Your job contains 1 sequence.
>043732
MAGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV
TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQ
PVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQL
GHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGVSDNFRTGSDN
NSPAFSSNR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043732
(249 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 615 5.0e-60 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 564 1.3e-54 1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 372 2.8e-34 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 364 2.0e-33 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 356 1.4e-32 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 353 2.9e-32 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 344 2.6e-31 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 305 3.5e-27 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 298 1.9e-26 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 268 5.1e-26 2
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 268 5.1e-26 2
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 266 6.4e-26 2
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 266 6.4e-26 2
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 292 8.4e-26 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 292 8.4e-26 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 291 1.1e-25 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 289 1.8e-25 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 288 2.2e-25 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 288 2.2e-25 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 285 4.6e-25 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 284 5.9e-25 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 283 7.6e-25 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 283 7.6e-25 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 283 7.6e-25 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 278 2.6e-24 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 274 6.8e-24 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 272 1.1e-23 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 270 1.8e-23 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 269 2.3e-23 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 267 3.8e-23 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 265 6.1e-23 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 260 2.1e-22 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 252 1.5e-21 1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 227 7.6e-19 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 223 1.7e-18 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 217 7.5e-18 1
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 184 4.5e-17 2
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 185 1.1e-16 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 183 2.2e-16 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 186 3.0e-16 2
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 201 3.7e-16 1
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 178 6.6e-16 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 176 2.2e-15 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 176 2.2e-15 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 174 3.4e-15 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 174 4.9e-15 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 174 5.7e-15 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 174 6.3e-15 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 174 6.3e-15 2
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 193 1.1e-14 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 161 1.9e-14 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 184 2.3e-14 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 184 2.3e-14 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 188 3.4e-14 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 186 4.0e-14 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 181 4.5e-14 2
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 188 5.9e-14 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 179 7.9e-14 1
DICTYBASE|DDB_G0275971 - symbol:DDB_G0275971 "RNA recogni... 188 1.2e-13 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 179 1.4e-13 2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 176 1.6e-13 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 173 3.4e-13 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 173 5.4e-13 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 167 7.4e-13 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 167 1.5e-12 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 166 1.9e-12 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 180 2.1e-12 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 167 2.3e-12 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 178 3.5e-12 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 176 4.2e-12 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 162 5.0e-12 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 175 5.7e-12 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 160 8.2e-12 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 171 9.1e-12 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 172 1.1e-11 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 158 1.4e-11 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 173 1.8e-11 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 157 1.8e-11 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 174 2.3e-11 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 174 2.5e-11 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 154 2.7e-11 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 167 3.5e-11 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 174 4.2e-11 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 154 4.2e-11 1
UNIPROTKB|J3KQA8 - symbol:HNRNPA1 "Heterogeneous nuclear ... 154 4.2e-11 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 154 4.2e-11 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 160 4.6e-11 2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 153 5.6e-11 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 153 5.6e-11 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 171 6.5e-11 1
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 166 6.6e-11 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 160 7.2e-11 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 152 7.3e-11 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 152 7.3e-11 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 152 7.3e-11 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 166 1.2e-10 2
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 150 1.3e-10 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 149 1.7e-10 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 149 1.7e-10 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 149 1.7e-10 1
WARNING: Descriptions of 550 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 124/238 (52%), Positives = 159/238 (66%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGLAWET S+TLR +FEQ+G+ILEAVVI KNTGRSKGYGFVTFRDP +A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLPSF------GHPRPSSA------AP---LFG 114
RACA+P+P+I GR+ANCNLA LGR RP LP G RP+S P L G
Sbjct: 80 RACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSLIG 139
Query: 115 SPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFF--NPQGLYNPYVGQHYLPLYGAPGTVNS 172
+ + QP+ YNYQ ++P Y TAY P + QGLY+PY+GQ YL +YG PG VNS
Sbjct: 140 NYPYQQPLPYNYQQGVVYP--YGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGAVNS 197
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGV 230
+Y +GQL P GH T V+GY + G HI+ GGP + +T+++ P +Q P+ +G+
Sbjct: 198 PVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSGI 255
