Query 043731
Match_columns 498
No_of_seqs 298 out of 2146
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 9.7E-41 3.3E-45 317.4 15.7 178 5-197 9-192 (193)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.6E-29 1.6E-33 248.6 17.5 213 110-465 38-260 (292)
3 3smz_A Protein raver-1, ribonu 100.0 3.4E-28 1.1E-32 241.4 20.2 205 110-465 19-232 (284)
4 1s29_A LA protein; winged heli 100.0 1.4E-29 4.9E-34 212.0 6.9 89 2-102 4-92 (92)
5 4f02_A Polyadenylate-binding p 99.9 1.3E-26 4.5E-31 221.8 19.6 168 111-404 13-186 (213)
6 1l3k_A Heterogeneous nuclear r 99.9 4.1E-26 1.4E-30 213.0 17.3 171 110-403 10-187 (196)
7 3md3_A Nuclear and cytoplasmic 99.9 1.4E-25 4.7E-30 203.0 18.0 157 114-397 1-165 (166)
8 2cqk_A C-MPL binding protein; 99.9 2.1E-27 7.1E-32 201.6 4.8 87 5-105 11-97 (101)
9 2cjk_A Nuclear polyadenylated 99.9 3.7E-26 1.3E-30 207.9 13.1 159 112-399 2-166 (167)
10 1b7f_A Protein (SXL-lethal pro 99.9 3.1E-25 1.1E-29 201.7 18.5 157 112-396 2-168 (168)
11 2qfj_A FBP-interacting repress 99.9 3.3E-25 1.1E-29 209.9 17.3 172 111-399 26-205 (216)
12 1fxl_A Paraneoplastic encephal 99.9 1E-24 3.5E-29 197.4 17.6 155 113-395 2-166 (167)
13 3nmr_A Cugbp ELAV-like family 99.9 1.7E-24 5.9E-29 197.7 16.1 158 112-396 2-174 (175)
14 1fje_B Nucleolin RBD12, protei 99.9 6.2E-24 2.1E-28 195.1 13.1 162 110-399 10-174 (175)
15 3smz_A Protein raver-1, ribonu 99.9 5.2E-23 1.8E-27 204.0 20.7 196 71-403 65-268 (284)
16 2g4b_A Splicing factor U2AF 65 99.9 2.6E-23 9E-28 189.9 16.7 152 112-397 3-172 (172)
17 3pgw_A U1-A; protein-RNA compl 99.9 5.5E-23 1.9E-27 203.6 19.5 258 111-396 7-280 (282)
18 2yh0_A Splicing factor U2AF 65 99.9 1.2E-22 4E-27 189.8 16.4 174 112-399 3-194 (198)
19 2adc_A Polypyrimidine tract-bi 99.9 3.3E-22 1.1E-26 193.3 19.1 190 110-397 31-226 (229)
20 3tyt_A Heterogeneous nuclear r 99.9 1.2E-22 4.2E-27 194.2 15.7 188 112-395 3-203 (205)
21 1qm9_A Polypyrimidine tract-bi 99.9 2.5E-22 8.6E-27 188.5 17.0 188 112-397 2-195 (198)
22 2ghp_A U4/U6 snRNA-associated 99.9 6.1E-22 2.1E-26 197.0 18.1 165 112-399 116-291 (292)
23 3sde_A Paraspeckle component 1 99.9 9.9E-22 3.4E-26 193.7 16.6 152 110-400 19-180 (261)
24 1owx_A Lupus LA protein, SS-B, 99.8 1.2E-19 4.2E-24 159.5 9.1 92 319-413 17-110 (121)
25 3sde_A Paraspeckle component 1 99.7 2.3E-17 7.9E-22 162.4 10.3 123 319-465 21-143 (261)
26 1s79_A Lupus LA protein; RRM, 99.7 1.4E-17 4.7E-22 142.3 7.3 87 110-198 8-95 (103)
27 4f02_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 156.5 10.6 129 320-465 15-149 (213)
28 1fxl_A Paraneoplastic encephal 99.7 5.1E-17 1.7E-21 146.6 10.9 128 321-465 3-136 (167)
29 2cjk_A Nuclear polyadenylated 99.7 3.7E-17 1.3E-21 148.2 9.3 125 321-465 4-135 (167)
30 3nmr_A Cugbp ELAV-like family 99.7 2.6E-17 8.9E-22 149.9 7.9 129 320-465 3-142 (175)
31 3md3_A Nuclear and cytoplasmic 99.7 4.4E-17 1.5E-21 146.9 9.1 129 322-465 2-135 (166)
32 1b7f_A Protein (SXL-lethal pro 99.7 7.9E-17 2.7E-21 146.0 9.9 127 321-465 4-137 (168)
33 3tyt_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 154.5 9.4 140 320-466 4-172 (205)
34 1l3k_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 147.6 10.5 133 320-465 13-152 (196)
35 2qfj_A FBP-interacting repress 99.7 2E-16 6.9E-21 149.3 10.5 140 320-465 28-173 (216)
36 4fxv_A ELAV-like protein 1; RN 99.7 2.4E-16 8.1E-21 133.4 9.5 79 111-190 17-97 (99)
37 2g4b_A Splicing factor U2AF 65 99.7 7.7E-17 2.6E-21 146.8 6.5 126 321-465 5-142 (172)
38 4f25_A Polyadenylate-binding p 99.7 2.5E-16 8.6E-21 136.5 9.3 75 112-189 4-80 (115)
39 2lxi_A RNA-binding protein 10; 99.6 2.3E-16 7.8E-21 131.3 7.1 77 113-190 1-81 (91)
40 2lkz_A RNA-binding protein 5; 99.6 1.3E-15 4.4E-20 128.3 8.7 79 111-190 7-93 (95)
41 3s8s_A Histone-lysine N-methyl 99.6 3E-15 1E-19 129.2 10.6 80 111-191 4-85 (110)
42 3s7r_A Heterogeneous nuclear r 99.6 2.5E-15 8.5E-20 122.9 9.1 78 110-188 8-86 (87)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.3E-15 1.1E-19 121.3 9.7 78 111-189 5-84 (85)
44 2yh0_A Splicing factor U2AF 65 99.6 2.9E-15 1E-19 139.4 8.9 138 321-465 5-162 (198)
45 3ns6_A Eukaryotic translation 99.6 3.6E-15 1.2E-19 126.0 7.6 79 112-191 5-92 (100)
46 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.7E-15 2.3E-19 120.0 9.0 78 112-190 5-84 (87)
47 2e5h_A Zinc finger CCHC-type a 99.6 9.8E-15 3.4E-19 120.9 10.1 78 111-189 14-93 (94)
48 3ucg_A Polyadenylate-binding p 99.6 5.1E-15 1.7E-19 121.2 7.9 79 111-190 4-83 (89)
49 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.6E-19 117.8 9.4 76 114-190 2-79 (83)
50 2cqg_A TDP-43, TAR DNA-binding 99.6 8.6E-15 2.9E-19 123.6 9.2 79 111-190 13-91 (103)
51 1whw_A Hypothetical protein ri 99.6 1.1E-14 3.9E-19 121.8 9.8 79 111-190 6-86 (99)
52 2x1f_A MRNA 3'-END-processing 99.6 1.5E-14 5.1E-19 120.7 10.3 77 113-190 2-80 (96)
53 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-14 4E-19 124.8 9.9 80 110-190 22-102 (109)
54 2mss_A Protein (musashi1); RNA 99.6 6.1E-15 2.1E-19 117.2 7.3 73 115-188 1-74 (75)
55 2cqc_A Arginine/serine-rich sp 99.6 1.2E-14 4.3E-19 120.3 9.4 79 111-190 13-93 (95)
56 2dgs_A DAZ-associated protein 99.5 1.4E-14 4.8E-19 121.4 9.4 79 111-190 8-87 (99)
57 1x5t_A Splicing factor 3B subu 99.5 1.2E-14 4.2E-19 120.8 9.0 78 112-190 4-84 (96)
58 4a8x_A RNA-binding protein wit 99.5 1.1E-14 3.9E-19 118.7 8.6 79 112-190 3-83 (88)
59 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.8E-15 1.6E-19 118.1 6.0 75 114-189 1-76 (77)
60 3p5t_L Cleavage and polyadenyl 99.5 4.5E-15 1.5E-19 122.6 5.7 77 114-191 2-82 (90)
61 2cq0_A Eukaryotic translation 99.5 1.3E-14 4.3E-19 122.5 8.5 80 110-190 12-93 (103)
62 2dnz_A Probable RNA-binding pr 99.5 1.6E-14 5.4E-19 119.9 9.0 78 112-190 4-83 (95)
63 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.6E-14 5.4E-19 121.6 9.1 79 111-190 10-90 (102)
64 1iqt_A AUF1, heterogeneous nuc 99.5 4.7E-15 1.6E-19 117.7 5.4 73 115-188 1-74 (75)
65 1fje_B Nucleolin RBD12, protei 99.5 1.6E-14 5.5E-19 132.1 9.7 126 319-465 12-142 (175)
66 2cq4_A RNA binding motif prote 99.5 1.5E-14 5.3E-19 124.4 8.6 80 110-190 22-102 (114)
67 1x5u_A Splicing factor 3B subu 99.5 2.1E-14 7.2E-19 121.4 9.3 79 111-190 13-93 (105)
68 2ywk_A Putative RNA-binding pr 99.5 1.8E-14 6.2E-19 119.5 8.7 78 111-190 14-93 (95)
69 1oo0_B CG8781-PA, drosophila Y 99.5 2.9E-14 1E-18 121.7 10.2 80 110-190 23-104 (110)
70 2dnm_A SRP46 splicing factor; 99.5 1.6E-14 5.4E-19 121.9 8.3 79 111-190 11-91 (103)
71 4f25_A Polyadenylate-binding p 99.5 1.3E-14 4.5E-19 125.6 7.9 103 321-432 6-112 (115)
72 2kn4_A Immunoglobulin G-bindin 99.5 9.9E-14 3.4E-18 125.8 14.0 75 320-399 70-150 (158)
73 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1E-14 3.5E-19 123.0 6.9 80 110-190 16-96 (100)
74 2i2y_A Fusion protein consists 99.5 1.4E-14 4.8E-19 130.8 8.2 75 320-399 73-148 (150)
75 2do4_A Squamous cell carcinoma 99.5 2.3E-14 7.8E-19 120.3 9.0 79 110-190 14-94 (100)
76 1p27_B RNA-binding protein 8A; 99.5 1.8E-14 6.2E-19 122.1 8.4 80 110-190 20-101 (106)
77 2dgo_A Cytotoxic granule-assoc 99.5 2.4E-14 8.2E-19 123.2 9.2 80 110-190 12-93 (115)
78 2cqd_A RNA-binding region cont 99.5 3.4E-14 1.2E-18 122.5 10.0 80 110-190 14-94 (116)
79 1x4h_A RNA-binding protein 28; 99.5 3.5E-14 1.2E-18 121.1 9.7 79 111-190 13-99 (111)
80 2cpf_A RNA binding motif prote 99.5 2.9E-14 9.8E-19 119.1 9.0 79 112-190 4-86 (98)
81 3lqv_A PRE-mRNA branch site pr 99.5 3.4E-14 1.2E-18 122.3 9.6 75 112-190 7-83 (115)
82 1x5s_A Cold-inducible RNA-bind 99.5 1.7E-14 5.7E-19 121.4 7.5 79 111-190 10-90 (102)
83 2khc_A Testis-specific RNP-typ 99.5 2.2E-14 7.7E-19 124.0 8.4 79 110-189 37-117 (118)
84 2cpy_A RNA-binding protein 12; 99.5 3E-14 1E-18 123.0 9.2 79 111-191 13-93 (114)
85 1x4b_A Heterogeneous nuclear r 99.5 2.2E-14 7.4E-19 123.8 8.2 79 111-190 25-104 (116)
86 2dh8_A DAZ-associated protein 99.5 1.6E-14 5.4E-19 122.4 7.1 79 111-190 14-93 (105)
87 2la6_A RNA-binding protein FUS 99.5 2.6E-14 8.9E-19 119.8 8.4 78 111-189 11-98 (99)
88 1p1t_A Cleavage stimulation fa 99.5 1.8E-14 6.3E-19 121.4 7.5 80 111-191 6-87 (104)
89 2cpz_A CUG triplet repeat RNA- 99.5 2.8E-14 9.5E-19 122.9 8.7 79 111-190 23-103 (115)
90 3pgw_A U1-A; protein-RNA compl 99.5 3.4E-14 1.2E-18 140.3 10.5 136 320-465 9-250 (282)
91 2jrs_A RNA-binding protein 39; 99.5 2.3E-14 8E-19 122.8 8.0 80 110-190 23-104 (108)
92 2cpe_A RNA-binding protein EWS 99.5 4.7E-14 1.6E-18 121.0 9.7 80 110-190 12-101 (113)
93 2cph_A RNA binding motif prote 99.5 4.1E-14 1.4E-18 119.9 9.2 80 110-190 12-95 (107)
94 1qm9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.3E-19 135.2 7.1 135 321-465 4-164 (198)
95 2krb_A Eukaryotic translation 99.5 2E-14 6.7E-19 116.3 6.7 71 113-186 1-80 (81)
96 1wi8_A EIF-4B, eukaryotic tran 99.5 6.6E-14 2.3E-18 118.4 10.3 79 111-190 13-92 (104)
97 3r27_A HnRNP L, heterogeneous 99.5 6.4E-14 2.2E-18 119.2 9.9 78 319-399 20-97 (100)
98 2jwn_A Embryonic polyadenylate 99.5 3.6E-14 1.2E-18 123.8 8.5 81 109-190 32-113 (124)
99 2dgp_A Bruno-like 4, RNA bindi 99.5 3.2E-14 1.1E-18 120.5 7.8 80 110-190 10-94 (106)
100 1wg5_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 120.0 8.5 77 111-189 13-91 (104)
101 1sjq_A Polypyrimidine tract-bi 99.5 2.5E-14 8.4E-19 122.8 7.0 77 320-399 16-92 (105)
102 2err_A Ataxin-2-binding protei 99.5 4.4E-14 1.5E-18 121.1 8.6 78 110-190 26-105 (109)
103 2adc_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 136.6 8.9 137 319-465 33-195 (229)
104 2dng_A Eukaryotic translation 99.5 6.2E-14 2.1E-18 118.4 9.0 78 111-190 13-91 (103)
105 2cq3_A RNA-binding protein 9; 99.5 9.6E-14 3.3E-18 117.1 10.1 78 110-190 12-91 (103)
106 2ek1_A RNA-binding protein 12; 99.5 3.8E-14 1.3E-18 117.5 7.4 77 112-189 14-92 (95)
107 1sjq_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 121.9 7.3 73 111-190 14-90 (105)
108 2div_A TRNA selenocysteine ass 99.5 3.7E-14 1.3E-18 118.6 7.3 78 111-189 7-91 (99)
109 3n9u_C Cleavage and polyadenyl 99.5 1.1E-13 3.8E-18 126.7 11.1 79 112-191 54-136 (156)
110 2d9p_A Polyadenylate-binding p 99.5 4.5E-14 1.5E-18 119.1 7.8 78 110-190 12-91 (103)
111 2fy1_A RNA-binding motif prote 99.5 5.4E-14 1.8E-18 122.1 8.5 78 111-190 5-84 (116)
112 2cqi_A Nucleolysin TIAR; RNA r 99.5 7.3E-14 2.5E-18 117.8 9.0 78 110-190 12-91 (103)
113 3ulh_A THO complex subunit 4; 99.5 7.8E-14 2.7E-18 118.3 9.1 77 111-189 27-105 (107)
114 2kn4_A Immunoglobulin G-bindin 99.5 2.4E-14 8.3E-19 129.9 6.4 79 111-190 68-148 (158)
115 3ex7_B RNA-binding protein 8A; 99.5 7.2E-14 2.5E-18 122.1 9.1 80 110-190 19-100 (126)
116 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.6E-14 2.9E-18 123.3 9.6 78 110-188 60-139 (140)
117 1x4e_A RNA binding motif, sing 99.5 1.7E-14 6E-19 117.3 4.7 76 112-188 4-81 (85)
118 2nlw_A Eukaryotic translation 99.5 5.4E-14 1.8E-18 119.7 7.7 78 111-191 13-99 (105)
119 2dgv_A HnRNP M, heterogeneous 99.5 5.5E-14 1.9E-18 115.9 7.4 77 111-190 6-84 (92)
120 2dnh_A Bruno-like 5, RNA bindi 99.5 7.8E-14 2.7E-18 117.9 8.5 78 111-190 13-95 (105)
121 2cqp_A RNA-binding protein 12; 99.5 5.3E-14 1.8E-18 117.5 7.3 79 111-190 13-93 (98)
122 2cpi_A CCR4-NOT transcription 99.5 5.5E-14 1.9E-18 120.8 7.6 80 111-190 13-99 (111)
123 1x4a_A Splicing factor, argini 99.5 1.2E-13 4.2E-18 117.8 9.7 76 111-190 20-97 (109)
124 2dnn_A RNA-binding protein 12; 99.5 9.6E-14 3.3E-18 119.8 8.9 76 112-190 15-91 (109)
125 3r27_A HnRNP L, heterogeneous 99.5 1.3E-13 4.4E-18 117.4 9.4 74 110-190 18-95 (100)
126 2db1_A Heterogeneous nuclear r 99.5 7.1E-14 2.4E-18 121.7 8.0 78 111-190 15-96 (118)
127 2do0_A HnRNP M, heterogeneous 99.5 1.2E-13 4.2E-18 118.4 9.4 78 111-190 13-92 (114)
128 2kxn_B Transformer-2 protein h 99.5 7E-14 2.4E-18 123.8 8.0 79 111-190 44-124 (129)
129 2dgx_A KIAA0430 protein; RRM d 99.5 1.2E-13 4E-18 115.5 8.8 75 112-190 8-88 (96)
130 1x4d_A Matrin 3; structural ge 99.5 7.6E-14 2.6E-18 119.1 7.7 78 319-399 14-92 (102)
131 1u6f_A Tcubp1, RNA-binding pro 99.5 6.7E-14 2.3E-18 124.4 7.6 80 110-190 39-120 (139)
132 2xs2_A Deleted in azoospermia- 99.5 3.8E-14 1.3E-18 119.3 5.7 78 110-189 6-83 (102)
133 1h2v_Z 20 kDa nuclear CAP bind 99.5 9.9E-14 3.4E-18 126.0 8.8 80 111-191 37-118 (156)
134 2cq1_A PTB-like protein L; RRM 99.5 1.5E-13 5E-18 117.0 9.2 73 111-190 13-89 (101)
135 2ki2_A SS-DNA binding protein 99.5 2E-14 7E-19 118.1 3.7 75 114-190 2-78 (90)
136 2dgw_A Probable RNA-binding pr 99.5 1.5E-13 5.1E-18 113.3 8.8 77 111-190 8-85 (91)
137 1wez_A HnRNP H', FTP-3, hetero 99.5 4.8E-14 1.6E-18 119.8 6.0 76 111-189 13-89 (102)
138 2cq1_A PTB-like protein L; RRM 99.5 1.6E-13 5.3E-18 116.9 9.1 77 320-399 15-91 (101)
139 1x4d_A Matrin 3; structural ge 99.5 1.2E-13 4.1E-18 117.9 8.1 72 112-190 14-90 (102)
140 2ad9_A Polypyrimidine tract-bi 99.4 1.5E-13 5.2E-18 120.5 8.4 73 111-190 29-105 (119)
141 2dis_A Unnamed protein product 99.4 1.5E-13 5.1E-18 117.0 8.1 79 111-190 6-90 (109)
142 2dhg_A TRNA selenocysteine ass 99.4 8.6E-14 2.9E-18 117.4 6.4 78 111-190 7-88 (104)
143 1fj7_A Nucleolin RBD1, protein 99.4 3.3E-14 1.1E-18 119.5 3.8 79 110-190 14-93 (101)
144 2wbr_A GW182, gawky, LD47780P; 99.4 2.8E-13 9.6E-18 112.4 9.1 71 322-397 9-79 (89)
145 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4.3E-18 123.1 7.4 79 111-190 45-125 (135)
146 2kt5_A RNA and export factor-b 99.4 2.4E-13 8.3E-18 118.7 9.0 78 111-190 33-112 (124)
147 2ytc_A PRE-mRNA-splicing facto 99.4 3E-13 1E-17 109.7 8.8 72 111-189 10-84 (85)
148 2hgl_A HNRPF protein, heteroge 99.4 1.3E-13 4.3E-18 123.7 7.1 78 111-190 42-123 (136)
149 2m2b_A RNA-binding protein 10; 99.4 6.1E-14 2.1E-18 124.0 4.9 78 111-190 21-106 (131)
150 1nu4_A U1A RNA binding domain; 99.4 2.1E-13 7.1E-18 113.5 7.8 77 111-191 6-88 (97)
151 3d2w_A TAR DNA-binding protein 99.4 2.8E-13 9.6E-18 112.1 8.5 74 111-190 9-82 (89)
152 4fxv_A ELAV-like protein 1; RN 99.4 4E-13 1.4E-17 113.5 9.5 73 320-397 19-97 (99)
153 1wex_A Hypothetical protein (r 99.4 3E-13 1E-17 115.7 8.6 73 111-190 13-89 (104)
154 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.1E-13 1.1E-17 124.1 9.3 80 110-190 69-150 (165)
155 1wex_A Hypothetical protein (r 99.4 2.5E-13 8.7E-18 116.1 8.0 76 320-398 15-90 (104)
156 2lmi_A GRSF-1, G-rich sequence 99.4 1.1E-13 3.7E-18 118.2 5.7 78 111-190 9-90 (107)
157 2dha_A FLJ20171 protein; RRM d 99.4 1.8E-13 6E-18 120.7 7.1 78 111-190 21-103 (123)
158 2ad9_A Polypyrimidine tract-bi 99.4 1.3E-13 4.4E-18 121.0 6.1 77 320-399 31-107 (119)
159 3s8s_A Histone-lysine N-methyl 99.4 1.1E-12 3.7E-17 113.1 11.5 84 320-408 6-96 (110)
160 2dnl_A Cytoplasmic polyadenyla 99.4 4.1E-13 1.4E-17 115.9 8.8 77 111-188 6-84 (114)
161 1wf0_A TDP-43, TAR DNA-binding 99.4 2.4E-13 8.1E-18 111.5 6.9 73 112-190 4-76 (88)
162 2fc9_A NCL protein; structure 99.4 5.6E-13 1.9E-17 111.9 9.2 75 111-190 13-89 (101)
163 2hgm_A HNRPF protein, heteroge 99.4 2E-13 7E-18 120.8 6.6 77 111-190 40-119 (126)
164 1whx_A Hypothetical protein ri 99.4 3.7E-13 1.3E-17 115.9 8.1 74 110-190 7-82 (111)
165 2wbr_A GW182, gawky, LD47780P; 99.4 3.5E-13 1.2E-17 111.8 7.6 71 113-190 7-79 (89)
166 1x4f_A Matrin 3; structural ge 99.4 1.2E-13 4.3E-18 119.8 5.0 79 319-400 24-103 (112)
167 2xnq_A Nuclear polyadenylated 99.4 7E-13 2.4E-17 111.3 9.5 73 109-190 18-93 (97)
168 1wel_A RNA-binding protein 12; 99.4 1.7E-13 5.8E-18 119.9 5.9 80 111-191 23-103 (124)
169 1x4g_A Nucleolysin TIAR; struc 99.4 4.9E-13 1.7E-17 114.1 8.4 74 110-190 22-97 (109)
170 2jvr_A Nucleolar protein 3; RN 99.4 5.3E-13 1.8E-17 115.6 8.6 74 112-190 27-103 (111)
171 1x5o_A RNA binding motif, sing 99.4 4.8E-13 1.6E-17 114.8 8.2 78 111-190 23-110 (114)
172 2dnq_A RNA-binding protein 4B; 99.4 5.8E-13 2E-17 109.6 8.3 71 111-190 6-78 (90)
173 2la4_A Nuclear and cytoplasmic 99.4 4.8E-13 1.7E-17 112.3 7.6 73 111-190 25-99 (101)
174 2jvo_A Nucleolar protein 3; nu 99.4 8.6E-13 2.9E-17 113.1 9.0 73 109-190 27-101 (108)
175 2cpj_A Non-POU domain-containi 99.4 5E-13 1.7E-17 112.0 7.3 73 111-190 13-87 (99)
176 1fjc_A Nucleolin RBD2, protein 99.4 5.1E-13 1.7E-17 111.0 7.3 75 110-190 13-89 (96)
177 2a3j_A U1 small nuclear ribonu 99.4 5.2E-13 1.8E-17 118.3 7.7 76 112-191 28-109 (127)
178 1why_A Hypothetical protein ri 99.4 8.3E-13 2.9E-17 110.2 8.4 73 111-190 15-91 (97)
179 2hvz_A Splicing factor, argini 99.4 3.6E-13 1.2E-17 113.2 6.0 71 114-190 1-73 (101)
180 2hgn_A Heterogeneous nuclear r 99.4 2.1E-13 7.4E-18 122.7 4.9 76 111-189 44-120 (139)
181 1x4f_A Matrin 3; structural ge 99.4 3.3E-13 1.1E-17 117.1 5.9 72 112-190 24-100 (112)
182 3md1_A Nuclear and cytoplasmic 99.4 1.4E-12 4.7E-17 105.2 9.0 74 321-399 2-81 (83)
183 3q2s_C Cleavage and polyadenyl 99.4 7.1E-13 2.4E-17 128.7 8.7 79 112-191 67-149 (229)
184 3lqv_A PRE-mRNA branch site pr 99.4 6.8E-13 2.3E-17 114.1 7.3 99 320-443 8-109 (115)
185 1x4c_A Splicing factor, argini 99.4 1.4E-12 4.7E-17 111.4 8.8 72 111-190 13-91 (108)
186 1whw_A Hypothetical protein ri 99.4 1.8E-12 6E-17 108.3 9.1 78 319-401 7-90 (99)
187 2cpx_A Hypothetical protein FL 99.4 2.5E-13 8.7E-18 116.6 3.9 79 111-190 23-103 (115)
188 2lcw_A RNA-binding protein FUS 99.0 6.4E-14 2.2E-18 121.0 0.0 79 111-190 5-93 (116)
189 2dgt_A RNA-binding protein 30; 99.4 2.3E-12 7.9E-17 106.4 9.3 71 111-190 8-80 (92)
190 1why_A Hypothetical protein ri 99.4 1.8E-12 6.1E-17 108.1 8.7 76 319-399 16-93 (97)
191 2jvr_A Nucleolar protein 3; RN 99.4 1.2E-12 4.1E-17 113.3 7.8 76 320-400 28-106 (111)
192 2ytc_A PRE-mRNA-splicing facto 99.3 1.6E-12 5.6E-17 105.4 8.0 74 319-396 11-84 (85)
193 2dgu_A Heterogeneous nuclear r 99.3 1.6E-12 5.5E-17 109.7 8.2 70 112-190 10-81 (103)
194 2lxi_A RNA-binding protein 10; 99.3 1.4E-13 4.9E-18 114.3 1.6 76 321-400 2-84 (91)
195 1whx_A Hypothetical protein ri 99.3 1.2E-12 4.1E-17 112.6 7.4 74 320-398 10-83 (111)
196 2dnp_A RNA-binding protein 14; 99.3 1.9E-12 6.5E-17 106.5 8.2 71 111-190 7-79 (90)
197 2dgx_A KIAA0430 protein; RRM d 99.3 3.4E-12 1.2E-16 106.6 9.8 75 320-399 9-90 (96)
198 2cq3_A RNA-binding protein 9; 99.3 4.6E-12 1.6E-16 106.7 10.6 76 319-399 14-93 (103)
199 2dgt_A RNA-binding protein 30; 99.3 4.2E-12 1.4E-16 104.8 9.9 74 319-399 9-82 (92)
200 4a8x_A RNA-binding protein wit 99.3 1.6E-12 5.4E-17 105.9 7.2 74 320-398 4-84 (88)
201 2kvi_A Nuclear polyadenylated 99.3 1.2E-12 4.3E-17 109.1 6.6 71 111-190 8-81 (96)
202 2hzc_A Splicing factor U2AF 65 99.3 2.3E-12 7.9E-17 104.8 8.0 70 111-187 4-85 (87)
203 1wg1_A KIAA1579 protein, homol 99.3 2.3E-12 7.8E-17 105.8 8.0 70 112-189 4-75 (88)
204 2i2y_A Fusion protein consists 99.3 1.2E-12 4.1E-17 118.0 6.8 75 110-190 70-146 (150)
205 3bs9_A Nucleolysin TIA-1 isofo 99.3 3.4E-12 1.2E-16 103.8 8.8 75 320-399 6-86 (87)
206 1x4c_A Splicing factor, argini 99.3 3.8E-12 1.3E-16 108.6 9.4 73 320-398 15-92 (108)
207 2x1f_A MRNA 3'-END-processing 99.3 4E-12 1.4E-16 105.8 9.3 77 321-402 3-85 (96)
208 2fc8_A NCL protein; structure 99.3 2.7E-12 9.1E-17 107.8 8.2 77 110-190 12-90 (102)
209 2dnp_A RNA-binding protein 14; 99.3 3.5E-12 1.2E-16 104.9 8.7 74 319-399 8-81 (90)
210 2do4_A Squamous cell carcinoma 99.3 7E-12 2.4E-16 105.0 10.7 75 320-399 17-96 (100)
211 2cpd_A Apobec-1 stimulating pr 99.3 4.5E-12 1.6E-16 106.1 9.5 71 111-190 13-87 (99)
212 3mdf_A Peptidyl-prolyl CIS-tra 99.3 4.2E-12 1.4E-16 102.8 8.8 72 320-396 7-84 (85)
213 2e5j_A Methenyltetrahydrofolat 99.3 1.6E-12 5.5E-17 108.6 6.5 74 111-190 17-92 (97)
214 2cpj_A Non-POU domain-containi 99.3 2.1E-12 7.3E-17 108.1 7.2 75 320-399 15-89 (99)
215 2dnq_A RNA-binding protein 4B; 99.3 4E-12 1.4E-16 104.6 8.6 74 319-399 7-80 (90)
216 1x4g_A Nucleolysin TIAR; struc 99.3 3.3E-12 1.1E-16 108.9 8.4 75 320-399 25-99 (109)
217 2f3j_A RNA and export factor b 99.3 2.4E-12 8.1E-17 120.2 8.1 77 112-190 87-165 (177)
218 2cqh_A IGF-II mRNA-binding pro 99.3 2E-12 7E-17 106.8 6.8 72 111-190 6-81 (93)
219 3egn_A RNA-binding protein 40; 99.3 1.7E-12 5.7E-17 116.1 6.6 79 111-190 43-128 (143)
220 2cqi_A Nucleolysin TIAR; RNA r 99.3 6.1E-12 2.1E-16 105.9 9.7 76 320-400 15-94 (103)
221 1wf1_A RNA-binding protein RAL 99.3 2.6E-12 9E-17 109.7 7.4 70 112-190 26-98 (110)
222 3pgw_S U1-70K; protein-RNA com 99.3 2.4E-12 8.2E-17 136.3 8.7 77 320-401 102-184 (437)
223 2cq2_A Hypothetical protein LO 99.3 2.5E-12 8.5E-17 111.9 7.2 74 320-398 25-105 (114)
224 2dnh_A Bruno-like 5, RNA bindi 99.3 2.7E-12 9.2E-17 108.4 7.2 79 319-402 14-100 (105)
225 2dgu_A Heterogeneous nuclear r 99.3 6.7E-12 2.3E-16 105.9 9.5 76 319-401 10-85 (103)
226 3ns6_A Eukaryotic translation 99.3 2.3E-12 7.8E-17 108.6 6.4 75 319-398 5-92 (100)
227 3s7r_A Heterogeneous nuclear r 99.3 6.4E-12 2.2E-16 102.4 8.6 71 320-396 11-87 (87)
228 2cph_A RNA binding motif prote 99.3 5.7E-12 2E-16 106.6 8.6 78 319-400 14-98 (107)
229 2dgv_A HnRNP M, heterogeneous 99.3 3.4E-12 1.2E-16 105.0 7.0 76 319-399 7-86 (92)
230 2err_A Ataxin-2-binding protei 99.3 4.7E-12 1.6E-16 108.4 8.1 76 319-399 28-107 (109)
231 2j8a_A Histone-lysine N-methyl 99.3 3.5E-12 1.2E-16 112.9 7.3 77 114-191 3-95 (136)
232 2d9p_A Polyadenylate-binding p 99.3 2.9E-12 9.8E-17 108.0 6.5 77 320-401 15-95 (103)
233 2la4_A Nuclear and cytoplasmic 99.3 2.8E-12 9.6E-17 107.6 6.4 73 320-397 27-99 (101)
234 3ulh_A THO complex subunit 4; 99.3 8.3E-12 2.9E-16 105.7 9.3 75 319-398 28-107 (107)
235 2e5g_A U6 snRNA-specific termi 99.3 5.4E-12 1.8E-16 104.7 8.0 73 111-189 6-79 (94)
236 2lkz_A RNA-binding protein 5; 99.3 4.3E-12 1.5E-16 106.7 7.4 75 322-397 11-93 (95)
237 2cpf_A RNA binding motif prote 99.3 4.6E-12 1.6E-16 105.6 7.5 75 320-399 5-88 (98)
238 2ywk_A Putative RNA-binding pr 99.3 6.4E-12 2.2E-16 104.0 8.3 73 320-397 16-93 (95)
239 2cqb_A Peptidyl-prolyl CIS-tra 99.3 7.4E-12 2.5E-16 105.1 8.5 76 319-399 11-92 (102)
240 3d2w_A TAR DNA-binding protein 99.3 1.1E-11 3.8E-16 102.5 9.3 76 320-402 11-87 (89)
241 2e5h_A Zinc finger CCHC-type a 99.3 1.8E-11 6E-16 101.1 10.5 73 319-396 15-93 (94)
242 2dnm_A SRP46 splicing factor; 99.3 7.4E-12 2.5E-16 105.4 8.2 75 319-398 12-92 (103)
243 2dnz_A Probable RNA-binding pr 99.3 9.5E-12 3.2E-16 102.9 8.6 75 320-399 5-85 (95)
244 2cqc_A Arginine/serine-rich sp 99.3 1.8E-11 6.1E-16 101.2 10.2 74 319-397 14-93 (95)
245 2dis_A Unnamed protein product 99.3 4E-12 1.4E-16 108.0 6.3 80 319-401 7-94 (109)
246 2jvo_A Nucleolar protein 3; nu 99.3 8.7E-12 3E-16 106.8 8.4 76 319-401 30-105 (108)
247 2hvz_A Splicing factor, argini 99.3 3.4E-12 1.2E-16 107.1 5.7 74 322-400 2-76 (101)
248 2pe8_A Splicing factor 45; RRM 99.3 1.5E-11 5.3E-16 105.1 9.9 80 111-190 6-92 (105)
249 1x4a_A Splicing factor, argini 99.3 1.1E-11 3.7E-16 105.6 8.9 74 320-398 22-98 (109)
250 1p1t_A Cleavage stimulation fa 99.3 5.5E-12 1.9E-16 106.2 6.9 81 321-406 9-95 (104)
251 1s79_A Lupus LA protein; RRM, 99.3 3.6E-12 1.2E-16 108.6 5.8 72 320-397 11-87 (103)
252 2cpi_A CCR4-NOT transcription 99.3 6.8E-12 2.3E-16 107.6 7.6 75 320-399 15-101 (111)
253 2dgo_A Cytotoxic granule-assoc 99.3 1.1E-11 3.6E-16 106.5 8.8 75 320-399 15-95 (115)
254 2jrs_A RNA-binding protein 39; 99.3 5.4E-12 1.8E-16 108.0 6.8 77 319-400 25-107 (108)
255 2xnq_A Nuclear polyadenylated 99.3 1.4E-11 4.8E-16 103.3 9.2 72 320-398 22-94 (97)
256 1nu4_A U1A RNA binding domain; 99.3 9E-12 3.1E-16 103.5 7.8 78 320-402 8-92 (97)
257 1x4h_A RNA-binding protein 28; 99.3 1E-11 3.5E-16 105.7 8.4 81 320-400 15-102 (111)
258 1x5t_A Splicing factor 3B subu 99.3 5.6E-12 1.9E-16 104.6 6.5 75 320-399 5-86 (96)
259 1oo0_B CG8781-PA, drosophila Y 99.3 1.9E-11 6.4E-16 104.1 9.8 76 319-399 25-106 (110)
260 1x5p_A Negative elongation fac 99.3 1.7E-11 5.7E-16 102.3 9.3 71 111-190 13-85 (97)
261 2nlw_A Eukaryotic translation 99.3 9E-12 3.1E-16 105.8 7.7 74 320-398 15-99 (105)
262 3pgw_S U1-70K; protein-RNA com 99.3 8.8E-12 3E-16 132.0 9.5 79 111-190 100-180 (437)
263 2cq0_A Eukaryotic translation 99.3 1.5E-11 5E-16 103.6 8.9 75 320-399 15-95 (103)
264 1p27_B RNA-binding protein 8A; 99.3 1.3E-11 4.5E-16 104.3 8.5 75 319-398 22-102 (106)
265 2e44_A Insulin-like growth fac 99.3 6.7E-12 2.3E-16 104.2 6.6 74 112-190 14-90 (96)
266 1x5u_A Splicing factor 3B subu 99.3 1.3E-11 4.6E-16 104.1 8.5 76 319-399 14-95 (105)
267 2cpz_A CUG triplet repeat RNA- 99.3 1E-11 3.5E-16 106.7 7.9 75 320-399 25-105 (115)
268 2dgs_A DAZ-associated protein 99.2 1.6E-11 5.4E-16 102.6 8.7 76 319-400 9-90 (99)
269 3beg_B Splicing factor, argini 99.2 6.3E-12 2.2E-16 108.7 6.4 64 112-183 15-80 (115)
270 2fy1_A RNA-binding motif prote 99.2 8.4E-12 2.9E-16 108.2 7.1 75 320-399 7-86 (116)
271 2do0_A HnRNP M, heterogeneous 99.2 2.5E-11 8.6E-16 103.9 10.0 74 320-398 15-93 (114)
272 3ucg_A Polyadenylate-binding p 99.2 1.3E-11 4.5E-16 100.7 7.8 71 321-397 7-83 (89)
273 2cqh_A IGF-II mRNA-binding pro 99.2 3.6E-12 1.2E-16 105.3 4.4 76 319-400 7-84 (93)
274 2cpd_A Apobec-1 stimulating pr 99.2 2.4E-11 8.2E-16 101.6 9.4 73 320-399 15-89 (99)
275 2rs2_A Musashi-1, RNA-binding 99.2 1.2E-11 4.1E-16 105.9 7.7 75 320-400 25-105 (109)
276 1wg1_A KIAA1579 protein, homol 99.2 1.4E-11 4.8E-16 101.0 7.7 73 320-398 5-77 (88)
277 2e44_A Insulin-like growth fac 99.2 9E-12 3.1E-16 103.4 6.6 75 320-399 15-92 (96)
278 1x5p_A Negative elongation fac 99.2 2.9E-11 9.8E-16 100.9 9.6 73 320-399 15-87 (97)
279 2la6_A RNA-binding protein FUS 99.2 1.2E-11 4.1E-16 103.5 7.2 73 320-397 13-99 (99)
280 3ex7_B RNA-binding protein 8A; 99.2 1.7E-11 5.7E-16 107.0 8.4 76 319-399 21-102 (126)
281 3p5t_L Cleavage and polyadenyl 99.2 3.4E-12 1.2E-16 105.2 3.7 73 322-399 3-83 (90)
282 2cq2_A Hypothetical protein LO 99.2 1.3E-11 4.3E-16 107.5 7.3 71 112-189 24-103 (114)
283 1wi8_A EIF-4B, eukaryotic tran 99.2 1.8E-11 6.2E-16 103.3 8.1 74 320-400 15-95 (104)
284 2dgp_A Bruno-like 4, RNA bindi 99.2 1.3E-11 4.5E-16 104.3 7.3 77 319-400 12-97 (106)
285 2cq4_A RNA binding motif prote 99.2 2.1E-11 7.2E-16 104.6 8.5 75 321-401 26-106 (114)
286 2dh8_A DAZ-associated protein 99.2 1.8E-11 6.3E-16 103.3 7.8 76 319-400 15-96 (105)
287 3n9u_C Cleavage and polyadenyl 99.2 2.7E-11 9.1E-16 110.8 9.4 79 320-403 55-141 (156)
288 1x5s_A Cold-inducible RNA-bind 99.2 1.1E-11 3.7E-16 104.1 6.2 76 319-399 11-92 (102)
289 2khc_A Testis-specific RNP-typ 99.2 1.7E-11 5.7E-16 105.8 7.5 72 320-396 40-117 (118)
290 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 3.2E-11 1.1E-15 106.6 9.5 73 319-396 62-140 (140)
291 2cpe_A RNA-binding protein EWS 99.2 2.1E-11 7.3E-16 104.3 8.1 77 319-400 14-104 (113)
292 2mss_A Protein (musashi1); RNA 99.2 5.6E-12 1.9E-16 99.9 4.1 68 323-396 2-75 (75)
293 2kvi_A Nuclear polyadenylated 99.2 1.1E-11 3.9E-16 103.2 6.0 74 319-399 9-83 (96)
294 3zzy_A Polypyrimidine tract-bi 99.2 3E-11 1E-15 107.5 9.0 72 113-190 28-104 (130)
295 2krb_A Eukaryotic translation 99.2 6.1E-12 2.1E-16 101.5 4.2 68 321-393 2-80 (81)
296 2kt5_A RNA and export factor-b 99.2 3.2E-11 1.1E-15 105.1 9.0 75 319-398 34-113 (124)
297 2div_A TRNA selenocysteine ass 99.2 1.7E-11 5.7E-16 102.4 6.9 75 319-398 8-93 (99)
298 2hzc_A Splicing factor U2AF 65 99.2 1.7E-11 5.9E-16 99.6 6.6 70 320-395 6-86 (87)
299 2cqp_A RNA-binding protein 12; 99.2 9.3E-12 3.2E-16 103.7 5.1 74 320-398 15-94 (98)
300 2a3j_A U1 small nuclear ribonu 99.2 1.6E-11 5.3E-16 108.7 6.8 79 320-403 29-114 (127)
301 2cqg_A TDP-43, TAR DNA-binding 99.2 4.7E-11 1.6E-15 100.4 9.4 76 319-401 14-95 (103)
302 1uaw_A Mouse-musashi-1; RNP-ty 99.2 7.6E-12 2.6E-16 99.4 4.2 69 322-396 2-76 (77)
303 1u6f_A Tcubp1, RNA-binding pro 99.2 1.6E-11 5.5E-16 108.9 6.4 77 320-401 42-124 (139)
304 3beg_B Splicing factor, argini 99.2 1.5E-11 5.1E-16 106.4 6.0 72 321-398 17-93 (115)
305 2kxn_B Transformer-2 protein h 99.2 2.1E-11 7.1E-16 107.9 7.1 74 320-398 46-125 (129)
306 2e5j_A Methenyltetrahydrofolat 99.2 2.3E-11 8E-16 101.4 7.0 74 320-399 19-94 (97)
307 2ek1_A RNA-binding protein 12; 99.2 1.2E-11 4E-16 102.4 5.2 73 320-397 15-93 (95)
308 2e5g_A U6 snRNA-specific termi 99.2 2.3E-11 8E-16 100.8 6.9 73 320-398 8-81 (94)
309 2bz2_A Negative elongation fac 99.2 2.8E-11 9.5E-16 105.9 7.5 84 95-190 24-109 (121)
310 2cpy_A RNA-binding protein 12; 99.2 2.4E-11 8.2E-16 104.7 6.9 79 320-404 15-99 (114)
311 2db1_A Heterogeneous nuclear r 99.2 4.4E-11 1.5E-15 103.9 8.6 75 320-400 17-99 (118)
312 1wf1_A RNA-binding protein RAL 99.2 3E-11 1E-15 103.1 7.3 72 320-398 27-99 (110)
313 2fc9_A NCL protein; structure 99.2 6.4E-11 2.2E-15 99.3 9.2 76 319-399 14-91 (101)
314 1sjr_A Polypyrimidine tract-bi 99.2 2.7E-11 9.3E-16 111.8 7.4 73 113-190 46-122 (164)
315 2dhg_A TRNA selenocysteine ass 99.2 1.6E-11 5.5E-16 103.4 5.4 75 320-399 9-90 (104)
316 1iqt_A AUF1, heterogeneous nuc 99.2 7E-12 2.4E-16 99.2 2.9 69 322-396 1-75 (75)
317 1x4e_A RNA binding motif, sing 99.2 1.3E-11 4.5E-16 100.1 4.6 70 320-394 5-80 (85)
318 2cqd_A RNA-binding region cont 99.2 6.5E-11 2.2E-15 101.8 9.2 74 319-398 16-95 (116)
319 2dng_A Eukaryotic translation 99.2 6E-11 2.1E-15 99.9 8.6 73 320-399 15-93 (103)
320 2dgw_A Probable RNA-binding pr 99.2 4.8E-11 1.7E-15 98.1 7.8 73 320-399 10-87 (91)
321 1x4b_A Heterogeneous nuclear r 99.2 3.4E-11 1.1E-15 103.7 6.9 75 320-400 27-107 (116)
322 1rk8_A CG8781-PA, CG8781-PA pr 99.2 6.2E-11 2.1E-15 108.7 8.9 78 320-402 72-155 (165)
323 1fjc_A Nucleolin RBD2, protein 99.2 2.7E-11 9.4E-16 100.5 5.9 73 320-398 16-90 (96)
324 2e5i_A Heterogeneous nuclear r 99.2 8.8E-11 3E-15 103.6 9.3 74 320-398 25-101 (124)
325 2diu_A KIAA0430 protein; struc 99.2 5.4E-11 1.8E-15 99.7 7.4 66 114-190 10-82 (96)
326 2j76_E EIF-4B, EIF4B, eukaryot 99.2 2.4E-11 8.2E-16 102.1 5.2 73 320-399 19-98 (100)
