidence 35899999999999999999999999999999886544 799999988888887765 3 999999999998
Q ss_pred EcC
Q 043731 395 PVT 397 (498)
Q Consensus 395 ~~~ 397 (498)
-+.
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 764
No 140
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.8e-05 Score=74.68 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++||++|-+.+++--|...|=+||.|+-|.++. .+++|||+|+..|+|..|+.-++ +..|-|+.|.|..
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~GrtirVN~ 86 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIRVNL 86 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEEEee
Confidence 689999999999999999999999999888764 56779999999999999988763 7789999999988
Q ss_pred cCC
Q 043731 396 VTG 398 (498)
Q Consensus 396 ~~g 398 (498)
+..
T Consensus 87 AkP 89 (298)
T KOG0111|consen 87 AKP 89 (298)
T ss_pred cCC
Confidence 754
No 141
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.66 E-value=0.00062 Score=70.06 Aligned_cols=143 Identities=21% Similarity=0.198 Sum_probs=100.1
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEee
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLKP 188 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~~ 188 (498)
+--|.|++|-..+++.+|.+..+.||.|..|.++.. +-.|.|+|++.+.|+.++.- ...++|+.-.+..
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 446999999999999999999999999999886543 23489999999999999972 2334444322111
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
+. +. . +. ..|
T Consensus 104 St---------------------sq-------------------~---i~------R~g--------------------- 113 (494)
T KOG1456|consen 104 ST---------------------SQ-------------------C---IE------RPG--------------------- 113 (494)
T ss_pred ch---------------------hh-------------------h---hc------cCC---------------------
Confidence 10 00 0 00 000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccC--cceeeeccCCCccccHHHHHHHhccCCc
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEG--KTSIDTYKDNMDVVMREDLKSVFHKFGT 346 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~--~~~~vfv~nL~~~vt~EdLke~F~~fG~ 346 (498)
.+..+ +-.++-+-|.-+.+|-+-|..++...|.
T Consensus 114 ---------------------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk 148 (494)
T KOG1456|consen 114 ---------------------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGK 148 (494)
T ss_pred ---------------------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc
Confidence 00000 1122334566678999999999999999
Q ss_pred eEEEEeecCC-ceEEEEeCCHHHHHHHHHHHh
Q 043731 347 VKFIDFKIGA-ESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 347 V~~V~~~~g~-~~GfV~F~~~e~A~kAv~~l~ 377 (498)
|.+|.+.+-. -.|.|+|++.+.|++|.++|+
T Consensus 149 VlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 149 VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred eEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 9998776544 359999999999999999985
No 142
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=7.7e-05 Score=80.39 Aligned_cols=187 Identities=15% Similarity=0.228 Sum_probs=127.3
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccC-----------C-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-C
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQH-----------V-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-G 176 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~-----------G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~ 176 (498)
..+++.+||+++|..++++..-.+|..- | .|..+.+. .-++|||++|.+.++|..|+.. +
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-------~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-------LEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-------ccccceeEEecCCCchhhhhcccc
Confidence 5678999999999999999999999864 2 24445442 2468999999999999999986 7
Q ss_pred CeeCCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCc
Q 043731 177 LFYAGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSE 256 (498)
Q Consensus 177 ~~~~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~ 256 (498)
..|.|.++.+..-.+|.. ..++++.+.- ..+...
T Consensus 245 ~~f~g~~~~~~r~~d~~~------------------------------~p~~~~~~~~-------------~~~~~~--- 278 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQP------------------------------VPGITLSPSQ-------------LGKVGL--- 278 (500)
T ss_pred hhhCCCCceecccccccC------------------------------Cccchhhhcc-------------ccccCC---
Confidence 789999887543322221 2222222210 000000
Q ss_pred CCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHH
Q 043731 257 NACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMRED 336 (498)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~Ed 336 (498)
....+ ....-+..+|+++||...++..
T Consensus 279 ----~~~~t-------------------------------------------------~~~~~~~ki~v~~lp~~l~~~q 305 (500)
T KOG0120|consen 279 ----LPAST-------------------------------------------------DVPDSPNKIFVGGLPLYLTEDQ 305 (500)
T ss_pred ----ccccc-------------------------------------------------CcccccchhhhccCcCccCHHH
Confidence 00000 0000122468999999999999
Q ss_pred HHHHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc-CChhHHHHHHH
Q 043731 337 LKSVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV-TGEAEKEYWSL 407 (498)
Q Consensus 337 Lke~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~-~g~~E~e~~~~ 407 (498)
++|+...||.+....+.. +.+.+|-+|.++.-...|++.| | |..++++.+.|..+ .|.-=..-|..
T Consensus 306 ~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agL---n--Gm~lgd~~lvvq~A~~g~~~~~~~~~ 378 (500)
T KOG0120|consen 306 VKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGL---N--GMQLGDKKLVVQRAIVGASNANVNFN 378 (500)
T ss_pred HHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhccc---c--hhhhcCceeEeehhhccchhccccCC
Confidence 999999999876655443 3456899999999999999988 4 99999999988877 55333333333
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.00014 Score=71.90 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=68.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeec-----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI-----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~-----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
....+.|.|||..|+.+||+++|..||.++.|-+.- ..++|-|.|...++|..|+..++ |+.++|+.+.+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~ 156 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKI 156 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeee
Confidence 345788999999999999999999999888877653 34679999999999999999984 79999999999
Q ss_pred EEcCChhHHH
Q 043731 394 EPVTGEAEKE 403 (498)
Q Consensus 394 ~~~~g~~E~e 403 (498)
.++..-....
T Consensus 157 ~~i~~~~~~~ 166 (243)
T KOG0533|consen 157 EIISSPSQSK 166 (243)
T ss_pred EEecCccccc
Confidence 9887755443
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.54 E-value=4.5e-05 Score=73.36 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=64.3
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
.|||||.||-..++++-|.++|-+.|+|..|.||..+. +..+ ||||+|.++-++.-|+.. +..+.+.++.+.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d--~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD--QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc--CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 59999999999999999999999999999999998865 4456 999999999999999984 67777777766543
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=6.1e-05 Score=80.78 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=60.5
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
....++|+|-|||.+++.++|+.+|+.||+|..|++-+. ..|.+||+|-+.-+|+.|++. ...+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~------~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN------KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc------cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 567899999999999999999999999999999887443 458999999999999999995 5666666554
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.49 E-value=0.00033 Score=66.94 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=69.0
Q ss_pred eeeccCCCccccHHHHHHHhccC-CceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKF-GTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~f-G~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++++.+|..+.+.++-.+|.+| |.|+.+++.|.. +.|||+|++++-|+-|-+.|+ +..|-++-+.+.
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~lL~c~ 125 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHLLECH 125 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhheeeeE
Confidence 56889999999999999999998 789999997643 448999999999999999984 889999999999
Q ss_pred EcCC--hhHHHHHH
Q 043731 395 PVTG--EAEKEYWS 406 (498)
Q Consensus 395 ~~~g--~~E~e~~~ 406 (498)
+.-. .-|+.+|+
T Consensus 126 vmppe~~v~~~~~k 139 (214)
T KOG4208|consen 126 VMPPEQKVEKNLKK 139 (214)
T ss_pred EeCchhhhhhhhhh
Confidence 9954 46777776
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.47 E-value=0.00015 Score=73.67 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=119.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CC-eeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GL-FYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~-~~~G~~l~v~~k 189 (498)
...+.|++++.+.+...++..++..+|.+...++-.... ...++|++++.|...+.+..||.. .. ...++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~-~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~--- 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED-SLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK--- 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc-ccccccceeeccccHHHHHHHHHhhhccccccccccC---
Confidence 467899999999999898999999999888777655332 356899999999999999999985 22 222222210
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
+ ..+..++.... ..
T Consensus 163 --------------------------d-----l~~~~~~~~~n----~~------------------------------- 176 (285)
T KOG4210|consen 163 --------------------------D-----LNTRRGLRPKN----KL------------------------------- 176 (285)
T ss_pred --------------------------c-----ccccccccccc----hh-------------------------------
Confidence 0 00111100000 00
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
......+.....+|+||++.+++++|+..|..+|.|..