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 117/233 (50%), Positives = 145/233 (62%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGLAWET S+TLR +F+Q+GDILEAVVIT KNTGRSKGYGFVTFRDP +A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDL-----PSF-GHPRPSSA------APL---FG 114
RAC +P+P+I GR+ANCNLA LGR+RP + P G RP S +P FG
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLHFG 139
Query: 115 SPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFF--NPQGLYNPYVGQHYLPLYGAPGTVNS 172
S +HQP +YNYQ ++P Y T Y P + QG Y PY+GQ YL +YG PG VNS
Sbjct: 140 SHPYHQPPTYNYQQGVVYP--YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGAVNS 197
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPP 225
Y +GQL H PG H T +GY G H++ G + + +P P
Sbjct: 198 PGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPYPSPSAP 250
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 103/246 (41%), Positives = 127/246 (51%)
Query: 1 MAGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
M G D+ K+FVGGLAWET DT+R YFEQFG+I+EAVVIT KNTGRSKGYGFV
Sbjct: 9 MEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFV 68
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQ 120
TF++ +A+RAC N +P+I GR+ANCNLA LG +P P+ PR + F SPG
Sbjct: 69 TFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPT--SPRHGTGR--FRSPGSGV 124
Query: 121 PV---SYNYQ-----SAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNS 172
+ S ++ SAF+H +TA P F PY YG G
Sbjct: 125 GLVAPSPQFRGSSSSSAFVHQQQQQHTAQFP-F--------PY------STYGFSGYSQE 169
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGY---GMLG--HHIVPYGGPNDNGLTSA--AFPMIQPP 225
GMY HH GG + G+ G G H PY P N S+ A +Q
Sbjct: 170 GMYPMNYYNHHLYGGQQFSPYMGHPSAGSTGMFHGFYPYY-PQYNAAQSSNQAQAQVQAQ 228
Query: 226 HTAGVS 231
H G S
Sbjct: 229 HHQGFS 234
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 92/221 (41%), Positives = 129/221 (58%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGLAWET+ +LR YFEQFGDI+EAVVIT K++GRSKGYGFVTF DP +A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 70 RACANPSPMIGGRKANCNLAHLG--RTRPDLPSFGHPRPSS---AAPL---FGSPGHH-- 119
+AC +P+P+I GR+ANCNLA G R++P P GH +P FG+
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPFKTHFGTAATAIP 122
Query: 120 QPVSYNYQSAFMHPHPYWYTAYAPGFFNP-QGLYNPYVG---QHYLPLYGA-PGTVNSGM 174
P+ +++ + + +P+ +++Y+ + P Q YN Y G QH P+YG+ P T +
Sbjct: 123 SPLPFSHYT-LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQH--PMYGSGPMTGVAAA 179
Query: 175 YSHGQLGH-HFPGGHDNTVVRGYGMLGH--HIVPYGGPNDN 212
+ G + F G N V GY L + H+ Y P N
Sbjct: 180 PAAGFYPYLQFAEG--NGPVTGYAPLHYPNHMFHYSAPGGN 218
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 80/169 (47%), Positives = 100/169 (59%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ + K+FVGGLAWET +D +R YF+QFG+ILEAV+IT K TG+SKGYGFVTFRD SA
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLP----SFGHPRPSSAAPLFGSPGHHQPVSYN 125
RA A+P+P+I GRKANCN+A GR RP P G P G PV
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQQA 132
Query: 126 YQSAFMHPHPYWYTAYAPGFFNPQGLYNPYV--GQHYLP-LYGAPGTVN 171
+ M+P Y YT Y + Q LYN + Q+Y +YG G +
Sbjct: 133 AAAQLMYPS-YGYT-YNSEYGYHQALYNAQLQQAQYYQQQMYGGGGATS 179
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 85/171 (49%), Positives = 103/171 (60%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGLAWET +D +R YFEQFG+ILEAV+IT KNTG+SKGYGFVTFR+ SA
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPL-FGSP----GHHQPVSY 124
RA A+P+P+I GRKANCN+A GR RP P G + S + G P G P+
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSPPR-GRGQTGSPSQYQSGGPSTYTGMAAPLPP 131
Query: 125 NYQSAFMHPHPYWYTAYAPGFFN-PQGLYNPYV--GQHYLP---LYGAPGT 169
M+P Y YT Y P F Q LYN + Q+Y LYG T
Sbjct: 132 AAAPQLMYPS-YGYT-YNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGGAT 180
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 84/188 (44%), Positives = 112/188 (59%)
Query: 1 MAGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
MAG G D+ K+FVGGLAWET+ +T++ +FEQFG+ILEAVVIT K +GRSKGYGFV
Sbjct: 1 MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLG--RTRPDLPSFG--------HPRPSSAA 110
TFR+ +A AC + +P+I GR+ANCNLA LG R++P P+ G S+
Sbjct: 60 TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQ 119
Query: 111 PLFGSPGHHQPVSYNYQSAFMHPH-P---YWYTAYAPGFFN-PQGLYNPYVGQHYLPLYG 165
FG P QP ++ + +PH P + Y+ Y+P + + P LY Y G YG
Sbjct: 120 TGFGPPPPPQPPTFTH-----YPHLPLNLFGYSPYSPDYSSFPTNLYGMY-GCTSGGQYG 173
Query: 166 APGTVNSG 173
G NSG
Sbjct: 174 VYGNRNSG 181
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 82/222 (36%), Positives = 104/222 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNY 126
A RAC +P+P+I GRKAN NLA+LG + R P F P P F + P Y Y
Sbjct: 65 ADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQ-IHPAFIQRPYGIPTHYVY 123
Query: 127 QSAFMHPH---PYWY-TAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH 182
AFM P P+ TA + +P Y Y G Y A + Y
Sbjct: 124 PQAFMQPSVVIPHIQPTATSATASSP---YIDYTGAAYAQYASAATAAAAAAYEQYPYAA 180
Query: 183 HFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
P GYG + P +AAF QP
Sbjct: 181 S-PAATGYVAAAGYGYAMQQPLATAAPGSAAAAAAAFGQYQP 221
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 83/226 (36%), Positives = 105/226 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A A P Y Y G Y A Y+
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPAAAAASTTP---YIGYTGAAYAQYSAAAAAYEQYPYAAS 175
Query: 179 QLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
G+ GYG + P +AAF QP
Sbjct: 176 PAA---AAGY--VAAGGYGYAVQQPITAAAPGTAAAAAAAFGQYQP 216
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 268 (99.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGL + T+ TL YFEQFGDI EAVVIT +NT +S+GYGFVT +D SA
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 70 RACANPSPMIGGRKANCNLAHLG 92
RAC +P+P+I GRKAN NLA+LG
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLG 113
Score = 41 (19.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 26/97 (26%), Positives = 35/97 (36%)
Query: 88 LAHLGRTRPDLPSFGHPRPSSAA-PLF---GSPGHHQPVSYNYQSAFMHPHPYWYTAYAP 143
L L + R LP +P + PL G+ Q YN +A M+P A A
Sbjct: 138 LQALFQPRMGLPQMYYPTVTGLVNPLMAQQGAAAQQQLFDYNALAAVMNPQ----AAAAY 193
Query: 144 GFFNPQGLYN--PYVGQHYLPLYGAPGTVNSGMYSHG 178
G QG + P + Y G V Y+ G
Sbjct: 194 GI-QSQGKFAAAPTTIEQYAAYPAGYGLVPQSAYNIG 229
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 268 (99.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVGGL + T+ TL YFEQFGDI EAVVIT +NT +S+GYGFVT +D SA
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 70 RACANPSPMIGGRKANCNLAHLG 92
RAC +P+P+I GRKAN NLA+LG
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLG 113
Score = 41 (19.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 26/97 (26%), Positives = 35/97 (36%)
Query: 88 LAHLGRTRPDLPSFGHPRPSSAA-PLF---GSPGHHQPVSYNYQSAFMHPHPYWYTAYAP 143
L L + R LP +P + PL G+ Q YN +A M+P A A
Sbjct: 138 LQALFQPRMGLPQMYYPTVTGLVNPLMAQQGAAAQQQLFDYNALAAVMNPQ----AAAAY 193
Query: 144 GFFNPQGLYN--PYVGQHYLPLYGAPGTVNSGMYSHG 178
G QG + P + Y G V Y+ G
Sbjct: 194 GI-QSQGKFAAAPTTIEQYAAYPAGYGLVPQSAYNIG 229
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 266 (98.7 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 23 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 82
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 83 RAAADRACKDPNPIIDGRKANVNLAYLG 110
Score = 42 (19.8 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 188 HDNTVVRGYGMLGHHIVP 205
H + R YG+ H+I P
Sbjct: 128 HPTLIQRTYGLTPHYIYP 145
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 266 (98.7 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 23 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 82
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 83 RAAADRACKDPNPIIDGRKANVNLAYLG 110
Score = 42 (19.8 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 188 HDNTVVRGYGMLGHHIVP 205
H + R YG+ H+I P
Sbjct: 128 HPTLIQRTYGLTPHYIYP 145
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 83/229 (36%), Positives = 109/229 (47%)
Query: 2 AGA--YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGF 59