327 1h2v_Z 20 kDa nuclear CAP bind 99.2 8.4E-11 2.9E-15 106.5 9.1 77 320-401 39-121 (156)
328 1wg5_A Heterogeneous nuclear r 99.1 4.5E-11 1.6E-15 101.2 6.7 73 320-398 15-93 (104)
329 2dnn_A RNA-binding protein 12; 99.1 9.5E-11 3.2E-15 100.9 8.4 71 321-398 17-92 (109)
330 2jwn_A Embryonic polyadenylate 99.1 4.5E-11 1.6E-15 103.9 6.4 72 321-398 37-114 (124)
331 2hgl_A HNRPF protein, heteroge 99.1 3.5E-11 1.2E-15 107.8 5.7 75 320-400 44-126 (136)
332 2ki2_A SS-DNA binding protein 99.1 9.8E-12 3.3E-16 102.0 1.7 74 322-401 3-82 (90)
333 2m2b_A RNA-binding protein 10; 99.1 3.4E-11 1.2E-15 106.3 5.2 74 319-398 22-107 (131)
334 3u1l_A PRE-mRNA-splicing facto 99.1 5.9E-11 2E-15 116.0 7.4 75 110-191 131-228 (240)
335 1wf0_A TDP-43, TAR DNA-binding 99.1 6.2E-11 2.1E-15 96.9 6.4 73 320-399 5-78 (88)
336 1wel_A RNA-binding protein 12; 99.1 3.4E-11 1.2E-15 105.1 4.8 81 320-406 25-111 (124)
337 2e5i_A Heterogeneous nuclear r 99.1 1.5E-10 5.2E-15 102.1 8.6 70 114-190 26-100 (124)
338 2fc8_A NCL protein; structure 99.1 1.3E-10 4.3E-15 97.5 7.5 78 319-401 14-94 (102)
339 2cpx_A Hypothetical protein FL 99.1 1.1E-10 3.8E-15 100.0 7.1 77 319-400 24-106 (115)
340 2bz2_A Negative elongation fac 99.1 9.5E-11 3.3E-15 102.5 6.4 75 320-401 39-113 (121)
341 3zzy_A Polypyrimidine tract-bi 99.1 3.3E-10 1.1E-14 100.7 9.9 73 320-397 28-104 (130)
342 1x5o_A RNA binding motif, sing 99.1 1.6E-10 5.4E-15 99.0 7.5 73 320-397 25-110 (114)
343 3egn_A RNA-binding protein 40; 99.1 6.3E-11 2.1E-15 105.8 5.0 79 319-402 44-133 (143)
344 2dnl_A Cytoplasmic polyadenyla 99.1 1.2E-10 4E-15 100.4 6.3 67 320-394 8-83 (114)
345 3v4m_A Splicing factor U2AF 65 99.1 3.7E-10 1.3E-14 96.5 9.1 78 112-189 4-94 (105)
346 1jmt_A Splicing factor U2AF 35 99.1 7.3E-11 2.5E-15 100.6 4.6 70 118-189 20-103 (104)
347 2xs2_A Deleted in azoospermia- 99.1 9.1E-11 3.1E-15 98.5 4.9 75 320-401 9-88 (102)
348 2lmi_A GRSF-1, G-rich sequence 99.1 6.6E-11 2.3E-15 100.7 4.1 76 320-401 11-94 (107)
349 2lcw_A RNA-binding protein FUS 98.6 1.6E-11 5.3E-16 105.9 0.0 78 320-402 7-98 (116)
350 1wez_A HnRNP H', FTP-3, hetero 99.1 8.5E-11 2.9E-15 99.6 4.5 72 320-398 15-91 (102)
351 2dha_A FLJ20171 protein; RRM d 99.1 1.1E-10 3.6E-15 102.8 5.2 74 320-399 23-105 (123)
352 2lea_A Serine/arginine-rich sp 99.1 8.6E-11 3E-15 104.6 4.6 74 320-398 47-126 (135)
353 1sjr_A Polypyrimidine tract-bi 99.1 2.4E-10 8.3E-15 105.4 7.7 74 320-398 46-123 (164)
354 3q2s_C Cleavage and polyadenyl 99.0 1.3E-10 4.5E-15 112.7 6.1 79 319-402 67-153 (229)
355 1fj7_A Nucleolin RBD1, protein 99.0 1.1E-10 3.8E-15 97.8 4.6 75 320-400 17-96 (101)
356 2dit_A HIV TAT specific factor 99.0 5.9E-10 2E-14 95.7 9.2 74 112-190 14-100 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.0 2.7E-10 9.2E-15 111.3 7.8 77 319-400 133-230 (240)
358 2f3j_A RNA and export factor b 99.0 2.5E-10 8.4E-15 106.4 6.9 77 319-400 87-168 (177)
359 2d9o_A DNAJ (HSP40) homolog, s 99.0 5.9E-10 2E-14 94.6 8.5 62 123-190 27-88 (100)
360 2hgm_A HNRPF protein, heteroge 99.0 1.6E-10 5.6E-15 102.1 4.6 73 321-399 43-121 (126)
361 3ue2_A Poly(U)-binding-splicin 99.0 7E-10 2.4E-14 96.9 8.4 79 111-189 18-106 (118)
362 2voo_A Lupus LA protein; RNA-b 99.0 4.6E-10 1.6E-14 106.0 7.4 72 321-398 110-186 (193)
363 2diu_A KIAA0430 protein; struc 99.0 4.3E-10 1.5E-14 94.2 6.2 69 322-399 11-84 (96)
364 2pe8_A Splicing factor 45; RRM 99.0 1.2E-09 4.1E-14 93.3 9.0 74 320-398 8-93 (105)
365 2hgn_A Heterogeneous nuclear r 98.9 2E-10 6.8E-15 103.2 2.4 73 321-400 47-124 (139)
366 2j8a_A Histone-lysine N-methyl 98.9 1.4E-09 4.9E-14 96.2 7.2 77 321-400 3-98 (136)
367 2dit_A HIV TAT specific factor 98.9 4.7E-09 1.6E-13 90.0 9.0 76 319-399 14-102 (112)
368 3tht_A Alkylated DNA repair pr 98.9 2.7E-09 9.3E-14 109.4 8.1 74 319-397 17-97 (345)
369 3v4m_A Splicing factor U2AF 65 98.8 7.4E-09 2.5E-13 88.3 8.1 61 332-397 27-95 (105)
370 3tht_A Alkylated DNA repair pr 98.8 4.5E-09 1.5E-13 107.8 7.8 57 112-175 17-75 (345)
371 1jmt_A Splicing factor U2AF 35 98.8 2.6E-09 8.9E-14 91.0 4.9 66 326-396 21-103 (104)
372 3s6e_A RNA-binding protein 39; 98.8 2.7E-08 9.1E-13 86.3 9.3 74 111-189 5-90 (114)
373 3ue2_A Poly(U)-binding-splicin 98.7 2.1E-08 7.2E-13 87.5 7.9 74 320-398 20-108 (118)
374 2d9o_A DNAJ (HSP40) homolog, s 98.7 3.4E-08 1.2E-12 83.7 6.9 64 329-399 26-90 (100)
375 3s6e_A RNA-binding protein 39; 98.7 3.9E-08 1.3E-12 85.3 7.2 68 332-407 29-98 (114)
376 1owx_A Lupus LA protein, SS-B, 98.6 2.2E-07 7.5E-12 81.4 10.4 71 112-189 17-93 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.3 9.4E-07 3.2E-11 73.3 7.1 56 335-398 30-85 (91)
378 2dnr_A Synaptojanin-1; RRM dom 98.3 1.7E-06 5.8E-11 71.8 7.4 69 113-190 7-84 (91)
379 3dxb_A Thioredoxin N-terminall 98.2 1.9E-06 6.4E-11 82.1 6.6 65 125-189 141-210 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 6.4E-06 2.2E-10 68.7 6.6 69 113-190 15-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.0 5.1E-06 1.7E-10 79.1 6.1 61 332-397 141-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.0 5.4E-06 1.9E-10 69.2 5.3 54 335-396 39-92 (95)
383 2l9w_A U4/U6 snRNA-associated- 98.0 1.3E-05 4.3E-10 68.5 7.6 66 326-396 27-97 (117)
384 2l9w_A U4/U6 snRNA-associated- 97.3 0.00087 3E-08 57.3 8.4 73 112-191 20-99 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.1 0.0015 5.1E-08 55.2 7.8 69 112-189 7-81 (104)
386 2dhx_A Poly (ADP-ribose) polym 96.5 0.0052 1.8E-07 51.9 6.7 67 322-396 10-81 (104)
387 1wwh_A Nucleoporin 35, nucleop 96.0 0.03 1E-06 48.5 9.2 73 111-191 22-96 (119)
388 1uw4_A UPF3X; nonsense mediate 95.9 0.019 6.4E-07 47.5 7.0 56 322-377 3-66 (91)
389 1whv_A Poly(A)-specific ribonu 95.8 0.024 8.2E-07 47.4 7.2 51 323-377 18-70 (100)
390 3pq1_A Poly(A) RNA polymerase; 95.5 0.0055 1.9E-07 64.9 2.7 62 107-175 47-108 (464)
391 1wey_A Calcipressin 1; structu 94.9 0.049 1.7E-06 46.0 6.4 72 321-397 6-82 (104)
392 1whv_A Poly(A)-specific ribonu 94.8 0.038 1.3E-06 46.2 5.4 51 115-175 18-68 (100)
393 3ctr_A Poly(A)-specific ribonu 94.7 0.022 7.5E-07 47.7 3.6 47 327-377 12-60 (101)
394 1wey_A Calcipressin 1; structu 94.5 0.099 3.4E-06 44.1 7.2 70 113-189 5-81 (104)
395 1uw4_A UPF3X; nonsense mediate 94.2 0.14 4.8E-06 42.2 7.4 67 114-183 2-69 (91)
396 3ctr_A Poly(A)-specific ribonu 94.1 0.036 1.2E-06 46.4 3.7 50 116-175 9-58 (101)
397 4eyt_A Telomerase associated p 93.8 0.64 2.2E-05 38.1 10.4 96 321-418 13-111 (129)
398 1wwh_A Nucleoporin 35, nucleop 93.7 0.18 6.3E-06 43.5 7.5 67 327-400 31-98 (119)
399 3p3d_A Nucleoporin 53; structu 93.5 0.14 4.8E-06 45.0 6.5 77 113-190 7-97 (132)
400 2l08_A Regulator of nonsense t 93.1 0.11 3.6E-06 43.4 4.8 55 322-376 11-73 (97)
401 2l08_A Regulator of nonsense t 91.4 0.43 1.5E-05 39.7 6.5 69 113-184 9-78 (97)
402 3htx_A HEN1; HEN1, small RNA m 88.1 0.27 9.3E-06 55.7 3.7 100 3-103 102-208 (950)
403 3p3d_A Nucleoporin 53; structu 83.6 0.78 2.7E-05 40.2 3.5 72 327-406 14-105 (132)
404 3pq1_A Poly(A) RNA polymerase; 81.4 0.51 1.7E-05 49.9 1.8 53 322-375 55-108 (464)
405 3d45_A Poly(A)-specific ribonu 74.8 4.8 0.00017 42.9 7.0 53 323-377 442-494 (507)
406 3d45_A Poly(A)-specific ribonu 64.7 11 0.00037 40.2 7.0 52 114-175 441-492 (507)
407 2lsl_A Telomerase associated p 60.5 2.4 8.4E-05 35.0 0.0 53 356-408 77-132 (137)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=9.7e-41 Score=317.40 Aligned_cols=178 Identities=25% Similarity=0.474 Sum_probs=157.2
Q ss_pred CHHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhc-
Q 043731 5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKS- 83 (498)
Q Consensus 5 ~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S- 83 (498)
.+++..+|++||||||||+||++|+||+++|.++ +|||||.+|++|+|||.|+. ++..|++||+.|
T Consensus 9 ~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~------------d~~~I~~Al~~S~ 75 (193)
T 2voo_A 9 MAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTT------------DFNVIVEALSKSK 75 (193)
T ss_dssp CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCC------------CHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcC------------CHHHHHHHHhhcc
Confidence 3678999999999999999999999999999864 99999999999999999974 689999999999
Q ss_pred -CcceeecCcceeecccCCcchh---hhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceE
Q 043731 84 -SSLKLSEDGMKVGRSAELPTAE---EMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTA 159 (498)
Q Consensus 84 -~~leVsedg~kVrR~~~~~~~e---e~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~a 159 (498)
..|++++++.+|||..+.|.|+ +.+.....++|||+|||+++|+++|+++|++||.|..|+|+++.. +.++|||
T Consensus 76 ~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~--~~~kG~a 153 (193)
T 2voo_A 76 AELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSI 153 (193)
T ss_dssp SCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT--CCEEEEE
T ss_pred cceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC--CCcccEE
Confidence 8999999999999996444432 233456789999999999999999999999999999999999864 7799999
Q ss_pred EEEeCCHHHHHHHHHh-CCeeCCeEEEEeecchhHHHHH
Q 043731 160 LIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKKEFEAERA 197 (498)
Q Consensus 160 FVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~d~~~~k~ 197 (498)
||+|.++++|++|+.. +..++|++|.|+++.+|..+|.
T Consensus 154 FVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~~~K~ 192 (193)
T 2voo_A 154 FVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKN 192 (193)
T ss_dssp EEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-----
T ss_pred EEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHHHHhc
Confidence 9999999999999986 7799999999999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4.6e-29 Score=248.58 Aligned_cols=213 Identities=11% Similarity=0.092 Sum_probs=175.9
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||+|..|+|+++.. + .+|+|||+|.++++|.+|++. +..++|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 45689999999999999999999999999999999998764 2 479999999999999999974 7788888887644
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
..
T Consensus 115 ~~------------------------------------------------------------------------------ 116 (292)
T 2ghp_A 115 LT------------------------------------------------------------------------------ 116 (292)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 20
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCC-ce
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFG-TV 347 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG-~V 347 (498)
...+||+|||..+++++|+++|++|| .|
T Consensus 117 ---------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i 145 (292)
T 2ghp_A 117 ---------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVA 145 (292)
T ss_dssp ---------------------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred ---------------------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCe
Confidence 12469999999999999999999999 99
Q ss_pred EEEEeec-----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHHHhhhhhccccccccc
Q 043731 348 KFIDFKI-----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEE 422 (498)
Q Consensus 348 ~~V~~~~-----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~~ 422 (498)
..|.+.+ ..+.|||+|.++++|.+|++.++ |..|.|+.|.|..+........- .........+++
T Consensus 146 ~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~~~~-----~~~~~~~~~l~v 215 (292)
T 2ghp_A 146 LSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLN-----GLKIEGYTLVTKVSNPLEKSKRT-----DSATLEGREIMI 215 (292)
T ss_dssp CEEECC-------CCEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCCC--------------CCTTTEEEE
T ss_pred EEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCcccccc-----cccCCCCceEEE
Confidence 9999875 45679999999999999999884 89999999999998765433211 123345678999
Q ss_pred hhhhhh-hhhhhhhhhcccCCCccceeeeeccCC--CCCCCccccc
Q 043731 423 KHLEAE-NKAASEKMIQQEDAQIKPGKFEQHEKP--GISSGTSFVR 465 (498)
Q Consensus 423 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 465 (498)
.||... ...+.++++|+.+|.|.++++ ++|+. |.++|+|||.
T Consensus 216 ~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~tg~~~g~afV~ 260 (292)
T 2ghp_A 216 RNLSTELLDENLLRESFEGFGSIEKINI-PAGQKEHSFNNCCAFMV 260 (292)
T ss_dssp EEECTTTCCHHHHHHHHGGGSCEEEEEC-CSCCC---CCCEEEEEE
T ss_pred ECCCcccCCHHHHHHHHhccCCeeEEEE-EecCCcCCCCceEEEEE
Confidence 999999 999999999999999999998 77877 9999999996
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.4e-28 Score=241.38 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=176.7
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++|| |..+.+ +.++|+|||+|.++++|.+|+.. +..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE
Confidence 35678999999999999999999999999 999987 23579999999999999999974 778899888865
Q ss_pred ecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCC
Q 043731 188 PKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDS 267 (498)
Q Consensus 188 ~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~ 267 (498)
+..
T Consensus 91 ~~~----------------------------------------------------------------------------- 93 (284)
T 3smz_A 91 LQP----------------------------------------------------------------------------- 93 (284)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 421
Q ss_pred CchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCce
Q 043731 268 SDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTV 347 (498)
Q Consensus 268 ~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V 347 (498)
...++||+|||..+++++|+++|++||.|
T Consensus 94 ---------------------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i 122 (284)
T 3smz_A 94 ---------------------------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSL 122 (284)
T ss_dssp ---------------------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ---------------------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCe
Confidence 01147999999999999999999999999
Q ss_pred EEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHHHhhhhhcccccccc
Q 043731 348 KFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGE 421 (498)
Q Consensus 348 ~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~ 421 (498)
..|.+.++. +.|||+|.++++|.+|++.+. |..|+|+.|.|..+..... ........++|
T Consensus 123 ~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~i~v~~a~~~~~---------~~~~~~~~~l~ 188 (284)
T 3smz_A 123 ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-----GKPLGPRTLYVHWTDAGQL---------TPALLHSRCLC 188 (284)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCGGGC---------CTTTTSCSEEE
T ss_pred eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCCC---------CcccCCccEEE
Confidence 999887543 459999999999999998884 8999999999999876432 23335678899
Q ss_pred chhhhhhh-hhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 422 EKHLEAEN-KAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 422 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
+.||...+ +.+.++++|+.+|.|.++++ ++|+.|.++|+|||.
T Consensus 189 v~nlp~~~~~~~~l~~~f~~~G~i~~v~i-~~~~~g~~~g~afV~ 232 (284)
T 3smz_A 189 VDRLPPGFNDVDALCRALSAVHSPTFCQL-ACGQDGQLKGFAVLE 232 (284)
T ss_dssp EECCCTTCCCHHHHHHHTCSSSCCSEEEE-EECSSCCEEEEEEEE
T ss_pred EecCCcccCCHHHHHHHhhCCCCeEEEEE-EECCCCCcccEEEEE
Confidence 99999996 88999999999999999998 888899999999996
No 4
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.96 E-value=1.4e-29 Score=212.00 Aligned_cols=89 Identities=43% Similarity=0.690 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHh
Q 043731 2 ASLDEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLR 81 (498)
Q Consensus 2 ~~~~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk 81 (498)
.++++++..+|++||||||||+||++|+||+++|.++++|||||++|++|+|||+++. +++.|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~------------d~~~i~~al~ 71 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTT------------DVKEVVEAIR 71 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCS------------CHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcC------------CHHHHHHHHh
Confidence 3799999999999999999999999999999999888999999999999999999984 7899999999
Q ss_pred hcCcceeecCcceeecccCCc
Q 043731 82 KSSSLKLSEDGMKVGRSAELP 102 (498)
Q Consensus 82 ~S~~leVsedg~kVrR~~~~~ 102 (498)
.|+.|+|++||++|||+.|+|
T Consensus 72 ~S~~lev~edg~~VRR~~PlP 92 (92)
T 1s29_A 72 PSEKLVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp TCSSEEECTTSSEEEESSCCC
T ss_pred hCCeEEEeCCCCEEeCCCCCC
Confidence 999999999999999999886
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=1.3e-26 Score=221.80 Aligned_cols=168 Identities=18% Similarity=0.208 Sum_probs=141.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...+||||+|||+++|+++|+++|++||+|.+|+|+++.. +++++|||||+|.+.++|.+|+.. +..+.|+.|.+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI-TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC-CCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3468999999999999999999999999999999999876 678999999999999999999985 7788898887655
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
......
T Consensus 92 ~~~~~~-------------------------------------------------------------------------- 97 (213)
T 4f02_A 92 SQRDPS-------------------------------------------------------------------------- 97 (213)
T ss_dssp CCCCTH--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 421000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
.. .....++||+|||..+|+++|+++|++||.|.
T Consensus 98 ---------~~-------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 131 (213)
T 4f02_A 98 ---------LR-------------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131 (213)
T ss_dssp ---------HH-------------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred ---------cc-------------------------------------ccccccceECCcccccHHHHHHHHHhhcCCeE
Confidence 00 00012579999999999999999999999999
Q ss_pred EEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHH
Q 043731 349 FIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEY 404 (498)
Q Consensus 349 ~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~ 404 (498)
.|.+.++ ++.|||+|.++++|.+|++.|+ |..|+|+.|.|..+..+.+++.
T Consensus 132 ~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln-----g~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 132 SCKVVCDENGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp EEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCCHHHHHH
T ss_pred EEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEcCCCcccch
Confidence 9998764 3469999999999999999984 9999999999999998877654
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=4.1e-26 Score=212.95 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=137.5
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|.+|+.. +..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-CCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34679999999999999999999999999999999998875 577999999999999999999996 7889999999876
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
...... . . ..+
T Consensus 89 ~~~~~~-----------------~--------------------------~-----~~~--------------------- 99 (196)
T 1l3k_A 89 AVSRED-----------------S--------------------------Q-----RPG--------------------- 99 (196)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccCccc-----------------c--------------------------c-----ccc---------------------
Confidence 531100 0 0 000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
.......+||+|||..+++++|+++|++||.|.
T Consensus 100 -----------------------------------------------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 100 -----------------------------------------------AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp --------------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred -----------------------------------------------cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 000123689999999999999999999999999
Q ss_pred EEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHH
Q 043731 349 FIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKE 403 (498)
Q Consensus 349 ~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e 403 (498)
.|.+.++. +.|||+|.++++|.+|++. + |..|+|+.|.|..+..+++..
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~----~--~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ----K--YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC----S--CCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh----C--CcEECCEEEEEEecCChhHhc
Confidence 99998753 4599999999999999874 3 899999999999998877653
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-25 Score=203.02 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=133.1
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecch
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKE 191 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d 191 (498)
|+|||+|||.++|+++|+++|++||.|.+|+++++.. +.++|+|||+|.+.++|.+|+.. +..+.|+.|.|.+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN--NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC--CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 7999999999999999999999999999999998864 55899999999999999999974 7889999988766421
Q ss_pred hHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchh
Q 043731 192 FEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNA 271 (498)
Q Consensus 192 ~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~ 271 (498)
.. .
T Consensus 79 ~~---------------------------------------------------~-------------------------- 81 (166)
T 3md3_A 79 SQ---------------------------------------------------Q-------------------------- 81 (166)
T ss_dssp CC---------------------------------------------------C--------------------------
T ss_pred CC---------------------------------------------------C--------------------------
Confidence 00 0
Q ss_pred hhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEE
Q 043731 272 AAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFID 351 (498)
Q Consensus 272 ~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~ 351 (498)
........+||+|||..+++++|+++|++||.|..+.
T Consensus 82 -------------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 82 -------------------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp -------------------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred -------------------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 0000123689999999999999999999999999999
Q ss_pred eecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 352 FKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 352 ~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
+.++ .+.|||+|.++++|.+|+..++ |..|+|+.|.|..+.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CCccCCcEEEEEecC
Confidence 9865 3459999999999999999884 899999999998864
No 8
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.93 E-value=2.1e-27 Score=201.63 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=81.3
Q ss_pred CHHHHHHHHhcchhhccCCCCCcChHHHhhhCCCCCCceehHHHhcchhhHhhhccCCCCCCCCCcccHHHHHHHHhhcC
Q 043731 5 DEETAQAVLRQVEFYFSDSNIPTDEFLRGKISESSDAMVSLALICSFKRMKEHLHLGNVKSEDIPEDTLEAVAETLRKSS 84 (498)
Q Consensus 5 ~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~~~~~~~g~V~l~~i~~F~r~k~l~~~~~~~~~~v~~~~~~~V~eALk~S~ 84 (498)
++++.++|++||||||||+||++|.||+++|+ ++|||||++|++|+|||+|+. +++.|++||+.|+
T Consensus 11 ~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md--~~G~Vpl~~iasF~r~k~lt~------------d~~~i~~al~~S~ 76 (101)
T 2cqk_A 11 TEDLKECLKKQLEFCFSRENLSKDLYLISQMD--SDQFIPIWTVANMEEIKKLTT------------DPDLILEVLRSSP 76 (101)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSC--TTSCEEHHHHHHCHHHHHHCC------------CHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcchhhhccCHHHHHhhh--cCCCEEhHHHhCChHHHHHcC------------CHHHHHHHHHhCC
Confidence 46779999999999999999999999999996 899999999999999999984 7899999999999
Q ss_pred cceeecCcceeecccCCcchh
Q 043731 85 SLKLSEDGMKVGRSAELPTAE 105 (498)
Q Consensus 85 ~leVsedg~kVrR~~~~~~~e 105 (498)
.|+|++||++|||+.+.+.++
T Consensus 77 ~levsedg~kVRr~~~~~i~~ 97 (101)
T 2cqk_A 77 MVQVDEKGEKVRPSHKRCISG 97 (101)
T ss_dssp SEEECSSSSEEEECCSCCCCS
T ss_pred cEEEcCCCCeeeeCCCCCcCC
Confidence 999999999999998877654
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=3.7e-26 Score=207.91 Aligned_cols=159 Identities=12% Similarity=0.213 Sum_probs=135.8
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecch
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKKE 191 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~d 191 (498)
+.++|||+|||+++|+++|+++|++||.|.+|+|+++.. ++.++|||||+|.++++|.+|+.....++|+.|.+.+...
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA-TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT-TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC-CCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 468999999999999999999999999999999999875 5779999999999999999999987789998887544321
Q ss_pred hHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchh
Q 043731 192 FEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNA 271 (498)
Q Consensus 192 ~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~ 271 (498)
...
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (167)
T 2cjk_A 81 RDE----------------------------------------------------------------------------- 83 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEEE
Q 043731 272 AAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFID 351 (498)
Q Consensus 272 ~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~ 351 (498)
......+||+|||..+++++|+++|++||.|..|.
T Consensus 84 ---------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~ 118 (167)
T 2cjk_A 84 ---------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ 118 (167)
T ss_dssp ---------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEE
T ss_pred ---------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEE
Confidence 00122579999999999999999999999999999
Q ss_pred eecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 352 FKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 352 ~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
+.++. +.|||+|.++++|.+|++ + + |..|+|+.|.|..+..+
T Consensus 119 i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~---~--~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 119 LMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N---K--FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCCSSSSSTTSEEEEEEESSHHHHHHHHH-C---S--EECSSSSCEEEEECCCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHh-C---C--CEEeCCeEEEEeecCCC
Confidence 88653 579999999999999987 4 4 99999999999998754
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=3.1e-25 Score=201.68 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=134.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++|+++|+++|++||.|..|+++++.. ++.++|+|||+|.++++|.+|+.. +..++|+.|.|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK-TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC-CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 358999999999999999999999999999999998875 577999999999999999999984 88899999987664
Q ss_pred chhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCc
Q 043731 190 KEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSD 269 (498)
Q Consensus 190 ~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~ 269 (498)
... . .
T Consensus 81 ~~~-------------------~--------------------------~------------------------------ 85 (168)
T 1b7f_A 81 RPG-------------------G--------------------------E------------------------------ 85 (168)
T ss_dssp CCC-------------------S--------------------------S------------------------------
T ss_pred CCC-------------------c--------------------------c------------------------------
Confidence 200 0 0
Q ss_pred hhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEE
Q 043731 270 NAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKF 349 (498)
Q Consensus 270 ~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~ 349 (498)
......+||+|||..+++++|+++|++||.|..
T Consensus 86 -----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 86 -----------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp -----------------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred -----------------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 001225799999999999999999999999999
Q ss_pred EEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEc
Q 043731 350 IDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPV 396 (498)
Q Consensus 350 V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~ 396 (498)
+.+.++. +.|||+|.++++|.+|+..|+ |..+.| +.|.|..+
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-----NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCEecCCCeEEEEEeC
Confidence 9998765 569999999999999999984 888877 88888754
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=3.3e-25 Score=209.86 Aligned_cols=172 Identities=15% Similarity=0.216 Sum_probs=137.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|++. +..++|+.|.|.+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV-TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C-C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 4578999999999999999999999999999999998875 567899999999999999999984 7889999998855
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
............