T Consensus 177 ------------------------------------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~ 214 (285)
T KOG4210|consen 177 ------------------------------------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITS 214 (285)
T ss_pred ------------------------------------------cccccCccccceeecccccccchHHHhhhccCcCccee
Confidence 00000001112348999999999999999999999999
Q ss_pred EEeecCCce------EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHH
Q 043731 350 IDFKIGAES------GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWS 406 (498)
Q Consensus 350 V~~~~g~~~------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~ 406 (498)
|+++..+.+ |||+|.+...+.+|+.. +...+.++.+.++.-.......-|.
T Consensus 215 ~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (285)
T KOG4210|consen 215 VRLPTDEESGDSKGFAYVDFSAGNSKKLALND------QTRSIGGRPLRLEEDEPRPKSDGGL 271 (285)
T ss_pred eccCCCCCccchhhhhhhhhhhchhHHHHhhc------ccCcccCcccccccCCCCccccccc
Confidence 998865544 79999999999998664 2667778777776655544444443
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.46 E-value=0.00031 Score=60.13 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=54.0
Q ss_pred ceEEeccCCCCCcHHHHHHHhccC--CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQH--VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~--G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
.||=++|+|...|.+.|.+++... |...-+-||-|.. ++...|||||.|.+++.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~-~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK-NKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc-CCCceEEEEEEcCCHHHHHHHHHH
Confidence 689999999999999999888763 7777888998876 677899999999999999999985
No 149
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.31 E-value=0.00041 Score=67.15 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred eeeccCCCccccHHHHHH----HhccCCceEEEEee---cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKS----VFHKFGTVKFIDFK---IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke----~F~~fG~V~~V~~~---~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
++||.||++-+..++|+. +|++||.|.-|... +-+|-|||.|.+.++|..|+.+|+ |.-+=|+.+.+-
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~-----gfpFygK~mriq 85 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQ-----GFPFYGKPMRIQ 85 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhc-----CCcccCchhhee
Confidence 789999999999999999 99999998777654 345679999999999999999985 888888888777
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
.+-.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 6643
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.19 E-value=0.00055 Score=75.30 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=68.2
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCC--CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVAD--KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~--~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
+.....+||+||++.++++.|...|+.||+|.+|+|+-.... .++...|+||-|-+..+|++|++. +..+.+.++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 455678999999999999999999999999999998755432 345678999999999999999995 7888888888
Q ss_pred Eeec
Q 043731 186 LKPK 189 (498)
Q Consensus 186 v~~k 189 (498)
+-|.
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 7775
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.18 E-value=0.00071 Score=51.45 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=43.5
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHH
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVL 173 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl 173 (498)
+.|-|.|+|.+.. +.+..+|.+||+|..+.++. ...+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-------CCcEEEEEECCHHHHHhhC
Confidence 6789999997765 55667999999999998862 1357999999999999996
No 152
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.00044 Score=67.20 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=94.4
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh-h
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE-A 400 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~-~ 400 (498)
.+||++||+.+.+.+|..+|.+||.+..|++..+ .|||.|+++-+|.-|+-.++ +..|.|..+.++.+.+. -
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g--f~fv~fed~rda~Dav~~l~-----~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG--FGFVEFEDPRDADDAVHDLD-----GKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc--cceeccCchhhhhcccchhc-----Cceecceeeeeeccccccc
Confidence 3699999999999999999999999999887755 66999999999999998874 88888888888887741 1
Q ss_pred HH--------HHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 401 EK--------EYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 401 E~--------e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
++ .-|.....-. -.-..++.+.++.....-..+..+|...|+++. .+. +.+++||+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p-~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~-~~~-------~~~~~~v~ 139 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPP-SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTY-VDA-------RRNFAFVE 139 (216)
T ss_pred ccCCCCCCCccchhhccCCc-ccccceeeeccchhhhhHHHHhhhhcccCCCch-hhh-------hcccccee
Confidence 11 0122111110 112456677788888888899999999999943 342 45566664
No 153
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.12 E-value=0.0071 Score=62.49 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred cceEEeccCCCC-CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 113 VRTIAATPLEYD-VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~-~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..-+-|-+|... ++-+.|-.+|..||.|..|..++.+. |.|.|++-++.++++|+.. ...+-|.+|.|..+
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~------gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP------GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc------ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 345677788764 67788999999999999999988643 8899999999999999984 66667778887765
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
+
T Consensus 361 k 361 (494)
T KOG1456|consen 361 K 361 (494)
T ss_pred c
Confidence 3
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.04 E-value=0.0026 Score=55.31 Aligned_cols=81 Identities=26% Similarity=0.329 Sum_probs=48.7
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-------CCeeCCeEEEEe
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-------GLFYAGVELHLK 187 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-------~~~~~G~~l~v~ 187 (498)
.|++.|++..++.++|++.|++||.|..|-+.+. ...|||-|.+++.|++|+.. ...+.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5889999999999999999999999999987653 24689999999999999984 345677666655
Q ss_pred ec-----chhHHHHHHhHHH
Q 043731 188 PK-----KEFEAERAKETEE 202 (498)
Q Consensus 188 ~k-----~d~~~~k~~~~~~ 202 (498)
.- ..|+.+-...+..
T Consensus 76 vLeGeeE~~Yw~ki~e~~~~ 95 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDRQK 95 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHH
Confidence 42 3466554444443
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.98 E-value=0.00062 Score=65.67 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=91.1
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCce----EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES----GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~----GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
++||+|+...+++|-|.++|-+-|.|..|.|+.++++ |||.|+++-...-|++.+ | |..+-+.++.+.+-.
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~---n--g~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLE---N--GDDLEEDEEQRTLRC 85 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhc---c--cchhccchhhccccc
Confidence 6899999999999999999999999999999877654 999999999999998876 4 777777766665554
Q ss_pred ChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 398 GEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 398 g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
|.. -.-|+....-+-+-+.|+.-|-|..+.+ -++..|.+.-+|||-
T Consensus 86 G~s---------------------hapld~r~~~ei~~~v~s~a~p~~~~R~-~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 86 GNS---------------------HAPLDERVTEEILYEVFSQAGPIEGVRI-PTDNDGRNRNFGFVT 131 (267)
T ss_pred CCC---------------------cchhhhhcchhhheeeecccCCCCCccc-cccccCCccCccchh
Confidence 432 2235555556667777888888888877 555568888888874
No 156
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.93 E-value=0.0015 Score=64.35 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=65.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
-+.-.||.+.|--+++.+-|-..|.+|-.....++.|++. +++++||+||.|.++.++..|+.+ +..++.++|..
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR-TgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR-TGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccccc-ccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 4557899999999999999999999999888888888886 788999999999999999999996 55556666653
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.92 E-value=0.0033 Score=52.20 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=44.9
Q ss_pred ceEEeccCCCCCcHHH----HHHHhccCC-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 114 RTIAATPLEYDVKRED----VEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~----L~~~F~~~G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
..|||.|||.+.+... |++++..|| +|..|. .|.|+|-|.+++.|.+|.+. +-..-|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4699999999887655 567888895 777772 37899999999999999995 66788899998
Q ss_pred eec
Q 043731 187 KPK 189 (498)
Q Consensus 187 ~~k 189 (498)
...
T Consensus 72 ~~~ 74 (90)
T PF11608_consen 72 SFS 74 (90)
T ss_dssp ESS
T ss_pred EEc
Confidence 776
No 158
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.84 E-value=0.011 Score=61.35 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=51.4
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEE-cccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEE
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVR-LPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHL 186 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vr-i~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v 186 (498)
..-|..++||+..+..+|-.||.---....-+ |+... .++-.|.+.|.|.++|.-+-|++. .....++.|.|
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~--qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryiev 133 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNA--QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEV 133 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehh--hhccccceEEEecCchhhhhhhHhhhhhccCCceee
Confidence 34567889999999999999998653333222 33332 244579999999999999999996 45556666664
No 159
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.81 E-value=0.002 Score=69.35 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEee---cCCce---EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK---IGAES---GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~---~g~~~---GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++.|.+|+..+--.+||.||++||.|.-..+. +.++. |||.+.+.++|-+||+.|. -..|-|+.|.|+
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGrmISVE 480 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGRMISVE 480 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcceeeeee
Confidence 368999999998889999999999988544333 44443 9999999999999999986 567999999999
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
.+..