AGA + + D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGF
Sbjct: 15 AGAKMHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGF 74
Query: 60 VTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLF 113
VT D +A RAC +P+P+I GRKAN NLA+LG +P + P F P+ F
Sbjct: 75 VTMADRAAAERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPF 133
Query: 114 GSPGHHQPVSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTV 170
G P H Y Y AF+ P P+ A A P Y Y G Y Y A
Sbjct: 134 GIPAH-----YVYPQAFVQPGVVIPHVQPAAAAASTTP---YIDYTGAAYAQ-YSAAAAA 184
Query: 171 NSGMYSHGQLGHHF-PGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
+ ++ Q + P GYG + P +AA
Sbjct: 185 AAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAA 233
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 85/232 (36%), Positives = 119/232 (51%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
G D+ K+FVGGLAW+T+ + + +F ++GDILEAV+I+ K T RSKGYGFVTF+D
Sbjct: 9 GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68
Query: 66 GSALRACANPSPMIGGRKANCNLAHLG---RTRPDL--PSFGHPRPSSAA--PLFGSPGH 118
+A RAC + +P+I GR+ANCNLA LG R P + P G P+ + A P G+
Sbjct: 69 KAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG-PKNGNRATPPHVGNHSQ 127
Query: 119 -HQPVSYNYQSAFMHPH---PYW-Y-TAY-APGF-FNPQGLY--NPYVGQHYLPLYGAPG 168
+ P + Q H P++ Y +AY AP FN + Y Y+ +Y + P
Sbjct: 128 WYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQ 187
Query: 169 TVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIV-PYGGPNDNGLTSAAF 219
+ Y H HH GG V M+ + V PY G +F
Sbjct: 188 SQPQPQYYH----HHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSF 235
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 81/226 (35%), Positives = 105/226 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHH-Q 120
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H+
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVY 123
Query: 121 PVSYNYQSAFMHPH--PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
P +Y Q + PH P T+ +P Y Y Y A Y +
Sbjct: 124 PQAY-VQPGVVIPHVQPTAATSTSP--------YIDYTSAAYAQYSAAAAAAAYDQYPYA 174
Query: 179 QLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
P GYG + P +AAF QP
Sbjct: 175 AS----PAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAAAFGQYQP 216
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 82/224 (36%), Positives = 106/224 (47%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHH-Q 120
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ +G P H+
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVY 123
Query: 121 PVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQL 180
P +Y Q + PH TA A +P Y Y Y Y A Y +
Sbjct: 124 PQAY-VQQGLVIPHVQ-QTAAAST--SP---YIDYTSAAYAQ-YAAAAAAAYDQYPYAAS 175
Query: 181 GHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
P GYG + P +AAF QP
Sbjct: 176 ----PATTGYVTAAGYGYAVPQPLTAATPGTAAAAAAAFAQYQP 215
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 88/251 (35%), Positives = 117/251 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNS-GMYSH 177
Y Y AF+ P P+ A A P L+ + P+ G G + + +
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPAAAAASTTPYILHRSCLR----PVLGRRGRLRAIPVRRL 174
Query: 178 GQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGVSDNFRTG 237
GG +R G HH G D G F + P A S G
Sbjct: 175 SSCRCRLRGGGG---LRLRGAAAHH---RSGTGDGGCGGCGFWPVPTPTAADRSYAIADG 228
Query: 238 SDNNSPAFSSN 248
+ +FSS+
Sbjct: 229 LPREARSFSSS 239
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 83/226 (36%), Positives = 107/226 (47%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQIHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A A +P Y Y Y Y A + +
Sbjct: 121 --YVYPHAFVQPGVVIPHVQQAAAAST-SP---YIDYTSAAYAQ-YSAAAAAAAAYDQYP 173
Query: 179 QLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
G+ T GYG + P +AAF QP
Sbjct: 174 YAASPATTGYVTTA--GYGYAVPQPLTAAAPGTAAAAAAAFGQYQP 217
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 79/221 (35%), Positives = 104/221 (47%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A P Y Y G Y Y A + ++
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 174
Query: 179 QLGHHF-PGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
Q + P GYG + P +AA
Sbjct: 175 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAA 215
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/136 (42%), Positives = 83/136 (61%)
Query: 1 MAGAYGAE-ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGF 59
+A Y E D+ K++VGGL WET ++ LR+YFEQFGDI+ ++ + TGRS+GYGF
Sbjct: 38 VAQHYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGF 97
Query: 60 VTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLF--GSPG 117
VTFRD SA RAC NP P+I GR+A CNLA++G + + + + P++ G+
Sbjct: 98 VTFRDAESATRACQNPKPVIDGREAKCNLAYIGGR---VNNNQNAQQQQVLPMYPTGTSF 154
Query: 118 HHQPVSYNYQSAFMHP 133
HH + + HP
Sbjct: 155 HHPNIIPTHLMVIGHP 170
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 79/221 (35%), Positives = 104/221 (47%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A P Y Y G Y Y A + ++
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPTAAAASTAP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 174
Query: 179 QLGHHF-PGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
Q + P GYG + P +AA
Sbjct: 175 QYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAAA 215
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 79/221 (35%), Positives = 103/221 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A P Y Y G Y Y A + ++
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 174
Query: 179 QLGHHF-PGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
Q + P GY + P +AA
Sbjct: 175 QYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAAA 215
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 79/221 (35%), Positives = 103/221 (46%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSFGHP----RPSSAAPLFGSPGHHQP 121
A RAC +P+P+I GRKAN NLA+LG +P + P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHPH---PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHG 178
Y Y AF+ P P+ A P Y Y G Y Y A + ++
Sbjct: 121 --YVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAAYD 174
Query: 179 QLGHHF-PGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
Q + P GY + P +AA
Sbjct: 175 QYPYAASPAATGYVTTGGYSYAVQQPITAAAPGTAAAAAAA 215
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 68/160 (42%), Positives = 92/160 (57%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ ++ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D
Sbjct: 2 HSSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDL--P--SFGHPR--PSSAAPLFG-SPG 117
+A RAC +P+P+I GRKAN NLA+LG +P + P SFG P+ P+ +G S
Sbjct: 62 RSAAERACKDPNPIIDGRKANVNLAYLG-AKPRILQPGFSFGVPQIHPTFLQRPYGDSED 120
Query: 118 HHQPVSYNYQSAFMHPHPYWYTAYAPGFF-NPQGLYNPYV 156
H P+ Y P P+ P + PQ P V
Sbjct: 121 DHSPLLY--------PPPFRQVMRIPAHYVYPQAFVQPSV 152
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 79/221 (35%), Positives = 110/221 (49%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 19 QKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSA 78
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRP-SSAAPLF--GSPGHHQPVSY 124
A RAC +P+P+I GRKAN NLA+LG +P P G+ P G QP Y
Sbjct: 79 AERACKDPNPIIDGRKANVNLAYLG-AKPRSPLTGYSTGVQQVHPTLIQRQYGLSQPYVY 137
Query: 125 NY---QSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHY--LPLYGAPGTVNSGMYSHGQ 179
Q + + P T+ +P + + Y Y + P +PG + S MY G
Sbjct: 138 PQAVLQPSLLLPTQVSSTSSSP-YLDFSTAYAQYAASAFEQYPYAASPGFL-SYMYPPGT 195
Query: 180 LGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFP 220
G P +T + G P+ P+ L +++ P
Sbjct: 196 AG---PSSAISTPIPNPLSTGEE--PHPLPSSRSLHTSSTP 231
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 67/158 (42%), Positives = 87/158 (55%)
Query: 3 GA-YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
GA +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT
Sbjct: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPS-FG----HPRPSSAAPLFGSP 116
D +A RAC +P+P+I GRKAN NLA+LG L + F P+ +G