T Consensus 105 ~~~~~~~~~~~~-------------------------------------------------------------------- 116 (216)
T 2qfj_A 105 PSNIGQAQPIID-------------------------------------------------------------------- 116 (216)
T ss_dssp CSCCGGGHHHHH--------------------------------------------------------------------
T ss_pred CCCccccchhhh--------------------------------------------------------------------
Confidence 432110000000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
... ........+||+|||..+++++|+++|++||.|.
T Consensus 117 -------~~~------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 153 (216)
T 2qfj_A 117 -------QLA------------------------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 153 (216)
T ss_dssp -------HHH------------------------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE
T ss_pred -------hhh------------------------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee
Confidence 000 0001123689999999999999999999999999
Q ss_pred EEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 349 FIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 349 ~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
.|.+.++ .+.|||+|.+.++|.+|++.|+ |..|+|+.|.|..+...
T Consensus 154 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-----g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-----LFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBCSSSBCEEEECSSC
T ss_pred EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc-----CCEeCCcEEEEEEecCC
Confidence 9999876 4569999999999999999984 89999999999987653
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=1e-24 Score=197.41 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=131.2
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.++|||+|||+++|+++|+++|++||.|..|+++++.. ++.++|+|||+|.++++|.+|+.. +..++|++|.|.+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 58999999999999999999999999999999998874 577999999999999999999984 888999999876542
Q ss_pred hhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCch
Q 043731 191 EFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDN 270 (498)
Q Consensus 191 d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~ 270 (498)
... .
T Consensus 81 ~~~---------------------------------------------~------------------------------- 84 (167)
T 1fxl_A 81 PSS---------------------------------------------A------------------------------- 84 (167)
T ss_dssp CCC---------------------------------------------G-------------------------------
T ss_pred CCc---------------------------------------------c-------------------------------
Confidence 000 0
Q ss_pred hhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceEEE
Q 043731 271 AAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVKFI 350 (498)
Q Consensus 271 ~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V 350 (498)
......+||+|||..+++++|+++|++||.|..+
T Consensus 85 ----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 85 ----------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp ----------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred ----------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 0001257999999999999999999999999999
Q ss_pred EeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE--EEEEE
Q 043731 351 DFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI--AVLEP 395 (498)
Q Consensus 351 ~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~--~~v~~ 395 (498)
.+.++. +.|||+|.++++|.+|+..|+ |..+.|+. |.|..
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGATEPITVKF 166 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEE
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-----CCccCCCccceEEEe
Confidence 988653 569999999999999999984 88999975 56553
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=1.7e-24 Score=197.73 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=123.9
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCC--cccceEEEEeCCHHHHHHHHHh--CCeeC---CeEE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKR--LFCGTALIEFSTEEDAEKVLKQ--GLFYA---GVEL 184 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~--~~kG~aFVeF~s~e~A~kAl~~--~~~~~---G~~l 184 (498)
+.++|||+|||+++|+++|+++|++||+|.+|+|+++.. ++ .++|||||+|.++++|.+|++. +..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS-QNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS-SSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 468999999999999999999999999999999998875 43 7899999999999999999984 22222 1222
Q ss_pred EEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCC
Q 043731 185 HLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGE 264 (498)
Q Consensus 185 ~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~ 264 (498)
.+.+.. . . .
T Consensus 81 ~~~~~~------------------------------------------------~-----~-~----------------- 89 (175)
T 3nmr_A 81 QMKPAD------------------------------------------------S-----E-K----------------- 89 (175)
T ss_dssp EEEECG------------------------------------------------G-----G-C-----------------
T ss_pred EEcccc------------------------------------------------c-----c-c-----------------
Confidence 211110 0 0 0
Q ss_pred CCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccC
Q 043731 265 PDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKF 344 (498)
Q Consensus 265 ~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~f 344 (498)
........+||+|||..+|+++|+++|++|
T Consensus 90 --------------------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 90 --------------------------------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSF 119 (175)
T ss_dssp --------------------------------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred --------------------------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhC
Confidence 000012368999999999999999999999
Q ss_pred CceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEec---CeEEEEEEc
Q 043731 345 GTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVK---NFIAVLEPV 396 (498)
Q Consensus 345 G~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~---g~~~~v~~~ 396 (498)
|.|..|.+.++ .+.|||+|.++++|.+|+.+|+ |..+. |+.|.|..+
T Consensus 120 G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 120 GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH-----QAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TSCCCTTCSSCCEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc-----CCcccCCCCCCeEEEec
Confidence 99999999876 4459999999999999999984 55444 489988875
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.90 E-value=6.2e-24 Score=195.14 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=132.1
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||.|..+.+. +.. ++.++|||||+|.++++|.+|++. +..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~~-~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVR-TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EEE-EETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-ECC-CCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3567999999999999999999999999998884333 332 467899999999999999999974 7889999998766
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
..... . .
T Consensus 88 ~~~~~----------------------~----------------------~----------------------------- 94 (175)
T 1fje_B 88 PKGRD----------------------S----------------------K----------------------------- 94 (175)
T ss_dssp CCCSS----------------------C----------------------S-----------------------------
T ss_pred CCCcc----------------------c----------------------c-----------------------------
Confidence 42100 0 0
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCceE
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTVK 348 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V~ 348 (498)
.......+||+|||..+++++|+++|++||.|.
T Consensus 95 -----------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 95 -----------------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp -----------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred -----------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 000123689999999999999999999999999
Q ss_pred EEEee--cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 349 FIDFK--IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 349 ~V~~~--~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
.+ .. +..+.|||+|.++++|.+|+..|+ |..|+|+.|.|..+..+
T Consensus 128 ~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EE-CSSSSCCSEEEEECSSHHHHHHHHHHHT-----EEEETTEEEEEEECSSC
T ss_pred Ee-cCCCCCceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEecCCC
Confidence 88 22 345679999999999999999984 89999999999988654
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=5.2e-23 Score=203.96 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=154.6
Q ss_pred ccHHHHHHHHhhcCcceeecCcceeecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccC
Q 043731 71 DTLEAVAETLRKSSSLKLSEDGMKVGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVA 150 (498)
Q Consensus 71 ~~~~~V~eALk~S~~leVsedg~kVrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~ 150 (498)
.+.+....|+..-....+. |..++-.. ....++|||+|||+++|+++|+++|++||.|..|+++++..
T Consensus 65 ~~~~~A~~A~~~l~~~~~~--g~~i~v~~----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLR--ERELSVQL----------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp SSHHHHHHHHHHHTTCEET--TEECEEEE----------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCHHHHHHHHHHcCCCeeC--CeEEEEEe----------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 4566777777654433343 33322111 12357999999999999999999999999999999988765
Q ss_pred CCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCc
Q 043731 151 DKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGL 228 (498)
Q Consensus 151 ~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~ 228 (498)
++.++|+|||+|.+.++|.+|+.. +..++|+.|.|.+..... . .
T Consensus 133 -~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~------------------~---~------------ 178 (284)
T 3smz_A 133 -TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ------------------L---T------------ 178 (284)
T ss_dssp -TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG------------------C---C------------
T ss_pred -CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC------------------C---C------------
Confidence 577999999999999999999974 888999999987653100 0 0
Q ss_pred EEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCC
Q 043731 229 IVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDG 308 (498)
Q Consensus 229 iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g 308 (498)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCcceeeeccCCCccc-cHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccC
Q 043731 309 SIEKGEEKEGKTSIDTYKDNMDVV-MREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEG 382 (498)
Q Consensus 309 ~~~~~~~~~~~~~~vfv~nL~~~v-t~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~ 382 (498)
.......++||+|||..+ ++++|+++|++||.|..|.+.++ .+.|||+|.++++|.+|+..|+
T Consensus 179 ------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----- 247 (284)
T 3smz_A 179 ------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQAD----- 247 (284)
T ss_dssp ------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHT-----
T ss_pred ------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhC-----
Confidence 000012368999999995 99999999999999999998875 5569999999999999999984
Q ss_pred CeEecCeEEEEEEcCChhHHH
Q 043731 383 GLSVKNFIAVLEPVTGEAEKE 403 (498)
Q Consensus 383 g~~i~g~~~~v~~~~g~~E~e 403 (498)
|..|+|+.|.|..+..+.++.
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999998777654
No 16
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.90 E-value=2.6e-23 Score=189.89 Aligned_cols=152 Identities=13% Similarity=0.272 Sum_probs=126.4
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccC----C-------ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQH----V-------KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFY 179 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~----G-------~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~ 179 (498)
+.++|||+|||+++|+++|+++|++| | .|..+++.+ .+|+|||+|.++++|.+|+.. +..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 46899999999999999999999999 5 566665533 479999999999999999953 7889
Q ss_pred CCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCC
Q 043731 180 AGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENAC 259 (498)
Q Consensus 180 ~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~ 259 (498)
+|+.|.|.+...+..
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999988755321000
Q ss_pred CCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHH
Q 043731 260 KPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKS 339 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke 339 (498)
......+||+|||..+++++|++
T Consensus 91 ---------------------------------------------------------~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 91 ---------------------------------------------------------LPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp ---------------------------------------------------------CTTTTCEEEECCCTTCCHHHHHH
T ss_pred ---------------------------------------------------------CCCCCEEEEEcCCCcCCHHHHHH
Confidence 00022579999999999999999
Q ss_pred HhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 340 VFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 340 ~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
+|++||.|..|.+.++. +.|||+|.++++|.+|++.|+ |..|+|+.|.|..+.
T Consensus 114 ~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-----TCEETTEECEEEECC
T ss_pred HHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CCEECCeEEEEEeCC
Confidence 99999999999998763 569999999999999999884 899999999998763
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=5.5e-23 Score=203.57 Aligned_cols=258 Identities=14% Similarity=0.105 Sum_probs=140.6
Q ss_pred cccceEEeccCCCCCcHHHHH----HHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEE
Q 043731 111 LDVRTIAATPLEYDVKREDVE----AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVEL 184 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~----~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l 184 (498)
...++|||+|||+++|+++|+ ++|++||.|..|+|+++ ++++|||||+|.+.++|.+|++. +..+.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS----LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC----CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 457999999999999999977 89999999999999873 55899999999999999999974 888999999
Q ss_pred EEeecchhHHH---HHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCC
Q 043731 185 HLKPKKEFEAE---RAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKP 261 (498)
Q Consensus 185 ~v~~k~d~~~~---k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~ 261 (498)
.|.+....... +........+... ..+..............+..... .... ..+........+ ...+
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~-~~~~ 152 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKRE-KRKPKSQETPATKKAVQGGGATP-----VVGA---VQGPVPGMPPMT-QAPR 152 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhh-hhhccccchhhhhhhccCcCCcc-----cCCC---CCCCCCCCCccc-cccc
Confidence 99886432211 0000000000000 00000000000000000000000 0000 000000000000 0000
Q ss_pred CCCCCCCchhhhHHhhhhhcccCCCCCCccccccc--cccc-cCCCCCCCccc--ccccccCcceeeeccCCCccccHHH
Q 043731 262 DGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNE--LDSE-DGDKSSDGSIE--KGEEKEGKTSIDTYKDNMDVVMRED 336 (498)
Q Consensus 262 ~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~--~~~E-~~~~~~~g~~~--~~~~~~~~~~~vfv~nL~~~vt~Ed 336 (498)
...+... ...--..+-.. .-.+.... .... .......+.+. ........+.+|||+|||..+++++
T Consensus 153 ~~~~~~g-----~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 223 (282)
T 3pgw_A 153 IMHHMPG-----QPPYMPPPGMI----PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELM 223 (282)
T ss_pred ccccCCC-----CCCCCCCCCCC----CCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHH
Confidence 0000000 00000000000 00000000 0000 00000000000 0001112345799999999999999
Q ss_pred HHHHhccCCceEEEEeecCC-ceEEEEeCCHHHHHHHHHHHhhcccCCeEec-CeEEEEEEc
Q 043731 337 LKSVFHKFGTVKFIDFKIGA-ESGYIRFEEPEGAQKARAAAVLAQEGGLSVK-NFIAVLEPV 396 (498)
Q Consensus 337 Lke~F~~fG~V~~V~~~~g~-~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~-g~~~~v~~~ 396 (498)
|+++|++||.|..|.+.+++ +.|||+|.+.++|.+|+..|+ |..|. |+.|.|..+
T Consensus 224 l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 224 LSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ-----GFKITQNNAMKISFA 280 (282)
T ss_pred HHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcC-----CcEeCCCCEEEEEEe
Confidence 99999999999999999877 789999999999999999984 89999 999999875
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.89 E-value=1.2e-22 Score=189.76 Aligned_cols=174 Identities=12% Similarity=0.224 Sum_probs=130.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCc-----------eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVK-----------VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFY 179 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~-----------V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~ 179 (498)
..|+|||+|||+++|+++|+++|++||. |..+.+ +.++|||||+|.++++|.+|+.. +..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 4699999999999999999999999954 444443 34579999999999999999963 7889
Q ss_pred CCeEEEEeecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCC
Q 043731 180 AGVELHLKPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENAC 259 (498)
Q Consensus 180 ~G~~l~v~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~ 259 (498)
+|+.|.|.+...+.. .. .. .. ....
T Consensus 76 ~g~~i~v~~~~~~~~----------------~~---~~--------------------~~-----~~~~----------- 100 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP----------------LP---GM--------------------SE-----NPSV----------- 100 (198)
T ss_dssp TTEEEEEECCCCCCC----------------CC---CS--------------------SS-----CSSC-----------
T ss_pred cCceEEEeCCCCCCC----------------CC---CC--------------------cC-----CCcC-----------
Confidence 999999876532110 00 00 00 0000
Q ss_pred CCCCCCCCCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHH
Q 043731 260 KPDGEPDSSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKS 339 (498)
Q Consensus 260 ~~~~~~~~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke 339 (498)
..+. . ...........+||+|||..+++++|++
T Consensus 101 ---~~~~--------------------------~------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 133 (198)
T 2yh0_A 101 ---YVPG--------------------------V------------------VSTVVPDSAHKLFIGGLPNYLNDDQVKE 133 (198)
T ss_dssp ---CCTT--------------------------S------------------SCCCSSCCCCEEEEECCCTTCCHHHHHH
T ss_pred ---CCCC--------------------------C------------------ccCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0000 0 0000011234789999999999999999
Q ss_pred HhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 340 VFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 340 ~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
+|++||.|..|.+.++ .+.|||+|.++++|.+|++.|+ |..|+|+.|.|..+...
T Consensus 134 ~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 134 LLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRASVG 194 (198)
T ss_dssp HHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT-----TCEETTEECEEEESCCC
T ss_pred HHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEECCCC
Confidence 9999999999999876 3569999999999999999884 89999999999988653
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.89 E-value=3.3e-22 Score=193.26 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=137.7
Q ss_pred ccccceEEeccCCC-CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 110 QLDVRTIAATPLEY-DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 110 ~~~~rtV~V~nLp~-~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
....++|||+|||+ ++++++|+++|++||.|..|+|+++. +|||||+|.++++|.+|++. +..+.|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35679999999999 99999999999999999999998863 69999999999999999983 88899999999
Q ss_pred eecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCC
Q 043731 187 KPKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPD 266 (498)
Q Consensus 187 ~~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~ 266 (498)
.+....... . .+ .... ..+..-.+ .. ........
T Consensus 105 ~~a~~~~~~------------~--~~---~~~~-----~~~~~~~~-----~~-------------------~~~~~~~~ 138 (229)
T 2adc_A 105 TLSKHQNVQ------------L--PR---EGQE-----DQGLTKDY-----GN-------------------SPLHRFKK 138 (229)
T ss_dssp ECCSCCCCC------------C--CC---SSSS-----TTTTEEEC-----TT-------------------CSSCCCCS
T ss_pred EEecCcccc------------C--cc---cccc-----cccccccc-----cc-------------------CcccccCC
Confidence 876421100 0 00 0000 00000000 00 00000000
Q ss_pred CCchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCC-
Q 043731 267 SSDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFG- 345 (498)
Q Consensus 267 ~~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG- 345 (498)
. .. .........+.++||+|||..+++++|+++|++||
T Consensus 139 ~------------------------~~-----------------~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 139 P------------------------GS-----------------KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp T------------------------TS-----------------GGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred c------------------------cc-----------------cccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 0 00 00000112345799999999999999999999999
Q ss_pred ceEEEEe-ecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEec-CeEEEEEEcC
Q 043731 346 TVKFIDF-KIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVK-NFIAVLEPVT 397 (498)
Q Consensus 346 ~V~~V~~-~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~-g~~~~v~~~~ 397 (498)
.|..|.+ .++++.|||+|.++++|.+|+..|+ |..|+ |+.|.|..+.
T Consensus 178 ~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 178 VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSK 226 (229)
T ss_dssp CEEEEEECSSSTTCEEEEESSHHHHHHHHHHHT-----TCBSSSSCBCEEEECS
T ss_pred CeeEEEEEECCCcEEEEEECCHHHHHHHHHHHC-----CCccCCCCeEEEEEec
Confidence 9999999 4478899999999999999999984 88899 9999998764
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=1.2e-22 Score=194.24 Aligned_cols=188 Identities=13% Similarity=0.174 Sum_probs=130.5
Q ss_pred ccceEEeccCC-CCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLE-YDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp-~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
+.++|||+||| +.+|+++|+++|++||.|.+|+|+++ .+|||||+|.++++|++|++. +..+.|++|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999999999999999875 269999999999999999984 8999999999987
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
++.-.. .+ .. ....+.+... .+ . ..+ +......
T Consensus 77 s~~~~~------------~p---------~~-~~~~~~~~~~-~~-----~-----~~~-----------~~~~r~~--- 109 (205)
T 3tyt_A 77 SKQPAI------------MP---------GQ-SYGLEDGSCS-YK-----D-----FSE-----------SRNNRFS--- 109 (205)
T ss_dssp CSCSCC------------CC---------CS-CCBCTTSCBS-EE-----E-----CTT-----------CTTCSCS---
T ss_pred ccCCcc------------CC---------Cc-ccccccCCcc-cc-----c-----cCC-----------Ccccccc---
Confidence 631000 00 00 0000000000 00 0 000 0000000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCce-
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTV- 347 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V- 347 (498)
..+. .. ......++.++||+|||+.+|+++|+++|++||.|
T Consensus 110 ---------------------~~~~------~~-----------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 110 ---------------------TPEQ------AA-----------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp ---------------------SHHH------HT-----------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred ---------------------Cccc------cc-----------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 0000 00 00001234579999999999999999999999998
Q ss_pred -EEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe----EEEEEE
Q 043731 348 -KFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF----IAVLEP 395 (498)
Q Consensus 348 -~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~----~~~v~~ 395 (498)
..|.+.++ .+.|||+|.+.++|.+|+..|+ |..|.|+ +++|+.
T Consensus 152 ~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ln-----g~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 152 PTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLN-----HYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHT-----TCEECCSSSSSCEECEE
T ss_pred eEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhC-----CCCccCCCCCcceEEEe
Confidence 88888765 3579999999999999999984 8889887 466654
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=2.5e-22 Score=188.48 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=135.6
Q ss_pred ccceEEeccCCC-CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEY-DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~-~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+ ++++++|+++|++||.|..|+|+++. +|||||+|.++++|.+|+.. +..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 468999999999 99999999999999999999998863 69999999999999999983 8889999999987
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
....... .+ + .... ..+..-.. . ... . .....
T Consensus 76 a~~~~~~-----------~~---~---~~~~-----~~~~~~~~-----~---------~~~-~---------~r~~~-- 107 (198)
T 1qm9_A 76 SKHQNVQ-----------LP---R---EGQE-----DQGLTKDY-----G---------NSP-L---------HRFKK-- 107 (198)
T ss_dssp CCCCSCC-----------CS---S---SSSS-----SSSCEEES-----S---------CCC-T---------TSSSS--
T ss_pred ecCCCcC-----------CC---C---cCCc-----cccccccc-----c---------CCc-h---------hhccC--
Confidence 6421100 00 0 0000 00000000 0 000 0 00000
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCC-ce
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFG-TV 347 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG-~V 347 (498)
+ ... ........+.++||+|||..+++++|+++|++|| .|
T Consensus 108 ------------~-------------------~~~--------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 108 ------------P-------------------GSK--------NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp ------------C-------------------CCC--------CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred ------------c-------------------ccc--------ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 0 000 0000112345789999999999999999999999 99
Q ss_pred EEEEeec-CCceEEEEeCCHHHHHHHHHHHhhcccCCeEec-CeEEEEEEcC
Q 043731 348 KFIDFKI-GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVK-NFIAVLEPVT 397 (498)
Q Consensus 348 ~~V~~~~-g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~-g~~~~v~~~~ 397 (498)
..|.+.+ +++.|||+|.++++|.+|+..++ |..++ |+.|.|..+.
T Consensus 149 ~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 149 KGFKFFQKDRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEESSTTSSCEEEECSSHHHHHHHHHHHT-----SSCCSSCCSCCEEEEC
T ss_pred eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhc-----CCccCCCCeEEEEeec
Confidence 9999854 77889999999999999999984 88899 9999888764
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=6.1e-22 Score=197.03 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=131.8
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCC-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+++|+++|+++|++|| .|..|+|+++.. +.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 468999999999999999999999999 999999998864 56899999999999999999994 8889999999876
Q ss_pred cchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCCC
Q 043731 189 KKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDSS 268 (498)
Q Consensus 189 k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~~ 268 (498)
...... . ... .
T Consensus 194 a~~~~~-----------------~---~~~--------------------~----------------------------- 204 (292)
T 2ghp_A 194 SNPLEK-----------------S---KRT--------------------D----------------------------- 204 (292)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCCcc-----------------c---ccc--------------------c-----------------------------
Confidence 531000 0 000 0
Q ss_pred chhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCcc-ccHHHHHHHhccCCce
Q 043731 269 DNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDV-VMREDLKSVFHKFGTV 347 (498)
Q Consensus 269 ~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~-vt~EdLke~F~~fG~V 347 (498)
........+||+|||.. +++++|+++|++||.|
T Consensus 205 ----------------------------------------------~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v 238 (292)
T 2ghp_A 205 ----------------------------------------------SATLEGREIMIRNLSTELLDENLLRESFEGFGSI 238 (292)
T ss_dssp ------------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCE
T ss_pred ----------------------------------------------ccCCCCceEEEECCCcccCCHHHHHHHHhccCCe
Confidence 00011236899999999 9999999999999999
Q ss_pred EEEEeecCC-------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 348 KFIDFKIGA-------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 348 ~~V~~~~g~-------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..|.+.++. +.|||+|.++++|.+|+ .+ | |..|+|+.|.|..+..+
T Consensus 239 ~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l---~--g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 239 EKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM---N--RSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG---T--TEEETTEEEEEEECCCC
T ss_pred eEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh---c--CCEECCcEEEEEEecCC
Confidence 999997653 45999999999999999 77 4 99999999999998754
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.87 E-value=9.9e-22 Score=193.69 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=130.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|.+ .+|||||+|.++++|.+|+.. +..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 35678999999999999999999999999999999864 369999999999999999984 788899888865
Q ss_pred ecchhHHHHHHhHHHHhhcCccccCCccCCCCCccCCCCCcEEEEEeccccccCcccccCCCCCCCCCcCCCCCCCCCCC
Q 043731 188 PKKEFEAERAKETEEFEKSRPAVGSNRKNNSNAEADYPKGLIVAFTLKNKSAEGSEEKNGSLKPANDSENACKPDGEPDS 267 (498)
Q Consensus 188 ~k~d~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~kg~iv~~~~k~~~~~~~~~~~g~~k~~~~~~~~~~~~~~~~~ 267 (498)
+...
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 5310
Q ss_pred CchhhhHHhhhhhcccCCCCCCccccccccccccCCCCCCCcccccccccCcceeeeccCCCccccHHHHHHHhccCCce
Q 043731 268 SDNAAAVESEQKASENDSNGEGKVEEKNELDSEDGDKSSDGSIEKGEEKEGKTSIDTYKDNMDVVMREDLKSVFHKFGTV 347 (498)
Q Consensus 268 ~~~~~~~e~~~k~~e~~~~~ee~~~~~~~~~~E~~~~~~~g~~~~~~~~~~~~~~vfv~nL~~~vt~EdLke~F~~fG~V 347 (498)
...+||+|||..+|+++|+++|++||.|
T Consensus 96 ----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 96 ----------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp ----------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ----------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCe
Confidence 1146999999999999999999999999
Q ss_pred EEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEec---CeEEEEEEcCChh
Q 043731 348 KFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVK---NFIAVLEPVTGEA 400 (498)
Q Consensus 348 ~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~---g~~~~v~~~~g~~ 400 (498)
..|.+.++ .+.|||+|.++++|.+|+..++ + |..+. ++.+.|..+....
T Consensus 124 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--~--~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 124 EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCG--D--GAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHH--H--SCEESSSSCCBCEEEECCCEE
T ss_pred EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhc--C--CeEEecCCCceEEEeeccccC
Confidence 99998765 4569999999999999999984 2 55555 8999999987653
No 24
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=159.48 Aligned_cols=92 Identities=32% Similarity=0.476 Sum_probs=85.8
Q ss_pred cceeeeccCCCcc-ccHHHHHHHhccCCceEEEEeecCCceEEEEeCC-HHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMDV-VMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEE-PEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~~-vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~-~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+++.|+|+||+.. +++++|+++|++||+|.||+|.+|..+|||+|.+ +++|++|+.++ |++|++|+|..+++++|
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l---n~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA---NNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT---TTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh---hcCCcEEeCcEEEEEEC
Confidence 4567899999999 9999999999999999999999999999999999 78999999987 79999999999999999
Q ss_pred CChhHHHHHHHHhhhhh
Q 043731 397 TGEAEKEYWSLLRGNQE 413 (498)
Q Consensus 397 ~g~~E~e~~~~~~~~~~ 413 (498)
+|++|++||+++.+.++
T Consensus 94 ~GeeE~~yw~Ki~ed~~ 110 (121)
T 1owx_A 94 EGEVEKEALKKIIEDQQ 110 (121)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887443
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=2.3e-17 Score=162.41 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=114.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
...+|||+|||..+|+++|+++|++||.|..|.+.++++.|||.|.++++|.+|+..++ |..|.|+.+.|..+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~-----g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELD-----GTILKSRPLRIRFATH 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcC-----CcEECCceeEeeeccc
Confidence 44589999999999999999999999999999999999999999999999999999884 8999999999998863
Q ss_pred hhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 399 EAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 399 ~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
+.++++.||......+.++++|+.+|.|.++++ ++|+.|.|+|+|||.
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~~~g~~~g~afV~ 143 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVV-VVDDRGRATGKGFVE 143 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEETTSCEEEEEEEE
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEe-eeCCCCCcCcEEEEE
Confidence 568999999999999999999999999999999 777899999999996
No 26
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=142.33 Aligned_cols=87 Identities=18% Similarity=0.384 Sum_probs=79.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||+|.+|+|+++.. +.++|||||+|.++++|.+|+.. +..++|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~--g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT--TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC--CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999875 77999999999999999999996 7889999999999
Q ss_pred cchhHHHHHH
Q 043731 189 KKEFEAERAK 198 (498)
Q Consensus 189 k~d~~~~k~~ 198 (498)
+.+|..++..
T Consensus 86 ~~~~~~~k~~ 95 (103)
T 1s79_A 86 KDDYFAKKNE 95 (103)
T ss_dssp HHHHHHHHHC
T ss_pred chHHHHHHHH
Confidence 9998876543
No 27
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=3.2e-17 Score=156.51 Aligned_cols=129 Identities=16% Similarity=0.014 Sum_probs=111.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+|+++|+++|++||+|..|.+.++. +.|||+|.++++|.+|++.+. +..+.|+.+.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~-----~~~~~g~~i~~ 89 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-----FDVIKGKPVRI 89 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh-----hhhcCCccccc
Confidence 4579999999999999999999999999999998643 469999999999999999874 89999999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
........... -...++++.||......+.|+++|+.+|.|.+|++ ++|. +-++|+|||.
T Consensus 90 ~~~~~~~~~~~----------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i-~~d~-~~~~g~~fV~ 149 (213)
T 4f02_A 90 MWSQRDPSLRK----------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE-NGSKGYGFVH 149 (213)
T ss_dssp EECCCCTHHHH----------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEET-TEEEEEEEEE
T ss_pred ccccccccccc----------cccccceECCcccccHHHHHHHHHhhcCCeEEEEe-eccC-CCCceEEEEE
Confidence 98866443221 13457999999999999999999999999999999 6775 5599999996
No 28
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=5.1e-17 Score=146.63 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=113.4
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|.+|++.++ |..+.|+.+.|.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-----~~~~~g~~l~v~ 77 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN-----GLRLQTKTIKVS 77 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC-----CCccCCceEEEE
Confidence 368999999999999999999999999999998766 679999999999999999884 899999999999
Q ss_pred EcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 395 PVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 395 ~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
.+....+ .....++++.||......+.++++|+.+|.|..+++......|.++|++||.
T Consensus 78 ~~~~~~~------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 78 YARPSSA------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp ECCCCCG------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ecCCCcc------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 9875432 2346779999999999999999999999999999995444589999999996
No 29
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.7e-17 Score=148.22 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=110.4
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+|||+|||..+|+++|+++|++||.|..|.+.++. +.|||.|.++++|++|+.. +..++|+.+.+.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-------~~~~~g~~i~v~ 76 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-------QHILDGKVIDPK 76 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-------CCEETTEECCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-------ccccCCeEcccc
Confidence 478999999999999999999999999999988653 5799999999999999873 678999999999
Q ss_pred EcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeecc-CCCCCCCccccc
Q 043731 395 PVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHE-KPGISSGTSFVR 465 (498)
Q Consensus 395 ~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 465 (498)
.+....+.. ...++|+.||......+.++++|+.+|.|.++++ ++| ..|.|+|+|||.
T Consensus 77 ~~~~~~~~~------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~ 135 (167)
T 2cjk_A 77 RAIPRDEQD------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL-MLDKDTGQSRGFGFVT 135 (167)
T ss_dssp ECCCHHHHH------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC-CCSSSSSTTSEEEEEE
T ss_pred cccchhhcc------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE-EEcCCCCccceEEEEE
Confidence 988765432 3557999999999999999999999999999999 565 479999999986
No 30
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=2.6e-17 Score=149.92 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=109.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC--------CceEEEEeCCHHHHHHHHHHHhhcccCCeEec---C
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG--------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVK---N 388 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g--------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~---g 388 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..+. +
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----~~~~~~~~~ 77 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH-----NMKVLPGMH 77 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT-----TTCCCTTCS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc-----CcEEccCCc
Confidence 357899999999999999999999999999998743 4569999999999999999884 44443 5
Q ss_pred eEEEEEEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 389 FIAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 389 ~~~~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
+.+.+....... .......++++.||......+.++++|+.+|.|.++++ ++|+.|.++|+|||.
T Consensus 78 ~~~~~~~~~~~~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~-~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 78 HPIQMKPADSEK-----------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI-LRGPDGLSRGCAFVT 142 (175)
T ss_dssp SCCEEEECGGGC-----------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTSCEEEEEEEE
T ss_pred cceEEccccccc-----------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE-EECCCCCEEEEEEEE
Confidence 677777664322 22345678999999999999999999999999999999 888889999999996
No 31
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.4e-17 Score=146.90 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=112.6
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+|||+|||..+|+++|+++|++||.|..|.+.++. +.|||+|.++++|.+|++.++ |..+.|+.+.+..+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN-----GKQIENNIVKINWA 76 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC-----CCccCCCeeEEEEc
Confidence 57999999999999999999999999999997654 469999999999999998884 99999999999998
Q ss_pred CChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 397 TGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 397 ~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
..... .......++++.||......+.++++|+.+|.|.++++......|.++|+|||.
T Consensus 77 ~~~~~----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 77 FQSQQ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp CCCCC----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCCCC----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEE
Confidence 65432 223346789999999999999999999999999999994444679999999996
No 32
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=7.9e-17 Score=145.97 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=112.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.+. |..+.|+.+.|.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-----~~~~~g~~l~v~ 78 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN-----GITVRNKRLKVS 78 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC-----CCEeCCcEEEEE
Confidence 478999999999999999999999999999987653 579999999999999999874 899999999999
Q ss_pred EcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccC-CCCCCCccccc
Q 043731 395 PVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEK-PGISSGTSFVR 465 (498)
Q Consensus 395 ~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 465 (498)
.+....+ .......++.||......+.++++|+.+|.|.++++ ++++ .|.++|++||.
T Consensus 79 ~~~~~~~------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 79 YARPGGE------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVR 137 (168)
T ss_dssp ECCCCSS------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEE
T ss_pred ecCCCcc------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEE-EEcCCCCCcceEEEEE
Confidence 8865432 234678999999999999999999999999999999 5554 89999999995
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=6.4e-17 Score=154.50 Aligned_cols=140 Identities=10% Similarity=-0.040 Sum_probs=110.4
Q ss_pred ceeeeccCCC-ccccHHHHHHHhccCCceEEEEeecC-CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 320 TSIDTYKDNM-DVVMREDLKSVFHKFGTVKFIDFKIG-AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 320 ~~~vfv~nL~-~~vt~EdLke~F~~fG~V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
++++||+||| +.+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.|+ |..|.|+.|.|..+.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~ln-----g~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLN-----NNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhC-----CCEECCceEEEEEcc
Confidence 4579999999 89999999999999999999999875 5789999999999999999984 999999999999875
Q ss_pred Chh--HHH--HHHH-------H-hhhhhcc-------------ccccccchhhhhhhhhhhhhhhcccCCCc--cceeee
Q 043731 398 GEA--EKE--YWSL-------L-RGNQERH-------------RDVKGEEKHLEAENKAASEKMIQQEDAQI--KPGKFE 450 (498)
Q Consensus 398 g~~--E~e--~~~~-------~-~~~~~k~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 450 (498)
.+. +++ .+.. . .....++ ....+|+.||..+..++.|+++|+.+|.| +++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~- 157 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV- 157 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE-
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-
Confidence 321 000 0000 0 0000011 12358999999999999999999999999 88887
Q ss_pred eccCCCCCCCcccccc
Q 043731 451 QHEKPGISSGTSFVRP 466 (498)
Q Consensus 451 ~~~~~~~~~~~~~~~~ 466 (498)
+++. |-++|+|||.=
T Consensus 158 ~~~~-~~~~g~gfV~f 172 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEW 172 (205)
T ss_dssp CSCC-SSSSEEEEEEC
T ss_pred EcCC-CCCceEEEEEe
Confidence 6665 67789999973
No 34
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.7e-16 Score=147.62 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=109.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+|+++|+++|++||.|..|.+.++ .+.|||.|.++++|.+|++. + +..|.|+.+.+
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~----~--~~~~~g~~l~v 86 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA----R--PHKVDGRVVEP 86 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT----C--SCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc----C--CCEECCEEeee
Confidence 457999999999999999999999999999998865 34699999999999999865 3 89999999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeecc-CCCCCCCccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHE-KPGISSGTSFVR 465 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 465 (498)
..+........- .......++|+.||......+.++++|+.+|.|.++++ ++| ..|.++|+|||.
T Consensus 87 ~~~~~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~ 152 (196)
T 1l3k_A 87 KRAVSREDSQRP------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVT 152 (196)
T ss_dssp EECCC-----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEE
T ss_pred ecccCccccccc------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-eecCCCCCccceEEEE
Confidence 998775443211 11123467999999999999999999999999999999 555 479999999996
No 35
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2e-16 Score=149.30 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=115.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+|+++|+++|++||.|..|.+.++ .+.|||.|.++++|.+|++.++ |..|.|+.|.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN-----SVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS-----SCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc-----CCeeCCeeEEE
Confidence 347999999999999999999999999999998753 5679999999999999999884 89999999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
..........-..... .........+++.||......+.++++|+.+|.|..+++......|.++|++||.
T Consensus 103 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 173 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQL-AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIE 173 (216)
T ss_dssp ECCSCCGGGHHHHHHH-HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ecCCCccccchhhhhh-hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEE
Confidence 9887665443221111 1122346789999999999999999999999999999994443579999999995
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=133.43 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=73.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
.+.++|||+|||+++|+++|+++|++||+|.+|+|++++. ++.++|||||+|.++++|.+|++. +..++|++|.|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4578999999999999999999999999999999999875 678999999999999999999984 8999999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
++
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 37
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=7.7e-17 Score=146.80 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=111.5
Q ss_pred eeeeccCCCccccHHHHHHHhccC----C-------ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKF----G-------TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~f----G-------~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~ 389 (498)
.+|||+|||..+|+++|+++|++| | .|..+.+.++++.|||+|.++++|++|+ .+ + |..|.|+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~---~--~~~~~g~ 78 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AF---D--GIIFQGQ 78 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GG---T--TCEETTE
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-Hh---C--CcEecCc
Confidence 478999999999999999999999 7 8899999999999999999999999998 55 4 8999999
Q ss_pred EEEEEEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccC-CCCCCCccccc
Q 043731 390 IAVLEPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEK-PGISSGTSFVR 465 (498)
Q Consensus 390 ~~~v~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 465 (498)
.+.+....... ..-...++++.||......+.++++|+.+|.|.++.+ ++|+ .|.++|+|||.