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8754
No 160
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.73 E-value=0.0025 Score=70.30 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=61.4
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEee---------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK---------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~---------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~ 389 (498)
..+++||+||+..++++.|-..|+.||+|..|.++ +++.+|||-|-+..+|++|+..|+ |+.+-+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv~~~ 247 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIVMEY 247 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceeeeee
Confidence 45689999999999999999999999999998875 355679999999999999999884 8888877
Q ss_pred EEEEE
Q 043731 390 IAVLE 394 (498)
Q Consensus 390 ~~~v~ 394 (498)
++.+.
T Consensus 248 e~K~g 252 (877)
T KOG0151|consen 248 EMKLG 252 (877)
T ss_pred eeeec
Confidence 76554
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.67 E-value=0.001 Score=67.70 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=64.0
Q ss_pred cceEE-eccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEe
Q 043731 113 VRTIA-ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLK 187 (498)
Q Consensus 113 ~rtV~-V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~ 187 (498)
..++| |++|+++++.++|..+|..+|.|..++++.+.. ++..+|+|||.|.+...+..++.. ...+.++++.+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~-s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE-SGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLE 259 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCC-ccchhhhhhhhhhhchhHHHHhhcccCcccCcccccc
Confidence 34566 999999999999999999999999999998876 678999999999999999999983 556677776643
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.63 E-value=0.0037 Score=63.66 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=59.0
Q ss_pred cccceEEeccCCCCCcHHHH------HHHhccCCceeeEEcccccCCCCcccc--eEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLEYDVKREDV------EAFFSQHVKVNSVRLPRHVADKRLFCG--TALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L------~~~F~~~G~V~~Vri~r~~~~~~~~kG--~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
++..-|||-+||+.+..+++ .++|++||+|..|.+-+.......-.| -+||+|.+.|+|.+|+.. +..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34556999999998877662 389999999999988654321111122 359999999999999997 78899
Q ss_pred CeEEEEee
Q 043731 181 GVELHLKP 188 (498)
Q Consensus 181 G~~l~v~~ 188 (498)
|+-|+..+
T Consensus 192 Gr~lkatY 199 (480)
T COG5175 192 GRVLKATY 199 (480)
T ss_pred CceEeeec
Confidence 99988654
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.0018 Score=72.71 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=47.1
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEee------cCCceEEEEeCCHHHHHHHHHHH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK------IGAESGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~------~g~~~GfV~F~~~e~A~kAv~~l 376 (498)
++|+.||+..++.++|+..|..+|.+..|.+. +-+|.|||.|..++.|.+||+..
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 57999999999999999999999987665543 23567999999999999999875
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.50 E-value=0.0023 Score=65.81 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=64.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee--------EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS--------VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~--------Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
...-||||.++|..++.++|.++|.+||.|.. |.|-+++. |..+||-|.|+|.++..|+.|+.. ...|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dke-T~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKE-TGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccccc-ccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45679999999999999999999999998862 44556663 788999999999999999999985 67788
Q ss_pred CeEEEEee
Q 043731 181 GVELHLKP 188 (498)
Q Consensus 181 G~~l~v~~ 188 (498)
|..|.|.+
T Consensus 143 gn~ikvs~ 150 (351)
T KOG1995|consen 143 GNTIKVSL 150 (351)
T ss_pred CCCchhhh
Confidence 87776543
No 165
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.21 E-value=0.01 Score=60.87 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=89.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEE--------EEeecCCc-----eEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKF--------IDFKIGAE-----SGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--------V~~~~g~~-----~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
.++.|||.|||.++|-+++.++|++||.|.. |.+-+... -|.+.|--.|+..-|+..|. +-.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD-----e~~ 207 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD-----EDE 207 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC-----ccc
Confidence 3556999999999999999999999998753 34444332 38999999999999999884 667
Q ss_pred ecCeEEEEEEcC--ChhHHH----------HHHHHhhhhhcc---cccc--------------ccchhhhhhhhh-----
Q 043731 386 VKNFIAVLEPVT--GEAEKE----------YWSLLRGNQERH---RDVK--------------GEEKHLEAENKA----- 431 (498)
Q Consensus 386 i~g~~~~v~~~~--g~~E~e----------~~~~~~~~~~k~---~~~~--------------~~~~~~~~~~~~----- 431 (498)
++|+.+.|++|. -+.|.. ..+++...|+|. +.-+ .|.=|..+-.++
T Consensus 208 ~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred ccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 889999999883 222221 223344444441 1111 011122221111
Q ss_pred ---hhhhhhcccCCCccceeeeeccCCCCC
Q 043731 432 ---ASEKMIQQEDAQIKPGKFEQHEKPGIS 458 (498)
Q Consensus 432 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (498)
+.+++--+.+|++++-.|--|.|.|.-
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvv 317 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVV 317 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCcee
Confidence 345555678999999999777877753
No 166
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.20 E-value=0.016 Score=48.22 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=44.6
Q ss_pred eeeeccCCCccccH----HHHHHHhccCC-ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 321 SIDTYKDNMDVVMR----EDLKSVFHKFG-TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~vt~----EdLke~F~~fG-~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++++|-|||...+. --|++++.-+| .|-.| ..++|+|+|.+++.|++|..-|. |-.+=|..|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRME-----GEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhc-----ccccccceEEEEE
Confidence 36788999987665 56777888886 67666 46899999999999999988874 5556677777776
Q ss_pred c
Q 043731 396 V 396 (498)
Q Consensus 396 ~ 396 (498)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 5
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.01 E-value=0.01 Score=45.09 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=38.0
Q ss_pred cCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHH
Q 043731 326 KDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKAR 373 (498)
Q Consensus 326 ~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv 373 (498)
.+.+.... +.+...|..||+|..+.+.......||+|.++.+|++|+
T Consensus 7 ~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 7 SGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 34444433 556669999999999999988889999999999999984
No 168
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.0038 Score=67.35 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=56.0
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCc-eEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAE-SGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~-~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+++|=|||.+|+.++|..+|+.||+|+-|.-.+... --||.|=|.-+|+.|+.+|. +..|.|+.+.
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~-----~~~~~~~~~k 143 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALN-----RREIAGKRIK 143 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHH-----HHHhhhhhhc
Confidence 567889999999999999999999999987766544 47999999999999999985 6667766554
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.90 E-value=0.013 Score=59.80 Aligned_cols=72 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred eeeeccCCCccccHHH----H--HHHhccCCceEEEEeecCC---------ceEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 321 SIDTYKDNMDVVMRED----L--KSVFHKFGTVKFIDFKIGA---------ESGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 321 ~~vfv~nL~~~vt~Ed----L--ke~F~~fG~V~~V~~~~g~---------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
.++||-+||.-+-.|+ | .++|++||.|..|.+.+-. -+-||.|.+.|+|++|+++.. |..
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GSL 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----ccc
Confidence 3688888888777766 3 4899999999999887532 123999999999999999873 888
Q ss_pred ecCeEEEEEEcC
Q 043731 386 VKNFIAVLEPVT 397 (498)
Q Consensus 386 i~g~~~~v~~~~ 397 (498)
++|+.+....=+
T Consensus 190 ~DGr~lkatYGT 201 (480)
T COG5175 190 LDGRVLKATYGT 201 (480)
T ss_pred ccCceEeeecCc
Confidence 999988765433
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.89 E-value=0.036 Score=47.77 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=51.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEE-cccccCC-----CCcccceEEEEeCCHHHHHHHHHh-CCeeCCeE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVR-LPRHVAD-----KRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vr-i~r~~~~-----~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~ 183 (498)
...+.|.|=|+|.. ....|.+.|++||.|.... +.++... .-.-.....|+|+++.+|.+||.. +..++|.-
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34577999999988 5677889999999998875 3332100 011246789999999999999996 88888864
Q ss_pred EE-Eeec
Q 043731 184 LH-LKPK 189 (498)
Q Consensus 184 l~-v~~k 189 (498)
|. |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 44 5554
No 171
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.76 E-value=0.011 Score=58.45 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEE------EEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKF------IDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~------V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.||+++|+..++++-|...|.+|-.... -+-..+.+.|||-|.++.++..|+..+ | |..++++++.++.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem---~--gkyVgsrpiklRk 266 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM---N--GKYVGSRPIKLRK 266 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh---c--ccccccchhHhhh
Confidence 4799999999999999999999975433 333345667999999999999998887 3 9999999999885
Q ss_pred cC
Q 043731 396 VT 397 (498)
Q Consensus 396 ~~ 397 (498)
.+
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 172
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.76 E-value=0.0098 Score=58.83 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=59.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|+.+.++.+++...|+.||.|..|.+.. .+++|||.|.+.+.+.+|+. | | |-.|.|+.+.+
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l---~--gs~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-L---D--GSEIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-c---C--Cccccccccee
Confidence 34689999999999999999999999998877764 35579999999999999987 5 4 78888888877
Q ss_pred EE
Q 043731 394 EP 395 (498)
Q Consensus 394 ~~ 395 (498)
..