Sbjct: 82 MADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLT 141
Query: 117 GHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNP 154
H Y Y A + P A P +P Y P
Sbjct: 142 PH-----YIYPPAIVQPSVVIPAAPVPSLSSPYIEYTP 174
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 67/158 (42%), Positives = 86/158 (54%)
Query: 3 GA-YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
GA +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT
Sbjct: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPS-FG----HPRPSSAAPLFGSP 116
D +A RAC +P+P I GRKAN NLA+LG L + F P+ +G
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLT 141
Query: 117 GHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNP 154
H Y Y A + P A P +P Y P
Sbjct: 142 PH-----YIYPQAIVQPSVVIPAAPVPSLSSPYIEYTP 174
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 64/153 (41%), Positives = 82/153 (53%)
Query: 3 GA-YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
GA +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT
Sbjct: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQP 121
D +A RAC +P+P I GRKAN NLA+LG L + P +
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQVPPTLIQRTYGLT 141
Query: 122 VSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNP 154
Y Y A + P A P +P Y P
Sbjct: 142 PHYIYPQAIVQPSVVIPAAPVPPLSSPYIEYTP 174
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 51/88 (57%), Positives = 66/88 (75%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 62 RAAAERACKDPNPIIDGRKANVNLAYLG 89
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 53/91 (58%), Positives = 67/91 (73%)
Query: 3 GA-YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
GA +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT
Sbjct: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 81
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLG 92
D +A RAC +P+P I GRKAN NLA+LG
Sbjct: 82 MADRAAAERACKDPNPNIDGRKANVNLAYLG 112
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 50/85 (58%), Positives = 63/85 (74%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG 92
A RAC +P+P+I GRKAN NLA+LG
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG 89
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/127 (44%), Positives = 72/127 (56%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K+FVG L W T +D LR YFEQFG +++A V++ GRSKGYGF+TFRD S +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSA 129
RA N P+I GR NCNLA G + + HP L GS + P + YQ A
Sbjct: 68 RALQNSKPIIDGRTTNCNLASAGAKQ----NMNHPN------LNGSFNYVIP-PHQYQQA 116
Query: 130 FMHPHPY 136
H PY
Sbjct: 117 PQHVIPY 123
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 227 (85.0 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 80/247 (32%), Positives = 105/247 (42%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ D +RK+FV GL WET +TL FE +G+I E V+ K TG++KG+GFV F+
Sbjct: 97 ADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRK 156
Query: 67 SALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHH-QPVSYN 125
A A P I R A C LA +G P GH +P GS +H QP
Sbjct: 157 GAKEALKEPKKRILNRTATCQLASMG---PAASGKGHDQPGPVKISMGSMANHGQPQQQQ 213
Query: 126 YQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYL--PLYGAPGTVNSG-MYSH--GQL 180
Q H A +P Q Y+P G L P A G MY G L
Sbjct: 214 VQG--QHVFNGGGMAASPFMLGNQ--YHPLYGAGMLGNPALAAAAAAGGGYMYPMLAGAL 269
Query: 181 GHHFPGGHDNTVVRGYGMLGHHIVP-YGGPNDNGLTS----AAFPMIQPPHTAGVSDNFR 235
H GG + +V+ M G + P G + L S + P P AG
Sbjct: 270 AH---GGLGSDMVQSSQMGGIGVDPSVGAAGLSALGSYFRGQSLPSTYPDSDAGGKRG-- 324
Query: 236 TGSDNNS 242
TG D+++
Sbjct: 325 TGKDSDA 331
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 41/89 (46%), Positives = 60/89 (67%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D+ K++VGGL W T + L +F++FG+I+ V+ + T RS+GYGFVTF+D SA
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 70 RACANPSPMIGGRKANCNLAHLG-RTRPD 97
RAC +P+P I GR NC LA +G + +P+
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGAKVKPN 97
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 42/78 (53%), Positives = 55/78 (70%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K++V GL W T ++ L +YFE+FG+I+ A V+ T RSKG+GFVTFR+ SA RAC N
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 75 PSPMIGGRKANCNLAHLG 92
P+ I GR NC LA+LG
Sbjct: 70 PNHTIDGRTVNCKLAYLG 87
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 184 (69.8 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ D +RK+FV GL W+T +D+L F+Q+G+I + + K +G+SKGYGF+ F+
Sbjct: 121 ADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRS 180
Query: 67 SALRACANPSPMIGGRKANCNLAHLG 92
A A P IG R C LA +G
Sbjct: 181 GARNALKQPQKKIGTRMTACQLASIG 206
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 57/210 (27%), Positives = 87/210 (41%)
Query: 1 MAGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
+A A ++ RK++V ++ + + L +F +FG+I E + K TGR KG+
Sbjct: 214 VAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALF 273
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPL-------F 113
+R SA +A P G +C+ A+ G + H + + +
Sbjct: 274 VYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSRYQRNDNNGY 333
Query: 114 GSPGHHQP-VSYNYQS--AFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYG--APG 168
G+PG H ++ N Q+ AF TA GL N GQ L G +PG
Sbjct: 334 GAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGL-NQAFGQALLGTLGTASPG 392
Query: 169 TVNSGMYS-HGQLGHHFPGGHDNTVVRGYG 197
V GM S +G + PG V GYG
Sbjct: 393 AVG-GMPSGYGTQANISPG-----VYPGYG 416
Score = 54 (24.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 164 YGAPGTVNSGMY-SHG-QLGHHFPGGHDNTVVRGYGMLGH--HIVPYGGP 209
YG ++ G+Y +G Q G+ GG+ T G G G H YGGP
Sbjct: 401 YGTQANISPGVYPGYGAQAGYQ--GGYQ-TQQPGQGGAGRGQHGAGYGGP 447
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 185 (70.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T+ ++LR YF ++GDI EA+V+ T RS+G+GFVTF DP S +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + G+K + +A R P +
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKM 113
Score = 141 (54.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + +++YFEQFG I +A+++ K T R +G+GFVTF+ + C
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 178 IHFHEINNKMVECKKA 193
Score = 45 (20.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 92 GRTRPDLPSFGHPRPS------SAAPLFGSPGHHQPVSY--NYQSAFMHPHPY 136
GR PSFG P P+ P +P Q +S NYQ+A H Y
Sbjct: 240 GRGYSGYPSFGLPYPTVDLTNGQLTPNNNTPLLTQALSVMNNYQAAAAAAHSY 292
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 183 (69.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
S N KLF+GG++W+TN + L+ YF FG+++EAV++ + TGR++G+GFV F DP A
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 66/245 (26%), Positives = 100/245 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RK+FVGGL +TYFEQFG + VV+ NT R +G+GF+T+ + +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPR-PSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G+ + + R P S G R P A +G + ++ Y F
Sbjct: 168 KTFHELNGK-----MVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLN-GYAQGFNP 221
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGG--HDN 190
Y G F+P G +Y YG VN + G L F GG ++
Sbjct: 222 AAVGGYGLRMDGRFSPVGAGRSGFA-NYSSGYGM--NVN---FDQG-LPTGFTGGTNYNG 274
Query: 191 TVVRGYGMLGHHI---------VPYGGPNDNGLTSAAFPMIQPP---HTAGVS-DNFRTG 237
V G GM ++I V Y G N G S+ F + + G++ +N T
Sbjct: 275 NVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGG-NSSFFSSVTRNLWGNNGGLNYNNNNTN 333
Query: 238 SDNNS 242
S++N+
Sbjct: 334 SNSNT 338
Score = 50 (22.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 172 SGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG--LTSAAFPMIQP-PHTA 228
SG + + + PGG +N V G YGG ++G L + + P + A
Sbjct: 351 SGPFGNSGVNWGAPGGGNNAVSNENVKFG-----YGGNGESGFGLGTGGYAARNPGANKA 405
Query: 229 GVSDNFRTGSDNNSPAFSS 247
S +F + S N+ + +
Sbjct: 406 APSSSFSSASATNNTGYDT 424
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 186 (70.5 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 37/98 (37%), Positives = 58/98 (59%)