T Consensus 79 ~i~v~~~~~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 79 SLKIRRPHDYQ------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCE 142 (172)
T ss_dssp ECEEECCSSCC------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCSEEEEEEEE
T ss_pred eeeecCCcccC------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE-EecCCCCCcceEEEEE
Confidence 99998765432 1122678999999999999999999999999999999 6664 89999999995
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=2.5e-16 Score=136.48 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=68.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
...+|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.++++|++|++. +..++|+.|.|.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~---~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC---CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999885 34789999999999999999984 88999999998765
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=131.32 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=70.2
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCC-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh---CCeeCCeEEEEee
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ---GLFYAGVELHLKP 188 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~---~~~~~G~~l~v~~ 188 (498)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++. ++.++|||||+|.++++|.+|++. +..++|++|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~-t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS-SGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS-SCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC-CCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 37899999999999999999999999 899999999876 678999999999999999999974 4569999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
+.
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=128.31 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=70.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc--eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--C----CeeCCe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK--VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--G----LFYAGV 182 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~--V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~----~~~~G~ 182 (498)
..-.||||+|||+++|+++|+++|++||. |.+|+|++++. +++++|||||+|.++++|.+|++. + ..++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~-tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ-TQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS-SSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC-CCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34679999999999999999999999995 67999999986 688999999999999999999984 3 369999
Q ss_pred EEEEeecc
Q 043731 183 ELHLKPKK 190 (498)
Q Consensus 183 ~l~v~~k~ 190 (498)
+|.|.+++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99998875
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=129.19 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=73.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. +++++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~-tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR-TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC-CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3568999999999999999999999999999999999875 678999999999999999999984 8899999999988
Q ss_pred cch
Q 043731 189 KKE 191 (498)
Q Consensus 189 k~d 191 (498)
...
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 753
No 42
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=2.5e-15 Score=122.89 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=71.7
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|.+|++. +..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999998865 678999999999999999999985 7789999999875
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=3.3e-15 Score=121.29 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=72.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|+|||+|.++++|.+|+.. +..++|+.|.|.+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC-CCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4579999999999999999999999999999999998865 677899999999999999999974 8899999999987
Q ss_pred c
Q 043731 189 K 189 (498)
Q Consensus 189 k 189 (498)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 44
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=2.9e-15 Score=139.37 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=112.4
Q ss_pred eeeeccCCCccccHHHHHHHhccC----C-------ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKF----G-------TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~f----G-------~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~ 389 (498)
.+|||+|||..+++++|+++|++| | .|..+.+.++++.|||.|.++++|++|+ .+ | |..|.|+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l---~--g~~~~g~ 78 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AF---D--GIIFQGQ 78 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GG---T--TEEETTE
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-Hh---c--CCEEcCc
Confidence 478999999999999999999999 6 7888889999999999999999999999 65 4 9999999
Q ss_pred EEEEEEcCChhHHHHHH--------HHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccC-CCCCCC
Q 043731 390 IAVLEPVTGEAEKEYWS--------LLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEK-PGISSG 460 (498)
Q Consensus 390 ~~~v~~~~g~~E~e~~~--------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 460 (498)
.|.|..+.......-.. ............++++.||......+.++++|+.+|.|.++++ ++|+ .|.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE-EECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE-eecCCCCCcce
Confidence 99999875531100000 0000111134578999999999999999999999999999999 6664 899999
Q ss_pred ccccc
Q 043731 461 TSFVR 465 (498)
Q Consensus 461 ~~~~~ 465 (498)
++||.
T Consensus 158 ~afV~ 162 (198)
T 2yh0_A 158 YAFCE 162 (198)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99995
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=3.6e-15 Score=125.98 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=73.0
Q ss_pred ccceEEeccCCC------CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC-e
Q 043731 112 DVRTIAATPLEY------DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG-V 182 (498)
Q Consensus 112 ~~rtV~V~nLp~------~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G-~ 182 (498)
..++|||+|||+ ++++++|+++|++||.|..|+|+++.. +++++|||||+|.++++|++|++. +..++| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA-TGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT-TTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 368999999999 999999999999999999999999875 688999999999999999999984 889999 9
Q ss_pred EEEEeecch
Q 043731 183 ELHLKPKKE 191 (498)
Q Consensus 183 ~l~v~~k~d 191 (498)
.|.|.+..+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999998754
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=119.99 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=71.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||.++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 468999999999999999999999999999999998865 577999999999999999999994 88899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=120.88 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=71.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|.+|++. +..++|+.|.|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD-TRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS-SCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4578999999999999999999999999999999999875 577899999999999999999974 7889999999987
Q ss_pred c
Q 043731 189 K 189 (498)
Q Consensus 189 k 189 (498)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=5.1e-15 Score=121.25 Aligned_cols=79 Identities=28% Similarity=0.379 Sum_probs=72.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
.+.++|||+|||+++|+++|+++|++||.|..|+++++.. ++.++|+|||+|.++++|.+|+.. +..++|+.|.|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-SGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-SSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 4579999999999999999999999999999999998865 577899999999999999999953 88899999999887
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 83 ~ 83 (89)
T 3ucg_A 83 R 83 (89)
T ss_dssp T
T ss_pred c
Confidence 4
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=1.1e-14 Score=117.77 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=70.6
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.+|||+|||+++++++|+++|++||.|..|+++++.. ++.++|+|||+|.++++|++|+.. +..++|+.|.|.+..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 5899999999999999999999999999999998865 577999999999999999999994 889999999998874
No 50
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.6e-15 Score=123.56 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=73.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecc
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKK 190 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~ 190 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.++..++|+.|.|.+..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-CCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 4578999999999999999999999999999999998865 578999999999999999999998888999999998874
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=121.80 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL-TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT-TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999999999999999999874 577899999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 85 a~ 86 (99)
T 1whw_A 85 ST 86 (99)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=1.5e-14 Score=120.67 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=71.6
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
.++|||+|||.++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|++. +..++|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ-TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 58999999999999999999999999999999998865 577899999999999999999984 889999999998874
No 53
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=124.80 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=71.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-TKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT-TCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC-CCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 45679999999999999999999999999999999999875 578999999999999999999996 7889999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 101 a~ 102 (109)
T 2rs2_A 101 AF 102 (109)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 54
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=6.1e-15 Score=117.20 Aligned_cols=73 Identities=23% Similarity=0.206 Sum_probs=67.7
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
+|||+|||+++|+++|+++|++||.|..|++++++. ++.++|||||+|.++++|++|++. +..++|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT-TNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS-STTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 589999999999999999999999999999998875 577999999999999999999985 7889999999875
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=120.35 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=72.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|+|||+|.++++|.+|+.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-SSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3468999999999999999999999999999999998875 577899999999999999999994 7889999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 56
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=121.38 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=72.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||.++++++|+++|++||.|..|+|++++. ++.++|||||+|.+.++|++|++. +..++|+.|.|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-KQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-TCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999998875 577899999999999999999985 78899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=120.77 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=72.1
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeE-EcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSV-RLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~V-ri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+++|+++|+++|++||.|..| +|++++. ++.++|||||+|.++++|++|+.. +..++|+.|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD-TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT-TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC-CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56899999999999999999999999999999 9998865 577899999999999999999994 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 83 a~ 84 (96)
T 1x5t_A 83 AF 84 (96)
T ss_dssp SC
T ss_pred ec
Confidence 74
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=118.72 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=71.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||.++|+++|+++|++||.|..|+|+++....+.++|+|||+|.++++|.+|+.. +..++|+.|.|.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999988753344899999999999999999994 89999999999876
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-15 Score=118.10 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.9
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
++|||+|||+++++++|+++|++||.|..|++++++. ++.++|+|||+|.++++|++|+.. ...++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL-TKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC-SSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC-CCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999998875 577999999999999999999995 67899999998764
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=4.5e-15 Score=122.65 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=67.6
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCC--ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHV--KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G--~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
.+|||+|||+++|+++|+++|++|| .|..|+|++++. +++++|||||+|.+.++|++|++. +..++|+.|.|.+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5899999999999999999999999 999999999875 678999999999999999999974 78999999999887
Q ss_pred ch
Q 043731 190 KE 191 (498)
Q Consensus 190 ~d 191 (498)
..
T Consensus 81 ~~ 82 (90)
T 3p5t_L 81 NK 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 61
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=122.54 Aligned_cols=80 Identities=25% Similarity=0.338 Sum_probs=73.2
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34579999999999999999999999999999999998865 577999999999999999999994 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 864
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=119.86 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=72.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||.++|+++|+++|++||.|..|+|+++.. +++++|||||+|.+.++|.+|+.. +..++|+.|.|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD-TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS-SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC-CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 468999999999999999999999999999999998875 677999999999999999999994 88899999999887
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 63
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=121.60 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS-SCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4578999999999999999999999999999999998865 577999999999999999999974 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 89 a~ 90 (102)
T 2cqb_A 89 AK 90 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 64
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=4.7e-15 Score=117.68 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=67.6
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
+|||+|||+++|+++|+++|++||.|..|+++++.. ++.++|||||+|.++++|.+|+.. +..++|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-CSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 699999999999999999999999999999998875 577899999999999999999996 7889999998765
No 65
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=1.6e-14 Score=132.08 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=106.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCce-----EEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTV-----KFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V-----~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+|||+|||..+++++|+++|++||.| ......+.++.|||+|.++++|.+|++ + + |..|.|+.|.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l---~--g~~~~g~~l~v 85 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-L---T--GLKVFGNEIKL 85 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-G---G--GEEETTEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-c---C--CCEeCCeEEEE
Confidence 35589999999999999999999999853 444455678899999999999999994 6 4 99999999999
Q ss_pred EEcCChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeeccCCCCCCCccccc
Q 043731 394 EPVTGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHEKPGISSGTSFVR 465 (498)
Q Consensus 394 ~~~~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (498)
..+..... ...-...++++.||......+.++++|+.+|.|..+ ...|.++|+|||.
T Consensus 86 ~~~~~~~~----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 142 (175)
T 1fje_B 86 EKPKGRDS----------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 142 (175)
T ss_dssp ECCCCSSC----------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEE
T ss_pred ecCCCccc----------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEE
Confidence 99876432 122346789999999999999999999999998766 5579999999995
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=124.37 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=73.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
+...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN-SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC-SSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC-CCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 35679999999999999999999999999999999998875 577899999999999999999953 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 101 a~ 102 (114)
T 2cq4_A 101 SQ 102 (114)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=121.45 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=72.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999875 577999999999999999999994 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 92 a~ 93 (105)
T 1x5u_A 92 AS 93 (105)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=119.48 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. +.++|||||+|.++++|++|+.. +..++|+.|.|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4568999999999999999999999999999999998864 67899999999999999999984 8889999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=2.9e-14 Score=121.69 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=73.3
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT-TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999998875 577999999999999999999984 889999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 864
No 70
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=121.92 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=72.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-TKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-SCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-CCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4579999999999999999999999999999999998875 577999999999999999999994 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
+.
T Consensus 90 a~ 91 (103)
T 2dnm_A 90 AR 91 (103)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 71
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.53 E-value=1.3e-14 Score=125.58 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=69.2
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.|. |..|+|+.|.|..+
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~-----~~~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEEC
Confidence 37999999999999999999999999999998765 3469999999999999999884 89999999999999
Q ss_pred CChhHHHHHHHHhhhhhccccccccchhhhhhhhhh
Q 043731 397 TGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAA 432 (498)
Q Consensus 397 ~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 432 (498)
..+.++..-.. ...-...+.|++||......+
T Consensus 81 ~~~~~~~~~~~----~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 81 KSRKEREAELG----ARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp SCCCC-------------------------------
T ss_pred CCccccccccc----cccCCCCceEeCCCCCCcccc
Confidence 87666542211 111234578999998766544
No 72
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=9.9e-14 Score=125.82 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=67.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.+.++|++|+..|+ |..|+|+.|.|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 144 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELRV 144 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-----TEESSSSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 347899999999999999999999999999998765 3469999999999999999874 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+...
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 998653
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=122.97 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++++++|+++|++|| |..|+|+++...+++++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45679999999999999999999999999 999999998733578999999999999999999953 7889999999887
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 74
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.52 E-value=1.4e-14 Score=130.78 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..++||+|||+.+++++|+++|++||.|..|.+.++ ++.|||+|.++++|.+|+..++ |..|+|+.|.|..+..
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD-----GRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHS-----SSCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEcCC
Confidence 457899999999999999999999999999999887 7899999999999999999884 8899999999998865
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
+
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=120.32 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=72.3
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++. ++.++|||||+|.++++|.+|+.. +..++|+.|.|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3567999999999999999999999999999999999886 467899999999999999999974 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=122.07 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=73.2
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-CCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 35678999999999999999999999999999999998875 678999999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 99 ~a~ 101 (106)
T 1p27_B 99 WCF 101 (106)
T ss_dssp ESE
T ss_pred eec
Confidence 864
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=2.4e-14 Score=123.22 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=73.4
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35679999999999999999999999999999999998865 577999999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 91 ~a~ 93 (115)
T 2dgo_A 91 WAT 93 (115)
T ss_dssp ESS
T ss_pred Ecc
Confidence 874
No 78
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=122.54 Aligned_cols=80 Identities=11% Similarity=0.162 Sum_probs=73.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
+...++|||+|||+++|+++|+++|++||.|..|+|++++. +++++|||||+|.+.++|++|+.. ...++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ-TGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS-SCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 35679999999999999999999999999999999999875 577999999999999999999996 4489999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 93 a~ 94 (116)
T 2cqd_A 93 AY 94 (116)
T ss_dssp ST
T ss_pred cc
Confidence 74
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=121.13 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=72.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--------CCeeCCe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--------GLFYAGV 182 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--------~~~~~G~ 182 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4578999999999999999999999999999999999875 677999999999999999999984 6789999
Q ss_pred EEEEeecc
Q 043731 183 ELHLKPKK 190 (498)
Q Consensus 183 ~l~v~~k~ 190 (498)
.|.|.+..
T Consensus 92 ~l~v~~a~ 99 (111)
T 1x4h_A 92 QLKVDLAV 99 (111)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99998864
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=119.11 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=71.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCC--CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVAD--KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~--~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
..++|||+|||+++|+++|+++|++||.|..|+|+++... ++.++|||||+|.+.++|++|+.. +..++|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4689999999999999999999999999999999987642 347899999999999999999994 889999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 84 ~a~ 86 (98)
T 2cpf_A 84 ISE 86 (98)
T ss_dssp CSS
T ss_pred Ecc
Confidence 864
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=3.4e-14 Score=122.26 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=67.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++|+++|+++|++||.|..|+|+++. .++|||||+|.+.++|.+|+.. +..++|+.|.|.+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP----ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST----TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC----CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46899999999999999999999999999999998763 3589999999999999999994 78899999988776
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 83 ~ 83 (115)
T 3lqv_A 83 N 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 82
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=121.43 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=72.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|.+|++. +..++|+.|.|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE-TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS-SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999998875 577899999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 83
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2.2e-14 Score=123.96 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=72.5
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|++. +..++|+.|.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ-TSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS-SSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-CCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35679999999999999999999999999999999998865 577999999999999999999984 888999999988
Q ss_pred ec
Q 043731 188 PK 189 (498)
Q Consensus 188 ~k 189 (498)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=123.00 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=72.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCce-eeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKV-NSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V-~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.| ..|+|+++. +++++|||||+|.+.++|++||.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999999999999999999999 899999986 477999999999999999999986 7889999999988
Q ss_pred cch
Q 043731 189 KKE 191 (498)
Q Consensus 189 k~d 191 (498)
...
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=123.81 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-SKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT-TSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999865 577999999999999999999996 77899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 104 ~ 104 (116)
T 1x4b_A 104 V 104 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=122.38 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=72.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|++|+.. +..++|+.|.|.+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-TNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 4679999999999999999999999999999999999865 577999999999999999999995 78899999998776
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 93 ~ 93 (105)
T 2dh8_A 93 T 93 (105)
T ss_dssp C
T ss_pred c
Confidence 4
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=119.85 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee--------EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS--------VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~--------Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
...++|||+|||+++|+++|+++|++||.|.. |+|++++. +++++|||||+|.+.++|++|++. +..++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45789999999999999999999999999999 99998865 577999999999999999999984 88899
Q ss_pred CeEEEEeec
Q 043731 181 GVELHLKPK 189 (498)
Q Consensus 181 G~~l~v~~k 189 (498)
|+.|.|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999998775
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=121.45 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=73.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|++. +..++|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3569999999999999999999999999999999998865 578999999999999999999984 7889999999998
Q ss_pred cch
Q 043731 189 KKE 191 (498)
Q Consensus 189 k~d 191 (498)
...
T Consensus 85 a~~ 87 (104)
T 1p1t_A 85 AAS 87 (104)
T ss_dssp TTC
T ss_pred CCC
Confidence 754
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=2.8e-14 Score=122.94 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4568999999999999999999999999999999998875 577999999999999999999974 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 102 a~ 103 (115)
T 2cpz_A 102 KR 103 (115)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 90
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=3.4e-14 Score=140.26 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=107.4
Q ss_pred ceeeeccCCCccccHHHHH----HHhccCCceEEEEeec---CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLK----SVFHKFGTVKFIDFKI---GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLk----e~F~~fG~V~~V~~~~---g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+.+|||+|||..+++++|+ ++|++||.|..|.+.+ .++.|||+|.++++|.+|++.++ |..|.|+.|.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 83 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ-----GFPFYDKPMR 83 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhc-----CCeeCCcEEE
Confidence 4579999999999999977 9999999999998775 45789999999999999999884 8999999999
Q ss_pred EEEcCChhHHH------HHHHHh---h----------h------------------------------------------
Q 043731 393 LEPVTGEAEKE------YWSLLR---G----------N------------------------------------------ 411 (498)
Q Consensus 393 v~~~~g~~E~e------~~~~~~---~----------~------------------------------------------ 411 (498)
|..+..+.... +..+.. . .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99885543210 000000 0 0
Q ss_pred --------------------------------------hhccccccccchhhhhhhhhhhhhhhcccCCCccceeeeecc
Q 043731 412 --------------------------------------QERHRDVKGEEKHLEAENKAASEKMIQQEDAQIKPGKFEQHE 453 (498)
Q Consensus 412 --------------------------------------~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (498)
...-....+++.||......+.++++|+.||.|.++++ +.+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~-~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE-ecC
Confidence 00012355999999999999999999999999999998 555
Q ss_pred CCCCCCCccccc
Q 043731 454 KPGISSGTSFVR 465 (498)
Q Consensus 454 ~~~~~~~~~~~~ 465 (498)
. +|+|||.
T Consensus 243 ~----~g~afV~ 250 (282)
T 3pgw_A 243 R----HDIAFVE 250 (282)
T ss_pred C----CcEEEEE
Confidence 3 6899986
No 91
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=122.83 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=73.1
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|++. +..++|+.|.|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE-TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT-TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999999999999999999999999999998865 678999999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 102 ~a~ 104 (108)
T 2jrs_A 102 HVT 104 (108)
T ss_dssp CSC
T ss_pred Ecc
Confidence 864
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=121.00 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=73.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCcee--------eEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVN--------SVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY 179 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~--------~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~ 179 (498)
....++|||+|||+++|+++|+++|++||.|. .|+|++++. ++.++|||||+|.+.++|++|+.. +..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-TGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-TCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC-CCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 45679999999999999999999999999999 699998865 577999999999999999999984 8899
Q ss_pred CCeEEEEeecc
Q 043731 180 AGVELHLKPKK 190 (498)
Q Consensus 180 ~G~~l~v~~k~ 190 (498)
+|+.|.|.+..
T Consensus 91 ~g~~l~V~~a~ 101 (113)
T 2cpe_A 91 QGSKLKVSLAR 101 (113)
T ss_dssp TTEECEEECSS
T ss_pred CCCEEEEEECC
Confidence 99999998864
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=119.89 Aligned_cols=80 Identities=20% Similarity=0.393 Sum_probs=72.6
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccc-cCCCCcccceEEEEeCCHHHHHHHHH---hCCeeCCeEEE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRH-VADKRLFCGTALIEFSTEEDAEKVLK---QGLFYAGVELH 185 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~-~~~~~~~kG~aFVeF~s~e~A~kAl~---~~~~~~G~~l~ 185 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++ .. ++.++|||||+|.+.++|.+|+. ++..++|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG-TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS-SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC-CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 356799999999999999999999999999999999988 43 57789999999999999999998 37889999999
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|.+..
T Consensus 91 v~~a~ 95 (107)
T 2cph_A 91 LEWAD 95 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98874
No 94
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=135.20 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=106.9
Q ss_pred eeeeccCCCc-cccHHHHHHHhccCCceEEEEeecCC-ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 321 SIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGA-ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 321 ~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g~-~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+|||+|||. .+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..+.|+.+.|..+..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN-----GHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHT-----TCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCeecCeEEEEEEecC
Confidence 4789999999 99999999999999999999998775 679999999999999999884 8999999999998864
Q ss_pred hhHHHH--HHHHhhhhhcc---------------------ccccccchhhhhhhhhhhhhhhcccCC-CccceeeeeccC
Q 043731 399 EAEKEY--WSLLRGNQERH---------------------RDVKGEEKHLEAENKAASEKMIQQEDA-QIKPGKFEQHEK 454 (498)
Q Consensus 399 ~~E~e~--~~~~~~~~~k~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 454 (498)
.....- ..........| ....+++.||......+.++++|+.+| .|.++++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i-~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE-SST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE-EeC-
Confidence 321000 00000000000 145588999999999999999999999 9999988 444
Q ss_pred CCCCCCccccc
Q 043731 455 PGISSGTSFVR 465 (498)
Q Consensus 455 ~~~~~~~~~~~ 465 (498)
++|+|||.
T Consensus 157 ---~~g~afV~ 164 (198)
T 1qm9_A 157 ---DRKMALIQ 164 (198)
T ss_dssp ---TSSCEEEE
T ss_pred ---CCcEEEEE
Confidence 37999996
No 95
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=116.31 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=63.7
Q ss_pred cceEEeccCCCCC------cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCe-E
Q 043731 113 VRTIAATPLEYDV------KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGV-E 183 (498)
Q Consensus 113 ~rtV~V~nLp~~~------t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~-~ 183 (498)
.++|||+|||+++ |+++|+++|++||.|..|+|++. +++++|||||+|.++++|.+|+.. +..++|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE---DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB---TTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC---CCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3799999999999 78999999999999999999843 567999999999999999999994 7888888 7
Q ss_pred EEE
Q 043731 184 LHL 186 (498)
Q Consensus 184 l~v 186 (498)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 764
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.6e-14 Score=118.42 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=71.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++|| |..|+|+++....+.++|||||+|.+.++|++|+.. +..++|+.|.|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3468999999999999999999999999 999999998753277899999999999999999953 88899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 92 ~ 92 (104)
T 1wi8_A 92 D 92 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 97
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=6.4e-14 Score=119.22 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
++.++||+|||+.+|+++|+++|++||.|..|.+.++++.|||+|++.++|.+|+..++ ...+.|+|+.|+|..+..
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln---~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAA---DNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHH---HSCEEETTEEEEEEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhc---CCCceeCCcEEEEEeccc
Confidence 34579999999999999999999999999999999999999999999999999999984 336789999999998865
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 4
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=3.6e-14 Score=123.76 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=73.6
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEe
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLK 187 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~ 187 (498)
.....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-SGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-TSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345679999999999999999999999999999999998865 577899999999999999999953 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
++.
T Consensus 111 ~a~ 113 (124)
T 2jwn_A 111 PKR 113 (124)
T ss_dssp ESS
T ss_pred ECC
Confidence 874
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=3.2e-14 Score=120.52 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=72.0
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee---CCeEE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY---AGVEL 184 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~---~G~~l 184 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|++. +..+ +|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF-TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS-SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 35679999999999999999999999999999999999875 677999999999999999999984 6666 88999
Q ss_pred EEeecc
Q 043731 185 HLKPKK 190 (498)
Q Consensus 185 ~v~~k~ 190 (498)
.|.+..
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998864
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=120.04 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=70.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee-EEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS-VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~-Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|.. |+|+++. +++++|||||+|.++++|++||.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~--~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF--QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS--SSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC--CCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 45689999999999999999999999999997 9999883 578999999999999999999996 7889999999877
Q ss_pred c
Q 043731 189 K 189 (498)
Q Consensus 189 k 189 (498)
.
T Consensus 91 ~ 91 (104)
T 1wg5_A 91 S 91 (104)
T ss_dssp E
T ss_pred C
Confidence 5
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-14 Score=122.84 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=70.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..+|||+|||+.+++++|+++|++||.|..|.+.++++.|||+|+++++|++|++.+ +..+..|+|+.|.|..+..+
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l---~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYY---TSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHH---TTSCCEETTEECCBCCCSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHh---ccCCceECCEEEEEEEcCCC
Confidence 457999999999999999999999999999999999999999999999999999987 33478999999999987653
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.4e-14 Score=121.09 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=71.2
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. .++|||||+|.+.++|++|+.. +..++|+.|.|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT---BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC---CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45679999999999999999999999999999999998853 3899999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 103 ~a~ 105 (109)
T 2err_A 103 NAT 105 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 103
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=3.7e-14 Score=136.62 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=108.1
Q ss_pred cceeeeccCCCc-cccHHHHHHHhccCCceEEEEeecCC-ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGA-ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g~-~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.+.+|||+|||. .+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..|.|+.|.|..+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~-----g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN-----GHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHT-----TCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEEEe
Confidence 456899999999 99999999999999999999998875 779999999999999999884 89999999999988
Q ss_pred CChhHH-----HHHHHHh-----hhhhc-------------cccccccchhhhhhhhhhhhhhhcccCC-Cccceeeeec
Q 043731 397 TGEAEK-----EYWSLLR-----GNQER-------------HRDVKGEEKHLEAENKAASEKMIQQEDA-QIKPGKFEQH 452 (498)
Q Consensus 397 ~g~~E~-----e~~~~~~-----~~~~k-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 452 (498)
...... +...... ....+ -....+++.||......+.++++|+.+| .|.++++ ++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~ 186 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQ 186 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE-CS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE-EE
Confidence 643100 0000000 00000 0135688999999999999999999999 9999998 44
Q ss_pred cCCCCCCCccccc
Q 043731 453 EKPGISSGTSFVR 465 (498)
Q Consensus 453 ~~~~~~~~~~~~~ 465 (498)
+ ++|+|||.
T Consensus 187 ~----~~g~afV~ 195 (229)
T 2adc_A 187 K----DRKMALIQ 195 (229)
T ss_dssp S----STTCEEEE
T ss_pred C----CCcEEEEE
Confidence 3 47999996
No 104
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=6.2e-14 Score=118.39 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=71.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++|| |..|+|+++.. +++++|||||+|.+.++|++|+.. +..++|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD-TDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC-CCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 99999999875 678999999999999999999953 88899999999887
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 91 ~ 91 (103)
T 2dng_A 91 E 91 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.6e-14 Score=117.09 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=70.9
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. .++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER---GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT---TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35679999999999999999999999999999999998753 3899999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 89 ~a~ 91 (103)
T 2cq3_A 89 NAT 91 (103)
T ss_dssp ECC
T ss_pred Ecc
Confidence 864
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.49 E-value=3.8e-14 Score=117.53 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=69.7
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++|+++|+++|++||.|..++++++.. +++++|||||+|.++++|++|++. +..++|+.|.|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC-CCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 458999999999999999999999999999988888765 677999999999999999999984 88999999998765
No 107
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=121.86 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=66.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.++++|.+|++. +..++|++|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35689999999999999999999999999999999864 59999999999999999983 36899999998
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 87 ~~A~ 90 (105)
T 1sjq_A 87 QFSN 90 (105)
T ss_dssp CCCS
T ss_pred EEcC
Confidence 8764
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=118.62 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=71.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCcee-eEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE----
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVN-SVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE---- 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~-~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~---- 183 (498)
...++|||+|||+++++++|+++|++||.|. .|+|++++. ++.++|||||+|.++++|++|+.. +..++|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-TGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-SCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-CCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 3578999999999999999999999999999 999998875 677999999999999999999994 78899998
Q ss_pred EEEeec
Q 043731 184 LHLKPK 189 (498)
Q Consensus 184 l~v~~k 189 (498)
|.|.+.
T Consensus 86 l~v~~a 91 (99)
T 2div_A 86 FKLNYA 91 (99)
T ss_dssp CCEEET
T ss_pred EEEeec
Confidence 887765
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=126.69 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=72.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCC--ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHV--KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G--~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
..++|||+|||+++|+++|+++|++|| .|..|+|+++.. +++++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 468999999999999999999999999 999999998875 678999999999999999999995 889999999999
Q ss_pred ecch
Q 043731 188 PKKE 191 (498)
Q Consensus 188 ~k~d 191 (498)
+...
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8754
No 110
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=119.10 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=71.6
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME---GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC---SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 346799999999999999999999999999999999987 467899999999999999999994 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 89 ~a~ 91 (103)
T 2d9p_A 89 LAQ 91 (103)
T ss_dssp ECS
T ss_pred Eec
Confidence 874
No 111
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=5.4e-14 Score=122.10 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=72.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++|+++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR--TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST--TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999999886 477899999999999999999984 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 83 a~ 84 (116)
T 2fy1_A 83 AK 84 (116)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 112
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.3e-14 Score=117.81 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=70.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++++++|+++|++||.|..|+|+++.. ..+|||||+|.++++|.+|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT---SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC---SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC---CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34679999999999999999999999999999999998853 2689999999999999999984 788999999999
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 875
No 113
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=7.8e-14 Score=118.33 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=71.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+.+|+++|+++|++||.|..|+|+++. ++.++|+|||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 357899999999999999999999999999999999886 477899999999999999999994 8899999999987
Q ss_pred c
Q 043731 189 K 189 (498)
Q Consensus 189 k 189 (498)
.
T Consensus 105 a 105 (107)
T 3ulh_A 105 V 105 (107)
T ss_dssp E
T ss_pred e
Confidence 5
No 114
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=2.4e-14 Score=129.89 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=72.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY-TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS-CTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999999875 678999999999999999999984 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 147 a~ 148 (158)
T 2kn4_A 147 AR 148 (158)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 115
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=7.2e-14 Score=122.13 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=73.3
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|.|+++.. ++.++|||||+|.+.++|++|++. +..++|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 35678999999999999999999999999999999998875 677899999999999999999974 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 98 ~a~ 100 (126)
T 3ex7_B 98 WCF 100 (126)
T ss_dssp ESE
T ss_pred Eec
Confidence 874
No 116
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=8.6e-14 Score=123.28 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=71.4
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|++++. ++.++|||||+|.++++|++|++. +..++|+.|.|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE-TEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT-TCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC-CCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34679999999999999999999999999999999999865 577999999999999999999974 788999999987
Q ss_pred e
Q 043731 188 P 188 (498)
Q Consensus 188 ~ 188 (498)
+
T Consensus 139 ~ 139 (140)
T 2ku7_A 139 L 139 (140)
T ss_dssp C
T ss_pred e
Confidence 5
No 117
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-14 Score=117.28 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=68.1
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+++++++|+++|++||.|..|+|++++. ++.++|||||+|.++++|.+|+.. +..++|+.|++.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-TNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-SCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 568999999999999999999999999999999998865 577899999999999999999984 6778888776543
No 118
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=5.4e-14 Score=119.66 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=70.1
Q ss_pred cccceEEeccCCCCC------cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCe
Q 043731 111 LDVRTIAATPLEYDV------KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGV 182 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~------t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~ 182 (498)
...++|||+|||+.+ |+++|+++|++||.|..|+|++. ++.++|||||+|.++++|.+|+.. +..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~---~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE---DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB---TTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC---CCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 346899999999999 88999999999999999999842 567999999999999999999994 8889998
Q ss_pred -EEEEeecch
Q 043731 183 -ELHLKPKKE 191 (498)
Q Consensus 183 -~l~v~~k~d 191 (498)
.|.|.+..+
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999988754
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=5.5e-14 Score=115.87 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=70.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME---NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES---SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999874 467899999999999999999994 7889999999887
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 83 a~ 84 (92)
T 2dgv_A 83 DR 84 (92)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 120
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=7.8e-14 Score=117.92 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=70.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC---eEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG---VELH 185 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G---~~l~ 185 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+|+.. +..+.| +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 457999999999999999999999999999999999886 467899999999999999999984 777887 9999
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|.+..
T Consensus 91 V~~a~ 95 (105)
T 2dnh_A 91 VKFAD 95 (105)
T ss_dssp EEESC
T ss_pred EEECc
Confidence 98874
No 121
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=117.47 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=70.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..+.++++.. +++++|||||+|.++++|++|++. +..++|+.|.|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3468999999999999999999999999999888877764 677899999999999999999974 7899999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.5e-14 Score=120.77 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=71.3
Q ss_pred cccceEEeccCCCCCcHHHHH---HHhccCCceeeEEcccccCC--CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 111 LDVRTIAATPLEYDVKREDVE---AFFSQHVKVNSVRLPRHVAD--KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~---~~F~~~G~V~~Vri~r~~~~--~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
...++|||+|||+++++++|+ ++|++||.|..|+|+++... .+.++|||||+|.++++|++|++. +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 99999999999999887642 245779999999999999999994 88899999
Q ss_pred EEEeecc
Q 043731 184 LHLKPKK 190 (498)
Q Consensus 184 l~v~~k~ 190 (498)
|.|.+..
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9998864
No 123
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=117.78 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=69.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR----RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS----SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC----CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999764 34789999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 96 a~ 97 (109)
T 1x4a_A 96 PR 97 (109)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=119.79 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=69.5
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k~ 190 (498)
+.++|||+|||+++|+++|+++|++| .|..|+|+++.. ++++|||||+|.++++|++||.. +..++|+.|.|....
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~--g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV--GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT--CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC--CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 899999999864 67899999999999999999975 788999999998764
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=117.36 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=65.7
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--C--CeeCCeEEE
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--G--LFYAGVELH 185 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~--~~~~G~~l~ 185 (498)
....++|||+|||+++|+++|+++|++||.|.+|+|++ .+|+|||+|.+.++|.+|++. + ..+.|++|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 34578999999999999999999999999999999875 369999999999999999984 3 358999999
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|.+++
T Consensus 91 V~~S~ 95 (100)
T 3r27_A 91 VNYST 95 (100)
T ss_dssp EEECS
T ss_pred EEecc
Confidence 98864
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=7.1e-14 Score=121.69 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc---eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK---VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~---V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||. |..|+|+++.. ++++|||||+|.++++|++||.. +..++|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE--GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS--SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC--CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999998864 67999999999999999999996 78899999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 127
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=118.41 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++.. +.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD--GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT--CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4578999999999999999999999999999999998863 67899999999999999999984 8899999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 128
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=7e-14 Score=123.84 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS-SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4578999999999999999999999999999999998875 577999999999999999999994 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 123 a~ 124 (129)
T 2kxn_B 123 SI 124 (129)
T ss_dssp CS
T ss_pred ec
Confidence 64
No 129
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=115.54 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=68.8
Q ss_pred ccceEEeccCCCCCcHHHHH----HHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 112 DVRTIAATPLEYDVKREDVE----AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~----~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
+.++|||+|||+++++++|+ ++|++||.|..|+|+++.. + +|||||+|.++++|++|+.. +..++|+.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-Y---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-T---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-C---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46899999999999999999 9999999999999998864 2 79999999999999999994 8889999999
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|.+..
T Consensus 84 V~~a~ 88 (96)
T 2dgx_A 84 VSLAT 88 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98864
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=119.15 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=70.9
Q ss_pred cceeeeccCCCc-cccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 319 KTSIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 319 ~~~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
+..+|||+|||+ .+++++|+++|++||.|..|.+.++++.|||+|+++++|.+|++.++ ..+..|.|+.|.|..+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~---~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYT---TTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHH---HSCCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHc---CCCceECCcEEEEEECC
Confidence 345799999999 99999999999999999999999999999999999999999999984 33678999999999987
Q ss_pred Ch
Q 043731 398 GE 399 (498)
Q Consensus 398 g~ 399 (498)
..
T Consensus 91 ~~ 92 (102)
T 1x4d_A 91 KY 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.46 E-value=6.7e-14 Score=124.42 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=73.4
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35679999999999999999999999999999999998875 678899999999999999999994 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
++.
T Consensus 118 ~a~ 120 (139)
T 1u6f_A 118 LAA 120 (139)
T ss_dssp ESS
T ss_pred ECC
Confidence 874
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=3.8e-14 Score=119.34 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=71.7
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeec
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPK 189 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k 189 (498)
....++|||+|||+++++++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|++|+.++..++|+.|.|.+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEEC
Confidence 3567999999999999999999999999999999999986 47799999999999999999999777899999998765
No 133
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=9.9e-14 Score=125.97 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=73.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.++++|++|+.. +..++|+.|.|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999999998875 577999999999999999999994 8899999999999
Q ss_pred cch
Q 043731 189 KKE 191 (498)
Q Consensus 189 k~d 191 (498)
+..