T Consensus 175 t~ 176 (231)
T KOG4209|consen 175 TL 176 (231)
T ss_pred ee
Confidence 64
No 173
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.026 Score=60.72 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=57.1
Q ss_pred ccceEEeccCCCCCcHHHHHHHhc-cCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFS-QHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~-~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
..|||||++||.-++.++|-.+|. -||.|..|-|=.|.. -+-++|.+=|+|++..+--+||..
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k-~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK-LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc-cCCCCCcceeeecccHHHHHHHhh
Confidence 368999999999999999999999 699999999977743 467899999999999999999986
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.68 E-value=0.017 Score=60.12 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=62.3
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCC--CcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecc
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADK--RLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKK 190 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~--~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~ 190 (498)
.-|-|.||.+.+|.++++.+|+-.|+|..++|.-...+. -...-.|||-|.+...+.-|-.. ...|=|+.|.|.+-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 468899999999999999999999999999986544322 12346899999999998888775 677888888877653
No 175
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.62 E-value=0.011 Score=57.48 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEE
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELH 185 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~ 185 (498)
.||||-||..++|+++|+.+|+.|--...++|+-. .....|||+|++.+.|..|+.. +.|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-----~g~~vaf~~~~~~~~at~am~~---lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-----GGMPVAFADFEEIEQATDAMNH---LQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-----CCcceEeecHHHHHHHHHHHHH---hhcceec
Confidence 47999999999999999999999976666665432 1246899999999999999975 5555554
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.02 Score=62.04 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=57.1
Q ss_pred ccceEEeccCCCC--CcHHH----HHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee-CCe
Q 043731 112 DVRTIAATPLEYD--VKRED----VEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY-AGV 182 (498)
Q Consensus 112 ~~rtV~V~nLp~~--~t~e~----L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~-~G~ 182 (498)
....|+|-|+|.- ...+- |..+|+++|+|+++.+|.+.. +..+|+.|++|.+..+|+.|++. +..+ ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~--ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE--GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc--CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3467888898862 33333 457899999999999998764 34899999999999999999996 3222 334
Q ss_pred EEEEeecchh
Q 043731 183 ELHLKPKKEF 192 (498)
Q Consensus 183 ~l~v~~k~d~ 192 (498)
.+.|..-+++
T Consensus 135 tf~v~~f~d~ 144 (698)
T KOG2314|consen 135 TFFVRLFKDF 144 (698)
T ss_pred eEEeehhhhH
Confidence 4555544443
No 177
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.48 E-value=0.034 Score=61.57 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=57.8
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCcee-eEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVN-SVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~-~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
--|-|-+.|+|++++.+||.+||..|-.+- +|+++++ +.+...|-+-|-|++.++|..|... +..+..+.+.
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n--d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~ 940 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN--DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVS 940 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec--CCCCcccceeEeecCHHHHHhhhhccccCcccceeEE
Confidence 345788999999999999999999997554 5777776 3588999999999999999999974 4444444443
No 178
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.20 E-value=0.087 Score=45.19 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=45.8
Q ss_pred eeeeccCCCccccHHHHHHHhccC--CceEEEEeecC------CceEEEEeCCHHHHHHHHHHHh
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKF--GTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~f--G~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
++|-++|+|...|.++|.+++... |..-++-++.+ .|.|||.|.+++.|.+-..++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 357789999999999999999864 56655555543 4559999999999999988874
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.81 E-value=0.012 Score=58.13 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=59.6
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCce------------------EEEEeCCHHHHHHHHHHHhhcccCC
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES------------------GYIRFEEPEGAQKARAAAVLAQEGG 383 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------------------GfV~F~~~e~A~kAv~~l~~~n~~g 383 (498)
.||+.++|+-....-|+++|+.||.|-.|-+.+...+ |+|+|.+.-.|..+.+.|+ +
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln-----n 150 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN-----N 150 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC-----C
Confidence 6799999999999999999999999999988763322 8999999999999988885 5
Q ss_pred eEecC--------eEEEEEEcCC
Q 043731 384 LSVKN--------FIAVLEPVTG 398 (498)
Q Consensus 384 ~~i~g--------~~~~v~~~~g 398 (498)
..|+| -.|.++.|.+
T Consensus 151 ~~Iggkk~S~~~~dlWNmKYLpr 173 (278)
T KOG3152|consen 151 TPIGGKKKSPFRDDLWNMKYLPR 173 (278)
T ss_pred CccCCCCCCchHHhhhhhhhccC
Confidence 55665 3566777666
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.37 E-value=0.034 Score=58.54 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=49.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-------------------CceEEEEeCCHHHHHHHHHHHh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-------------------AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-------------------~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
..+|.+-|||.+-+-|-|.+||+.+|.|+.|++-.. +..|+|+|++.++|.||.+.+.
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346788999999999999999999999999987432 2238999999999999999873
No 181
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.26 E-value=0.094 Score=53.96 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=60.5
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCC--ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHV--KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G--~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
..-.+||+||-|.+|.++|.+....-| .+..+.+-.+.. .+.+||||.|...+..++++.++- ..+++|+.=.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~-NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRT-NGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhccc-CCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 345799999999999999998888776 444555444444 477999999999999999999985 677888876665
Q ss_pred ec
Q 043731 188 PK 189 (498)
Q Consensus 188 ~k 189 (498)
+-
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 53
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.97 E-value=0.19 Score=46.15 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec-chhH
Q 043731 127 REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK-KEFE 193 (498)
Q Consensus 127 ~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k-~d~~ 193 (498)
..+|.+.|.+||.|.-||+.. |.-+|+|.+-++|-+|+.. +..++|+.|.|..| .+|.
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~---------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG---------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET---------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHHhCCceEEEEEeC---------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 357888999999988886643 4579999999999999996 89999999999998 4455
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.81 E-value=0.031 Score=55.32 Aligned_cols=60 Identities=23% Similarity=0.420 Sum_probs=49.6
Q ss_pred HHHHHHhc-cCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 128 EDVEAFFS-QHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 128 e~L~~~F~-~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
++|...|+ +||+|+.+.++.+.. -+..|-+||.|..+++|++|+.. +..|+|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~--~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG--DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc--hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44444555 899999999988764 45789999999999999999995 88999999986654
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.79 E-value=0.22 Score=45.70 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=45.6
Q ss_pred HHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 335 EDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 335 EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+|-+.|..||+|.-|+|.- +.=+|.|.+...|-+|+.. + |++|+|+.+.+++-+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals~----d--g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALSL----D--GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHHG----C--CSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHcc----C--CcEECCEEEEEEeCCc
Confidence 47888999999998888875 4889999999999998764 3 9999999999998766
No 185
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.94 E-value=0.21 Score=55.63 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=62.1
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceee-EEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCC-eEEEEeec
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNS-VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAG-VELHLKPK 189 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~-Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G-~~l~v~~k 189 (498)
.-.|||.+||..++...+..+|...-.|+. |.|-+-.. .+-.+.|||+|..++++.+|+.- .+.|.| +.|+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~--~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT--DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc--ccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 457999999999999999999999888877 66655443 45678999999998888888874 444555 66778776
Q ss_pred chhHH
Q 043731 190 KEFEA 194 (498)
Q Consensus 190 ~d~~~ 194 (498)
.+|.-
T Consensus 512 ~~~~m 516 (944)
T KOG4307|consen 512 ADYAM 516 (944)
T ss_pred hhHHH
Confidence 66654
No 186
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=92.28 E-value=0.67 Score=39.97 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred CCCccccHHHHHHHhccCCceEEEE-------------eecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 327 DNMDVVMREDLKSVFHKFGTVKFID-------------FKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 327 nL~~~vt~EdLke~F~~fG~V~~V~-------------~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+.|.. .-..+-+.|++||+|.... ...+..--.|+|.++.+|.+|+.. | |..|+|..+-
T Consensus 13 Gfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~----N--G~i~~g~~mv 84 (100)
T PF05172_consen 13 GFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK----N--GTIFSGSLMV 84 (100)
T ss_dssp ---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT----T--TEEETTCEEE
T ss_pred ccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh----C--CeEEcCcEEE
Confidence 56666 3456678999999985553 233334468999999999999765 5 9999997654
No 187
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.28 E-value=0.077 Score=52.59 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=53.4
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCC-------CCcccc----eEEEEeCCHHHHHHHHHh--CCee
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVAD-------KRLFCG----TALIEFSTEEDAEKVLKQ--GLFY 179 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~-------~~~~kG----~aFVeF~s~e~A~kAl~~--~~~~ 179 (498)
.--||+++||+.+...-|+++|++||.|-.|.+-..... .+.+.+ -++|||.+...|.++... +..+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346999999999999999999999999999988643321 011111 378999999999988874 5556
Q ss_pred CCe
Q 043731 180 AGV 182 (498)
Q Consensus 180 ~G~ 182 (498)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 665
No 188
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=92.18 E-value=0.098 Score=54.07 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=64.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE--------EEee------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF--------IDFK------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--------V~~~------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
..++||.+||+.++..+|.+.|.++|.|+. |.+- +.++.|.|.|+++-.|+.|+.-++ +..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gkd 140 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GKD 140 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----ccc
Confidence 447899999999999999999999998743 2221 234458999999999999988764 788
Q ss_pred ecCeEEEEEEcCChhHHHHHH
Q 043731 386 VKNFIAVLEPVTGEAEKEYWS 406 (498)
Q Consensus 386 i~g~~~~v~~~~g~~E~e~~~ 406 (498)
+.|..++|-.|+...=.+|..