Query: 3 GAYGAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
G G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFV
Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
TF DP S + P + + + +A R +P +
Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 137 (53.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 36 (17.7 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 24/79 (30%), Positives = 33/79 (41%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQP 224
G P T+++ M G LG +P T RGY G P G G +AA+ P
Sbjct: 202 GLPYTMDAFMLGMGMLG--YPN-FVATYGRGYP--G--FAPSYGYQFPGFPAAAYG---P 251
Query: 225 PHTAGVSDNFRTGSDNNSP 243
A V+ +GS+ P
Sbjct: 252 VAAAAVAAARGSGSNPARP 270
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 45/96 (46%), Positives = 58/96 (60%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT VT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSF 101
A RAC +P+P+I GRKAN NLA+LG +P + P F
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGF 99
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 178 (67.7 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 41/108 (37%), Positives = 60/108 (55%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A AD KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 67 SALRACANPSPMIGGRKAN---CNLAHLG--RTRPDLPSFGHPRPSSA 109
A+ + GR + C + RTRP + PR S+
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPK-EGWKGPRSDSS 109
Score = 145 (56.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 47/150 (31%), Positives = 67/150 (44%)
Query: 3 GAYGAEADSA-NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
G G +DS+ + K+FVGG+ LR YF++FG + E V+I R +G+GF+T
Sbjct: 100 GWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 159
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQP 121
F D S +A I G+K A ++ P G P S +GS P
Sbjct: 160 FEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAP--GQPGASQ----WGS--RVAP 211
Query: 122 VSYNYQSAFMHPHPYWYTAYAP-GFFNPQG 150
+ N + P P W Y P G + P G
Sbjct: 212 SAANGWAG--QPPPTWQQGYGPQGMWVPAG 239
Score = 63 (27.2 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 25/85 (29%), Positives = 34/85 (40%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + + + GF +P P G +P
Sbjct: 324 PPPSQAAPDMSKPPTAQP-DFPYGQ---YGYGQDLSGFGQGFSDPSQ-QPPSYGGPSVPG 378
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 379 SGGPPAGGSG-FGRGQ-NHNVQGFH 401
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 176 (67.0 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A AD KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 67 SALRACANPSPMIGGRKAN---CNLAHLG--RTRP 96
A+ + GR + C + RTRP
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 46/147 (31%), Positives = 66/147 (44%)
Query: 6 GAEADSA-NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +DS+ + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 104 GPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAP--GQPGASQ----WGS--RVAPSAA 215
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 216 NGWAG--QPPPTWQQGYGPQGMWVPAG 240
Score = 63 (27.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 25/85 (29%), Positives = 34/85 (40%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + + + GF +P P G +P
Sbjct: 325 PPPSQAAPDMSKPPTAQP-DFPYGQ---YGYGQDLSGFGQGFSDPSQ-QPPSYGGPSVPG 379
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 380 SGGPPAGGSG-FGRGQ-NHNVQGFH 402
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 176 (67.0 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A AD KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 67 SALRACANPSPMIGGRKAN---CNLAHLG--RTRP 96
A+ + GR + C + RTRP
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 46/147 (31%), Positives = 66/147 (44%)
Query: 6 GAEADSA-NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +DS+ + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 104 GPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAP--GQPGASQ----WGS--RVAPSAA 215
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 216 NGWAG--QPPPTWQQGYGPQGMWVPAG 240
Score = 63 (27.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 25/85 (29%), Positives = 34/85 (40%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + + + GF +P P G +P
Sbjct: 325 PPPSQAAPDMSKPPTAQP-DFPYGQ---YGYGQDLSGFGQGFSDPSQ-QPPSYGGPSVPG 379
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 380 SGGPPAGGSG-FGRGQ-NHNVQGFH 402
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 174 (66.3 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRP 96
+ GR + C + RTRP
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRP 87
Score = 141 (54.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 46/147 (31%), Positives = 65/147 (44%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 94 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGASQ----WGS--RVVPNAA 205
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 206 NGWAG--QPPPTWQQGYGPQGMWVPAG 230
Score = 65 (27.9 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 25/85 (29%), Positives = 34/85 (40%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + ++ GF +P P G +P
Sbjct: 315 PPPSQAAPDMSKPPTAQP-DFPYSQ---YGYGQDLASFGQGFSDPSQ-QPPSYGGPSVPG 369
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 370 SGGPPAGGSG-FGRGQ-NHNVQGFH 392
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 174 (66.3 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRP 96
+ GR + C + RTRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 141 (54.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/147 (31%), Positives = 65/147 (44%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGASQ----WGS--RVVPNAA 215
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 216 NGWAG--QPPPTWQQGYGPQGMWVPAG 240
Score = 64 (27.6 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 25/85 (29%), Positives = 33/85 (38%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + + GF +P P G +P
Sbjct: 325 PPPSQAAPDMSKPPTAQP-DFPYSQ---YGYGQDLAGFGQGFSDPSQ-QPPSYGGPSVPG 379
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 380 SGGPPAGGSG-FGRGQ-NHNVQGFH 402
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 174 (66.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRP 96
+ GR + C + RTRP
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRP 87
Score = 141 (54.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 45/147 (30%), Positives = 66/147 (44%)
Query: 6 GAEADS-ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G+ +D+ + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 94 GSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTP--GPPGASQ----WGS--RIMPSAA 205
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 206 NGWAG--QPPPTWQQGYGPQGMWVPAG 230
Score = 63 (27.2 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 26/85 (30%), Positives = 33/85 (38%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS A P QP + Y S F + + + GF +P PY G P
Sbjct: 317 PPPSQATQDMSKPPTAQP-EFPY-SQFGYGQDL--SGFGQGFSDPSQQPPPYGGPSVQPS 372
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 373 SGPPAG-GSG-FGRGQ-NHNVQGFH 394
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 174 (66.3 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRP 96
+ GR + C + RTRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 141 (54.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/147 (31%), Positives = 65/147 (44%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGASQ----WGS--RVVPNAA 215
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 216 NGWAG--QPPPTWQQGYGPQGMWVPAG 240
Score = 63 (27.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 25/85 (29%), Positives = 32/85 (37%)
Query: 104 PRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL 163
P PS AAP P QP + Y + + GF +P P G +P
Sbjct: 325 PPPSQAAPDMSKPPTAQP-DFPYSQYAGYGQDL--AGFGQGFSDPSQ-QPPSYGGPSVPG 380
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 381 SGGPPAGGSG-FGRGQ-NHNVQGFH 403
Score = 38 (18.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 18/69 (26%), Positives = 22/69 (31%)