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 754
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=117.02 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=66.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++. +..+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 34689999999999999999999999999999998763 69999999999999999983 57799999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 86 ~~a~ 89 (101)
T 2cq1_A 86 QYSN 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8874
No 135
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2e-14 Score=118.15 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=69.2
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
++|||+|||.++++++|+++|++||.|..|+|+++.. ++.++|||||+|.+.+ |.+|+.. +..++|+.|.|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE-TKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS-SCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC-CCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 6899999999999999999999999999999999875 5778999999999999 9999995 788999999998864
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=113.27 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=70.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++| .|..|+|+++. +++++|+|||+|.++++|++|+.. +..++|+.|.|.+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA--HGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT--TSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC--CCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 457899999999999999999999999 99999999983 577999999999999999999995 78899999999876
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 85 ~ 85 (91)
T 2dgw_A 85 K 85 (91)
T ss_dssp S
T ss_pred C
Confidence 3
No 137
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.8e-14 Score=119.82 Aligned_cols=76 Identities=21% Similarity=0.193 Sum_probs=68.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++||. ..|+|+++. +++++|||||+|.++++|++||.. +..++|+.|.|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP--DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS--SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45689999999999999999999999995 499999886 478999999999999999999975 78899999998765
No 138
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=116.85 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..+|||+|||+.+++++|+++|++||.|..|.+.++++.|||+|.+.++|.+|++.+. ..+..|+|+.|.|..+..+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~---~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYS---AVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHH---HSCCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhc---cCCceECCcEEEEEEcCcc
Confidence 4579999999999999999999999999999999999999999999999999999874 3388999999999998653
No 139
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=117.88 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=65.2
Q ss_pred ccceEEeccCCC-CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 112 DVRTIAATPLEY-DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 112 ~~rtV~V~nLp~-~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
..++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.++++|.+|+.. ...+.|++|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 468999999999 9999999999999999999999864 48999999999999999984 35699999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=120.48 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=66.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++. +..+.|++|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 34689999999999999999999999999999999864 69999999999999999983 46899999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 102 ~~a~ 105 (119)
T 2ad9_A 102 QFSN 105 (119)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8864
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=116.95 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=70.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc-eeeEEcc-cccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK-VNSVRLP-RHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVEL 184 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~-V~~Vri~-r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l 184 (498)
...++|||+|||+++|+++|+++|++||. |..|+|+ ++.. ++.++|||||+|.++++|.+|+.. +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD-KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT-TTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC-CCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999999999999999999998 9999998 5554 667999999999999999999984 378999999
Q ss_pred EEeecc
Q 043731 185 HLKPKK 190 (498)
Q Consensus 185 ~v~~k~ 190 (498)
.|.+..
T Consensus 85 ~V~~a~ 90 (109)
T 2dis_A 85 AVDWAE 90 (109)
T ss_dssp EEEESC
T ss_pred EEEEcC
Confidence 998874
No 142
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.6e-14 Score=117.45 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhcc-CCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCe-eCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQ-HVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLF-YAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~-~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~-~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++ ||.|..|+|+++. ++.++|||||+|.+.++|.+|+.. +.. ++|+.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 35689999999999999999999999 9999999999886 467899999999999999999994 677 99999998
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 7763
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-14 Score=119.50 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=69.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEee
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKP 188 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~ 188 (498)
....++|||+|||+++|+++|+++|++||.|.. .++++.. ++.++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~-~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR-TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE-EETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC-CCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEE
Confidence 446789999999999999999999999999999 6666654 567899999999999999999985 7889999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 92 a~ 93 (101)
T 1fj7_A 92 PK 93 (101)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 144
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.44 E-value=2.8e-13 Score=112.36 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=67.9
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
-+||+||++.+|+++|+++|.+||+|..+.+..++|.|||+|.++++|++|+.+| | |..+.|+.|.|..++
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~L---n--~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMAL---N--NCVLANTTIFAESPS 79 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHH---T--TEEETTEEEEEECCC
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHh---c--CCEECCcEEEEEECC
Confidence 4789999999999999999999999999999999999999999999999999998 4 999999999999993
No 145
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=1.2e-13 Score=123.10 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=72.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY-TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS-SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4579999999999999999999999999999999998875 577999999999999999999984 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 124 a~ 125 (135)
T 2lea_A 124 AR 125 (135)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 146
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=2.4e-13 Score=118.67 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++++++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS--SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC--CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999999886 467899999999999999999994 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
+.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 147
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3e-13 Score=109.75 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=65.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHH---hCCeeCCeEEEEe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK---QGLFYAGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~---~~~~~~G~~l~v~ 187 (498)
...++|||+|||.++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+. ++..++|+.|.|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45789999999999999999999999999999999863 6999999999999999998 3688999999988
Q ss_pred ec
Q 043731 188 PK 189 (498)
Q Consensus 188 ~k 189 (498)
+.
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=1.3e-13 Score=123.70 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=71.5
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc---eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK---VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~---V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||. |..|+|+++.. ++++|||||+|.++++|++|++. +..++|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~--g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE--GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS--SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC--CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 35689999999999999999999999999 89999999864 77999999999999999999985 78899999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 8874
No 149
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=6.1e-14 Score=124.04 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=70.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee--EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CC----eeCCe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS--VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GL----FYAGV 182 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~--Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~----~~~G~ 182 (498)
...++|||+|||+++|+++|+++|++||.|.. |+|++++. +++++|||||+|.+. +|.+|+.. +. .++|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-TQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-SSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-CCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 45789999999999999999999999999977 99999975 678999999999999 99999985 66 89999
Q ss_pred EEEEeecc
Q 043731 183 ELHLKPKK 190 (498)
Q Consensus 183 ~l~v~~k~ 190 (498)
.|.|.+..
T Consensus 99 ~l~V~~a~ 106 (131)
T 2m2b_A 99 TINVEFAK 106 (131)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99988764
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=2.1e-13 Score=113.50 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=69.7
Q ss_pred cccceEEeccCCCCCcHHHHH----HHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEE
Q 043731 111 LDVRTIAATPLEYDVKREDVE----AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVEL 184 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~----~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l 184 (498)
...++|||+|||.++++++|+ ++|++||.|..|+|++. +.++|||||+|.+.++|.+|+.. +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS----LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH----HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC----CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 457899999999999999999 99999999999999853 45789999999999999999984 888999999
Q ss_pred EEeecch
Q 043731 185 HLKPKKE 191 (498)
Q Consensus 185 ~v~~k~d 191 (498)
.|.+...
T Consensus 82 ~v~~a~~ 88 (97)
T 1nu4_A 82 RIQYAKT 88 (97)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 9988753
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=2.8e-13 Score=112.13 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=63.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecc
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKK 190 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~ 190 (498)
....+|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.++++|+++......+.|+.|.|.+..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~------srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP------FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS------CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC------CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 45789999999999999999999999999999999874 679999999999999965444455779999988764
No 152
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=113.45 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=65.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
.+++||+|||..+|+++|+++|++||.|..|.+.+++ +.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~~gr~l~V 93 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-----GLRLQSKTIKV 93 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-----CCEECCEEEEE
Confidence 3579999999999999999999999999999998654 359999999999999999984 99999999999
Q ss_pred EEcC
Q 043731 394 EPVT 397 (498)
Q Consensus 394 ~~~~ 397 (498)
..+.
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 8764
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=115.67 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
...++|||+|||+++++++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++. ...++|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34689999999999999999999999999999998753 69999999999999999983 45699999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 86 ~~a~ 89 (104)
T 1wex_A 86 NYST 89 (104)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8874
No 154
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=3.1e-13 Score=124.12 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=72.7
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++.. ++.++|||||+|.+.++|.+||.. +..++|+.|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-CCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35578999999999999999999999999999999998865 677999999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 874
No 155
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=116.10 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..+|||+|||+.+++++|+++|++||.|..|.+.++++.|||+|++.++|.+|++.+. ..++.|+|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~---~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA---DVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHH---HSCCBSSSSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhc---cCCceECCEEEEEEEccC
Confidence 4579999999999999999999999999999999999999999999999999999884 336789999999999865
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=118.20 Aligned_cols=78 Identities=27% Similarity=0.308 Sum_probs=71.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc---eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK---VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~---V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||. |..|+|+++.. ++++|||||+|.+.++|++||.. +..++|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD--GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT--STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC--CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 45789999999999999999999999998 99999998864 67999999999999999999996 77899999998
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 8764
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=120.69 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=69.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCce----eeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKV----NSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELH 185 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V----~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~ 185 (498)
.+.++|||+|||+++|+++|+++|++||.| ..|+|+++. +++++|||||+|.++++|++||.. +..++|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 456899999999999999999999999975 689999884 577999999999999999999986 7789999998
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|....
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87653
No 158
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-13 Score=120.98 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=70.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
+.+|||+|||+.+++++|+++|++||.|..|.+.++++.|||+|++.++|.+|++.+. ..+..|+|+.|.|..+..+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~---~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYT---SVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHH---HHCCCBTTBCCEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhc---cCCceECCeEEEEEEccCC
Confidence 4579999999999999999999999999999999999999999999999999999874 2268899999999998653
No 159
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=113.08 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||+.+++++|+++|++||.|..|.+.++. +.|||.|.++++|++|++.|+ |..|+|+.|.|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-----g~~~~gr~i~V 80 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-----LTSVMGNIIHA 80 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 3479999999999999999999999999999987653 459999999999999999984 99999999999
Q ss_pred EEcCChhHHH-HHHHH
Q 043731 394 EPVTGEAEKE-YWSLL 408 (498)
Q Consensus 394 ~~~~g~~E~e-~~~~~ 408 (498)
..+....++. +|..+
T Consensus 81 ~~a~~~~~~~~~~~~~ 96 (110)
T 3s8s_A 81 QLDIKGQQRMKYYELI 96 (110)
T ss_dssp EECSTTHHHHHHHHHH
T ss_pred EECCCCcHHHHHHHHh
Confidence 9997766665 55443
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-13 Score=115.86 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=67.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCC--CcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADK--RLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~--~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|. +.++.+.... ++++|||||+|.++++|++|++.-..++|+.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3568999999999999999999999999999 8888776421 578999999999999999999975568999988654
No 161
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=111.50 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=65.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecc
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKK 190 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~ 190 (498)
..++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|++|+.....++|+.|.|.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP------FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS------CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC------CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999864 679999999999999987665566799999987753
No 162
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=111.94 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=66.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.| +++++. ++.++|||||+|.++++|++|+.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ--NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS--SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC--CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 457999999999999999999999999987 566663 467899999999999999999994 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 88 a~ 89 (101)
T 2fc9_A 88 QG 89 (101)
T ss_dssp CS
T ss_pred cC
Confidence 74
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=2e-13 Score=120.84 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=68.9
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCcee--eEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVN--SVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~--~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~ 187 (498)
...++|||+|||+++|+++|+++|++| .|. .|+|+++.. ++++|||||+|.++++|++||+. +..++|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~--GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE--GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS--SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 356899999999999999999999999 566 999999864 67999999999999999999986 788999999987
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 653
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.7e-13 Score=115.86 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=67.2
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|++ .+|||||+|.+.++|++|+.. +..++|+.|.|.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999874 468999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 80 ~a~ 82 (111)
T 1whx_A 80 WAP 82 (111)
T ss_dssp EEE
T ss_pred ECC
Confidence 874
No 165
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.41 E-value=3.5e-13 Score=111.79 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=65.7
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
...|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++. +..+.|++|.|....
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999854 579999999999999999995 889999999998874
No 166
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=119.80 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=71.4
Q ss_pred cceeeeccCCCcc-ccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 319 KTSIDTYKDNMDV-VMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 319 ~~~~vfv~nL~~~-vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
...+|||+|||+. +++++|+++|++||.|..|.+.++++.|||+|+++++|.+|++.++ ..+..|+|+.|.|..+.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~---~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCL---KKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHH---HSCCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhc---cCCceECCEEEEEEECc
Confidence 3558999999998 9999999999999999999999999999999999999999999884 34788999999999987
Q ss_pred Chh
Q 043731 398 GEA 400 (498)
Q Consensus 398 g~~ 400 (498)
...
T Consensus 101 ~~~ 103 (112)
T 1x4f_A 101 KYK 103 (112)
T ss_dssp SCS
T ss_pred ccc
Confidence 643
No 167
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=7e-13 Score=111.31 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred hccccceEEeccCCC-CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 109 EQLDVRTIAATPLEY-DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~-~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
.....++|||+|||+ ++++++|+++|++||.|..|+|. +|||||+|.+.++|.+|+.. +..++|+.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 346689999999998 99999999999999999999983 59999999999999999994 8889999999
Q ss_pred Eeecc
Q 043731 186 LKPKK 190 (498)
Q Consensus 186 v~~k~ 190 (498)
|.+..
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98764
No 168
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-13 Score=119.92 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=69.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++||.|..+.++.+.. +++++|||||+|.+.++|.+||.. +..++|+.|.|.+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3568999999999999999999999999999855544443 577999999999999999999995 78899999999887
Q ss_pred ch
Q 043731 190 KE 191 (498)
Q Consensus 190 ~d 191 (498)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 169
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.9e-13 Score=114.11 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=68.1
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||.++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+.. +..++|+.|.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999874 69999999999999999974 889999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 95 ~a~ 97 (109)
T 1x4g_A 95 WGK 97 (109)
T ss_dssp CCC
T ss_pred ecC
Confidence 874
No 170
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.40 E-value=5.3e-13 Score=115.56 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=67.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCC-ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHV-KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G-~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+++|+++|+++|++|| .|..+.|+.. .++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 457999999999999999999999999 9999998642 3689999999999999999984 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.8e-13 Score=114.82 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=68.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee--------C
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY--------A 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~--------~ 180 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++. ++.++|||||+|.+.++|.+|+.. +..+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 457899999999999999999999999999999999886 467899999999999999999984 6667 5
Q ss_pred CeEEEEeecc
Q 043731 181 GVELHLKPKK 190 (498)
Q Consensus 181 G~~l~v~~k~ 190 (498)
|++|.|.+..
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6777777653
No 172
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.8e-13 Score=109.64 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=65.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++|+++|+++|++||.|..|+|+ +|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 357899999999999999999999999999999986 58999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 77 a~ 78 (90)
T 2dnq_A 77 SK 78 (90)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 173
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.8e-13 Score=112.34 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||.++++++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3468999999999999999999999999999999873 469999999999999999974 8899999999887
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
.+
T Consensus 98 a~ 99 (101)
T 2la4_A 98 GK 99 (101)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 174
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.39 E-value=8.6e-13 Score=113.10 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=66.9
Q ss_pred hccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 109 EQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 109 ~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
.....++|||+|||.++|+++|+++|++||.|..|+|+ +|||||+|.+.++|++|+.. +..++|+.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 35678999999999999999999999999999999986 59999999999999999984 88999999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 98 ~~a~ 101 (108)
T 2jvo_A 98 VYSK 101 (108)
T ss_dssp ESCS
T ss_pred EEec
Confidence 8874
No 175
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5e-13 Score=111.97 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=66.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 45789999999999999999999999999999999753 69999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 86 a~ 87 (99)
T 2cpj_A 86 AC 87 (99)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 176
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=5.1e-13 Score=111.02 Aligned_cols=75 Identities=27% Similarity=0.397 Sum_probs=66.5
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..+ . .++.++|||||+|.++++|.+|+.. +..++|+.|.|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467999999999999999999999999998777 2 1467899999999999999999994 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 87 ~a~ 89 (96)
T 1fjc_A 87 YTG 89 (96)
T ss_dssp ECS
T ss_pred EcC
Confidence 864
No 177
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=118.28 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=67.5
Q ss_pred ccceEEeccCCCCCcHHHHH----HHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 112 DVRTIAATPLEYDVKREDVE----AFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~----~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
..++|||+|||+.+++++|+ ++|++||.|..|.+++. ++++|||||+|.+.++|.+|+.. +..+.|++|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~----~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS----DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC----CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC----CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 46899999999999999876 79999999999998753 45799999999999999999984 8889999999
Q ss_pred Eeecch
Q 043731 186 LKPKKE 191 (498)
Q Consensus 186 v~~k~d 191 (498)
|.++..
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998753
No 178
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=8.3e-13 Score=110.19 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=66.1
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC--CeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA--GVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~--G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|++|++. +..++ |+.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 34689999999999999999999999999999998753 68999999999999999994 78888 999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 88 ~~a~ 91 (97)
T 1why_A 88 DFAK 91 (97)
T ss_dssp EECC
T ss_pred EECC
Confidence 8864
No 179
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=113.16 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=65.7
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeecc
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPKK 190 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k~ 190 (498)
++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.++++|.+|+.. +..++|+.|.|.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 48999999999999999999999999999999875 579999999999999999994 788999999998874
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=2.1e-13 Score=122.66 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=68.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++|| |..|+|+++.. ++++|||||+|.++++|++||.. +..++|+.|.|...
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~--g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD--GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS--SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC--CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 77999999864 77999999999999999999964 77899999988665
No 181
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=3.3e-13 Score=117.14 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=64.9
Q ss_pred ccceEEeccCCCC-CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh----CCeeCCeEEEE
Q 043731 112 DVRTIAATPLEYD-VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ----GLFYAGVELHL 186 (498)
Q Consensus 112 ~~rtV~V~nLp~~-~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~----~~~~~G~~l~v 186 (498)
..++|||+|||++ +|+++|+++|++||.|.+|+|++ .+|||||+|.+.++|.+|++. ...+.|++|.|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 4689999999998 99999999999999999999964 369999999999999999983 46699999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.++.
T Consensus 97 ~~a~ 100 (112)
T 1x4f_A 97 DLSE 100 (112)
T ss_dssp EEEC
T ss_pred EECc
Confidence 8864
No 182
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.37 E-value=1.4e-12 Score=105.20 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=67.2
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-----CCeeCCcEEEEE
Confidence 36899999999999999999999999999998866 4569999999999999999884 899999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+..+
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 98754
No 183
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=7.1e-13 Score=128.67 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCC--ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHV--KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G--~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
..++|||+|||+++|+++|+++|++|| .|..|+|++++. +++++|||||+|.+.++|.+||.. +..|+|+.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999999999 999999999875 678999999999999999999984 789999999999
Q ss_pred ecch
Q 043731 188 PKKE 191 (498)
Q Consensus 188 ~k~d 191 (498)
+...
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 8754
No 184
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.37 E-value=6.8e-13 Score=114.07 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=82.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC---CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG---AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g---~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+.++||+|||..+++++|+++|++||.|..|.+.++ .+.|||.|.++++|.+|+..|+ |..|+|+.|.|..+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLS-----GFNVSNRYLVVLYY 82 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHT-----TCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEe
Confidence 347899999999999999999999999999998653 4679999999999999999884 89999999999998
Q ss_pred CChhHHHHHHHHhhhhhccccccccchhhhhhhhhhhhhhhcccCCC
Q 043731 397 TGEAEKEYWSLLRGNQERHRDVKGEEKHLEAENKAASEKMIQQEDAQ 443 (498)
Q Consensus 397 ~g~~E~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (498)
...... ++++.....+.+.++|+.+|.
T Consensus 83 ~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF--------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT--------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh--------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 753322 345566667777888887775
No 185
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=111.36 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=65.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC-----eE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG-----VE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G-----~~ 183 (498)
...++|||+|||+++|+++|+++|++||.|..|+|+++ |||||+|.+.++|++|++. +..++| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 34689999999999999999999999999999999764 8999999999999999994 778999 99
Q ss_pred EEEeecc
Q 043731 184 LHLKPKK 190 (498)
Q Consensus 184 l~v~~k~ 190 (498)
|.|.+..
T Consensus 85 i~V~~a~ 91 (108)
T 1x4c_A 85 IRVKVDG 91 (108)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9998864
No 186
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.8e-12 Score=108.34 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=70.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-----GQVFQGRMLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-----TEESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-----CCEECCcEEE
Confidence 35689999999999999999999999999999997654 679999999999999999874 8999999999
Q ss_pred EEEcCChhH
Q 043731 393 LEPVTGEAE 401 (498)
Q Consensus 393 v~~~~g~~E 401 (498)
|..+..+.+
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999877544
No 187
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.5e-13 Score=116.62 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=67.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..+.+..+.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999996554433322 467899999999999999999984 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 102 a~ 103 (115)
T 2cpx_A 102 GK 103 (115)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 188
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.4e-14 Score=120.98 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=71.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceee--------EEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNS--------VRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~--------Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
...++|||+|||+++++++|+++|++||.|.. |+|+++.. ++.++|||||+|.+.++|++|+.. +..++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 46789999999999999999999999999999 89988865 577899999999999999999984 78899
Q ss_pred CeEEEEeecc
Q 043731 181 GVELHLKPKK 190 (498)
Q Consensus 181 G~~l~v~~k~ 190 (498)
|+.|.|.+..
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999988764
No 189
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=106.42 Aligned_cols=71 Identities=13% Similarity=0.224 Sum_probs=65.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|++ |||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4578999999999999999999999999999999863 5999999999999999984 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 79 a~ 80 (92)
T 2dgt_A 79 ST 80 (92)
T ss_dssp SS
T ss_pred cc
Confidence 74
No 190
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=108.15 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=70.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEec--CeEEEEEEc
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVK--NFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~--g~~~~v~~~ 396 (498)
....|||+|||..+++++|+++|++||.|..|.+.++++.|||+|.++++|++|++.|+ |..|+ |+.|.|..+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMR-----GFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHT-----TCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHC-----CCEeCCCCcEEEEEEC
Confidence 44689999999999999999999999999999999999999999999999999999884 88899 999999988
Q ss_pred CCh
Q 043731 397 TGE 399 (498)
Q Consensus 397 ~g~ 399 (498)
..+
T Consensus 91 ~~~ 93 (97)
T 1why_A 91 KSG 93 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.35 E-value=1.2e-12 Score=113.30 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=68.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCC-ceEEEEee--cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFG-TVKFIDFK--IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG-~V~~V~~~--~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
...|||+|||+.+++++|+++|++|| +|.++.+. +.++.|||+|.++++|++|++.| | |..|+|+.|.|+.+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l---n--g~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERL---N--NIEFRGSVITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT---T--TEEETTEEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc---C--CCEECCeEEEEEEC
Confidence 45799999999999999999999999 99999985 45788999999999999999988 4 99999999999998
Q ss_pred CChh
Q 043731 397 TGEA 400 (498)
Q Consensus 397 ~g~~ 400 (498)
.+..
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7653
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=105.38 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=67.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
...++||+|||..+++++|+++|++||.|..|.+.++++.|||+|.++++|++|++.|. +|..++|+.|.|+.+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~----~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSF----NKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTT----TTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhc----CCeeECCCEEEEEec
Confidence 34579999999999999999999999999999999999999999999999999998761 289999999998865
No 193
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.35 E-value=1.6e-12 Score=109.73 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=64.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.++++|.+|+.. +..++|+.|.|.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 46899999999999999999999999999999885 46999999999999999994 78899999999887
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 81 ~ 81 (103)
T 2dgu_A 81 K 81 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=114.26 Aligned_cols=76 Identities=9% Similarity=0.146 Sum_probs=66.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCC-ceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFG-TVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG-~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
.+|||+|||+.+|+++|+++|++|| +|..|.++++ ++.|||+|.++++|++|++++ .+++.|+|+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~----~~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN----QHSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT----TTEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc----CCCeEECCEEEEE
Confidence 4689999999999999999999999 8999988754 456999999999999999875 3488999999999
Q ss_pred EEcCChh
Q 043731 394 EPVTGEA 400 (498)
Q Consensus 394 ~~~~g~~ 400 (498)
..+..+.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9886543
No 195
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=112.64 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=69.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..++||+|||..+++++|+++|++||.|..|.+.++++.|||+|.++++|++|+..|+ |..|+|+.|.|..+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLA-----YSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHT-----TCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhC-----CCEECCeEEEEEECCC
Confidence 3579999999999999999999999999999999999999999999999999999984 8999999999998754
No 196
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=106.49 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=65.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|..|+|++ |||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4578999999999999999999999999999999863 5999999999999999984 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 78 a~ 79 (90)
T 2dnp_A 78 ST 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 197
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.4e-12 Score=106.59 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred ceeeeccCCCccccHHHHH----HHhccCCceEEEEeecC---CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLK----SVFHKFGTVKFIDFKIG---AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLk----e~F~~fG~V~~V~~~~g---~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+||+|||..+++++|+ ++|++||.|..|.+.++ ++.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~-----g~~~~gr~l~ 83 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH-----RYKIGSKKIL 83 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 4579999999999999999 99999999999999865 5679999999999999999984 9999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998654
No 198
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.6e-12 Score=106.70 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=69.0
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|+..|+ |..|+|+.|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH-----GTVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEEE
Confidence 3458999999999999999999999999999999876 5679999999999999999884 899999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+..+
T Consensus 89 ~a~~~ 93 (103)
T 2cq3_A 89 NATAR 93 (103)
T ss_dssp ECCSS
T ss_pred EcccC
Confidence 98653
No 199
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.2e-12 Score=104.83 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=68.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .|||+|.++++|.+|+..|+ |..|+|+.|.|..+..
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLD-----NTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHT-----TEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhC-----CCeeCCcEEEEEEccC
Confidence 3568999999999999999999999999999999866 99999999999999999884 9999999999999865
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 200
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=105.88 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=66.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec-------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI-------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~-------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
..++||+|||..+++++|+++|++||.|..|.+.+ ..+.|||+|.++++|.+|++.++ |..|+|+.|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-----GGQIDGQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-----CCeECCeEEE
Confidence 45789999999999999999999999999999864 45679999999999999999884 9999999999
Q ss_pred EEEcCC
Q 043731 393 LEPVTG 398 (498)
Q Consensus 393 v~~~~g 398 (498)
|..+..
T Consensus 79 v~~a~~ 84 (88)
T 4a8x_A 79 ATAVLA 84 (88)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 998754
No 201
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.2e-12 Score=109.15 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=64.6
Q ss_pred cccceEEeccCCC-CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 111 LDVRTIAATPLEY-DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 111 ~~~rtV~V~nLp~-~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
...++|||+|||+ ++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+.. +..+.|+.|.|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4678999999998 99999999999999999999983 58999999999999999994 788999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 864
No 202
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=2.3e-12 Score=104.79 Aligned_cols=70 Identities=17% Similarity=0.410 Sum_probs=63.3
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccC----C-------ceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCe
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQH----V-------KVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLF 178 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~----G-------~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~ 178 (498)
...++|||+|||+++|+++|+++|++| | .|.+++++++ +|||||+|.++++|.+|+.. +..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 357899999999999999999999999 8 9999998753 69999999999999999953 888
Q ss_pred eCCeEEEEe
Q 043731 179 YAGVELHLK 187 (498)
Q Consensus 179 ~~G~~l~v~ 187 (498)
++|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999875
No 203
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.33 E-value=2.3e-12 Score=105.81 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=64.4
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++++++|+++|++| .|..|+|. +++|||||+|.++++|++|++. +..++|+.|.|.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 46899999999999999999999999 99999984 3679999999999999999994 88899999999876
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.33 E-value=1.2e-12 Score=117.99 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=68.6
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+.. +..++|++|.|.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 356799999999999999999999999999999999875 479999999999999999984 888999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 144 ~a~ 146 (150)
T 2i2y_A 144 LSN 146 (150)
T ss_dssp ECC
T ss_pred EcC
Confidence 864
No 205
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=103.82 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=66.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..++|+.|.|
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v 80 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGRQIRT 80 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEE
Confidence 4578999999999999999999999999999998763 569999999999999999884 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+..+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 987653
No 206
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=3.8e-12 Score=108.57 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=68.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecC-----eEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN-----FIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g-----~~~~v~ 394 (498)
...|||+|||..+++++|+++|++||.|..|.+.++ +.|||+|.++++|++|++.| | |..|.| +.|.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l---~--g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKL---D--NTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHS---S--SEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHH---C--cCCccCCcCcceEEEEE
Confidence 457999999999999999999999999999999987 89999999999999999987 4 999999 999999
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
.+..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9876
No 207
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.33 E-value=4e-12 Score=105.84 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=69.4
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.|.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~ 77 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-----GYQLGSRFLKCG 77 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEE
Confidence 47899999999999999999999999999999765 4679999999999999999884 899999999999
Q ss_pred EcCChhHH
Q 043731 395 PVTGEAEK 402 (498)
Q Consensus 395 ~~~g~~E~ 402 (498)
.+......
T Consensus 78 ~a~~~~~~ 85 (96)
T 2x1f_A 78 YSSNSDIS 85 (96)
T ss_dssp ECSCSSGG
T ss_pred EcCCCCCC
Confidence 99775543
No 208
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=107.84 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=66.8
Q ss_pred ccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEe
Q 043731 110 QLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLK 187 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~ 187 (498)
....++|||+|||+++|+++|+++|++|+ .|+++++.. ++.++|||||+|.++++|.+|+.. +..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE-TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS-SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34679999999999999999999999885 556666654 567899999999999999999984 889999999998
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+..
T Consensus 88 ~a~ 90 (102)
T 2fc8_A 88 WAK 90 (102)
T ss_dssp ECC
T ss_pred Eec
Confidence 874
No 209
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=104.93 Aligned_cols=74 Identities=22% Similarity=0.157 Sum_probs=67.9
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .|||+|.++++|++|++.++ |..|+|+.|.|..+..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFVHMEKEADAKAAIAQLN-----GKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--EEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEECCC
Confidence 3457899999999999999999999999999999866 99999999999999999884 8999999999999865
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7e-12 Score=104.97 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..|+|+.|.|.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~ 91 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD-----GMTIKENIIKVA 91 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TEESSSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEEE
Confidence 4579999999999999999999999999999998755 569999999999999999884 899999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+...
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98654
No 211
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.5e-12 Score=106.07 Aligned_cols=71 Identities=24% Similarity=0.295 Sum_probs=64.6
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccC--CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQH--VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~--G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+|+.. +..++|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 457899999999999999999999999 999998763 58999999999999999994 88899999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 8874
No 212
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.32 E-value=4.2e-12 Score=102.79 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|.+|++.++ |..|+|+.|.|
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 81 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTIRV 81 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEE
Confidence 457899999999999999999999999999998653 5569999999999999999884 89999999999
Q ss_pred EEc
Q 043731 394 EPV 396 (498)
Q Consensus 394 ~~~ 396 (498)
..+
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
No 213
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=108.56 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=65.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|+++|++||.|. ++++.. .++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999999999997 565543 4689999999999999999974 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 91 a~ 92 (97)
T 2e5j_A 91 AR 92 (97)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 214
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=2.1e-12 Score=108.09 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=69.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
...|||+|||..+++++|+++|++||.|..|.+.++++.|||+|.++++|.+|++.|. |..|+|+.|.|..+..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELD-----NMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHT-----TCCBTTBCCEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhC-----CCEeCCceEEEEEcCCC
Confidence 4479999999999999999999999999999999999999999999999999999884 88999999999988653
No 215
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4e-12 Score=104.56 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=67.6
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
...++||+|||..+++++|+++|++||.|..|.+. ++.|||+|.++++|++|++.++ |..|+|+.|.|+.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLH-----HYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHT-----TCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhc-----CCccCCcEEEEEECCC
Confidence 35689999999999999999999999999999998 5699999999999999999884 8999999999998865
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
.
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=3.3e-12 Score=108.93 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=69.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++++.|||.|.++++|.+|+..|. |..|+|+.|.|..+..+
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVN-----GTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcC-----CCEECCcEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999884 89999999999987654
No 217
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=2.4e-12 Score=120.18 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=71.0
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
..++|||+|||+++++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~--~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR--SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT--TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35799999999999999999999999999999999886 467899999999999999999994 78899999999886
Q ss_pred c
Q 043731 190 K 190 (498)
Q Consensus 190 ~ 190 (498)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 218
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2e-12 Score=106.84 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=63.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCc-eeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--C-CeeCCeEEEE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVK-VNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--G-LFYAGVELHL 186 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~-V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~-~~~~G~~l~v 186 (498)
...++|||+|||+++|+++|+++|++||. |..+.++ .+|||||+|.+.++|.+|+.. + ..++|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 35689999999999999999999999999 6666652 469999999999999999984 6 8899999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
.+..
T Consensus 78 ~~a~ 81 (93)
T 2cqh_A 78 DYSV 81 (93)
T ss_dssp EECC
T ss_pred EEcc
Confidence 8874
No 219
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=116.11 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=67.0
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeE--Ecccc---cCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSV--RLPRH---VADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~V--ri~r~---~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
...++|||+|||+++|+++|+++|++||.|..+ +++.+ .. ++.++|||||+|.+.++|.+|+.. +..++|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356899999999999999999999999999875 22222 11 466899999999999999999994 88999999
Q ss_pred EEEeecc
Q 043731 184 LHLKPKK 190 (498)
Q Consensus 184 l~v~~k~ 190 (498)
|.|.++.
T Consensus 122 l~V~~a~ 128 (143)
T 3egn_A 122 MVVQFAR 128 (143)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9999874
No 220
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.1e-12 Score=105.91 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=68.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|+..|+ |..|.|+.|.|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN-----GRKILGKEVKVNW 89 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT-----TEEETTEEEEEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC-----CCCcCCCeEEEEE
Confidence 457999999999999999999999999999999873 4679999999999999999884 9999999999999
Q ss_pred cCChh
Q 043731 396 VTGEA 400 (498)
Q Consensus 396 ~~g~~ 400 (498)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 87643
No 221
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.31 E-value=2.6e-12 Score=109.72 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=64.6
Q ss_pred ccceEEeccCCCC-CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYD-VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~-~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|++|+.. +..++|+.|.|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4589999999999 999999999999999999988 369999999999999999974 8889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.31 E-value=2.4e-12 Score=136.34 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||+.+|+++|+++|++||.|..|.|+.+ .+.|||.|.++++|.+|+.+| | |..|+|+.|.|
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l---n--g~~i~gr~i~V 176 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA---D--GKKIDGRRVLV 176 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc---C--CCEECCEEEEE
Confidence 347899999999999999999999999999998754 567999999999999999988 4 99999999999
Q ss_pred EEcCChhH
Q 043731 394 EPVTGEAE 401 (498)
Q Consensus 394 ~~~~g~~E 401 (498)
..+.+..-
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987543
No 223
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.5e-12 Score=111.93 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=67.2
Q ss_pred ceeeec--cCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEe-----cCeEEE
Q 043731 320 TSIDTY--KDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSV-----KNFIAV 392 (498)
Q Consensus 320 ~~~vfv--~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i-----~g~~~~ 392 (498)
+.++|| +||++.+++++|+++|++||.|..|.+.++++.|||+|.++++|++|+++|+ |..| .|+.++
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLN-----GKEVVDDLGQKITLY 99 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTT-----TCEEECTTSCEEECE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCEEccccCCCcEEE
Confidence 446899 7799999999999999999999999999999999999999999999999984 8877 688999
Q ss_pred EEEcCC
Q 043731 393 LEPVTG 398 (498)
Q Consensus 393 v~~~~g 398 (498)
|..+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 988764
No 224
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.31 E-value=2.7e-12 Score=108.38 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecC---eE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN---FI 390 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g---~~ 390 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..+.| +.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~gg~~~~ 88 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH-----GSQTMPGASSS 88 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS-----SCCCCTTCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc-----CCccCCCCCcc
Confidence 3568999999999999999999999999999999876 4679999999999999999884 788887 99
Q ss_pred EEEEEcCChhHH
Q 043731 391 AVLEPVTGEAEK 402 (498)
Q Consensus 391 ~~v~~~~g~~E~ 402 (498)
|.|..+..+.++
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999876543
No 225
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=6.7e-12 Score=105.92 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=68.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .|||+|.++++|++|++.|+ |..|+|+.|.|..+..
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~--~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--YAFIHFDERDGAVKAMEEMN-----GKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS--CEEEEESSHHHHHHHHHHHT-----TEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--EEEEEeCCHHHHHHHHHHHC-----CCccCCCEEEEEEcCC
Confidence 4457999999999999999999999999999998865 99999999999999999884 8999999999999866
Q ss_pred hhH
Q 043731 399 EAE 401 (498)
Q Consensus 399 ~~E 401 (498)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 226
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.30 E-value=2.3e-12 Score=108.64 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=67.3
Q ss_pred cceeeeccCCCc------cccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEe
Q 043731 319 KTSIDTYKDNMD------VVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSV 386 (498)
Q Consensus 319 ~~~~vfv~nL~~------~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i 386 (498)
...+|||+|||. .+++++|+++|++||.|..|.++++ ++.|||.|.++++|++|+..|+ |..|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-----GKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-----Cccc
Confidence 345799999999 9999999999999999999998754 3569999999999999999884 8999
Q ss_pred cC-eEEEEEEcCC
Q 043731 387 KN-FIAVLEPVTG 398 (498)
Q Consensus 387 ~g-~~~~v~~~~g 398 (498)
+| +.|.|..+..