T Consensus 141 f~gn~ikvs~a~~r~~ve~~r 161 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTGVESVR 161 (351)
T ss_pred ccCCCchhhhhhhccCccccc
Confidence 888888888887665444443
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.91 E-value=0.51 Score=43.17 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=57.7
Q ss_pred ccccceEEeccCCCCCc-HHH---HHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEE
Q 043731 110 QLDVRTIAATPLEYDVK-RED---VEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVEL 184 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t-~e~---L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l 184 (498)
+..-.||.|+-|..++. .++ +....+.||+|.+|.++- +-.|.|.|.+..+|-+|+.. ....-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 45568999998877763 334 456678899999998753 24699999999999999997 556778888
Q ss_pred EEeecchh
Q 043731 185 HLKPKKEF 192 (498)
Q Consensus 185 ~v~~k~d~ 192 (498)
...|...|
T Consensus 155 qCsWqqrF 162 (166)
T PF15023_consen 155 QCSWQQRF 162 (166)
T ss_pred Eeeccccc
Confidence 88776544
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.87 E-value=0.31 Score=49.25 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=46.0
Q ss_pred HHHHHHHhccCCceEEEEeecCCce-------EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 334 REDLKSVFHKFGTVKFIDFKIGAES-------GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 334 ~EdLke~F~~fG~V~~V~~~~g~~~-------GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++++++-+++||.|..|.|.-.... -||+|+.++.|-+|+=.| | |+.++|+.+....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl---n--GRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL---N--GRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc---C--Cceecceeeehee
Confidence 3678999999999988776543322 599999999999998776 4 9999999887654
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.69 E-value=0.4 Score=37.77 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=40.0
Q ss_pred eeeccCCCccccHHHHHHHhccC----C--ceEEEEeecCCceEEEEeCCHHHHHHHHHHH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKF----G--TVKFIDFKIGAESGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~f----G--~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l 376 (498)
.+.+.+++ ..+-++++.+|..| + .|.|| +..++-|.|.+++.|.+|+.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI----dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI----DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe----cCCcEEEEECCHHHHHHHHHcC
Confidence 34556664 36778999999999 5 37787 5788999999999999998763
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.56 E-value=0.077 Score=54.50 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=56.5
Q ss_pred cccceEEeccCCCCCcHHHHH---HHhccCCceeeEEcccccC--CCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 111 LDVRTIAATPLEYDVKREDVE---AFFSQHVKVNSVRLPRHVA--DKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~---~~F~~~G~V~~Vri~r~~~--~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
+..+-+||-+||.....+.+. ++|.+||.|..|.+.++.. ..-.+...+||+|...++|..|+.. +..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445678999999876555543 6899999999999988652 1111233599999999999999996 67777776
Q ss_pred EE
Q 043731 184 LH 185 (498)
Q Consensus 184 l~ 185 (498)
|.
T Consensus 155 lk 156 (327)
T KOG2068|consen 155 LK 156 (327)
T ss_pred hH
Confidence 54
No 193
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.86 E-value=0.17 Score=50.32 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHHhc-cCCceEEEEeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 335 EDLKSVFH-KFGTVKFIDFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 335 EdLke~F~-~fG~V~~V~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
|+|-.-|+ +||+|..+.+-..- +-.||.|...|+|++|++.|+ +..+.|++|.+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeec
Confidence 45555555 89999887554322 237999999999999999984 99999999988876
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.74 E-value=0.18 Score=50.14 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=56.5
Q ss_pred eeeccCCCccccHHHHHHHhccCCceE----EEEee-cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVK----FIDFK-IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~----~V~~~-~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.++|.||+.-++.|.|.+.|+.||.|. +|+.. +..+.|+|.|...-.|.+|..... ....+++..++.+.|.+.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~-~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR-EGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc-cCccccCCCCCccCCChh
Confidence 579999999999999999999999764 44433 223348999999999999987763 122356777888877765
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.43 E-value=0.27 Score=51.95 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=52.3
Q ss_pred eccCCCccccHHHHHHHhccCCceEEEEe-ecCCceE--EEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 324 TYKDNMDVVMREDLKSVFHKFGTVKFIDF-KIGAESG--YIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 324 fv~nL~~~vt~EdLke~F~~fG~V~~V~~-~~g~~~G--fV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
-++|+|...-||-|..+..+||.|..+.. +.+..++ -|.+...+.+.-|+..++ |..+.+..+.+...
T Consensus 84 Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 84 QIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYI 154 (584)
T ss_pred hHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccC
Confidence 34899999999999999999999987654 3455555 356778888888988874 77777766666544
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.80 E-value=1.8 Score=36.25 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=38.2
Q ss_pred eccCCCccccHHHHHHHhccCCc--eEEEEeecCCceEEEEeCCHHHHHHHHHHHh
Q 043731 324 TYKDNMDVVMREDLKSVFHKFGT--VKFIDFKIGAESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 324 fv~nL~~~vt~EdLke~F~~fG~--V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
|.=..|..=-..||.++|+.||. |.++ +..+|||-..+.+.|..|+..+.
T Consensus 12 FhltFPkeWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 12 FHLTFPKEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEE--TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEeCchHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 43345666667899999999996 5667 68899999999999999988774
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.65 E-value=0.7 Score=50.42 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=58.0
Q ss_pred cceeeeccCCCccccHHHHHHHhcc--CCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHK--FGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~--fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
+.+.+.++.+|+.+-.|++|.||+. +-.+..+.|.- .+.=||.|++..+|+.|...|. +.-.+|.|+.|..++
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-N~nWyITfesd~DAQqAykylr---eevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-NDNWYITFESDTDAQQAYKYLR---EEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-cCceEEEeecchhHHHHHHHHH---HHHHhhcCcchhhhh
Confidence 4557788999999999999999986 66777777763 4567999999999999988874 335667777776665
No 198
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=87.59 E-value=0.41 Score=47.65 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=61.4
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh------CCeeCCeEEEEe
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ------GLFYAGVELHLK 187 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~------~~~~~G~~l~v~ 187 (498)
..|||.||+.-++.+.|++-|+.||+|....++-|. .++..|-++|+|...-.|.+|+.. ..+..+++..|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~--r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD--RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc--cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 689999999999999999999999999987776664 356788899999999999999984 345566666665
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 110 P~e 112 (275)
T KOG0115|consen 110 PME 112 (275)
T ss_pred hhh
Confidence 543
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.98 E-value=1 Score=42.68 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=39.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhcc-CCce---eeEE--cccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQ-HVKV---NSVR--LPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~-~G~V---~~Vr--i~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
.....|.|+.||++.|++++.+.++. ++.- ..+. ...... ....-.-|||.|.+.+++..+...