Query: 92 GRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTA---YAPGFFNP 148
G P SFG+ P F PG P + + P P A P P
Sbjct: 283 GYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQP 342
Query: 149 QGLYNPYVG 157
Y+ Y G
Sbjct: 343 DFPYSQYAG 351
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 174 (66.3 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRP 96
+ GR + C + RTRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 141 (54.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/147 (31%), Positives = 65/147 (44%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGASQ----WGS--RVVPNAA 215
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 216 NGWAG--QPPPTWQQGYGPQGMWVPAG 240
Score = 63 (27.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 25/86 (29%), Positives = 33/86 (38%)
Query: 104 PRPSSAAPLFGSPGHHQP-VSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLP 162
P PS AAP P QP Y + + + + GF +P P G +P
Sbjct: 325 PPPSQAAPDMSKPPTAQPDFPYGQYAGYGQD----LSGFGQGFSDPSQ-QPPSYGGPSVP 379
Query: 163 LYGAPGTVNSGMYSHGQLGHHFPGGH 188
G P SG + GQ H+ G H
Sbjct: 380 GSGGPPAGGSG-FGRGQ-NHNVQGFH 403
Score = 37 (18.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 18/69 (26%), Positives = 21/69 (30%)
Query: 92 GRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTA---YAPGFFNP 148
G P SFG+ P F PG P + + P P A P P
Sbjct: 283 GYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQP 342
Query: 149 QGLYNPYVG 157
Y Y G
Sbjct: 343 DFPYGQYAG 351
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 193 (73.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 42/86 (48%), Positives = 54/86 (62%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A++D + RKLF+ GLA +T ++ LR+ F +GD+ EA+VI K TG+SKGYGFVTF
Sbjct: 68 ADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Query: 67 SALRACANPSPMIGGRKANCNLAHLG 92
AL A PS I GR LA G
Sbjct: 128 GALLALKEPSKKIDGRVTVTQLAASG 153
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 61/225 (27%), Positives = 99/225 (44%)
Query: 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
AD + RK++V + ++ +D L +F +GD+ E + K TG+S+G+ ++ A
Sbjct: 162 ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGA 221
Query: 69 LRACANPSPMIGGRKANCNLAHLGRT--RPDLPSFGHPRPSSAAPLFGSP-GHHQPVSYN 125
A A+P +I G+ NC LA G+ +P +P S + G G +P
Sbjct: 222 QAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQ-AQDGGSGHGHVHGEGMGMVRPAG-P 279
Query: 126 YQSAFMHPHPYWYTAYAPGFF-----NPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQL 180
Y +A Y+ P + G+ + G HY YG PG +G+Y G L
Sbjct: 280 YGAAGGISAYGGYSGGPPAHHMNSTHSSMGVGSAGYGGHYGG-YGGPG--GTGVY--GGL 334
Query: 181 GHHFPGGHDNTVVRGYGMLGHHIVPYGG--PNDN--GLTSAA-FP 220
G + G + G + +P GG P GL+S+A +P
Sbjct: 335 GGGYGGPGTGS---GQYRMPPSSMPGGGGYPESGHYGLSSSAGYP 376
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 161 (61.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ FVGGLAW TN + L+ F QFGD++++ +I + +GRS+G+GFVTF+D A+R
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDE-KAMR 61
Score = 37 (18.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGG 187
YG G G Y G G + GG
Sbjct: 143 YGGGGRREGGGYGGGDGGSYGGGG 166
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
A +A RKLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP
Sbjct: 50 AQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 109
Query: 69 LRACANPSPMIGGR 82
A+ + GR
Sbjct: 110 GTVLASRPHTLDGR 123
Score = 127 (49.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 131 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 190
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPS 107
S +A I G+K A ++ P G P S
Sbjct: 191 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGAS 231
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 34/88 (38%), Positives = 54/88 (61%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
S + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFVTF DP S +
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 71 ACANPSPMIGGRKANCNLAHLGRTRPDL 98
P + + + +A R +P +
Sbjct: 74 VLGQPHHELDSKTIDPKVAFPRRAQPKM 101
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 188 (71.2 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 68/229 (29%), Positives = 101/229 (44%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ DS+ R +FV GL W+T + L+ FE +G+I E V+ K+TGR+KG+GFV F+
Sbjct: 156 ADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRK 215
Query: 67 SALRACANPSPMIGGRKANCNLA---HLGRTRPDL-P------SFGHPRPSSAAPLFGSP 116
A A NP + R +C A + G+ R P H S L G
Sbjct: 216 GARAALKNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESVKIDLSHTGNQSEMALPGID 275
Query: 117 -GHHQPVSYNYQ---SAFMHPH-PYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVN 171
GH + Q S + + P++ + P FNP +Y +G P+ G N
Sbjct: 276 LGHGLDKGHQQQQNMSMYAGQNMPFYGHSQPPPGFNP--MYGAMMGN---PMVA--GLQN 328
Query: 172 SGMYSHGQL--GHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
M+ G + G P H GM+G ++ G N NG+ + A
Sbjct: 329 YRMFGSGMMNQGPMMPPNH-------MGMVGQYV---GDGNVNGVGAGA 367
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 186 (70.5 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 37/98 (37%), Positives = 58/98 (59%)
Query: 3 GAYGAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
G G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFV
Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
TF DP S + P + + + +A R +P +
Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 137 (53.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 181 (68.8 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ D A R +FV G W+T + L+T FE +G+I E V+ K+TGR KGYGFV F+
Sbjct: 401 ADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK 460
Query: 67 SALRACANPSPMIGGRKANCNLA 89
A A P + R CNLA
Sbjct: 461 GAREALKRPEKRMYNRIVVCNLA 483
Score = 42 (19.8 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 182 HHFPGGHDNTVVRGYGMLGHHIVPYGGPN----DNGLTSAAFPMIQPPHTAGVSDNF 234
H FPG D YG L + + G PN +G+ + M+ PP+ G++ +
Sbjct: 551 HQFPG-FDPM----YGALSGNQMLAGLPNYGMFGSGMMTNQGSMLPPPNHLGMAGQY 602
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 188 (71.2 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 42/125 (33%), Positives = 65/125 (52%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ D +RK+FV GL W+T ++TL F+Q+G+I + + K +G+SKGYGF+ ++
Sbjct: 133 ADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 67 SALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNY 126
A A P IG R C LA G P FG P +AA + +P H +
Sbjct: 193 GARNALKQPQKKIGSRMTACQLASKG------PVFGGA-PIAAAAV-SAPAQHSNSEHTQ 244
Query: 127 QSAFM 131
+ ++
Sbjct: 245 KKIYV 249
Score = 121 (47.7 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 43/169 (25%), Positives = 69/169 (40%)
Query: 2 AGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
A A + ++ +K++V + E + L +F +FG+I E + K TGR KG+
Sbjct: 233 APAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFV 292
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQP 121
++ SA RA P G +C A G +P H P + + +P + +
Sbjct: 293 YKSSESAKRALEEPHKTFEGHILHCQKAIDG-PKPGKQQQHHHNPHA----YNNPRYQRN 347
Query: 122 VSYNYQSAFMHPHPYWYTAYAP-GFFNPQG-LYNPYVGQHYLPLYGAPG 168
+ Y H H A P G P + NP +GQ L + G
Sbjct: 348 DNNGYGPPGGHGH---LMAGNPAGMGGPTAQVINPAIGQALTALLASQG 393
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 3 GAYGAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
G G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFV
Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 61 TFRDPGSALRACANP 75
TF DP S + P
Sbjct: 68 TFADPASVDKVLGQP 82
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 188 (71.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 63/252 (25%), Positives = 108/252 (42%)
Query: 2 AGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
+ + + + S K+FVGG++W+ + +TL+TYF QFG++LE +I NT +SKGYGF+T
Sbjct: 91 SSTFSSSSSSKCTKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFIT 150
Query: 62 FRDPGSALRACANPSPMIGGRKANCN---LAHLGRTRPDLPSFGHPRPSSAAPLFGSPGH 118
F + S + + + G+ N H G + G + G