T Consensus 80 ~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 80 DLKHRLFLYTMKD 92 (100)
T ss_dssp SSSCBCEEEESHH
T ss_pred CCCeEEEEEECch
Confidence 99 9999999864
No 227
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.29 E-value=6.4e-12 Score=102.43 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=62.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++. + +..|+|+.|.|
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~--~~~~~g~~i~v 84 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ----K--EHRLDGRVIDP 84 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS----S--CEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh----C--CCEECCEEEEE
Confidence 4578999999999999999999999999999987653 4699999999999999864 3 77899999999
Q ss_pred EEc
Q 043731 394 EPV 396 (498)
Q Consensus 394 ~~~ 396 (498)
+.+
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 228
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=5.7e-12 Score=106.57 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=69.6
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.+. | |..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~--~~~~~g~~l 89 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC--H--STHLYGRRL 89 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHH--T--CCBSSSCBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhc--c--CCeECCCEE
Confidence 3457999999999999999999999999999999877 5679999999999999999872 2 899999999
Q ss_pred EEEEcCChh
Q 043731 392 VLEPVTGEA 400 (498)
Q Consensus 392 ~v~~~~g~~ 400 (498)
.|..+..+.
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999987643
No 229
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.29 E-value=3.4e-12 Score=105.00 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=67.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
....|||+|||..+++++|+++|++||.|..|.+.+. ++.|||+|.++++|++|++.|+ |..|+|+.|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN-----GMKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT-----TCCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEE
Confidence 3457999999999999999999999999999998863 4569999999999999999884 889999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+...
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 88653
No 230
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.7e-12 Score=108.37 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=68.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
....+||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.++ |..|+|+.|.|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~ 102 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH-----GTVVEGRKIEVN 102 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEE
Confidence 3457999999999999999999999999999998765 5679999999999999999884 899999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+..+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 88653
No 231
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.5e-12 Score=112.88 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=68.0
Q ss_pred ceEEeccC----CCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCC----HHH----HHHHHH----hCC
Q 043731 114 RTIAATPL----EYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFST----EED----AEKVLK----QGL 177 (498)
Q Consensus 114 rtV~V~nL----p~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s----~e~----A~kAl~----~~~ 177 (498)
..|||+|| |+++++.+|+++|++||+|.++.++.|+. |+.++|||||+|.+ +++ |.+|+. ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-TCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 99999999999999999999999999987 78999999999996 444 788888 378
Q ss_pred eeCCeEEEEeecch
Q 043731 178 FYAGVELHLKPKKE 191 (498)
Q Consensus 178 ~~~G~~l~v~~k~d 191 (498)
.++|+.|+|..-.+
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999987643
No 232
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=107.97 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=69.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.|.|..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKPLYVAL 89 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHT-----TCBSSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEE
Confidence 457899999999999999999999999999999864 5679999999999999999884 8999999999999
Q ss_pred cCChhH
Q 043731 396 VTGEAE 401 (498)
Q Consensus 396 ~~g~~E 401 (498)
+..+.+
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 876543
No 233
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.8e-12 Score=107.63 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=67.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
..++||+|||..+++++|+++|++||.|..|.+.++++.|||+|.+.++|.+|+..++ |..|+|+.|.|..+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALA-----NFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHT-----TCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEEecc
Confidence 3578999999999999999999999999999999999999999999999999999884 999999999887654
No 234
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.29 E-value=8.3e-12 Score=105.69 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=67.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V 102 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN-----GVPLDGRPMNI 102 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEE
Confidence 4568999999999999999999999999999998855 4569999999999999999884 89999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+.+
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98753
No 235
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5.4e-12 Score=104.74 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=62.8
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEEEeec
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELHLKPK 189 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~v~~k 189 (498)
...++|||+|||+++|+++|+++|++||.|..| +.+.. ++. ||||+|.++++|.+|+.. +..++|+.|.|.+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~-~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD-KGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS-SCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC-CCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999998 33322 232 999999999999999995 78899999998765
No 236
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.29 E-value=4.3e-12 Score=106.67 Aligned_cols=75 Identities=5% Similarity=0.043 Sum_probs=64.0
Q ss_pred eeeccCCCccccHHHHHHHhccCCc--eEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGT--VKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~--V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
++||+|||+.+|+|+|+++|++||. |..|.+.++ ++.|||+|.++++|++|++.++.. ..++.|+|+.|.|
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPLKIDGKTIGV 89 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCEEETTEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCceECCEEEEE
Confidence 7899999999999999999999995 667877654 457999999999999999998521 2346899999999
Q ss_pred EEcC
Q 043731 394 EPVT 397 (498)
Q Consensus 394 ~~~~ 397 (498)
..+.
T Consensus 90 ~~Ak 93 (95)
T 2lkz_A 90 DFAK 93 (95)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9875
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=4.6e-12 Score=105.59 Aligned_cols=75 Identities=25% Similarity=0.248 Sum_probs=66.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC---------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG---------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI 390 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g---------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~ 390 (498)
...|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-----GHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-----TCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-----CCeeCCeE
Confidence 457899999999999999999999999999998753 3569999999999999999874 89999999
Q ss_pred EEEEEcCCh
Q 043731 391 AVLEPVTGE 399 (498)
Q Consensus 391 ~~v~~~~g~ 399 (498)
|.|..+...
T Consensus 80 l~V~~a~~~ 88 (98)
T 2cpf_A 80 LEVRISERA 88 (98)
T ss_dssp CEEECSSCS
T ss_pred EEEEEccCC
Confidence 999988653
No 238
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.29 E-value=6.4e-12 Score=103.99 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=66.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
...|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.|.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~ 90 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN-----GIRLYGRPINVS 90 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC-----CCEECCCEEEEE
Confidence 457999999999999999999999999999999875 3569999999999999999884 899999999998
Q ss_pred EcC
Q 043731 395 PVT 397 (498)
Q Consensus 395 ~~~ 397 (498)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 763
No 239
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=7.4e-12 Score=105.09 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=68.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 85 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTIR 85 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEEE
Confidence 3457999999999999999999999999999998764 5579999999999999999884 9999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+...
T Consensus 86 V~~a~~~ 92 (102)
T 2cqb_A 86 VNLAKPM 92 (102)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998653
No 240
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=1.1e-11 Score=102.45 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=62.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec-CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI-GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~-g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..++||+|||+.+|+++|+++|++||.|..|.+++ .++.|||.|.++++|+++ +...+.++|+.+.|..+..
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~-------~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL-------CGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH-------TTCEEEETTEEEEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH-------cCCCcccCCEEEEEEEcCC
Confidence 45799999999999999999999999999999986 478999999999999843 3346778899999999887
Q ss_pred hhHH
Q 043731 399 EAEK 402 (498)
Q Consensus 399 ~~E~ 402 (498)
+.++
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 6543
No 241
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-11 Score=101.11 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=65.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 89 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-----NKQLFGRVIK 89 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-----TEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-----CCeeCCcEEE
Confidence 3457999999999999999999999999999999764 3569999999999999999874 9999999999
Q ss_pred EEEc
Q 043731 393 LEPV 396 (498)
Q Consensus 393 v~~~ 396 (498)
|..+
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9875
No 242
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=7.4e-12 Score=105.42 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=67.6
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 86 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-----GAELDGRELR 86 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-----SCCBTTBCCE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-----CCEECCcEEE
Confidence 3457999999999999999999999999999999765 3569999999999999999884 8999999999
Q ss_pred EEEcCC
Q 043731 393 LEPVTG 398 (498)
Q Consensus 393 v~~~~g 398 (498)
|..+..
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 999864
No 243
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-12 Score=102.94 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=67.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
+..|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..|+|+.|.|
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V 79 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-----GFELAGRPMRV 79 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEEE
Confidence 4578999999999999999999999999999998753 479999999999999999884 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+..+
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 988653
No 244
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.8e-11 Score=101.15 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=66.4
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.|+ |..|+|+.|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 88 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGRRIR 88 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCEEEE
Confidence 34579999999999999999999999999999997653 469999999999999999884 9999999999
Q ss_pred EEEcC
Q 043731 393 LEPVT 397 (498)
Q Consensus 393 v~~~~ 397 (498)
|..+.
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 98764
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=4e-12 Score=108.03 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=70.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCc-eEEEEee-------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGT-VKFIDFK-------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI 390 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~-V~~V~~~-------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~ 390 (498)
...++||+|||..+++++|+++|++||. |..|.+. +.++.|||+|.++++|++|+..| +.|+..++|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l---~~g~~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL---MPGRIQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT---TTCCSCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh---hCCCceecCCe
Confidence 3457999999999999999999999998 9999987 45678999999999999999877 34459999999
Q ss_pred EEEEEcCChhH
Q 043731 391 AVLEPVTGEAE 401 (498)
Q Consensus 391 ~~v~~~~g~~E 401 (498)
|.|..+..+.+
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999876544
No 246
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.27 E-value=8.7e-12 Score=106.78 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=68.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
....+||+|||..+++++|+++|++||.|..|.+. ++.|||+|.+.++|++|+..|+ |..|+|+.|.|..+..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVH-----GKSFANQPLEVVYSKL 102 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEESCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEecC
Confidence 34579999999999999999999999999999988 6799999999999999999884 8999999999998876
Q ss_pred hhH
Q 043731 399 EAE 401 (498)
Q Consensus 399 ~~E 401 (498)
...
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 247
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=107.11 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=68.8
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecC-CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChh
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEA 400 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~ 400 (498)
++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..++|+.|.|..+....
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD-----GKVICGSRVRVELSTGMP 76 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHH-----HSCSSSCCCEEEESSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHC-----CCeECCcEEEEEEccCCC
Confidence 5899999999999999999999999999999886 8899999999999999999985 788999999999997754
No 248
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.27 E-value=1.5e-11 Score=105.14 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=68.5
Q ss_pred cccceEEeccCCC-----CCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 111 LDVRTIAATPLEY-----DVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 111 ~~~rtV~V~nLp~-----~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
...++|+++|+.. +.++++|++.|++||.|.+|+|++++..+++++|+|||+|.++++|.+|+.. +..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2478999999999999999999987543457899999999999999999984 89999999
Q ss_pred EEEeecc
Q 043731 184 LHLKPKK 190 (498)
Q Consensus 184 l~v~~k~ 190 (498)
|.|.+..
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9998864
No 249
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.1e-11 Score=105.57 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=67.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC---CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG---AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g---~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
..+|||+|||..+++++|+++|++||.|..|.+..+ ++.|||+|.++++|++|++.|+ +..|+|+.|.|..+
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD-----GYDYDGYRLRVEFP 96 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT-----TCEETTEECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEc
Confidence 457999999999999999999999999999998765 4589999999999999999884 89999999999988
Q ss_pred CC
Q 043731 397 TG 398 (498)
Q Consensus 397 ~g 398 (498)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 250
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.5e-12 Score=106.15 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=72.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.+ + |..|+|+.|.|.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l---~--g~~~~g~~l~v~ 83 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL---N--GREFSGRALRVD 83 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS---S--SBSCSSSCBEEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh---C--CCeeCCcEEEEE
Confidence 47899999999999999999999999999998765 457999999999999999987 4 899999999999
Q ss_pred EcCChhHHHHHH
Q 043731 395 PVTGEAEKEYWS 406 (498)
Q Consensus 395 ~~~g~~E~e~~~ 406 (498)
.+..+..++..+
T Consensus 84 ~a~~~~~~~~~~ 95 (104)
T 1p1t_A 84 NAASEKNKEELK 95 (104)
T ss_dssp ETTCTTHHHHHH
T ss_pred eCCCccchhhhc
Confidence 998877776544
No 251
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.6e-12 Score=108.55 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=64.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+|||+|||+.+|+++|+++|++||.|..|.++++ ++.|||.|.++++|++|++ + + |..|+|+.|.|.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~---~--~~~~~gr~l~V~ 84 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-T---P--GQKYKETDLLIL 84 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-S---S--CCCCTTTTCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-c---C--CCEECCEEEEEE
Confidence 357899999999999999999999999999999863 5679999999999999987 4 4 899999999999
Q ss_pred EcC
Q 043731 395 PVT 397 (498)
Q Consensus 395 ~~~ 397 (498)
...
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 643
No 252
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=6.8e-12 Score=107.63 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=67.9
Q ss_pred ceeeeccCCCccccHHHHH---HHhccCCceEEEEeecCC---------ceEEEEeCCHHHHHHHHHHHhhcccCCeEec
Q 043731 320 TSIDTYKDNMDVVMREDLK---SVFHKFGTVKFIDFKIGA---------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVK 387 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLk---e~F~~fG~V~~V~~~~g~---------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~ 387 (498)
..+|||+|||..+++++|+ ++|++||.|..|.+.++. +.|||+|.++++|++|++.|+ |..|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-----g~~~~ 89 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-----NVVVD 89 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-----TEEET
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-----CCEEC
Confidence 4478999999999999999 999999999999998654 479999999999999999984 99999
Q ss_pred CeEEEEEEcCCh
Q 043731 388 NFIAVLEPVTGE 399 (498)
Q Consensus 388 g~~~~v~~~~g~ 399 (498)
|+.|.|..+..+
T Consensus 90 gr~l~V~~a~~k 101 (111)
T 2cpi_A 90 GRTLKASLGTTK 101 (111)
T ss_dssp TEEEEEESCCCC
T ss_pred CEEEEEEecccc
Confidence 999999988654
No 253
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.27 E-value=1.1e-11 Score=106.51 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=68.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V 89 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGRQIRT 89 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEE
Confidence 4579999999999999999999999999999998763 569999999999999999874 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+..+
T Consensus 90 ~~a~~~ 95 (115)
T 2dgo_A 90 NWATRK 95 (115)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 998654
No 254
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.26 E-value=5.4e-12 Score=108.01 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=68.7
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....+||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~i~g~~l~ 99 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-----GFELAGRPMK 99 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 4568999999999999999999999999999998754 3579999999999999999884 8999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+..+.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99887653
No 255
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.26 E-value=1.4e-11 Score=103.31 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=66.3
Q ss_pred ceeeeccCCCc-cccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..++||+|||. .+++++|+++|++||.|..|.+. ++.|||+|.+.++|.+|+..++ |..++|+.|.|+.+.+
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXES-----QEMNFGKKLILEVSSS 94 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHT-----TSEETTEECEEEECCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEecCC
Confidence 45799999998 99999999999999999999986 5699999999999999999884 8999999999998865
No 256
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.26 E-value=9e-12 Score=103.48 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=70.1
Q ss_pred ceeeeccCCCccccHHHHH----HHhccCCceEEEEee---cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLK----SVFHKFGTVKFIDFK---IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLk----e~F~~fG~V~~V~~~---~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+.++||+|||..+++++|+ ++|++||.|..|.+. +..+.|||+|.++++|.+|+..++ |..|+|+.|.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 82 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ-----GFPFYDKPMR 82 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhC-----CCEECCcEEE
Confidence 4578999999999999999 999999999999987 456789999999999999999884 8999999999
Q ss_pred EEEcCChhHH
Q 043731 393 LEPVTGEAEK 402 (498)
Q Consensus 393 v~~~~g~~E~ 402 (498)
|..+..+.+.
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999776543
No 257
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1e-11 Score=105.69 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=68.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhh-cccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVL-AQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~-~n~~g~~i~g~~~~ 392 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.+.++|.+|++.++. ...+|..|+|+.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 457899999999999999999999999999999854 56799999999999999998720 01228999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+..+.
T Consensus 95 v~~a~~~~ 102 (111)
T 1x4h_A 95 VDLAVTRD 102 (111)
T ss_dssp EECCCCCC
T ss_pred EEECCCCc
Confidence 99886643
No 258
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.6e-12 Score=104.55 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=67.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEE-EeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFI-DFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V-~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...|||+|||..+++++|+++|++||.|..| .+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 79 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-----GQYLCNRPIT 79 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 4578999999999999999999999999888 77764 5679999999999999999873 8999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+..+
T Consensus 80 v~~a~~~ 86 (96)
T 1x5t_A 80 VSYAFKK 86 (96)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 9998654
No 259
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.26 E-value=1.9e-11 Score=104.12 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=68.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|.+|+..|+ |..|+|+.|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~ 99 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQTIQ 99 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCcEEE
Confidence 4568999999999999999999999999999999765 3679999999999999999884 8999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+..+
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9987543
No 260
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.7e-11 Score=102.32 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|| ++|+++|+++|++||.|..|+|. .++|||||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999996 89999999999999999999984 2579999999999999999974 7889999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 84 a~ 85 (97)
T 1x5p_A 84 AR 85 (97)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.26 E-value=9e-12 Score=105.81 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred ceeeeccCCCccc------cHHHHHHHhccCCceEEEEeec----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe
Q 043731 320 TSIDTYKDNMDVV------MREDLKSVFHKFGTVKFIDFKI----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF 389 (498)
Q Consensus 320 ~~~vfv~nL~~~v------t~EdLke~F~~fG~V~~V~~~~----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~ 389 (498)
..++||+|||..+ ++++|+++|++||.|..|.+.+ .++.|||+|.++++|.+|+..| | |..|+|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l---~--g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA---D--GYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHC---S--SEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHh---C--CcccCCC
Confidence 4579999999999 8899999999999999999873 3578999999999999999987 4 9999998
Q ss_pred -EEEEEEcCC
Q 043731 390 -IAVLEPVTG 398 (498)
Q Consensus 390 -~~~v~~~~g 398 (498)
.|.|..+..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999998865
No 262
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.26 E-value=8.8e-12 Score=132.01 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=72.4
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
...++|||+|||+++|+++|.++|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+||.. +..|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3458999999999999999999999999999999998865 677999999999999999999974 8899999999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
+.
T Consensus 179 a~ 180 (437)
T 3pgw_S 179 ER 180 (437)
T ss_pred eC
Confidence 64
No 263
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.5e-11 Score=103.56 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=67.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.++ |..|+|+.|.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v 89 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-----GFGYDHLILNV 89 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-----CCeeCCcEEEE
Confidence 4579999999999999999999999999999998763 469999999999999999874 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+..+
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998654
No 264
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.3e-11 Score=104.28 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=67.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 96 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQPIS 96 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-----TCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-----CCEECCcEEE
Confidence 3567999999999999999999999999999999765 3569999999999999999884 8899999999
Q ss_pred EEEcCC
Q 043731 393 LEPVTG 398 (498)
Q Consensus 393 v~~~~g 398 (498)
|..+..
T Consensus 97 V~~a~~ 102 (106)
T 1p27_B 97 VDWCFV 102 (106)
T ss_dssp EEESEE
T ss_pred EEeecC
Confidence 998754
No 265
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.7e-12 Score=104.18 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=65.6
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEE-cccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEee
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVR-LPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKP 188 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vr-i~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~ 188 (498)
..++|||+|||+++|+++|+++|++||.|..|+ |+++.. .|.|||+|.+.++|.+|+.. +..++|+.|.|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-----~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-----TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-----SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 468999999999999999999999999999995 777643 24499999999999999984 8889999999987
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
..
T Consensus 89 a~ 90 (96)
T 2e44_A 89 IP 90 (96)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 266
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.3e-11 Score=104.06 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=68.4
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.| + |..|+|+.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l---~--g~~~~g~~l~ 88 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM---D--MIKLYGKPIR 88 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS---S--SCBCSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh---C--CCeECCeEEE
Confidence 34579999999999999999999999999999998754 47999999999999999987 3 8999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+..+
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9998664
No 267
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.25 E-value=1e-11 Score=106.74 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=67.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V 99 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-----GFQIGMKRLKV 99 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 3478999999999999999999999999999988765 469999999999999999884 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+..+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 988654
No 268
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=102.62 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=67.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++ + + |..|+|+.|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~---~--~~~~~g~~l~ 82 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M---H--FHDIMGKKVE 82 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H---C--CCBSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h---C--CCEECCeEEE
Confidence 3457999999999999999999999999999999764 4679999999999999998 6 4 8899999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+..+.
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99987643
No 269
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.25 E-value=6.3e-12 Score=108.70 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
...+|||+|||+++|+++|+++|++||.|..|.|+++ |||||+|.+.++|++|++. +..++|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4689999999999999999999999999999999764 9999999999999999994 78899988
No 270
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.24 E-value=8.4e-12 Score=108.17 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=68.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC-----ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA-----ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~-----~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.+.++|++|++.+ | |..|+|+.|.|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l---~--g~~~~g~~l~V~ 81 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM---N--GKSLHGKAIKVE 81 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC---S--SCBCSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh---C--CCEECCEEEEEE
Confidence 3478999999999999999999999999999998754 77999999999999999987 4 899999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+...
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 271
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=103.88 Aligned_cols=74 Identities=20% Similarity=0.040 Sum_probs=67.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|+|+.|.|.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~ 89 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN-----GQLLFDRPMHVK 89 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCEeCCCEEEEE
Confidence 457999999999999999999999999999998875 4569999999999999999884 899999999999
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
.+..
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 8754
No 272
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.24 E-value=1.3e-11 Score=100.73 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=64.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|+ .+ + |..|+|+.|.|.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~---~--g~~~~g~~l~V~ 80 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL---D--ESLFRGRQIKVI 80 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG---T--TCEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc---C--CCEECCcEEEEE
Confidence 36899999999999999999999999999998865 457999999999999999 66 4 899999999999
Q ss_pred EcC
Q 043731 395 PVT 397 (498)
Q Consensus 395 ~~~ 397 (498)
.+.
T Consensus 81 ~a~ 83 (89)
T 3ucg_A 81 PKR 83 (89)
T ss_dssp ETT
T ss_pred Ecc
Confidence 874
No 273
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.6e-12 Score=105.34 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=66.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCc-eEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCC-eEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGT-VKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGG-LSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~-V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g-~~i~g~~~~v~~~ 396 (498)
...+|||+|||..+++++|+++|++||. |..+.+ +.++.|||+|.++++|++|++.++ | ..|+|+.|.|..+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLS-----GKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHT-----TTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHcc-----CCeeECCEEEEEEEc
Confidence 3457999999999999999999999999 666555 457899999999999999999884 7 9999999999998
Q ss_pred CChh
Q 043731 397 TGEA 400 (498)
Q Consensus 397 ~g~~ 400 (498)
..+.
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7643
No 274
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=2.4e-11 Score=101.63 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=66.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccC--CceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKF--GTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~f--G~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
..++||+|||..+++++|+++|++| |.|..|.+.+ +.|||+|.++++|++|+..|+ |..|+|+.|.|..+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~--g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR--DYAFVHFSNREDAVEAMKALN-----GKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS--SEEEEEESSHHHHHHHHHHHS-----SEEETTEEEEEECCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC--CeEEEEeCCHHHHHHHHHHhC-----CCEeCCcEEEEEECC
Confidence 4579999999999999999999999 8999998775 499999999999999999884 999999999999886
Q ss_pred Ch
Q 043731 398 GE 399 (498)
Q Consensus 398 g~ 399 (498)
..
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 275
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.24 E-value=1.2e-11 Score=105.91 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=66.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.+ +..|+|+.|.|
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~------~~~l~g~~l~V 98 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS------RHELDSKTIDP 98 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS------CEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC------CCcCCCEEEEE
Confidence 447899999999999999999999999999999765 457999999999999998864 69999999999
Q ss_pred EEcCChh
Q 043731 394 EPVTGEA 400 (498)
Q Consensus 394 ~~~~g~~ 400 (498)
..+....
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9986543
No 276
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.24 E-value=1.4e-11 Score=101.04 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=67.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..++||+|||..+++++|+++|++| .|..|.+.+.++.|||+|.++++|++|++.++ |..++|+.+.|+.+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH-----QYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHT-----TEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEEEEcCC
Confidence 3478999999999999999999999 99999888888999999999999999999884 9999999999998754
No 277
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9e-12 Score=103.40 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEE-eecCCce--EEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFID-FKIGAES--GYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~-~~~g~~~--GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
..++||+|||..+++++|+++|++||.|..|. +.++..+ |||+|.++++|++|+..++ |..|+|+.|.|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~V~~a 89 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN-----GFQLENFTLKVAYI 89 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHT-----TCBCSSCBCEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEc
Confidence 45799999999999999999999999999994 7765544 9999999999999999884 89999999999998
Q ss_pred CCh
Q 043731 397 TGE 399 (498)
Q Consensus 397 ~g~ 399 (498)
..+
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 764
No 278
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-11 Score=100.89 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=66.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..+|||+|| .+++++|+++|++||.|..|.+.+.++.|||+|.++++|.+|+..|+ |..|+|+.|.|..+..+
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELN-----GTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTT-----TEEETTEEEEEECCSSC
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEEECCCC
Confidence 457899996 89999999999999999999999999999999999999999999874 89999999999988653
No 279
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=103.47 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=65.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE--------EEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF--------IDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--------V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
...+||+|||..+++++|+++|++||.|.. |.+.++ ++.|||+|.+.++|++|++.++ |..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~-----g~~ 87 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-----GKE 87 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT-----TCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCE
Confidence 457999999999999999999999999998 888765 3469999999999999999884 889
Q ss_pred ecCeEEEEEEcC
Q 043731 386 VKNFIAVLEPVT 397 (498)
Q Consensus 386 i~g~~~~v~~~~ 397 (498)
|+|+.|.|+.+.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998763
No 280
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.23 E-value=1.7e-11 Score=106.97 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=68.7
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+|+++|+++|++||.|..|.+.++ .+.|||.|.++++|++|++.|+ |..|+|+.|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 95 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQPIS 95 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-----TCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCeEEE
Confidence 3558999999999999999999999999999999866 5679999999999999999884 8999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+..+
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9988543
No 281
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.23 E-value=3.4e-12 Score=105.17 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=62.1
Q ss_pred eeeccCCCccccHHHHHHHhccCC--ceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFG--TVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG--~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
++||+|||..+++++|+++|++|| .|..|.+.++. +.|||.|.++++|++|++.++ |..|+|+.|.|
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~i~V 77 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQNPVV 77 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-----GSCSSSCCCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-----CCeeCCEEEEE
Confidence 579999999999999999999999 89998887653 459999999999999999884 88999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 887654
No 282
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.3e-11 Score=107.46 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=61.8
Q ss_pred ccceEEe--ccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCee-----CCe
Q 043731 112 DVRTIAA--TPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFY-----AGV 182 (498)
Q Consensus 112 ~~rtV~V--~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~-----~G~ 182 (498)
..++||| +|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.++++|++|++. +..+ .|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 4688999 779999999999999999999999998742 69999999999999999985 6666 677
Q ss_pred EEEEeec
Q 043731 183 ELHLKPK 189 (498)
Q Consensus 183 ~l~v~~k 189 (498)
+|.|.+.
T Consensus 97 ~l~v~~a 103 (114)
T 2cq2_A 97 TLYLNFV 103 (114)
T ss_dssp ECEEEEE
T ss_pred EEEEEec
Confidence 8877664
No 283
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.8e-11 Score=103.31 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=66.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
..+|||+|||..+++++|+++|++|| |..|.+.++ .+.|||+|.++++|++|+ .+ + |..|+|+.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l---~--g~~~~g~~l~ 87 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL---N--EESLGNKRIR 87 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GG---G--TCEETTEECE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hc---C--CCEeCCcEEE
Confidence 45899999999999999999999999 999998765 346999999999999999 76 3 8999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+..+.
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987643
No 284
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.23 E-value=1.3e-11 Score=104.27 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=67.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEe---cCe
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSV---KNF 389 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i---~g~ 389 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|.+|++.|+ |..+ .|+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~~g~ 86 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-----EQKTLPGMNR 86 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-----TTCCCTTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCcccCCCCc
Confidence 4568999999999999999999999999999999774 4579999999999999999884 6666 889
Q ss_pred EEEEEEcCChh
Q 043731 390 IAVLEPVTGEA 400 (498)
Q Consensus 390 ~~~v~~~~g~~ 400 (498)
.|.|..+..+.
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99999987643
No 285
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=104.59 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=66.5
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|+ .+ | |..|+|+.|.|.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l---~--g~~~~g~~l~V~ 99 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL---T--GQRLLGVPIIVQ 99 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH---T--TEEETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc---C--CCEeCCeEEEEE
Confidence 47899999999999999999999999999999753 457999999999999999 77 4 999999999999
Q ss_pred EcCChhH
Q 043731 395 PVTGEAE 401 (498)
Q Consensus 395 ~~~g~~E 401 (498)
.+..+..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 8765443
No 286
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=103.31 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=67.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++. . |..|+|+.|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-----~~~~~g~~l~ 88 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-----PHTLDGRNID 88 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-----SEEETTEEEB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-----CCeECCEEEE
Confidence 34579999999999999999999999999999998763 4699999999999999876 3 9999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+..+.
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99886543
No 287
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.22 E-value=2.7e-11 Score=110.79 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=69.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCC--ceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFG--TVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG--~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
..+|||+|||+.+++++|+++|++|| .|..|.+.++ ++.|||.|.++++|++|++.|+ |..|+|+.|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-----g~~~~Gr~l 129 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-----GKVLNGEKV 129 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-----TCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeEe
Confidence 45799999999999999999999999 9999998755 3469999999999999999883 999999999
Q ss_pred EEEEcCChhHHH
Q 043731 392 VLEPVTGEAEKE 403 (498)
Q Consensus 392 ~v~~~~g~~E~e 403 (498)
.|..+..+....
T Consensus 130 ~V~~a~~~~~~~ 141 (156)
T 3n9u_C 130 DVRPATRQNLSQ 141 (156)
T ss_dssp EEEECCHHHHHH
T ss_pred EEEEcCCCcchh
Confidence 999998765443
No 288
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.1e-11 Score=104.08 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=67.9
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|.+|++.|+ |..|+|+.|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 85 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-----GKSVDGRQIR 85 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-----TCCTTSCCCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 3457999999999999999999999999999999764 4579999999999999999884 8899999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+...
T Consensus 86 v~~a~~~ 92 (102)
T 1x5s_A 86 VDQAGKS 92 (102)
T ss_dssp EEEEECC
T ss_pred EEECCCC
Confidence 9988654
No 289
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.22 E-value=1.7e-11 Score=105.77 Aligned_cols=72 Identities=24% Similarity=0.215 Sum_probs=65.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.+ | |..|+|+.|.|
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l---~--g~~~~g~~l~V 114 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM---N--GFQVGTKRLKV 114 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC---C--CCEETTEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc---C--CCEECCEEEEE
Confidence 457999999999999999999999999999999765 457999999999999999987 4 89999999999
Q ss_pred EEc
Q 043731 394 EPV 396 (498)
Q Consensus 394 ~~~ 396 (498)
+.+
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 865
No 290
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.22 E-value=3.2e-11 Score=106.56 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=65.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.++ |..|+|+.|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 136 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTIR 136 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-----EEEETTEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCEECCEEEE
Confidence 3458999999999999999999999999999999765 5679999999999999999873 8999999999
Q ss_pred EEEc
Q 043731 393 LEPV 396 (498)
Q Consensus 393 v~~~ 396 (498)
|+.+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9764
No 291
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=104.29 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=68.0
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceE--------EEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCe
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVK--------FIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGL 384 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~--------~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~ 384 (498)
...+|||+|||..+++++|+++|++||.|. .|.+.++ .+.|||+|.++++|++|++.|+ |.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~ 88 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD-----GK 88 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT-----TC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC-----CC
Confidence 345799999999999999999999999998 5887765 4579999999999999999884 89
Q ss_pred EecCeEEEEEEcCChh
Q 043731 385 SVKNFIAVLEPVTGEA 400 (498)
Q Consensus 385 ~i~g~~~~v~~~~g~~ 400 (498)
.|+|+.|.|..+....
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999987644
No 292
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.22 E-value=5.6e-12 Score=99.88 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=60.9
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
+||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++ + + |..|+|+.+.|+.+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~---~--~~~~~g~~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I---H--FHEINNKMVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-S---S--CCCSSSCCCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-C---C--CCEECCEEEEEEeC
Confidence 6999999999999999999999999999987654 579999999999999976 4 4 89999999998754
No 293
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.1e-11 Score=103.24 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=67.0
Q ss_pred cceeeeccCCCc-cccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 319 KTSIDTYKDNMD-VVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 319 ~~~~vfv~nL~~-~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
...++||+|||. .+++++|+++|++||.|..|.++ ++.|||+|.++++|++|++.+. |..+.|+.|.|..+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECES-----QEMNFGKKLILEVSS 81 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHT-----CSSCBTTTBCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcC-----CCeeCCcEEEEEEcC
Confidence 345799999998 99999999999999999999997 5699999999999999999884 889999999999885
Q ss_pred Ch
Q 043731 398 GE 399 (498)
Q Consensus 398 g~ 399 (498)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 294
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.21 E-value=3e-11 Score=107.47 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=63.4
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccce-EEEEeCCHHHHHHHHHh--CCeeCC--eEEEEe
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGT-ALIEFSTEEDAEKVLKQ--GLFYAG--VELHLK 187 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~-aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v~ 187 (498)
.-.|||+|||+.+|+++|+++|++||.|..|+|... .+|+ |||+|.+.++|.+|++. +..+.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 357899999999999999999999999999998753 2577 99999999999999995 788877 889988
Q ss_pred ecc
Q 043731 188 PKK 190 (498)
Q Consensus 188 ~k~ 190 (498)
+++
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 764
No 295
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.21 E-value=6.1e-12 Score=101.49 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=59.9
Q ss_pred eeeeccCCCccc------cHHHHHHHhccCCceEEEEeec----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCe-
Q 043731 321 SIDTYKDNMDVV------MREDLKSVFHKFGTVKFIDFKI----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNF- 389 (498)
Q Consensus 321 ~~vfv~nL~~~v------t~EdLke~F~~fG~V~~V~~~~----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~- 389 (498)
.++||+|||..+ ++++|+++|++||.|..|.+.+ .++.|||+|.++++|++|+..| | |..|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l---n--g~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA---D--GYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTS---S--SCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHh---c--CcccCCce
Confidence 368999999999 7899999999999999999874 3577999999999999999987 3 8889998
Q ss_pred EEEE
Q 043731 390 IAVL 393 (498)
Q Consensus 390 ~~~v 393 (498)
.|.|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 7654
No 296
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.21 E-value=3.2e-11 Score=105.13 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=68.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.+.++|++|+..++ |..|+|+.|.|
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 108 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-----GVPLDGRPMDI 108 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT-----TEESSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC-----CCEECCcEEEE
Confidence 4568999999999999999999999999999998764 5679999999999999999884 89999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+..
T Consensus 109 ~~a~~ 113 (124)
T 2kt5_A 109 QLVAS 113 (124)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98865
No 297
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=102.35 Aligned_cols=75 Identities=12% Similarity=0.047 Sum_probs=66.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceE-EEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE-
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVK-FIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI- 390 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~-~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~- 390 (498)
...++||+|||..+++++|+++|++||.|. .|.+.++. +.|||+|.++++|++|++.| | |..|.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l---~--g~~~~g~~~ 82 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI---N--GKPLPGATP 82 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT---T--TSEESSCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH---c--CCccCCCCc
Confidence 345799999999999999999999999999 99988764 56999999999999999987 3 89999999
Q ss_pred ---EEEEEcCC
Q 043731 391 ---AVLEPVTG 398 (498)
Q Consensus 391 ---~~v~~~~g 398 (498)
+.|..+..
T Consensus 83 ~~~l~v~~a~~ 93 (99)
T 2div_A 83 AKRFKLNYATY 93 (99)
T ss_dssp CEECCEEETTC
T ss_pred ceeEEEeecCC
Confidence 88887754
No 298
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.20 E-value=1.7e-11 Score=99.59 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=64.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccC----C-------ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKF----G-------TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN 388 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~f----G-------~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g 388 (498)
..++||+|||..+++++|+++|++| | .|..+.+.++++.|||+|.++++|.+|+ .+ | |..|+|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l---~--g~~~~g 79 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AF---D--GIIFQG 79 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GG---T--TCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hc---C--CCEECC
Confidence 3478999999999999999999999 8 9999999999999999999999999999 77 4 999999
Q ss_pred eEEEEEE
Q 043731 389 FIAVLEP 395 (498)
Q Consensus 389 ~~~~v~~ 395 (498)
+.+.|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9998863
No 299
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=9.3e-12 Score=103.72 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=63.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...|||+|||..+++++|+++|++||.|..+.+.+. .+.|||+|.++++|++|++.++ |..|+|+.|.|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~V 89 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVKL 89 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEE
Confidence 457999999999999999999999999865444332 4569999999999999999874 89999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
+.+.+
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99865
No 300
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=108.74 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=69.3
Q ss_pred ceeeeccCCCccccHHHHH----HHhccCCceEEEEeec---CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLK----SVFHKFGTVKFIDFKI---GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLk----e~F~~fG~V~~V~~~~---g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
+.+|||+|||+.+++++|+ ++|++||.|..|.+.+ .++.|||.|.++++|.+|+..|+ |..|.|+.|.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ln-----g~~l~gr~l~ 103 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ-----GYPFQGNPLV 103 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHST-----TCCCTTSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHC-----CCEeCCCEEE
Confidence 4579999999999999877 6999999999988864 46789999999999999999884 8999999999
Q ss_pred EEEcCChhHHH
Q 043731 393 LEPVTGEAEKE 403 (498)
Q Consensus 393 v~~~~g~~E~e 403 (498)
|..+..+.+..