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~-~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSF-KPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSS-TTS--EEEEEEESSCHHHHHHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccC-CCCcceEEEEEeCCHHHHHHHHHh
Confidence 34568999999999999999987777 5655 2333 111111 111234699999999999998885
No 200
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.87 E-value=0.55 Score=49.65 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=80.9
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAE 401 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E 401 (498)
.+|++||++.++..+|..+|.....--.-.|..-.+.+||..-+..-|.+|++.+ .|...+.|+...+.-...+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~----sgk~elqGkr~e~~~sv~k-- 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETL----SGKVELQGKRQEVEHSVPK-- 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhh----chhhhhcCceeeccchhhH--
Confidence 3578999999999999999986532222334444667999999999999999986 4578888888877643322
Q ss_pred HHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCC
Q 043731 402 KEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKP 455 (498)
Q Consensus 402 ~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (498)
+.+.++ ..+.|..-.-.-+-+..+...+|+..+|-+.|.|+.
T Consensus 77 -----kqrsrk-------~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 77 -----KQRSRK-------IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred -----HHHhhh-------hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 222222 223333334444557778899999999988777753
No 201
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.68 E-value=1.9 Score=36.02 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=37.9
Q ss_pred EEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 116 V~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
||--.||......||.++|+.||.|.--.| - -.+|||.....+.|..|+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi-~--------dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-N--------DTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEE-C--------TTEEEEEECCCHHHHHHHHH
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEE-c--------CCcEEEEeecHHHHHHHHHH
Confidence 444449999999999999999998765444 1 25699999999999999885
No 202
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.51 E-value=2.4 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=40.8
Q ss_pred cceEEeccCCCCCcHHHHHHHhccC---CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHH
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQH---VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK 174 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~---G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~ 174 (498)
...|+|+|+. +++.++|..+|..| .....|.-.-| .+|-|.|.+++.|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD--------tScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD--------TSCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC--------CcEEEEECCHHHHHHHHH
Confidence 4579999985 57889999999999 12345554443 248899999999999996
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.35 E-value=0.41 Score=51.25 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=60.8
Q ss_pred ccccceEEeccCCCCC-cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHH-hCCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDV-KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK-QGLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~-t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~-~~~~~~G~~l~v~ 187 (498)
..+.+++-+.-.|+.. |.++|...|.+||+|.+|.+... .-.|.|+|.+..+|-+|.. .+..|+++.|.+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-------hhhheeeeeccccccchhccccceecCceeEEE
Confidence 4567777777777764 67899999999999999988543 2348999999999977776 4889999999999
Q ss_pred ecch
Q 043731 188 PKKE 191 (498)
Q Consensus 188 ~k~d 191 (498)
|..+
T Consensus 442 whnp 445 (526)
T KOG2135|consen 442 WHNP 445 (526)
T ss_pred EecC
Confidence 8753
No 204
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=85.83 E-value=1 Score=49.30 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred CcceeeeccCCCcc------ccHHHHHHHhccCCceEEEEeecCCce-----EEEEeCCHHHHHHHHHHHhhcccCCeEe
Q 043731 318 GKTSIDTYKDNMDV------VMREDLKSVFHKFGTVKFIDFKIGAES-----GYIRFEEPEGAQKARAAAVLAQEGGLSV 386 (498)
Q Consensus 318 ~~~~~vfv~nL~~~------vt~EdLke~F~~fG~V~~V~~~~g~~~-----GfV~F~~~e~A~kAv~~l~~~n~~g~~i 386 (498)
|..+-|+|.|.|-. .-.--|..+|+++|.|..+.++.+..+ .|+.|.++.+|+.|+..|+ |....
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~----G~~ld 131 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLN----GKRLD 131 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcc----cceec
Confidence 33445677777642 223467889999999988888865444 4899999999999999983 35555
Q ss_pred cCeEEEEEEcCC
Q 043731 387 KNFIAVLEPVTG 398 (498)
Q Consensus 387 ~g~~~~v~~~~g 398 (498)
+++...|+....
T Consensus 132 knHtf~v~~f~d 143 (698)
T KOG2314|consen 132 KNHTFFVRLFKD 143 (698)
T ss_pred ccceEEeehhhh
Confidence 678888887643
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.43 E-value=1.4 Score=40.39 Aligned_cols=48 Identities=33% Similarity=0.437 Sum_probs=38.2
Q ss_pred cCCCccccHHHHHHH---hccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHh
Q 043731 326 KDNMDVVMREDLKSV---FHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 326 ~nL~~~vt~EdLke~---F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
+|+... |||+.+ .+.||+|.+|..- |+.+|.|.|++..+|=+|+.|+.
T Consensus 96 knm~~~---edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 96 KNMQPT---EDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred hcCChH---HHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhc
Confidence 455444 555555 5679999999654 89999999999999999999984
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.57 E-value=4.1 Score=35.76 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=46.8
Q ss_pred eEEeccCCCCCcHHHHHHHhccC-CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEE
Q 043731 115 TIAATPLEYDVKREDVEAFFSQH-VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVEL 184 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~-G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l 184 (498)
.+.+-..|.-++.+.|..+.+.+ ..|..+||+|+.. ..+=.+.+.|.+.++|..+... |||++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~---pnrymVLikF~~~~~Ad~Fy~~---fNGk~F 79 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT---PNRYMVLIKFRDQESADEFYEE---FNGKPF 79 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC---CceEEEEEEECCHHHHHHHHHH---hCCCcc
Confidence 34444445566667787777766 5777899998743 3556899999999999999986 777654
No 207
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=83.38 E-value=1.2 Score=51.86 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=38.9
Q ss_pred CCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHh-hcCcceeecCcceee
Q 043731 37 ESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLR-KSSSLKLSEDGMKVG 96 (498)
Q Consensus 37 ~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk-~S~~leVsedg~kVr 96 (498)
...+|||-|.+||+.-.|--+ +| +.+.|..|+. .|+.++|+.||.|||
T Consensus 473 pDaeGWVYLNLL~NmAQLHii----NV--------TPdFVRsAV~E~StKfQLSpDGrKIR 521 (989)
T PF09421_consen 473 PDAEGWVYLNLLCNMAQLHII----NV--------TPDFVRSAVSEKSTKFQLSPDGRKIR 521 (989)
T ss_pred cccccceehHHHHHHHHHHhh----cc--------CHHHHHHHHHhcccceeeCCCCCeee
Confidence 347899999999998776444 33 3478888887 688999999999998
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.59 E-value=0.76 Score=47.37 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=57.2
Q ss_pred eeeeccCCCccccHHHH---HHHhccCCceEEEEeecCCc---------eEEEEeCCHHHHHHHHHHHhhcccCCeEecC
Q 043731 321 SIDTYKDNMDVVMREDL---KSVFHKFGTVKFIDFKIGAE---------SGYIRFEEPEGAQKARAAAVLAQEGGLSVKN 388 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdL---ke~F~~fG~V~~V~~~~g~~---------~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g 388 (498)
.++|+-+|+..+-+|.+ .+.|++||.|..|...++.. ++||.|+..|+|..|+.... |..++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 35677788876655544 36899999999998877541 27999999999999998763 888888
Q ss_pred eEEEEEEcCChhHHHHHH
Q 043731 389 FIAVLEPVTGEAEKEYWS 406 (498)
Q Consensus 389 ~~~~v~~~~g~~E~e~~~ 406 (498)
+.+....-+-..+--|+.