Sbjct: 151 FENEDS-IEKVRTSNLLFMGKNMNIGDPVRKHNGSIGSNNLFNGVSMSNGYIGNGGIMNG 209
Query: 119 HQPVSYN-YQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSH 177
+ ++YN +Q H HP+ Y P +P + H+L +G P NSG +
Sbjct: 210 NNGINYNGHQQKLHHHHPHGQIIYDPQQ-SPSQTQQQQL--HHLHHHG-P---NSG--GN 260
Query: 178 GQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDN-GLTSAAFPMIQPPHTAGVSDNFRT 236
+ P +T + HH YG N N ++F + +++N
Sbjct: 261 SPISTSLPSSTSSTPNI---ISAHH---YGNSNGNLNKVMSSFSSFNISDNSSINNNNNN 314
Query: 237 GSDNNSPAFSSN 248
+ N ++N
Sbjct: 315 NGNGNERQSANN 326
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 179 (68.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+WET + L YF +FGDI++ VV+ + +GRS+G+GFVTF DP + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 75 PSPMIGGRKAN---CN 87
+ GR + CN
Sbjct: 68 GPHTLDGRTIDPKPCN 83
Score = 39 (18.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 33/130 (25%), Positives = 44/130 (33%)
Query: 120 QPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQ 179
Q Y Y ++ P Y PG P ++ Y G YG NS S G
Sbjct: 244 QQQQYGYGNS--GPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNST--STGA 299
Query: 180 LGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDN-GLTSAAFPMIQP-----PHTAG-VSD 232
GG N+ + M + P G P G + + Q P T G V
Sbjct: 300 PSGPSGGGSWNS----WNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGG 355
Query: 233 NFRTGSDNNS 242
RTG N++
Sbjct: 356 MPRTGPGNSA 365
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLF+GGL+W T+ +LR F FGD+++A VI + TGRS+G+GFV F D G+A A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 75 -PSPMIGGRKANCNLAHLGRTRPDLP-SFG 102
+ GR N A+ RP P ++G
Sbjct: 96 MDGKELNGRHIRVNPAN---DRPSAPRAYG 122
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 71 RPHTLDGR 78
Score = 141 (54.7 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 46/147 (31%), Positives = 65/147 (44%)
Query: 6 GAEAD-SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G +D S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D
Sbjct: 82 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 141
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S +A I G+K A ++ P G P S +GS P +
Sbjct: 142 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP--GQPGASQ----WGS--RVVPNAA 193
Query: 125 NYQSAFMHPHPYWYTAYAP-GFFNPQG 150
N + P P W Y P G + P G
Sbjct: 194 NGWAG--QPPPTWQQGYGPQGMWVPAG 218
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 173 (66.0 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR YF Q+G++++ V++ K+T +S+G+GFV F+DP + +R +
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDP-NCVRTVLD 70
Query: 75 PSPM-IGGR 82
P + GR
Sbjct: 71 TKPHNLDGR 79
Score = 125 (49.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 68/240 (28%), Positives = 93/240 (38%)
Query: 3 GAYGAEADS-ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
G G+++DS ++K+FVGG+ LR YF +FG + E V+I R +G+GF+T
Sbjct: 101 GWKGSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 160
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQP 121
F S +A I G+K A PR S A P G G +Q
Sbjct: 161 FEAEQSVDQAVNMHFHDIMGKKVEVKKAE-------------PRDSKA-PAPGQLGANQW 206
Query: 122 VSYNYQSAF----MHPHPYWYTAYAP-GFFNPQGLYNPYVGQHY-LPL-YGAPGTVNSGM 174
SA P P W +Y P G + G P G LP GAP S
Sbjct: 207 GPRAIISAANGWAAQPAPTWQQSYGPQGVWVSTG--QPLAGYGPPLPAGRGAPAQAPSP- 263
Query: 175 YSHGQLGHHFPGGHDNTVVRGYGMLGHHIVP-----YGGPNDNGLTSAAFPMIQPPHTAG 229
++ + GG +GY G P +G P + + P PP T G
Sbjct: 264 FNAFLVAAPPTGGFG--APQGYPQQGFSTQPQFGYSFGTPQGDQFVAQGMP--PPPATPG 319
Score = 46 (21.3 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 139 TAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGH 188
+A+ F +P Y P GAP +S + GQ H+ G H
Sbjct: 357 SAFGHSFADPSQPTASYAAAPSAPSSGAPAAASS--FGRGQ-NHNVQGFH 403
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 167 (63.8 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
DS KLFVGG++WET+ D LR +F +G++ +A+V+ K TGR +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
Score = 113 (44.8 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
G +A + +K+FVGGL + R YFE +G + + ++ + T R +G+GFV+F
Sbjct: 102 GGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Score = 55 (24.4 bits), Expect = 7.4e-13, Sum P(2) = 7.4e-13
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTV 192
P W T + G+ NP G + Y AP T + YS+ G+ G D+
Sbjct: 296 PRNSWDTPASSGYGNP-GYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGSDSGY 354
Query: 193 VR--GYGMLGHHIVPYGGPNDN 212
YG++G P GG ++N
Sbjct: 355 GNQAAYGVVGGR--PSGGGSNN 374
Score = 54 (24.1 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVV-RGYGMLGHHIVPYGGPNDNGL-TSAAFPM 221
YG PG SG +H G+ PG T GY G+ Y G +D+G AA+ +
Sbjct: 308 YGNPG-YGSGA-AHS--GYGVPGAAPPTQSPSGYSNQGYGYGGYSG-SDSGYGNQAAYGV 362
Query: 222 IQPPHTAGVSDNFRTG 237
+ + G S+N +G
Sbjct: 363 VGGRPSGGGSNNPGSG 378
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++ + + NTGRS+G+GF+ F++PGS +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 61 KEHRLDGR 68
Score = 106 (42.4 bits), Expect = 0.00092, P = 0.00092
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF +FG+I EA+ + T + +G+ F+TF++ +
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVL 142
Query: 73 ANPSPMIGGRKANCNLA 89
+ G K +A
Sbjct: 143 EKKFHNVSGSKCEIKVA 159
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 38/89 (42%), Positives = 51/89 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+W T+ +L+ F FG++ EA VI + TGRS+G+GFV+F SA A
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 75 -PSPMIGGRKANCNLAHLGRTRPDLPSFG 102
+ GR+ NLA R+ SFG
Sbjct: 96 MDGKELNGRQIRVNLA-TERSSAPRSSFG 123
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 180 (68.4 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
K+F+GGL WET D+LR YFEQFG++L+ V+ TGRS+G+GF+TF++P
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
E K+FVGG+ + + R +F QFG +L+A ++ K+TGR +G+GFVT+ + +
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 68 ALRACANPSPMIGGR 82
+ P I G+
Sbjct: 301 VEATMSQPYITIHGK 315
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 167 (63.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 32/99 (32%), Positives = 55/99 (55%)
Query: 3 GAYGAEADSANR-----KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GA G + D++ K+FVGGL+W+T+ L+ YF +FG++ + + NTGRS+G+
Sbjct: 79 GADGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGF 138
Query: 58 GFVTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRP 96
GF+ F++P + A + GR+ + A + P
Sbjct: 139 GFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEP 177
Score = 120 (47.3 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 49/185 (26%), Positives = 74/185 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL ET + +R YF FG+I + + + +G+ F+TF++ + +
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHP 133
+ G K L + P + + FG G + Q+
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQQQYGGR-FGGGGRGRGRGGQGQNWNQGY 297
Query: 134 HPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHD-NTV 192
+ YW Y N QG Y Y GQ YG G + YS G G + GG+D N
Sbjct: 298 NNYWNQGYG----N-QG-YGGYGGQQGYGGYGGYGNYD---YSGGYYGGY--GGYDYNQG 346
Query: 193 VRGYG 197
YG
Sbjct: 347 NTSYG 351
Score = 48 (22.0 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 155 YVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
Y Q Y +G G G GQ G ++ G++N +GYG G+ YGG G
Sbjct: 268 YQQQQYGGRFGGGGR---GRGRGGQ-GQNWNQGYNNYWNQGYGNQGYG--GYGGQQGYG 320
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 178 (67.7 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 36/95 (37%), Positives = 57/95 (60%)
Query: 6 GAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFVTF
Sbjct: 11 GSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
D S + A P + + + +A R +P +
Sbjct: 71 DAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 137 (53.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 176 (67.0 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75
+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFVTF DP S + P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 76 SPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKM 83