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998766543
No 301
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.7e-11 Score=100.45 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=66.7
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|+.. +..|+|+.|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-------~~~~~g~~l~ 86 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-------RHMIDGRWCD 86 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-------CEEETTEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-------CCeeCCeEEE
Confidence 34579999999999999999999999999999998764 4699999999999999872 7899999999
Q ss_pred EEEcCChhH
Q 043731 393 LEPVTGEAE 401 (498)
Q Consensus 393 v~~~~g~~E 401 (498)
|+.+..+.+
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999876543
No 302
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=7.6e-12 Score=99.36 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=62.1
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.+ +..++|+.+.|+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~------~~~~~g~~l~v~~ 75 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS------RHELDSKTIDPKV 75 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT------TCCCSSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC------CCccCCEEEEEEe
Confidence 5799999999999999999999999999998765 357999999999999999875 3889999999987
Q ss_pred c
Q 043731 396 V 396 (498)
Q Consensus 396 ~ 396 (498)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 303
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.19 E-value=1.6e-11 Score=108.92 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=68.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|.+|++.++ |..|+|+.|.|
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 116 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-----GFNILNKRLKV 116 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-----TEECSSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 457999999999999999999999999999998765 3469999999999999999874 99999999999
Q ss_pred EEcCChhH
Q 043731 394 EPVTGEAE 401 (498)
Q Consensus 394 ~~~~g~~E 401 (498)
..+.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.19 E-value=1.5e-11 Score=106.35 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=64.3
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE-----EEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI-----AVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~-----~~v~~ 395 (498)
..|||+|||..+++++|+++|++||.|..|.+..+ +.|||+|.++++|++|++.|+ |..|+|+. +.|..
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHT-----TCBCCCTTSCCCBCEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhC-----CCEECCcEeeeEEEEecc
Confidence 47899999999999999999999999999999887 899999999999999999984 88899987 66665
Q ss_pred cCC
Q 043731 396 VTG 398 (498)
Q Consensus 396 ~~g 398 (498)
...
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 305
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.19 E-value=2.1e-11 Score=107.88 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=66.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-----g~~i~g~~l~V 120 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGRRIRV 120 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEE
Confidence 457899999999999999999999999999999754 4579999999999999999884 89999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+..
T Consensus 121 ~~a~~ 125 (129)
T 2kxn_B 121 DFSIT 125 (129)
T ss_dssp SCCSS
T ss_pred EEecC
Confidence 88754
No 306
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=101.44 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=65.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEe--ecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDF--KIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~--~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
...|||+|||..+++++|+++|++||.|. +.+ .+.++.|||+|.++++|++|+..|+ |..|+|+.|.|..+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQ-----GLRLGTDTLRVALAR 92 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHT-----TCCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEcC
Confidence 44799999999999999999999999985 344 3567899999999999999999884 899999999999986
Q ss_pred Ch
Q 043731 398 GE 399 (498)
Q Consensus 398 g~ 399 (498)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 307
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.19 E-value=1.2e-11 Score=102.36 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=63.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
+..|||+|||..+++++|+++|++||.|..+.+.+ ..+.|||+|.++++|++|++.++ |..|+|+.|.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEE
Confidence 45799999999999999999999999987655543 23569999999999999999884 89999999999
Q ss_pred EEcC
Q 043731 394 EPVT 397 (498)
Q Consensus 394 ~~~~ 397 (498)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 308
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=100.83 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=62.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCc-eEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAE-SGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~-~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
...|||+|||..+++++|+++|++||.|..|.+.+..+ .|||+|.++++|++|++ + + |..|+|+.|.|+.+..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l---~--g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-Q---S--QHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-C---S--CCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-c---C--CeEECCEEEEEEECCc
Confidence 34799999999999999999999999999884433222 79999999999999998 7 4 9999999999987643
No 309
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.19 E-value=2.8e-11 Score=105.94 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=64.6
Q ss_pred eecccCCcchhhhhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHH
Q 043731 95 VGRSAELPTAEEMKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLK 174 (498)
Q Consensus 95 VrR~~~~~~~ee~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~ 174 (498)
.+|..+.+... .....++|||+|| ++|+++|+++|++||.|..|+|. .++|||||+|.+.++|.+|+.
T Consensus 24 ~~r~~~~~~~~---~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 24 FRRSDSFPERR---APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp --------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCCCCCCCC---CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHH
Confidence 34444444322 2356789999996 69999999999999999999985 257999999999999999997
Q ss_pred h--CCeeCCeEEEEeecc
Q 043731 175 Q--GLFYAGVELHLKPKK 190 (498)
Q Consensus 175 ~--~~~~~G~~l~v~~k~ 190 (498)
. +..++|+.|.|.+..
T Consensus 92 ~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp HHTTCBCSSCBCEEEECC
T ss_pred HhCCCEECCeEEEEEEeC
Confidence 4 788999999998874
No 310
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.4e-11 Score=104.69 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=68.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCce-EEEEeec-----CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTV-KFIDFKI-----GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V-~~V~~~~-----g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||+.+++++|+++|++||.| ..|.+.+ .++.|||+|.++++|++|++. + |..|+|+.|.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~----~--~~~~~gr~i~v 88 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL----H--RKKLNGREAFV 88 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG----C--SEEETTEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh----C--CCccCCeEEEE
Confidence 3478999999999999999999999999 7777765 456799999999999999764 3 89999999999
Q ss_pred EEcCChhHHHH
Q 043731 394 EPVTGEAEKEY 404 (498)
Q Consensus 394 ~~~~g~~E~e~ 404 (498)
..+..++.+..
T Consensus 89 ~~a~~~~~~~~ 99 (114)
T 2cpy_A 89 HVVTLEDMREI 99 (114)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99987665553
No 311
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=4.4e-11 Score=103.89 Aligned_cols=75 Identities=9% Similarity=0.035 Sum_probs=65.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCc---eEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGT---VKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~---V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
..+|||+|||+.+|+++|+++|++||. |..|.+.++ ++.|||+|.++++|++|++ + + |..|+|+.|
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~---~--g~~~~gr~i 90 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-K---D--RESMGHRYI 90 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-G---T--TEEETTEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c---C--CCeECCeEE
Confidence 457999999999999999999999998 788887754 4469999999999999988 6 4 899999999
Q ss_pred EEEEcCChh
Q 043731 392 VLEPVTGEA 400 (498)
Q Consensus 392 ~v~~~~g~~ 400 (498)
.|..+..++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986543
No 312
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.18 E-value=3e-11 Score=103.14 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=66.0
Q ss_pred ceeeeccCCCcc-ccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDV-VMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~-vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..+|||+|||.. +++++|+++|++||.|..|.+ .++.|||+|.++++|++|+..|+ |..|+|+.|.|..+..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGEN-----GRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHT-----TCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECCC
Confidence 347999999999 999999999999999999988 46699999999999999999884 8999999999999864
No 313
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=6.4e-11 Score=99.26 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=64.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEee--cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK--IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~--~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
....|||+|||..+++++|+++|++||.|..+... +.++.|||+|.++++|++|+..+ + |..|+|+.|.|..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l---~--g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC---N--KREIEGRAIRLELQ 88 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHT---S--SEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHh---C--CCEeCCeEEEEEEc
Confidence 45689999999999999999999999998433221 23567999999999999999987 4 99999999999998
Q ss_pred CCh
Q 043731 397 TGE 399 (498)
Q Consensus 397 ~g~ 399 (498)
...
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 314
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.18 E-value=2.7e-11 Score=111.75 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=64.1
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCC--eEEEEee
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAG--VELHLKP 188 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v~~ 188 (498)
..+|||+|||+.+|+++|+++|++||.|..|+|... ..+|||||+|.+.++|++|++. +..+.| +.|+|.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 467999999999999999999999999999998532 2579999999999999999995 777754 9999988
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
++
T Consensus 121 Ak 122 (164)
T 1sjr_A 121 SK 122 (164)
T ss_dssp CS
T ss_pred ec
Confidence 74
No 315
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=103.39 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=66.9
Q ss_pred ceeeeccCCCccccHHHHHHHhcc-CCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeE-ecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHK-FGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLS-VKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~-fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~-i~g~~~~ 392 (498)
...|||+|||..+++++|+++|++ ||.|..|.+.++ .+.|||+|.++++|.+|++.++ |.. |+|+.|.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~g~~l~ 83 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ-----GAVGLGSKPVR 83 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT-----TCCSSSSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc-----CCcccCCEeEE
Confidence 457899999999999999999999 999999999875 4569999999999999999874 788 9999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|..+...
T Consensus 84 v~~a~~~ 90 (104)
T 2dhg_A 84 LSVAIPK 90 (104)
T ss_dssp CCBCCCC
T ss_pred EEEccCC
Confidence 9887553
No 316
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.18 E-value=7e-12 Score=99.18 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=61.1
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++. + +..|+|+.+.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~----~--~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K--YHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT----S--SCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh----C--CCeECCEEEEEEE
Confidence 3799999999999999999999999999998754 45799999999999999874 3 7889999998886
Q ss_pred c
Q 043731 396 V 396 (498)
Q Consensus 396 ~ 396 (498)
+
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.3e-11 Score=100.11 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=61.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+||+|||..+++++|+++|++||.|..|.+.++ .+.|||.|.++++|++|++.|+ |..|+|+.+.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~~~~ 79 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAKQ 79 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-----HHTCCEESCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-----CCeEeeEEEee
Confidence 457899999999999999999999999999998865 4579999999999999999985 67777776654
Q ss_pred E
Q 043731 394 E 394 (498)
Q Consensus 394 ~ 394 (498)
.
T Consensus 80 ~ 80 (85)
T 1x4e_A 80 S 80 (85)
T ss_dssp S
T ss_pred c
Confidence 3
No 318
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.5e-11 Score=101.85 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=66.0
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
...+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.+ + + .|+|+.|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~---~--~-~~~g~~l~ 89 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP---N--P-IIDGRKAN 89 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS---S--C-EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC---C--C-cCCCEEEE
Confidence 45589999999999999999999999999999998753 47999999999999999876 3 6 89999999
Q ss_pred EEEcCC
Q 043731 393 LEPVTG 398 (498)
Q Consensus 393 v~~~~g 398 (498)
|+.+..
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 999854
No 319
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=6e-11 Score=99.90 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=65.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...|||+|||..+++++|+++|++|| |..|.+.++. +.|||+|.++++|++|+ .+ | |..|+|+.|.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l---~--g~~~~g~~l~V 87 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY---D--GALLGDRSLRV 87 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG---T--TCEETTEECEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh---C--CCeECCeEEEE
Confidence 45799999999999999999999998 9999988664 46999999999999999 66 4 89999999999
Q ss_pred EEcCCh
Q 043731 394 EPVTGE 399 (498)
Q Consensus 394 ~~~~g~ 399 (498)
..+...
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998664
No 320
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=4.8e-11 Score=98.08 Aligned_cols=73 Identities=7% Similarity=-0.026 Sum_probs=65.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
...+||+|||..+++++|+++|++| .|..|.+.++ .+.|||+|.++++|++|+. + + |..|+|+.|.|.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~---~--g~~~~gr~i~v~ 82 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-C---N--REYMGGRYIEVF 82 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-S---C--SEEETTEEEEEE
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-h---C--CceeCCcEEEEE
Confidence 4578999999999999999999999 8999988765 3469999999999999998 7 4 999999999999
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
.+..+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98764
No 321
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.4e-11 Score=103.65 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=66.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++. + |..|+|+.|.|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~----~--~~~~~g~~l~V 100 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA----R--PHSIDGRVVEP 100 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS----C--SEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh----C--CcEECCEEEEE
Confidence 347999999999999999999999999999999875 35799999999999999764 3 99999999999
Q ss_pred EEcCChh
Q 043731 394 EPVTGEA 400 (498)
Q Consensus 394 ~~~~g~~ 400 (498)
..+..+.
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9987654
No 322
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.16 E-value=6.2e-11 Score=108.69 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=69.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||.|.++++|++|+..|+ |..|.|+.|.|
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 146 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQTIQV 146 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEE
Confidence 457999999999999999999999999999999876 4679999999999999999884 89999999999
Q ss_pred EEcCChhHH
Q 043731 394 EPVTGEAEK 402 (498)
Q Consensus 394 ~~~~g~~E~ 402 (498)
..+..+..+
T Consensus 147 ~~a~~~~~~ 155 (165)
T 1rk8_A 147 DWCFVKGPK 155 (165)
T ss_dssp EESEECC--
T ss_pred EEecCCCCC
Confidence 998665443
No 323
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=2.7e-11 Score=100.46 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEee--cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFK--IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~--~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
..++||+|||..+++++|+++|++||.|..+ .. +..+.|||+|.++++|.+|+..++ |..|+|+.|.|..+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTT-----EEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEcC
Confidence 4579999999999999999999999999887 22 234679999999999999999874 899999999999885
Q ss_pred C
Q 043731 398 G 398 (498)
Q Consensus 398 g 398 (498)
.
T Consensus 90 ~ 90 (96)
T 1fjc_A 90 E 90 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 324
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=8.8e-11 Score=103.58 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=64.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCce-EEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEEc
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES-GYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEPV 396 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~-GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~~ 396 (498)
...+||+||++.+++++|+++|++||.|..|.+.+..+. |||+|.++++|.+|+++|+ |..|.| +.|.|..+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~Ln-----G~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALN-----GADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHT-----TCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCeEEEEEEe
Confidence 346899999999999999999999999999887665575 9999999999999999984 888887 57888766
Q ss_pred CC
Q 043731 397 TG 398 (498)
Q Consensus 397 ~g 398 (498)
..
T Consensus 100 k~ 101 (124)
T 2e5i_A 100 RP 101 (124)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 325
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=5.4e-11 Score=99.74 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=58.5
Q ss_pred ceEEeccCCCCCcHHH----HHHHhccC-CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEE
Q 043731 114 RTIAATPLEYDVKRED----VEAFFSQH-VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHL 186 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~----L~~~F~~~-G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v 186 (498)
.+|||+|||++++.++ |+++|++| |+|..| ++ |+|||+|.+.++|.+|++. +..+.|++|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3499999999999888 55899999 599999 22 9999999999999999985 88999999999
Q ss_pred eecc
Q 043731 187 KPKK 190 (498)
Q Consensus 187 ~~k~ 190 (498)
...+
T Consensus 79 ~~A~ 82 (96)
T 2diu_A 79 SFTP 82 (96)
T ss_dssp ESSC
T ss_pred EecC
Confidence 8764
No 326
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=102.15 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=64.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC-------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA-------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~-------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
..++||+|||..+++++|+++|++|| |..|.+.++. +.|||+|.+.++|.+|+ .+ + |..|+|+.|.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l---~--g~~~~g~~l~ 91 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL---N--EESLGNRRIR 91 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HT---T--TCCBTTBCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hc---C--CCEECCeEEE
Confidence 34799999999999999999999999 9999987653 57999999999999999 76 4 8999999999
Q ss_pred EEEcCCh
Q 043731 393 LEPVTGE 399 (498)
Q Consensus 393 v~~~~g~ 399 (498)
|+.+...
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9988653
No 327
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.15 E-value=8.4e-11 Score=106.52 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=69.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++. +.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 113 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-----GTRLDDRIIRT 113 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TSEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 4579999999999999999999999999999997653 469999999999999999874 89999999999
Q ss_pred EEcCChhH
Q 043731 394 EPVTGEAE 401 (498)
Q Consensus 394 ~~~~g~~E 401 (498)
..+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987544
No 328
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=4.5e-11 Score=101.24 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=63.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE-EEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF-IDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~-V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...|||+|||+.+++++|+++|++||.|.. |.+..+ .+.|||+|.++++|++|+.. + +..|+|+.|.|
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~----~--~~~~~gr~i~v 88 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK----H--KERIGHRYIEI 88 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT----T--TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh----C--cchhCCcEEEE
Confidence 347899999999999999999999999987 777543 46799999999999999875 3 89999999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 88764
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=9.5e-11 Score=100.92 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=62.9
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
..|||+|||+.+++++|+++|++| .|..|.+.++ .+.|||+|.++++|++|+ .+ | |..|+|+.|.|.+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~---~--~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KR---N--RMLMIQRYVEVSP 89 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HT---T--TEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hc---C--CCeECCeEEEEEE
Confidence 479999999999999999999999 7888888753 567999999999999998 44 4 8999999999988
Q ss_pred cCC
Q 043731 396 VTG 398 (498)
Q Consensus 396 ~~g 398 (498)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 864
No 330
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.14 E-value=4.5e-11 Score=103.91 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=64.7
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
.+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.+.++|++|+ .+ + |..|+|+.|.|.
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l---~--g~~~~g~~l~V~ 110 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AM---D--ETVFRGRTIKVL 110 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TT---T--TCEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hc---C--CCeECCeEEEEE
Confidence 47899999999999999999999999999998764 457999999999999999 56 4 899999999999
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
.+..
T Consensus 111 ~a~~ 114 (124)
T 2jwn_A 111 PKRT 114 (124)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 8754
No 331
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.13 E-value=3.5e-11 Score=107.75 Aligned_cols=75 Identities=7% Similarity=0.002 Sum_probs=65.5
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCc---eEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGT---VKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~---V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
..+|||+|||+.+|+++|+++|++||. |..|.+.++ ++.|||+|.++++|++|++ + | |..|+|+.|
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~---~--g~~l~gr~i 117 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-K---D--RESMGHRYI 117 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-T---T--EEESSSSEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c---C--CCEECCEEE
Confidence 347899999999999999999999999 788887754 3569999999999999988 6 4 899999999
Q ss_pred EEEEcCChh
Q 043731 392 VLEPVTGEA 400 (498)
Q Consensus 392 ~v~~~~g~~ 400 (498)
.|..+..++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999986543
No 332
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.13 E-value=9.8e-12 Score=101.96 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=63.2
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
++||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.+++ |.+|+..+ | |..++|+.|.|+.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l---~--g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL---D--NTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS---C--SSCCSSSSCSEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh---C--CCEECCeEEEEEE
Confidence 6899999999999999999999999999998764 456999999999 99999887 3 8899999999999
Q ss_pred cCChhH
Q 043731 396 VTGEAE 401 (498)
Q Consensus 396 ~~g~~E 401 (498)
+.....
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 876543
No 333
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.13 E-value=3.4e-11 Score=106.27 Aligned_cols=74 Identities=7% Similarity=0.055 Sum_probs=66.1
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEE--EEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCe----Ee
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKF--IDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGL----SV 386 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~----~i 386 (498)
.+.+|||+|||+.+++++|+++|++||.|.. |.++++. +.|||+|.++ +|.+|+..++ |. .|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-----g~~~~~~~ 95 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-----ALHPPLTI 95 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-----TCCCSCCG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-----CCCCCccC
Confidence 4558999999999999999999999999977 8887654 6799999999 9999999984 77 99
Q ss_pred cCeEEEEEEcCC
Q 043731 387 KNFIAVLEPVTG 398 (498)
Q Consensus 387 ~g~~~~v~~~~g 398 (498)
+|+.|.|..+.+
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999999999876
No 334
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.13 E-value=5.9e-11 Score=115.99 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=66.8
Q ss_pred ccccceEEeccCCCCC---------cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCe
Q 043731 110 QLDVRTIAATPLEYDV---------KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLF 178 (498)
Q Consensus 110 ~~~~rtV~V~nLp~~~---------t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~ 178 (498)
....+||||+|||.++ ++++|+++|++||+|..|+|++ .+|||||+|.+.++|+.|+.. +..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567999999999998 7999999999999999999975 369999999999999999985 677
Q ss_pred e------------CCeEEEEeecch
Q 043731 179 Y------------AGVELHLKPKKE 191 (498)
Q Consensus 179 ~------------~G~~l~v~~k~d 191 (498)
+ .|+.|.|.|+.+
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 7 899999999854
No 335
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=6.2e-11 Score=96.94 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=63.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
..+|||+|||..+++++|+++|++||.|..|.+.+. ++.|||+|.++++|++| +..++.++|+.|.|..+..
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~-------~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL-------CGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT-------TTCEEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH-------hcCCceeCCEEEEEEecCC
Confidence 457999999999999999999999999999998754 78899999999999764 3336788999999998765
Q ss_pred h
Q 043731 399 E 399 (498)
Q Consensus 399 ~ 399 (498)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 336
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=3.4e-11 Score=105.13 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=66.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE-EEee-----cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF-IDFK-----IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~-V~~~-----~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||+.+++++|+++|++||.|.. +.+. +..+.|||+|.++++|++|++ + | |..|+|+.|.|
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~---~--g~~~~gr~i~V 98 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R---H--KQYMGNRFIQV 98 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-S---C--SBCSTTSCBEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-h---C--CCeECCcEEEE
Confidence 457999999999999999999999999865 2222 124569999999999999998 6 4 89999999999
Q ss_pred EEcCChhHHHHHH
Q 043731 394 EPVTGEAEKEYWS 406 (498)
Q Consensus 394 ~~~~g~~E~e~~~ 406 (498)
..+..++..+...
T Consensus 99 ~~a~~~~~~~~~~ 111 (124)
T 1wel_A 99 HPITKKGMLEKID 111 (124)
T ss_dssp EEECHHHHHHHHH
T ss_pred EECCHHHHHHHHH
Confidence 9998766544333
No 337
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=1.5e-10 Score=102.09 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=60.5
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccce-EEEEeCCHHHHHHHHHh--CCeeCC--eEEEEee
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGT-ALIEFSTEEDAEKVLKQ--GLFYAG--VELHLKP 188 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~-aFVeF~s~e~A~kAl~~--~~~~~G--~~l~v~~ 188 (498)
-.|||+|||+.+|+++|+++|++||.|..|+|.. + .|| |||+|.+.++|..|+.. +..+.| +.|+|.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-----~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----R--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-----S--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-----C--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3578999999999999999999999999999853 1 286 99999999999999994 777776 6898877
Q ss_pred cc
Q 043731 189 KK 190 (498)
Q Consensus 189 k~ 190 (498)
++
T Consensus 99 Ak 100 (124)
T 2e5i_A 99 AR 100 (124)
T ss_dssp CS
T ss_pred ec
Confidence 53
No 338
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=97.51 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=65.2
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeec---CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI---GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~---g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
...+|||+|||..+++++|+++|++|+.|..+.-.. ..+.|||+|.++++|++|+..|+ |..|+|+.|.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-----DGEIDGNKVTLDW 88 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEEE
Confidence 345799999999999999999999998766554321 23679999999999999999884 8999999999999
Q ss_pred cCChhH
Q 043731 396 VTGEAE 401 (498)
Q Consensus 396 ~~g~~E 401 (498)
+..+.+
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 876543
No 339
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.1e-10 Score=99.99 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=66.5
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCce----EEEEeec--CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTV----KFIDFKI--GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAV 392 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V----~~V~~~~--g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~ 392 (498)
....|||+|||..+++++|+++|++||.| ..+++.. ..+.|||+|.+.++|++|+..|+ |..|+|+.|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~ 98 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN-----GYKLYGKILV 98 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST-----TCBCSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEE
Confidence 34589999999999999999999999998 5566553 35789999999999999999874 8999999999
Q ss_pred EEEcCChh
Q 043731 393 LEPVTGEA 400 (498)
Q Consensus 393 v~~~~g~~ 400 (498)
|..+....
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99987643
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.09 E-value=9.5e-11 Score=102.51 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=68.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
..+|||+|+ .+++++|+++|++||.|..|.+.+.++.|||.|.+.++|++|++.++ |..|+|+.|.|..+...
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ln-----g~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELN-----GTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHT-----TCBCSSCBCEEEECCSS
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEeCCC
Confidence 457899996 69999999999999999999999999999999999999999999884 88999999999998765
Q ss_pred hH
Q 043731 400 AE 401 (498)
Q Consensus 400 ~E 401 (498)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.09 E-value=3.3e-10 Score=100.72 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=63.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec-CCce-EEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI-GAES-GYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEP 395 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~-g~~~-GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~ 395 (498)
-..+||+||++.+|+++|+++|++||.|..|.+.+ .+++ |||+|.++++|++|+++|+ |..|.| ..+.|..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~Ln-----G~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHT-----TCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcC-----CCeecCCCcEEEEEe
Confidence 34689999999999999999999999999988754 4566 9999999999999999994 888988 7777776
Q ss_pred cC
Q 043731 396 VT 397 (498)
Q Consensus 396 ~~ 397 (498)
+.
T Consensus 103 ak 104 (130)
T 3zzy_A 103 SK 104 (130)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 342
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.6e-10 Score=98.99 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=63.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEe--------
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSV-------- 386 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i-------- 386 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ .+.|||+|.++++|++|++.|+ |..|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~~~~~~~ 99 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN-----GKFIKTPPGVSA 99 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB-----TCCCCCCTTSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEEcCCccccC
Confidence 347899999999999999999999999999999875 3569999999999999999884 7777
Q ss_pred cCeEEEEEEcC
Q 043731 387 KNFIAVLEPVT 397 (498)
Q Consensus 387 ~g~~~~v~~~~ 397 (498)
.++.+.|..+.
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57778888764
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.08 E-value=6.3e-11 Score=105.80 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=66.3
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEE--------EEee---cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEec
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKF--------IDFK---IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVK 387 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--------V~~~---~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~ 387 (498)
.+.+|||+|||+.+|+++|+++|++||.|.. +.+. +..+.|||.|.++++|.+|+..|+ |..|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~~~ 118 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-----GYVLF 118 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-----TBEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-----CCEeC
Confidence 4568999999999999999999999998765 3222 456789999999999999999984 99999
Q ss_pred CeEEEEEEcCChhHH
Q 043731 388 NFIAVLEPVTGEAEK 402 (498)
Q Consensus 388 g~~~~v~~~~g~~E~ 402 (498)
|+.|.|..+.....+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999664433
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=100.36 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=54.9
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeec---------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKI---------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI 390 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~---------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~ 390 (498)
..+|||+|||..+++++|+++|++||.|. +.+.. .++.|||+|.++++|++|++++. .++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-------~~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-------EEDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-------EETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-------hcCCcE
Confidence 45799999999999999999999999998 66653 35679999999999999999862 245555
Q ss_pred EEEE
Q 043731 391 AVLE 394 (498)
Q Consensus 391 ~~v~ 394 (498)
+.+.
T Consensus 80 ~~~~ 83 (114)
T 2dnl_A 80 YLCV 83 (114)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5444
No 345
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=3.7e-10 Score=96.46 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=65.4
Q ss_pred ccceEEeccC--CCCC--------cHHHHHHHhccCCceeeEEcccccCC-CCcccceEEEEeCCHHHHHHHHHh--CCe
Q 043731 112 DVRTIAATPL--EYDV--------KREDVEAFFSQHVKVNSVRLPRHVAD-KRLFCGTALIEFSTEEDAEKVLKQ--GLF 178 (498)
Q Consensus 112 ~~rtV~V~nL--p~~~--------t~e~L~~~F~~~G~V~~Vri~r~~~~-~~~~kG~aFVeF~s~e~A~kAl~~--~~~ 178 (498)
..+.|.+.|+ |.+. ..++|++.|++||+|.+|+|+++..+ ++.++|+|||+|.++++|.+|+.. +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578888887 4333 35789999999999999999988642 235789999999999999999985 899
Q ss_pred eCCeEEEEeec
Q 043731 179 YAGVELHLKPK 189 (498)
Q Consensus 179 ~~G~~l~v~~k 189 (498)
|+|+.|.|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999875
No 346
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=7.3e-11 Score=100.64 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=59.8
Q ss_pred eccCCCCCcHHHHHHHh------------ccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeE
Q 043731 118 ATPLEYDVKREDVEAFF------------SQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVE 183 (498)
Q Consensus 118 V~nLp~~~t~e~L~~~F------------~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~ 183 (498)
+.|||+.+++++|+++| ++||+|.+|+|+++.. ++++|+|||+|.++++|.+|+.. +..++|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~--~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS--SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC--CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777877877777666 9999999999998764 57899999999999999999984 89999999
Q ss_pred EEEeec
Q 043731 184 LHLKPK 189 (498)
Q Consensus 184 l~v~~k 189 (498)
|.|.+.
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 988754
No 347
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.06 E-value=9.1e-11 Score=98.50 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=65.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..++||+|||..+++++|+++|++||.|..|.+.++ ++.|||.|.++++|++|++ + |..|+|+.+.|.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-----~--~~~~~g~~l~v~ 81 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-----S--QINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-----C--CCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-----C--CCeECCEEEEEE
Confidence 357999999999999999999999999999999874 3569999999999999976 2 899999999988
Q ss_pred EcCChhH
Q 043731 395 PVTGEAE 401 (498)
Q Consensus 395 ~~~g~~E 401 (498)
.+....+
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 8765443
No 348
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.06 E-value=6.6e-11 Score=100.73 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=66.1
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCc---eEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGT---VKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIA 391 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~---V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~ 391 (498)
...|||+|||+.+|+++|+++|++||. |..|.+.++ ++.|||+|.++++|++|+. + + |..|+|+.|
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~---~--~~~~~gr~i 84 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-K---H--RMYMGQRYV 84 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-T---T--TCCSSSSCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h---C--cceeCCeEE
Confidence 457899999999999999999999998 888888754 4579999999999999988 6 3 889999999
Q ss_pred EEEEcCChhH
Q 043731 392 VLEPVTGEAE 401 (498)
Q Consensus 392 ~v~~~~g~~E 401 (498)
.|..+..++-
T Consensus 85 ~V~~a~~~~~ 94 (107)
T 2lmi_A 85 EVYEINNEDV 94 (107)
T ss_dssp CCEECCHHHH
T ss_pred EEEECCHHHH
Confidence 9999876443
No 349
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.64 E-value=1.6e-11 Score=105.86 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=68.0
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE--------EEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF--------IDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~--------V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
...|||+|||..+++++|+++|++||.|.. |.+.++ .+.|||+|.++++|++|++.|+ |..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~ 81 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-----GKE 81 (116)
Confidence 447899999999999999999999999988 777654 4569999999999999999884 899
Q ss_pred ecCeEEEEEEcCChhHH
Q 043731 386 VKNFIAVLEPVTGEAEK 402 (498)
Q Consensus 386 i~g~~~~v~~~~g~~E~ 402 (498)
|+|+.|.|..+..+...
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 99999999998775543
No 350
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=8.5e-11 Score=99.61 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=61.6
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..+|||+|||+.+|+++|+++|++||.| .|.+.++ ++.|||+|.++++|++|++ + | +..|+|+.|.|.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~---~--~~~~~gr~i~V~ 87 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-K---D--KANMQHRYVELF 87 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-T---S--SCCSSSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h---C--CCeECCcEEEEE
Confidence 3478999999999999999999999965 7877754 3469999999999999984 3 4 899999999998
Q ss_pred EcCC
Q 043731 395 PVTG 398 (498)
Q Consensus 395 ~~~g 398 (498)
++..
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8754
No 351
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=102.83 Aligned_cols=74 Identities=16% Similarity=0.043 Sum_probs=62.4
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCce----EEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTV----KFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI 390 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V----~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~ 390 (498)
...|||+|||+.+|+++|+++|++||.| ..|.+..+ ++.|||+|.++++|++|+.. + +..|+|+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~----~--~~~l~gR~ 96 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK----H--KDLLGKRY 96 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT----T--TEESSSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh----C--CCeeCCeE
Confidence 3478999999999999999999999975 46666543 45699999999999999864 3 89999999
Q ss_pred EEEEEcCCh
Q 043731 391 AVLEPVTGE 399 (498)
Q Consensus 391 ~~v~~~~g~ 399 (498)
|.|.++..+
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999988654
No 352
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.05 E-value=8.6e-11 Score=104.60 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=66.3
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
..+|||+|||..+++++|+++|++||.|..|.+.++ ++.|||+|.++++|++|++.|+ |..|+|+.|.|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-----g~~i~g~~l~V 121 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELRV 121 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT-----TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 347899999999999999999999999999998764 3469999999999999998873 88899999999
Q ss_pred EEcCC
Q 043731 394 EPVTG 398 (498)
Q Consensus 394 ~~~~g 398 (498)
..+..
T Consensus 122 ~~a~~ 126 (135)
T 2lea_A 122 QMARY 126 (135)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98865
No 353
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.05 E-value=2.4e-10 Score=105.40 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=64.8
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEEEEeecC--CceEEEEeCCHHHHHHHHHHHhhcccCCeEecC--eEEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG--AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN--FIAVLEP 395 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g--~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g--~~~~v~~ 395 (498)
...|||+||++.+|+++|+++|++||.|..|.+... ++.|||+|.++++|++|++.|+ |..|.| +.|.|..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~Ln-----G~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHST-----TBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCcEEEEEE
Confidence 457899999999999999999999999999988643 4579999999999999999984 888855 9999988
Q ss_pred cCC
Q 043731 396 VTG 398 (498)
Q Consensus 396 ~~g 398 (498)
+..
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 754
No 354
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.05 E-value=1.3e-10 Score=112.67 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=68.8
Q ss_pred cceeeeccCCCccccHHHHHHHhccCC--ceEEEEeecCC------ceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFG--TVKFIDFKIGA------ESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFI 390 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG--~V~~V~~~~g~------~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~ 390 (498)
...+|||+||++.+|+++|+++|++|| .|..|.|.++. ++|||.|.+.++|++|++.| | |..|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l---n--g~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL---P--KRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS---T--TSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc---C--CCeECCEE
Confidence 455799999999999999999999999 99999988653 46999999999999999987 3 89999999
Q ss_pred EEEEEcCChhHH
Q 043731 391 AVLEPVTGEAEK 402 (498)
Q Consensus 391 ~~v~~~~g~~E~ 402 (498)
|.|..+......
T Consensus 142 l~V~~a~~~~~~ 153 (229)
T 3q2s_C 142 PVVTPVNKQFLS 153 (229)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEECCCCccc
Confidence 999999765543
No 355
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.04 E-value=1.1e-10 Score=97.79 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=63.7
Q ss_pred ceeeeccCCCccccHHHHHHHhccCCceEE-----EEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 320 TSIDTYKDNMDVVMREDLKSVFHKFGTVKF-----IDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 320 ~~~vfv~nL~~~vt~EdLke~F~~fG~V~~-----V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
...|||+|||..+++++|+++|++||.|.. ....+.++.|||+|.++++|++|++ ++ |..|+|+.|.|.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-----g~~~~g~~l~V~ 90 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-----GLKVFGNEIKLE 90 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-----GCCBTTBCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-----CcEECCcEEEEE
Confidence 457999999999999999999999997644 2223457789999999999999998 74 899999999999
Q ss_pred EcCChh
Q 043731 395 PVTGEA 400 (498)
Q Consensus 395 ~~~g~~ 400 (498)
.+..+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 887643
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=5.9e-10 Score=95.69 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=62.4
Q ss_pred ccceEEeccCCCCC-----------cHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCe
Q 043731 112 DVRTIAATPLEYDV-----------KREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLF 178 (498)
Q Consensus 112 ~~rtV~V~nLp~~~-----------t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~ 178 (498)
..++|+|+||.... ++++|+++|++||.|..|.|+ + +.++|||||+|.++++|.+|+.. +..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~----~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-D----RHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-T----TCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-c----CCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 47899999994432 257999999999999999773 3 23789999999999999999984 889
Q ss_pred eCCeEEEEeecc
Q 043731 179 YAGVELHLKPKK 190 (498)
Q Consensus 179 ~~G~~l~v~~k~ 190 (498)
++|++|.|.+..
T Consensus 89 ~~gr~l~v~~a~ 100 (112)
T 2dit_A 89 FGGRQITAQAWD 100 (112)
T ss_dssp ETTEECEEEECC
T ss_pred ECCcEEEEEEeC
Confidence 999999998763
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.04 E-value=2.7e-10 Score=111.35 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=68.4
Q ss_pred cceeeeccCCCccc---------cHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEe---
Q 043731 319 KTSIDTYKDNMDVV---------MREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSV--- 386 (498)
Q Consensus 319 ~~~~vfv~nL~~~v---------t~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i--- 386 (498)
.+.+|||+||+..+ ++++|+++|++||+|..|.+.++++.|||+|.+.++|+.|+++|. |..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~-----g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMS-----NQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHT-----TCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhC-----CCEEecc
Confidence 34589999999998 799999999999999999999999999999999999999999984 7777
Q ss_pred ---------cCeEEEEEEcCChh
Q 043731 387 ---------KNFIAVLEPVTGEA 400 (498)
Q Consensus 387 ---------~g~~~~v~~~~g~~ 400 (498)
.|+.|.|+.+..+.