T Consensus 153 ~~lka~~gttkycs~~l~ 170 (327)
T KOG2068|consen 153 RALKASLGTTKYCSFYLR 170 (327)
T ss_pred hhhHHhhCCCcchhHHhh
Confidence 885444444333333333
No 209
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.90 E-value=4 Score=41.54 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 127 REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 127 ~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
++++.+-..+||+|.+|-|--.....-.-.--.||+|...++|-+|+-. +..|+|+.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 4567788999999999876543321111123489999999999999984 88899988763
No 210
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.11 E-value=2.3 Score=40.34 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=39.6
Q ss_pred eeeccCCCccccHHHHHHHhcc-CCce---EEEEeecCCc--------eEEEEeCCHHHHHHHHHHH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHK-FGTV---KFIDFKIGAE--------SGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~-fG~V---~~V~~~~g~~--------~GfV~F~~~e~A~kAv~~l 376 (498)
.|.|++||...|++++.+..+. +|.- .|+....+.. -|||.|.+.+++..-...+
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 6788999999999999998888 7755 5555333222 2899999999987777765
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.39 E-value=5.8 Score=40.56 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=52.0
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEE-Eeecch
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELH-LKPKKE 191 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~-v~~k~d 191 (498)
.=|-|=+||... ..-|..+|++||.|......++ -.+-+|.|.+.-+|++||.. +..|+|..+. |.+..|
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n-------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN-------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC-------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 335666777654 3567889999999999877632 25789999999999999995 7888886554 555443
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.13 E-value=4.8 Score=41.17 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE-EEEEcCChhH
Q 043731 336 DLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA-VLEPVTGEAE 401 (498)
Q Consensus 336 dLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~-~v~~~~g~~E 401 (498)
-|-.+|++||+|..........-=+|||.+.-+|.||+.. | |..|+|..+ -|.+-+.+.-
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk----n--g~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK----N--GTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred HHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh----c--CeeeccceEEeeeecCCHHH
Confidence 4567899999997776664444579999999999999876 3 899988754 4555455433
No 213
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=73.03 E-value=4.1 Score=47.07 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=58.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC--eEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG--VELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v 186 (498)
...+.+++++|+..+....|...|..||.|..|.+.. -.-||||.|++...++.|+.. +..++| +.|.|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 4467899999999999999999999999999987743 246999999999999999984 555555 45555
Q ss_pred eec
Q 043731 187 KPK 189 (498)
Q Consensus 187 ~~k 189 (498)
...
T Consensus 526 dla 528 (975)
T KOG0112|consen 526 DLA 528 (975)
T ss_pred ccc
Confidence 443
No 214
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=68.26 E-value=4 Score=45.16 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=53.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhc-cCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCe---eCCeEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFS-QHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLF---YAGVEL 184 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~-~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~---~~G~~l 184 (498)
.....|||.||-.-.|.-+|++++. .+|.|....|-+ .|.-|||.|.+.++|...... +.. -|++-|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3457899999999999999999999 678888887733 345699999999998876653 333 255666
Q ss_pred EEee
Q 043731 185 HLKP 188 (498)
Q Consensus 185 ~v~~ 188 (498)
.+.+
T Consensus 515 ~adf 518 (718)
T KOG2416|consen 515 IADF 518 (718)
T ss_pred Eeee
Confidence 6544
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=65.87 E-value=2.9 Score=45.03 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=48.3
Q ss_pred ccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 332 VMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 332 vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
-+.++|...|.+||+|.-+.+.-....|.|.|.+.-+|.+|-+.. +..|+|+-+.|..-
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s~------~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYASH------GAVLNNRFIKLFWH 443 (526)
T ss_pred chHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhccc------cceecCceeEEEEe
Confidence 567999999999999987766655677999999999998885543 88899998887653
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=64.88 E-value=22 Score=28.33 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=42.0
Q ss_pred ccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 330 DVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 330 ~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..++-+++|..+.+|+- .++..++.+=||-|.+..+|++|..+. .|..+-+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tGfYIvF~~~~Ea~rC~~~~-----~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTGFYIVFNDSKEAERCFRAE-----DGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCEEEEEECChHHHHHHHHhc-----CCCEEEEEEEEe
Confidence 34778899999999973 334445666699999999999998864 377776666544
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.35 E-value=13 Score=40.04 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=55.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccC-CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQH-VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~-G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~ 183 (498)
...+.|.|-.+|..+|..||..|...+ -.|..|++.|+.. -++=.+.|.|.+.++|..+..+ |||++
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~---pnrymvLIkFr~q~da~~Fy~e---fNGk~ 139 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM---PNRYMVLIKFRDQADADTFYEE---FNGKQ 139 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC---CceEEEEEEeccchhHHHHHHH---cCCCc
Confidence 347899999999999999999999876 5888999999743 2345799999999999999986 55553
No 218
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=60.42 E-value=11 Score=39.94 Aligned_cols=70 Identities=9% Similarity=0.248 Sum_probs=53.0
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCc---------eEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAE---------SGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~---------~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
.+-|.||...++.+++..+|+-.|.|.-+.+.+..+ ++||.|.|+..+.-|-- | . ...+=|..+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-L--t---ntvfvdrali 82 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-L--T---NTVFVDRALI 82 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-h--c---cceeeeeeEE
Confidence 567899999999999999999999998777665322 38999999988777622 2 2 4566666666
Q ss_pred EEEcC
Q 043731 393 LEPVT 397 (498)
Q Consensus 393 v~~~~ 397 (498)
|.++-
T Consensus 83 v~p~~ 87 (479)
T KOG4676|consen 83 VRPYG 87 (479)
T ss_pred EEecC
Confidence 66653
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=58.41 E-value=26 Score=33.57 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=44.0
Q ss_pred cHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 333 MREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 333 t~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
..+.|+++|..|+.+....+.++=.--.|.|.+.+.|.+|+..+. ..+..+.|..+.+-.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~---~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLH---WDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhc---ccccccCCCceEEEEc
Confidence 447899999999987777777787789999999999999988763 1367788888776554
No 220
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=57.46 E-value=11 Score=35.64 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcC----cceeecCcceeec
Q 043731 39 SDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSS----SLKLSEDGMKVGR 97 (498)
Q Consensus 39 ~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~----~leVsedg~kVrR 97 (498)
.|||||+..+++.|+.+.+.- +++.|..+++.-. .+..-+++..||-
T Consensus 31 ~dGfvpv~~lL~lnq~r~~~~------------t~ddi~riVk~ndKqRF~l~d~~~el~IrA 81 (207)
T KOG2278|consen 31 GDGFVPVEDLLNLNQFRGANH------------TIDDIRRIVKRNDKQRFSLIDEAGELLIRA 81 (207)
T ss_pred CCCceEHHHHhccchhcccCC------------cHHHHHHHHhccccceEEeecCCCcEEEEe
Confidence 899999999999999998852 5778888887543 2322234455653
No 221
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=53.70 E-value=7.6 Score=44.71 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=50.2
Q ss_pred eccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEeec
Q 043731 118 ATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLKPK 189 (498)
Q Consensus 118 V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~~k 189 (498)
+.|.+-..+-.-|..+|++||.|.++++.|+. ..|.|+|.+.+.|-.|+.. .....|.+.+|+.+
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDL-------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecccc-------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 33444456778899999999999999998763 4699999999999999985 33456666666654
No 222
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=45.03 E-value=56 Score=31.31 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=40.5
Q ss_pred cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEEeec
Q 043731 126 KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHLKPK 189 (498)
Q Consensus 126 t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v~~k 189 (498)
....|+++|..|+.+......+. -+-..|.|.+.++|.+|... +..++|..+++-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999998888765442 24489999999999999985 46799999887554
No 223
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=42.80 E-value=12 Score=42.06 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=56.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
...++||+|+...++.+-++.+...+|-|...... .+||-.|..+..+..|+..+. .+.++|..+.+.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---~fgf~~f~~~~~~~ra~r~~t-----~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---KFGFCEFLKHIGDLRASRLLT-----ELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---hhcccchhhHHHHHHHHHHhc-----ccCCCcchhhccc
Confidence 34479999999999999999999999987554322 299999999999999988774 6678887776665
No 224
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=41.74 E-value=1.1e+02 Score=24.40 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred ccccHHHHHHHhccCC-----ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 330 DVVMREDLKSVFHKFG-----TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 330 ~~vt~EdLke~F~~fG-----~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+.++.-+|-.++...+ .|-.|++.. ...||.-.. +.|+.++++++ +..++|+.+.+++|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~-----~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALN-----GKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHT-----T--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhc-----CCCCCCeeEEEEEC
Confidence 3467778888887764 366777664 467777654 47888888884 88999999999875
No 225
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.57 E-value=45 Score=25.59 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHhccCC-ceEEEEeecCCceEEEEeCCHHHHHHHHHHH
Q 043731 335 EDLKSVFHKFG-TVKFIDFKIGAESGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 335 EdLke~F~~fG-~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l 376 (498)
.++-++|.+.| .|.++......+.+++++.. ++.++|.+.|
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L 57 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSEFGILRLIV-SDPDKAKEAL 57 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHH
Confidence 36778888888 58777655544468777654 3344454444
No 226
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=34.42 E-value=51 Score=31.56 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=28.5
Q ss_pred CCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcC--cceee---cCcceeeccc
Q 043731 39 SDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSS--SLKLS---EDGMKVGRSA 99 (498)
Q Consensus 39 ~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~--~leVs---edg~kVrR~~ 99 (498)
++|||+|.-|+...+++.+. + +.+.|.+++..++ -.++. .++..||-..