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999987643
No 358
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.03 E-value=2.5e-10 Score=106.44 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=68.7
Q ss_pred cceeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEE
Q 043731 319 KTSIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVL 393 (498)
Q Consensus 319 ~~~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v 393 (498)
...+|||+|||..+++++|+++|++||.|..|.+..+ .+.|||.|.++++|.+|++.++ |..|+|+.|.|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln-----g~~l~Gr~l~V 161 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK-----GVPLDGRPMDI 161 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST-----TCBCSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEE
Confidence 4568999999999999999999999999999998764 4679999999999999999873 89999999999
Q ss_pred EEcCChh
Q 043731 394 EPVTGEA 400 (498)
Q Consensus 394 ~~~~g~~ 400 (498)
..+....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987643
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=5.9e-10 Score=94.59 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHhCCeeCCeEEEEeecc
Q 043731 123 YDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQGLFYAGVELHLKPKK 190 (498)
Q Consensus 123 ~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l~v~~k~ 190 (498)
.++++++|+++|++||.|..|+|++ +++|||||+|.+.++|.+|++....+.|++|.|.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~------~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS------KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES------SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc------CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 5689999999999999999999973 3689999999999999999998666889999998864
No 360
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.01 E-value=1.6e-10 Score=102.09 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceE-EEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVK-FIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLE 394 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~-~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~ 394 (498)
..|||+|||+.+|+++|+++|++||.+. .|.+.++ ++.|||+|.++++|++|++. + +..|+|+.|.|.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~----~--~~~l~gR~I~V~ 116 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK----H--KERIGHRYIEVF 116 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT----T--TCCBTTBCCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH----C--CCEECCEEEEEE
Confidence 4689999999999999999999995442 7887753 56799999999999999874 2 689999999998
Q ss_pred EcCCh
Q 043731 395 PVTGE 399 (498)
Q Consensus 395 ~~~g~ 399 (498)
++..+
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.01 E-value=7e-10 Score=96.90 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=66.7
Q ss_pred cccceEEeccCC--CC---CcHHHHHHHhccCCceeeEEcccccCC---CCcccceEEEEeCCHHHHHHHHHh--CCeeC
Q 043731 111 LDVRTIAATPLE--YD---VKREDVEAFFSQHVKVNSVRLPRHVAD---KRLFCGTALIEFSTEEDAEKVLKQ--GLFYA 180 (498)
Q Consensus 111 ~~~rtV~V~nLp--~~---~t~e~L~~~F~~~G~V~~Vri~r~~~~---~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~ 180 (498)
...++|+++|+- .+ --+++|++.|++||+|.+|+|+++... +++++|++||+|.++++|.+|+.. +..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 357899999983 22 246899999999999999999988641 346789999999999999999995 89999
Q ss_pred CeEEEEeec
Q 043731 181 GVELHLKPK 189 (498)
Q Consensus 181 G~~l~v~~k 189 (498)
|+.|.|.+.
T Consensus 98 GR~i~v~~~ 106 (118)
T 3ue2_A 98 GRKVVAEVY 106 (118)
T ss_dssp TEECEEEEE
T ss_pred CcEEEEEEc
Confidence 999998875
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.00 E-value=4.6e-10 Score=106.00 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=63.6
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.+|||+|||+.+++++|+++|++||.|..|.+.++ +|.|||+|+++++|++|++.+ +..++|+.|.|..
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~------~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP------GQKYKETDLLILF 183 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT------TCEETTEECEEEE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC------CCeECCEEEEEEE
Confidence 47899999999999999999999999999998863 467999999999999998754 5699999999987
Q ss_pred cCC
Q 043731 396 VTG 398 (498)
Q Consensus 396 ~~g 398 (498)
...
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 644
No 363
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=4.3e-10 Score=94.25 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=60.8
Q ss_pred eeeccCCCccccHHH----HHHHhccCC-ceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 322 IDTYKDNMDVVMRED----LKSVFHKFG-TVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 322 ~vfv~nL~~~vt~Ed----Lke~F~~fG-~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
++||+|||+.++.++ |+++|++|| .|..| ..+.|||+|.+.++|.+|+..|+ |..|.|+.+.|..+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~-----G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRME-----NEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHT-----TCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhc-----CCccCCceEEEEec
Confidence 489999999999988 558999995 99888 23899999999999999999985 89999999999987
Q ss_pred CCh
Q 043731 397 TGE 399 (498)
Q Consensus 397 ~g~ 399 (498)
...
T Consensus 82 ~~~ 84 (96)
T 2diu_A 82 PKN 84 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.99 E-value=1.2e-09 Score=93.30 Aligned_cols=74 Identities=18% Similarity=0.049 Sum_probs=62.1
Q ss_pred ceeeeccCCCc-----cccHHHHHHHhccCCceEEEEeecC-------CceEEEEeCCHHHHHHHHHHHhhcccCCeEec
Q 043731 320 TSIDTYKDNMD-----VVMREDLKSVFHKFGTVKFIDFKIG-------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVK 387 (498)
Q Consensus 320 ~~~vfv~nL~~-----~vt~EdLke~F~~fG~V~~V~~~~g-------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~ 387 (498)
+..++++|+.. +.++++|++.|++||.|..|.+.++ ++.|||+|.++++|.+|+.+|+ |..++
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-----G~~~~ 82 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-----GRYFG 82 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-----TCEET
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-----CCEEC
Confidence 34677788852 2478999999999999999998753 4679999999999999999984 99999
Q ss_pred CeEEEEEEcCC
Q 043731 388 NFIAVLEPVTG 398 (498)
Q Consensus 388 g~~~~v~~~~g 398 (498)
|+.|.|..+..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999999863
No 365
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.94 E-value=2e-10 Score=103.21 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=62.9
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
.+|||+|||+.+|+++|+++|++|| |..|.+.++ ++.|||+|.++++|++|+ .+ | +..|+|+.|.|.+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~---~--g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SK---D--RANMQHRYIELFL 119 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TC---C--SCSSSSCCCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hh---C--CCEECCEEEEEEE
Confidence 3689999999999999999999999 558888754 456999999999999998 44 4 8999999999998
Q ss_pred cCChh
Q 043731 396 VTGEA 400 (498)
Q Consensus 396 ~~g~~ 400 (498)
+...+
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86643
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.4e-09 Score=96.23 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=60.0
Q ss_pred eeeeccCC----CccccHHHHHHHhccCCceEEEEeecCCce------EEEEeCC----HHH----HHHHHHHHhhcccC
Q 043731 321 SIDTYKDN----MDVVMREDLKSVFHKFGTVKFIDFKIGAES------GYIRFEE----PEG----AQKARAAAVLAQEG 382 (498)
Q Consensus 321 ~~vfv~nL----~~~vt~EdLke~F~~fG~V~~V~~~~g~~~------GfV~F~~----~e~----A~kAv~~l~~~n~~ 382 (498)
..+||+|| |+.+++++|+++|++||+|..+.+..++.+ |||+|.+ ++. |.+|+... ...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~---~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH---ESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT---TTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh---hhc
Confidence 36899999 999999999999999999999998876554 8999997 433 45555421 123
Q ss_pred CeEecCeEEEEEEc-CChh
Q 043731 383 GLSVKNFIAVLEPV-TGEA 400 (498)
Q Consensus 383 g~~i~g~~~~v~~~-~g~~ 400 (498)
|..|+|+.+.|.+= .|.-
T Consensus 80 g~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 80 GCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp CEEETTEEEEEEECCTTHH
T ss_pred CCeecCcEEEEEECcccHH
Confidence 99999999999975 5544
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4.7e-09 Score=90.02 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=63.2
Q ss_pred cceeeeccCCCccc-----------cHHHHHHHhccCCceEEEEeec--CCceEEEEeCCHHHHHHHHHHHhhcccCCeE
Q 043731 319 KTSIDTYKDNMDVV-----------MREDLKSVFHKFGTVKFIDFKI--GAESGYIRFEEPEGAQKARAAAVLAQEGGLS 385 (498)
Q Consensus 319 ~~~~vfv~nL~~~v-----------t~EdLke~F~~fG~V~~V~~~~--g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~ 385 (498)
....++++||.... ++++|+++|++||.|..|.+.. .++.|||+|.++++|++|+..|+ |..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ln-----g~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLD-----GRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHST-----TCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcC-----CCE
Confidence 34578899994332 3689999999999999987642 46789999999999999999884 999
Q ss_pred ecCeEEEEEEcCCh
Q 043731 386 VKNFIAVLEPVTGE 399 (498)
Q Consensus 386 i~g~~~~v~~~~g~ 399 (498)
|+|+.|.|..+.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998763
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.87 E-value=2.7e-09 Score=109.44 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=62.6
Q ss_pred cceeeeccC--CCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEe---cCe--EE
Q 043731 319 KTSIDTYKD--NMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSV---KNF--IA 391 (498)
Q Consensus 319 ~~~~vfv~n--L~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i---~g~--~~ 391 (498)
++.++||+| |++.+|+++|+++|++||+|..|.+.+++++|||+|.+.++|++|+++|+ |..+ .|+ .+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~~~g~~~~l 91 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLN-----GKEVVDDLGQKITL 91 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTT-----TCEEECTTSCEEEC
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhC-----CCccccccCCceEE
Confidence 455899999 57899999999999999999999999999999999999999999999984 5555 234 56
Q ss_pred EEEEcC
Q 043731 392 VLEPVT 397 (498)
Q Consensus 392 ~v~~~~ 397 (498)
++..++
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 666653
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.83 E-value=7.4e-09 Score=88.31 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=54.3
Q ss_pred ccHHHHHHHhccCCceEEEEeecC--------CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 332 VMREDLKSVFHKFGTVKFIDFKIG--------AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 332 vt~EdLke~F~~fG~V~~V~~~~g--------~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
...++|++.|++||.|..|.++++ .+.|||+|.++++|.+|+.+|+ |..++|+.|.+..+.
T Consensus 27 ~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln-----G~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 27 EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT-----GRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC-----CCEeCCCEEEEEEeC
Confidence 345899999999999999998753 4679999999999999999984 999999999999864
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.82 E-value=4.5e-09 Score=107.84 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=52.0
Q ss_pred ccceEEecc--CCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 112 DVRTIAATP--LEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 112 ~~rtV~V~n--Lp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
..++|||+| |++.+|+++|+++|++||+|.+|+|++ .+|||||+|.+.++|++|++.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-------~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-------NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-------TCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-------CCCEEEEEECCHHHHHHHHHH
Confidence 468999998 588999999999999999999999864 369999999999999999995
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.82 E-value=2.6e-09 Score=90.95 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=56.5
Q ss_pred cCCCccccHHHHHHHh------------ccCCceEEEEeecC-----CceEEEEeCCHHHHHHHHHHHhhcccCCeEecC
Q 043731 326 KDNMDVVMREDLKSVF------------HKFGTVKFIDFKIG-----AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN 388 (498)
Q Consensus 326 ~nL~~~vt~EdLke~F------------~~fG~V~~V~~~~g-----~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g 388 (498)
.+|+..+++++|++.| ++||.|..|.+.++ +|.|||+|.++++|.+|+.+|+ |..++|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln-----g~~~~G 95 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN-----NRWFNG 95 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT-----TCEETT
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC-----CCEECC
Confidence 5677778887777666 99999999999865 5679999999999999999984 999999
Q ss_pred eEEEEEEc
Q 043731 389 FIAVLEPV 396 (498)
Q Consensus 389 ~~~~v~~~ 396 (498)
+.|.|..+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99988754
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.75 E-value=2.7e-08 Score=86.31 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=61.8
Q ss_pred cccceEEeccC--CCC--------CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCe
Q 043731 111 LDVRTIAATPL--EYD--------VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLF 178 (498)
Q Consensus 111 ~~~rtV~V~nL--p~~--------~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~ 178 (498)
+..+.|.+.|+ |.+ --.++|++.|++||.|.+|.|+++. .+|+|||+|.+.++|.+|+.. +..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34678888887 222 1256889999999999999998762 479999999999999999984 899
Q ss_pred eCCeEEEEeec
Q 043731 179 YAGVELHLKPK 189 (498)
Q Consensus 179 ~~G~~l~v~~k 189 (498)
|+|+.|.|.+.
T Consensus 80 f~GR~i~v~~~ 90 (114)
T 3s6e_A 80 FAGKMITAAYV 90 (114)
T ss_dssp ETTEECEEEEE
T ss_pred ECCEEEEEEEE
Confidence 99999999876
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.73 E-value=2.1e-08 Score=87.48 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=60.7
Q ss_pred ceeeeccCCC--cc---ccHHHHHHHhccCCceEEEEeecCC----------ceEEEEeCCHHHHHHHHHHHhhcccCCe
Q 043731 320 TSIDTYKDNM--DV---VMREDLKSVFHKFGTVKFIDFKIGA----------ESGYIRFEEPEGAQKARAAAVLAQEGGL 384 (498)
Q Consensus 320 ~~~vfv~nL~--~~---vt~EdLke~F~~fG~V~~V~~~~g~----------~~GfV~F~~~e~A~kAv~~l~~~n~~g~ 384 (498)
+..|++.|+- .. -.+++|++.|++||.|..|.+.++. +.|||+|.++++|.+|+.+|+ |.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-----Gr 94 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----GR 94 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-----TC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-----CC
Confidence 3456777772 21 2469999999999999999887542 568999999999999999994 99
Q ss_pred EecCeEEEEEEcCC
Q 043731 385 SVKNFIAVLEPVTG 398 (498)
Q Consensus 385 ~i~g~~~~v~~~~g 398 (498)
.++|+.|.+..+..
T Consensus 95 ~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 95 WFAGRKVVAEVYDQ 108 (118)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCcEEEEEEcCh
Confidence 99999999998754
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.4e-08 Score=83.66 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=54.1
Q ss_pred CccccHHHHHHHhccCCceEEEEee-cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCCh
Q 043731 329 MDVVMREDLKSVFHKFGTVKFIDFK-IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGE 399 (498)
Q Consensus 329 ~~~vt~EdLke~F~~fG~V~~V~~~-~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~ 399 (498)
+..+++++|+++|++||.|..|.+. +.++.|||+|.++++|++|+..+ ..+.|+.|.|..+...
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~-------~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNE-------VGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTC-------CBCSSSBCEEECSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhc-------CCCCCCeEEEEEccCC
Confidence 3569999999999999999999987 56789999999999999998863 2357889998877553
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.65 E-value=3.9e-08 Score=85.26 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=58.4
Q ss_pred ccHHHHHHHhccCCceEEEEeecC--CceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCChhHHHHHHH
Q 043731 332 VMREDLKSVFHKFGTVKFIDFKIG--AESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTGEAEKEYWSL 407 (498)
Q Consensus 332 vt~EdLke~F~~fG~V~~V~~~~g--~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g~~E~e~~~~ 407 (498)
-.+++|++.|++||.|..|.+.+. +|.|||+|.++++|.+|+.+|+ |..++|+.|.+..+. +..|.++
T Consensus 29 el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~ln-----G~~f~GR~i~v~~~~---~~~y~~~ 98 (114)
T 3s6e_A 29 EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALH-----GRWFAGKMITAAYVP---LPTYHNL 98 (114)
T ss_dssp HHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEEEC---HHHHHHH
T ss_pred HHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEEEEEc---HHHHHHh
Confidence 456899999999999999998775 5789999999999999999984 999999999999874 4445443
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=2.2e-07 Score=81.40 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=62.3
Q ss_pred ccceEEeccCCCC-CcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCC-HHHHHHHHHh----CCeeCCeEEE
Q 043731 112 DVRTIAATPLEYD-VKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFST-EEDAEKVLKQ----GLFYAGVELH 185 (498)
Q Consensus 112 ~~rtV~V~nLp~~-~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s-~e~A~kAl~~----~~~~~G~~l~ 185 (498)
....|||+|||.+ ++.++|+++|++||+|..|.+.++.. +|||+|.+ +++|..|+.. +..++|..+.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 4678999999999 99999999999999999999988642 49999999 8999999984 6788998888
Q ss_pred Eeec
Q 043731 186 LKPK 189 (498)
Q Consensus 186 v~~k 189 (498)
+..-
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=9.4e-07 Score=73.32 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=51.3
Q ss_pred HHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcCC
Q 043731 335 EDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVTG 398 (498)
Q Consensus 335 EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~g 398 (498)
.+|.+.|++||+|..|+|..+. |||.|.+.++|.+|++ | | |..++|+.++|..++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-m---n--G~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-L---N--GKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-G---T--TCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-c---C--CeEeCCeEEEEEeCCC
Confidence 6799999999999999999865 9999999999999987 6 4 9999999999999875
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.7e-06 Score=71.80 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred cceEEeccCCC----CC-c---HHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeE
Q 043731 113 VRTIAATPLEY----DV-K---REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVE 183 (498)
Q Consensus 113 ~rtV~V~nLp~----~~-t---~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~ 183 (498)
.-||.|.-.|. +. . ..+|.+.|++||.|..||+..+. +||+|.+.++|.+|+.. +..+.|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 35777776652 12 2 36799999999999999998752 79999999999999996 88999999
Q ss_pred EEEeecc
Q 043731 184 LHLKPKK 190 (498)
Q Consensus 184 l~v~~k~ 190 (498)
|+|..+.
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999884
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.18 E-value=1.9e-06 Score=82.11 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=56.9
Q ss_pred CcHHHHHHHhccCCceeeEEcccccCC---CCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEEEeec
Q 043731 125 VKREDVEAFFSQHVKVNSVRLPRHVAD---KRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELHLKPK 189 (498)
Q Consensus 125 ~t~e~L~~~F~~~G~V~~Vri~r~~~~---~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~v~~k 189 (498)
-..++|++.|++||.|.+|.|+++..+ +++++|++||+|.+.++|.+|+.. +..|+||.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 456889999999999999999876542 347899999999999999999995 89999999998875
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=6.4e-06 Score=68.74 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=57.6
Q ss_pred cceEEeccCCCC------Cc---HHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCe
Q 043731 113 VRTIAATPLEYD------VK---REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGV 182 (498)
Q Consensus 113 ~rtV~V~nLp~~------~t---~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~ 182 (498)
.-||.|.-++.+ .. ..+|.+.|++||.|..||+..+. +||+|.+.++|.+|++. +..++|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 458888877632 22 25689999999999999998762 89999999999999996 8999999
Q ss_pred EEEEeecc
Q 043731 183 ELHLKPKK 190 (498)
Q Consensus 183 ~l~v~~k~ 190 (498)
.|+|..+.
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998763
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.02 E-value=5.1e-06 Score=79.07 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=54.1
Q ss_pred ccHHHHHHHhccCCceEEEEee----------cCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEcC
Q 043731 332 VMREDLKSVFHKFGTVKFIDFK----------IGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPVT 397 (498)
Q Consensus 332 vt~EdLke~F~~fG~V~~V~~~----------~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~~ 397 (498)
-.+++|++.|++||.|..|.+. ++.|.|||+|.+.++|.+|+.+|+ |..++||.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-----gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----GRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-----CceECCeEEEEEEcC
Confidence 4568999999999999999886 334569999999999999999984 999999999999876
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=5.4e-06 Score=69.17 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=49.3
Q ss_pred HHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 335 EDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 335 EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.+|.+.|++||+|..|+|..++ +||.|.+.++|.+|++ | | |..++|+.++|...
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-l---d--G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-V---D--GMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-G---G--GSEETTEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-c---C--CeeeCCeEEEEecc
Confidence 6799999999999999998775 9999999999999998 7 4 99999999999865
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.3e-05 Score=68.52 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=61.5
Q ss_pred cCCCccccHHHHHHHhccC-----CceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 326 KDNMDVVMREDLKSVFHKF-----GTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 326 ~nL~~~vt~EdLke~F~~f-----G~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
=|||+.+++..|+++.+++ |.+..+.+.++.++|+|.|.+...|.||.-+| + |.+|+|+.+.+..+
T Consensus 27 ~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL---~--G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 27 FPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMIL---N--GSQFQGKVIRSGTI 97 (117)
T ss_dssp ECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHH---S--SEEETTEEEEEECH
T ss_pred ecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhc---C--CeeecCeEEEecCH
Confidence 3899999999999999999 99999999999999999999999999997777 4 99999999998864
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00087 Score=57.26 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=64.4
Q ss_pred ccceEEeccCCCCCcHHHHHHHhccC-----CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQH-----VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVEL 184 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~~-----G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l 184 (498)
..|||-+=|||-.++...|+.+..++ |.+..|.++.+. |-|+|+|.+...|-+|.-. +..|+|+.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 47999999999999999999999999 999999887663 5599999999999998853 899999999
Q ss_pred EEeecch
Q 043731 185 HLKPKKE 191 (498)
Q Consensus 185 ~v~~k~d 191 (498)
++-.-.+
T Consensus 93 r~gTv~e 99 (117)
T 2l9w_A 93 RSGTIND 99 (117)
T ss_dssp EEECHHH
T ss_pred EecCHHH
Confidence 9876544
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.0015 Score=55.18 Aligned_cols=69 Identities=25% Similarity=0.268 Sum_probs=60.3
Q ss_pred ccceEEeccCCCCCcHHHHHHHhcc---C--CceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCCeEEE
Q 043731 112 DVRTIAATPLEYDVKREDVEAFFSQ---H--VKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAGVELH 185 (498)
Q Consensus 112 ~~rtV~V~nLp~~~t~e~L~~~F~~---~--G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G~~l~ 185 (498)
-.++|.|.|||.++.++.|+-+|+. - |.|.+|.... +.|+|+|.+.+.|++.|+. .+.++|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 3579999999999999999999987 2 6888886521 6799999999999999998 8999999999
Q ss_pred Eeec
Q 043731 186 LKPK 189 (498)
Q Consensus 186 v~~k 189 (498)
|.+-
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 9874
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.0052 Score=51.89 Aligned_cols=67 Identities=22% Similarity=0.168 Sum_probs=58.1
Q ss_pred eeeccCCCccccHHHHHHHhcc---C--CceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEEc
Q 043731 322 IDTYKDNMDVVMREDLKSVFHK---F--GTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEPV 396 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~---f--G~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~~ 396 (498)
.|.|.|||..++++-|.-+|+. - |+|..|...+ .+|+|.|.+++.|++.++.- .+.|.|..+.|.+-
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~------~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQA------DHELHGAQLSLRPA 81 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCS------CCBSSSSBCEEEEC
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCC------cceecCeEEEEEcC
Confidence 5778999999999999999987 2 5899998876 89999999999999997652 67889999999874
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.03 E-value=0.03 Score=48.46 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=59.2
Q ss_pred cccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh-CCeeCC-eEEEEee
Q 043731 111 LDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ-GLFYAG-VELHLKP 188 (498)
Q Consensus 111 ~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~-~~~~~G-~~l~v~~ 188 (498)
...+.|.|-+||... ...|...|++||.|.....+. ......|.|.++.+|++||.. +..++| ..|-|.+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 457889999999885 677889999999999988632 246899999999999999996 777875 6666777
Q ss_pred cch
Q 043731 189 KKE 191 (498)
Q Consensus 189 k~d 191 (498)
-.+
T Consensus 94 ~~d 96 (119)
T 1wwh_A 94 CID 96 (119)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.89 E-value=0.019 Score=47.48 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=49.7
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCce--------EEEEeCCHHHHHHHHHHHh
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES--------GYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~--------GfV~F~~~e~A~kAv~~l~ 377 (498)
.+.|++||...|++++.+.++..+.+.|..+.+|+.+ |||.|.+++++..-...+.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 4678999999999999999999999999999877643 8999999999999888873
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.79 E-value=0.024 Score=47.35 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=44.1
Q ss_pred eeccCCCccccHHHHHHHhccCC--ceEEEEeecCCceEEEEeCCHHHHHHHHHHHh
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFG--TVKFIDFKIGAESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG--~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
||+=+.|...-..||.++|+.|| .|.+|+ ..+|||-|.+++.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 33338999999999999999998 578885 8899999999999999988764
No 390
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.46 E-value=0.0055 Score=64.90 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=47.4
Q ss_pred hhhccccceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 107 MKEQLDVRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 107 ~~~~~~~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
.+.+...|+|+|. .|...++.+|.++|++||+|.++.+-.+. .-||.|||.+.+++..++..
T Consensus 47 ~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~------g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 47 ERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF------GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS------SEEEEEECC---CCHHHHSS
T ss_pred HHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC------CeEEEEEeCCHHHHHHHHhc
Confidence 3455678999998 79999999999999999999999986532 26999999999999988875
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.90 E-value=0.049 Score=45.98 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=58.9
Q ss_pred eeeeccCCCccc-c----HHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecCeEEEEEE
Q 043731 321 SIDTYKDNMDVV-M----REDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKNFIAVLEP 395 (498)
Q Consensus 321 ~~vfv~nL~~~v-t----~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g~~~~v~~ 395 (498)
+++++-||+..+ . .+.++++|..|+++....+-++=.---|.|.++++|.+|+..|. +..+.|+++.+--
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh-----~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLH-----KTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTST-----TSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhc-----cceecCceeEEEe
Confidence 355667887655 2 36789999999987777777777778999999999999988874 8899999988887
Q ss_pred cC
Q 043731 396 VT 397 (498)
Q Consensus 396 ~~ 397 (498)
++
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.84 E-value=0.038 Score=46.18 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=40.4
Q ss_pred eEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 115 TIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 115 tV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
-+++ +||......||.++|+.||.|. |+-.- -..|||.|.+++.|..|+..
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid--------DTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--------DTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE--------TTEEEEECSCHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc--------CCeEEEEecCHHHHHHHHHh
Confidence 3555 9999999999999999999432 22222 24699999999999999984
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.69 E-value=0.022 Score=47.72 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=41.6
Q ss_pred CCCccccHHHHHHHhccCC--ceEEEEeecCCceEEEEeCCHHHHHHHHHHHh
Q 043731 327 DNMDVVMREDLKSVFHKFG--TVKFIDFKIGAESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 327 nL~~~vt~EdLke~F~~fG--~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
+.|...-..||.++|+.|| .|.+|+ ..+|||-|.+++.|..|+..+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 8899999999999999998 467774 8899999999999999988763
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.48 E-value=0.099 Score=44.14 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=55.9
Q ss_pred cceEEeccCCCCC-c----HHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh--CCeeCCeEEE
Q 043731 113 VRTIAATPLEYDV-K----REDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ--GLFYAGVELH 185 (498)
Q Consensus 113 ~rtV~V~nLp~~~-t----~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~--~~~~~G~~l~ 185 (498)
..||+|.|||.++ . .+.++++|.+|+++......+.- .=.-|.|.++++|.+|-.. +..|+|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3689999998865 2 36789999999998887654431 1378999999999999885 7889999998
Q ss_pred Eeec
Q 043731 186 LKPK 189 (498)
Q Consensus 186 v~~k 189 (498)
+-..
T Consensus 78 ~YFg 81 (104)
T 1wey_A 78 LYFA 81 (104)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.17 E-value=0.14 Score=42.18 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=50.4
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCC-CcccceEEEEeCCHHHHHHHHHhCCeeCCeE
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADK-RLFCGTALIEFSTEEDAEKVLKQGLFYAGVE 183 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~-~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~ 183 (498)
..|.|++||+.+|++++.+.++.+..+........+... ...-+-|||.|.+.+++....+. ++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~---~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR---FDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH---HTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH---hCCcE
Confidence 368999999999999999999999887766554322111 12235699999999999999985 55543
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.13 E-value=0.036 Score=46.43 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=40.0
Q ss_pred EEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 116 IAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 116 V~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
+++ +||......||.++|++||.| .|+-.-+ ..|||.|.+++.|..|+..
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--------TEEEEEEEEECHHHHHHHH
T ss_pred EEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHh
Confidence 455 999999999999999999932 2322222 4699999999999999984
No 397
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.76 E-value=0.64 Score=38.10 Aligned_cols=96 Identities=13% Similarity=0.259 Sum_probs=69.1
Q ss_pred eeeeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCC--eEecCeEEEEEEc-C
Q 043731 321 SIDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGG--LSVKNFIAVLEPV-T 397 (498)
Q Consensus 321 ~~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g--~~i~g~~~~v~~~-~ 397 (498)
+++-+-|+|..+-..++--...-.|---|+++.. |.|.|+|.+.+...-|+..|-.+|... +.|.|.+..|--. -
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvistip 90 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIP 90 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECCCC
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeecCC
Confidence 3444569999998888887778888777888874 479999999999999999886555554 4567888866544 4
Q ss_pred ChhHHHHHHHHhhhhhccccc
Q 043731 398 GEAEKEYWSLLRGNQERHRDV 418 (498)
Q Consensus 398 g~~E~e~~~~~~~~~~k~~~~ 418 (498)
.++|+.||.-++-+..-++.+
T Consensus 91 edeeknywnyikfkknefrkf 111 (129)
T 4eyt_A 91 EDEEKNYWNYIKFKKNEFRKF 111 (129)
T ss_dssp HHHHHHHHHHHHHHCC-----
T ss_pred chhhhchhhheeehhhHHHHH
Confidence 567777998766555555443
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.70 E-value=0.18 Score=43.55 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=51.9
Q ss_pred CCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHhhcccCCeEecC-eEEEEEEcCChh
Q 043731 327 DNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAVLAQEGGLSVKN-FIAVLEPVTGEA 400 (498)
Q Consensus 327 nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i~g-~~~~v~~~~g~~ 400 (498)
+.|... -..+-..|++||+|.......+..--+|+|.++.+|++|+.. | |..|+| -.|-|.+.....
T Consensus 31 GFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k----N--G~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 31 GFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK----D--GRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp CCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT----T--TCEETTTEECEEEECCCHH
T ss_pred CCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh----C--CeEecCCEEEEEEECCCHH
Confidence 566664 456678899999998887765666679999999999999765 4 999985 667888876543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.51 E-value=0.14 Score=44.99 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=55.0
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceee-EEcccccC-------CCCc-----ccceEEEEeCCHHHHHHHHHh-CCe
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNS-VRLPRHVA-------DKRL-----FCGTALIEFSTEEDAEKVLKQ-GLF 178 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~-Vri~r~~~-------~~~~-----~kG~aFVeF~s~e~A~kAl~~-~~~ 178 (498)
...|.|=|+|.+. ...+.+.|++||.|.. +.+.+... ..++ ..+...|+|+++.+|.+||.. +..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4568888998765 4567789999999887 43332110 0011 246789999999999999996 889
Q ss_pred eCCeEEEEeecc
Q 043731 179 YAGVELHLKPKK 190 (498)
Q Consensus 179 ~~G~~l~v~~k~ 190 (498)
++|..|-|.|-.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999977777754
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.06 E-value=0.11 Score=43.42 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=47.0
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCce--------EEEEeCCHHHHHHHHHHH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAES--------GYIRFEEPEGAQKARAAA 376 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~--------GfV~F~~~e~A~kAv~~l 376 (498)
.|.|+.||...|++++.+.++..=++.|..+..|.-+ |||.|.++++...-.+..
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 5788999999999999999998777888777776554 899999999988887776
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.39 E-value=0.43 Score=39.73 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=47.2
Q ss_pred cceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCC-CcccceEEEEeCCHHHHHHHHHhCCeeCCeEE
Q 043731 113 VRTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADK-RLFCGTALIEFSTEEDAEKVLKQGLFYAGVEL 184 (498)
Q Consensus 113 ~rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~-~~~kG~aFVeF~s~e~A~kAl~~~~~~~G~~l 184 (498)
.-.|.|+.||+.+|++++.+.++.+=.+............ ...-.-|||.|.+.+++..+.+. |+|...
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~---f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR---FDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH---STTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH---cCCcEE
Confidence 4579999999999999988888776554333322211111 11224699999999999999986 555543
No 402
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=88.12 E-value=0.27 Score=55.66 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHhcchhhccCCCCCcChHHHhh----hCCCCC--CceehHHHhcch-hhHhhhccCCCCCCCCCcccHHH
Q 043731 3 SLDEETAQAVLRQVEFYFSDSNIPTDEFLRGK----ISESSD--AMVSLALICSFK-RMKEHLHLGNVKSEDIPEDTLEA 75 (498)
Q Consensus 3 ~~~~~~~~~i~~QvEfYFsd~NL~~D~fL~~~----~~~~~~--g~V~l~~i~~F~-r~k~l~~~~~~~~~~v~~~~~~~ 75 (498)
+-+++.-..|+.+|.|.|||.-|.-..=|..+ +.+..+ |.||+++|+.+- |+-++++..+..-|..|.-.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 44567788999999999999988776655544 444333 899999999994 88888887776656666667888
Q ss_pred HHHHHhhcCcceeecCcceeecccCCcc
Q 043731 76 VAETLRKSSSLKLSEDGMKVGRSAELPT 103 (498)
Q Consensus 76 V~eALk~S~~leVsedg~kVrR~~~~~~ 103 (498)
|..|.+.++-+.+++.+ .|+|..|.|.
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 208 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPS 208 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCH
Confidence 99999999887788877 9999999885
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.57 E-value=0.78 Score=40.23 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=50.3
Q ss_pred CCCccccHHHHHHHhccCCceEE-EEeec-------------------CCceEEEEeCCHHHHHHHHHHHhhcccCCeEe
Q 043731 327 DNMDVVMREDLKSVFHKFGTVKF-IDFKI-------------------GAESGYIRFEEPEGAQKARAAAVLAQEGGLSV 386 (498)
Q Consensus 327 nL~~~vt~EdLke~F~~fG~V~~-V~~~~-------------------g~~~GfV~F~~~e~A~kAv~~l~~~n~~g~~i 386 (498)
+.|...+..-| +.|++||.|.. +...+ +..--.|+|.++.+|.+|+.. | |..|
T Consensus 14 GFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~----N--G~ii 86 (132)
T 3p3d_A 14 GYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE----N--GAVF 86 (132)
T ss_dssp CCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT----T--TCEE
T ss_pred ecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh----C--CeEe
Confidence 66777666554 68999998744 22111 111248999999999999765 4 9999
Q ss_pred cCeEEEEEEcCChhHHHHHH
Q 043731 387 KNFIAVLEPVTGEAEKEYWS 406 (498)
Q Consensus 387 ~g~~~~v~~~~g~~E~e~~~ 406 (498)
+|.-|-|.+.. ++-.+.+.
T Consensus 87 ~G~mIGV~Py~-~~~ve~l~ 105 (132)
T 3p3d_A 87 NGVLLGVIPYT-KDAVERLQ 105 (132)
T ss_dssp TTEECEEEECC-HHHHHHHC
T ss_pred CcEEEEEEECC-HHHHHHHh
Confidence 99988888875 55555443
No 404
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=81.36 E-value=0.51 Score=49.91 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=38.7
Q ss_pred eeeccCCCccccHHHHHHHhccCCceEEEEeecCCc-eEEEEeCCHHHHHHHHHH
Q 043731 322 IDTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAE-SGYIRFEEPEGAQKARAA 375 (498)
Q Consensus 322 ~vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~-~GfV~F~~~e~A~kAv~~ 375 (498)
.|||. .|..++..+|.++|++||.|..+.+-.+.+ .+.|+|.+.+++..++..
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 46775 788899999999999999999988776655 489999999999877543
No 405
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.77 E-value=4.8 Score=42.86 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=41.5
Q ss_pred eeccCCCccccHHHHHHHhccCCceEEEEeecCCceEEEEeCCHHHHHHHHHHHh
Q 043731 323 DTYKDNMDVVMREDLKSVFHKFGTVKFIDFKIGAESGYIRFEEPEGAQKARAAAV 377 (498)
Q Consensus 323 vfv~nL~~~vt~EdLke~F~~fG~V~~V~~~~g~~~GfV~F~~~e~A~kAv~~l~ 377 (498)
+|+-..|......+|.++|+.||.|. | ...+..++||.|.+++.|..++.++.
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v~-V-~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNIQ-I-SWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCCE-E-EECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCEE-E-EEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 34334777778899999999999531 2 23367889999999999999999885
No 406
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.71 E-value=11 Score=40.17 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=40.4
Q ss_pred ceEEeccCCCCCcHHHHHHHhccCCceeeEEcccccCCCCcccceEEEEeCCHHHHHHHHHh
Q 043731 114 RTIAATPLEYDVKREDVEAFFSQHVKVNSVRLPRHVADKRLFCGTALIEFSTEEDAEKVLKQ 175 (498)
Q Consensus 114 rtV~V~nLp~~~t~e~L~~~F~~~G~V~~Vri~r~~~~~~~~kG~aFVeF~s~e~A~kAl~~ 175 (498)
..++|+ +|..+...+|.+.|+.||.| .|+..- ..+|||.|.+++.|..+++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--------dt~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--------DTSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--------SSEEEEECSCHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--------CCeEEEEECCHHHHHHHHHH
Confidence 345555 99999999999999999954 333221 24699999999999999985
No 407
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=60.54 E-value=2.4 Score=35.00 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=38.6
Q ss_pred CceEEEEeCCHHHHHHHHHHHhhcccCC--eEecCeEEEEE-EcCChhHHHHHHHH
Q 043731 356 AESGYIRFEEPEGAQKARAAAVLAQEGG--LSVKNFIAVLE-PVTGEAEKEYWSLL 408 (498)
Q Consensus 356 ~~~GfV~F~~~e~A~kAv~~l~~~n~~g--~~i~g~~~~v~-~~~g~~E~e~~~~~ 408 (498)
.|.|.|||.+.+...-|+..+-.+|... +.|.|.+..|- ..-.++|+.||.-+
T Consensus 77 egqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvistipedeeknywnyi 132 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKNYWNYI 132 (137)
Confidence 4568999999999999998876555444 45667777543 34567888899754
Done!