T Consensus 29 ~~G~v~v~dLL~~~~~~~~~---------~---t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 29 PDGWVSVDDLLRALRFKGLW---------V---TEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp TT--EEHHHHHHHHHHT-TT--------------HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred CCCCEeHHHHHHHHHHcCCC---------C---CHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 89999999999999987553 1 3456666666554 34555 5567787543
No 227
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=33.47 E-value=31 Score=38.94 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=55.2
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..-+|||+|+-..+..+=+..+...||.|-+..... |+|.+|..+.-...|+.. ...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999887764311 789999999999999884 5667888877655
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.11 E-value=81 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCccccHHHHHHHhcc-CC-ceEEEEe---ecCCceEEEEeCCHHHHHHHHHHH
Q 043731 328 NMDVVMREDLKSVFHK-FG-TVKFIDF---KIGAESGYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 328 L~~~vt~EdLke~F~~-fG-~V~~V~~---~~g~~~GfV~F~~~e~A~kAv~~l 376 (498)
.+...+.-++++.+++ || .|..|.. +++...|||++.....|......+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 6778999999999998 78 4666554 445566999999988888774443
No 229
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=31.83 E-value=33 Score=39.80 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=55.5
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+.|++-..+---|..+|++||.|..+..-|+-..|.|.|...+.|-.|+.++. +-.+-+-|-...|-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~---gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQ---GKEVSVTGAPSRVS 369 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhc---CCcccccCCceeEE
Confidence 4556777788889999999999999999988999999999999999999999985 22344445444443
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.85 E-value=12 Score=38.00 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.6
Q ss_pred ccHHHHHHHhccCCceEEEEeec
Q 043731 332 VMREDLKSVFHKFGTVKFIDFKI 354 (498)
Q Consensus 332 vt~EdLke~F~~fG~V~~V~~~~ 354 (498)
.+++.|...|+.||+|+.|+++.
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 56789999999999999999874
No 231
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.54 E-value=2.4e+02 Score=21.00 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=42.1
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCH----HHHHHHHHH
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEP----EGAQKARAA 375 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~----e~A~kAv~~ 375 (498)
+.|.|+...-....++..+.+.-.|..+.+....+..-|.|..+ +...++++.
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 34567888888889999999998899999999999999999865 444555544
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.12 E-value=39 Score=29.86 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred eEEeccCCCC---------CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCC-HHHHHHHHH
Q 043731 115 TIAATPLEYD---------VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFST-EEDAEKVLK 174 (498)
Q Consensus 115 tV~V~nLp~~---------~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s-~e~A~kAl~ 174 (498)
+++|-|+|.. .+.+.|++.|+.|..+. |+.+... .-..|++.|.|.+ ..--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~---~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK---QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET---TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC---CCCcEEEEEEECCChHHHHHHHH
Confidence 5666666553 34578999999998875 4444442 2368999999985 445566665
No 233
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=26.22 E-value=89 Score=29.79 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcCc--ceeecCcceeecc
Q 043731 39 SDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSSS--LKLSEDGMKVGRS 98 (498)
Q Consensus 39 ~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~~--leVsedg~kVrR~ 98 (498)
++|||+|+.++...+.+.. . + +.+.|.+++..+.. .+++ +.+||-.
T Consensus 30 ~~G~v~v~~Ll~~~~~~~~-~--------~---t~~~l~~vV~~d~K~Rf~l~--~~~IRA~ 77 (179)
T PRK00819 30 EEGWVDIDALIEALAKAYK-W--------V---TRELLEAVVESDDKGRFEIS--GDRIRAR 77 (179)
T ss_pred CCCCEEHHHHHHHHHHccC-C--------C---CHHHHHHHHHcCCCcceEec--CceEEec
Confidence 8999999999987654321 0 1 34566666666553 3444 5667644
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.92 E-value=1.3e+02 Score=24.76 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCccccHHHHHHHhcc-CC-ceEEEEe---ecCCceEEEEeCCHHHHHHHHHH
Q 043731 328 NMDVVMREDLKSVFHK-FG-TVKFIDF---KIGAESGYIRFEEPEGAQKARAA 375 (498)
Q Consensus 328 L~~~vt~EdLke~F~~-fG-~V~~V~~---~~g~~~GfV~F~~~e~A~kAv~~ 375 (498)
++...+..+++..+++ || .|..|.. +.+...|||++.....|...-..
T Consensus 21 V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 6778999999999998 78 4555554 44556699999998888776444
No 235
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.29 E-value=46 Score=28.10 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=22.6
Q ss_pred hccccceEEeccCCCCCcHHHHHHHh
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFF 134 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F 134 (498)
-++..|||-|+|||...++++|++..
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 46788999999999999999998653
No 236
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=24.99 E-value=1.5e+02 Score=27.39 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=35.4
Q ss_pred eeeeccCCCccccHHHHHHHhcc-CC-ceEEEEee---cCCceEEEEeCCHHHHHHH
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHK-FG-TVKFIDFK---IGAESGYIRFEEPEGAQKA 372 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~-fG-~V~~V~~~---~g~~~GfV~F~~~e~A~kA 372 (498)
..+|+ ++...+..+|++.+++ || .|..|... .|...|||++....+|...
T Consensus 84 ~yvF~--Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 84 TLVFI--VDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 34565 6778899999999998 77 46665543 3445699999877665433
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.73 E-value=1.4e+02 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCceeeEEccc
Q 043731 127 REDVEAFFSQHVKVNSVRLPR 147 (498)
Q Consensus 127 ~e~L~~~F~~~G~V~~Vri~r 147 (498)
..+|+++|++.|+|.-+-+--
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 368999999999998876643
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.60 E-value=64 Score=32.95 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=22.7
Q ss_pred EEEEeCCHHHHHHHHHhCCeeCCeEEEEeec
Q 043731 159 ALIEFSTEEDAEKVLKQGLFYAGVELHLKPK 189 (498)
Q Consensus 159 aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k 189 (498)
|||+|++..+|..|++.-...+++.+.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeC
Confidence 7999999999999999633344455555544
No 239
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=21.94 E-value=1.1e+02 Score=24.48 Aligned_cols=60 Identities=8% Similarity=0.151 Sum_probs=42.9
Q ss_pred HHHHHHhccCC-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeec
Q 043731 128 EDVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPK 189 (498)
Q Consensus 128 e~L~~~F~~~G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k 189 (498)
++|.+-|...| +|.+|+-++... ++.+-...||+++...+...++.- ..+.|..+.|.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~-~k~pl~mf~veL~p~~~~k~i~~I-k~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRN-TKKPLNMFFVELEPKPNNKEIYKI-KTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCC-CCCCceEEEEeeccCccccceeeh-HhhCCeEEEEecC
Confidence 57888888888 777887666653 456678999999988775555542 3477777877654
No 240
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=21.69 E-value=69 Score=32.64 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=28.5
Q ss_pred cceEEeccCCCC------------CcHHHHHHHhccCCceeeEEcc
Q 043731 113 VRTIAATPLEYD------------VKREDVEAFFSQHVKVNSVRLP 146 (498)
Q Consensus 113 ~rtV~V~nLp~~------------~t~e~L~~~F~~~G~V~~Vri~ 146 (498)
.-|||+.+||-. .+++-|+..|..||.|.+|.||
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 458999999863 3577899999999999999876
No 241
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.76 E-value=2.8e+02 Score=21.77 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHhccCCceEEEEeecC--CceEEEEeCCHHHHHHHHHHHh
Q 043731 335 EDLKSVFHKFGTVKFIDFKIG--AESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 335 EdLke~F~~fG~V~~V~~~~g--~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
.++.+...++| +..+.+.-. .++-|+-+.+++.|+++.+++.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 57788888999 444445544 4556888889999999988874
Done!