Score = 137 (53.3 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 148 IHFHEINNKMVECKKA 163
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 45 VITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL--PSF 101
VIT + TG+S+GYGFVT D +A RAC +P+P+I GRKAN NLA+LG +P + P F
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGF 58
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 175 (66.7 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 3 GAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
G++G++ D K+F+GGL+W+T ++ LR YF +FG++ E +V+ T R++G+GF+TF
Sbjct: 37 GSHGSQ-DPG--KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF 93
Query: 63 RDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
DP S + N + G+K + +A RT+ L
Sbjct: 94 VDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKL 129
Score = 136 (52.9 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ + +K+F+GGL+ + + ++ YFE +G + +A+++ K T R +G+GFVTF
Sbjct: 127 AKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
Query: 67 SALRACANPSPMIGGRKANCNLAHLGRTRPDLP-SFGHPRPSSAAPLFGSP 116
A + C I G+ C A LP R ++A L+G P
Sbjct: 187 VADKVCEIHFHEINGKMVECKKAQPKEVM--LPVQLNKSRAAAARNLYGMP 235
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 54/166 (32%), Positives = 78/166 (46%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF DP
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASD 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLP--SFG-HPRPSSAAPLFGSPGH------ 118
A+RA S + GR+ + H G++ +FG H R S + G G+
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYD 118
Query: 119 HQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
+P Y Y + + + Y + G QG Y+ Y G +Y Y
Sbjct: 119 SRPGGYGY--GYGYGYGYGRSRDYGG--RSQGGYDRYSGGNYRDNY 160
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 171 (65.3 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GF+TF D S + A
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
P + + + +A R +P +
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKM 105
Score = 137 (53.3 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 37 (18.1 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 115 SPGHHQPVSYNYQSAFMHP-HPYWYT-AYAPGFFNPQG-LYNP 154
SP H P +++S+ +P P + A +PG P LY P
Sbjct: 309 SPSQHHPSPDHFKSSGANPPRPGGFPGANSPG---PVADLYGP 348
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 172 (65.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 62/210 (29%), Positives = 92/210 (43%)
Query: 2 AGAYGAEADSANR-KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
A + D++N +FVG L+ E N + L F FG + EA V+ TGRS+GYGFV
Sbjct: 163 AATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFV 222
Query: 61 TFRDPGSALRACAN-PSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGS-P-G 117
FRD A +A ++ +G R CN A+ + PS + SA + + P G
Sbjct: 223 AFRDRSDAEKALSSMDGEWLGSRAIRCNWAN----QKGQPSIAQQQAMSAVGMTPTTPFG 278
Query: 118 HHQPVSYNYQSAFM--HPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMY 175
HH ++ QS M + P + T G P N V PL+ G V +
Sbjct: 279 HHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVV-----PLFQNFGYVVESRF 333
Query: 176 SHGQLGHHF--PGGHDNTVVRGYGMLGHHI 203
+ G F H+N G+ G+++
Sbjct: 334 QADR-GFAFIKMDSHENAAQAICGLNGYNV 362
Score = 110 (43.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71
R L+VGGL D LR FE G + +I KN + YGFV + DPG+A RA
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDDPGAADRA 141
Score = 41 (19.5 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 23/81 (28%), Positives = 31/81 (38%)
Query: 102 GHP-RPSSAAPLFGS----P-GHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPY 155
G P PS+ P +G P G+ P S + F P P+ A G+ Q N
Sbjct: 399 GFPGTPSTYFPQYGGQFSGPQGNFGPNSAQSPAGFQQPMPFSNPPSAGGYGRGQQAPN-- 456
Query: 156 VGQHYLPLYGAPGTVNSGMYS 176
Q P G P N+ +S
Sbjct: 457 -AQWSSP-QGQPQNFNNNGFS 475
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 14/38 (36%), Positives = 15/38 (39%)
Query: 207 GGPNDNGLTSAAFPMIQPPHTAGVSDNFRTGSDNNSPA 244
GGP G S FP + G NF S SPA
Sbjct: 396 GGPGFPGTPSTYFPQYGGQFS-GPQGNFGPNSAQ-SPA 431
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 158 (60.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 54/161 (33%), Positives = 76/161 (47%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA-- 68
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 69 -LRACANPSPMIGGRKANCNLAHLGRTRPDLP--SFG-HPRPSSAAPLFGSPGHHQPVSY 124
+RA S + GR+ + H G++ +FG H R S + G G+ S
Sbjct: 63 VMRAMNGES--LDGRQIRVD--HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYG---SG 115
Query: 125 NYQSAFMHPHPYWYT-AYAPGFFNPQGLYNPYVGQHYLPLY 164
Y S P Y Y + + QG Y+ Y G +Y Y
Sbjct: 116 RYDS---RPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNY 153
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 173 (66.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 71 RPHTLDGR 78
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 70/235 (29%), Positives = 96/235 (40%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
+S + K+FVGG+ L+ YF +FG + E V+I R +G+GF+TF D S
Sbjct: 110 NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPS-SAAPLFGSPGHHQPVSYNYQS 128
+A I G+K A PR S S P G PG +Q S QS
Sbjct: 170 QAVNMHFHDIMGKKVEVKRAE-------------PRDSKSQTP--GPPGSNQWGSRAMQS 214
Query: 129 A---FMHPHPYWYTAYAP-GFFNPQGL----YNPYVGQHYLPLYG--APGTVNS--GMYS 176
+ P + Y+P G + P G Y G+ P AP V++ G +
Sbjct: 215 TANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYGQPAGRGGPPPPPSFAPFLVSTTPGPFP 274
Query: 177 HGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGVS 231
Q G FP G+ GYG G P P D ++S P PP T G +
Sbjct: 275 PPQ-G--FPPGYATPPPFGYGY-G----PPPPPPDQFVSSGVPP---PPGTPGAA 318
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 157 (60.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ FVGGLAW T+ L T F Q+GD++++ +I + TGRS+G+GFVTF+D
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 174 (66.3 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
E+ S KLF+GG++W+T+ + L+ YF ++GD++EAV++ + TGR++G+GF+ F DP
Sbjct: 9 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV 68
Query: 68 ALRACANPSPMIGGRKANCNLA 89
A R + +I GR A
Sbjct: 69 AERVIMDKH-IIDGRTVEAKKA 89
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/130 (30%), Positives = 57/130 (43%)
Query: 4 AYGAEADSAN-RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
++G A +K+FVGGL + YF+QFG I + VV+ NT R +G+GF+TF
Sbjct: 111 SHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 170
Query: 63 RDPGSALRACANPSPMIGGRKANCNLA---HLGRTRPDL-PSFGH-------PRPSSAAP 111
S + G+ A L T P+ P G+ P SSA
Sbjct: 171 DSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANS 230
Query: 112 LFGS--PGHH 119
F S PG++
Sbjct: 231 YFNSFPPGYN 240
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 174 (66.3 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 73/246 (29%), Positives = 101/246 (41%)
Query: 10 DSANR-KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
D++N +FVG L+ E N + L F FG + EA V+ TGRS+GYGFV FR+ A
Sbjct: 177 DTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADA 236
Query: 69 LRACAN-PSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGS-P-GHHQPVSYN 125
+A + +G R CN A+ + PS + +A + + P GHH ++
Sbjct: 237 EKALTSMDGEWLGSRAIRCNWAN----QKGQPSISQQQAMAAMGMTPTTPFGHHHFPTHG 292
Query: 126 YQSAFM--HPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPG-TVNSGMYSHGQLGH 182
QS M P W T G P N V PL+ G + + M +
Sbjct: 293 IQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIV-----PLFQNFGYVIETRMQADRGFAF 347
Query: 183 HFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLT-SAAFPMIQPPHTAGVSDNFRTGSDNN 241
H+N I G N NG ++ +PP G DNF G N
Sbjct: 348 IKMDTHENAASA--------ICQLNGYNVNGRPLKCSWGKDRPP--TGQFDNF-PGQQAN 396
Query: 242 SPAFSS 247
SP SS
Sbjct: 397 SPFASS 402
Score = 120 (47.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/74 (43%), Positives = 39/74 (52%)
Query: 2 AGAYGAEA--DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKG--Y 57
AG Y A + R L+VGGL D L+ FE G ++ +I KN SKG Y
Sbjct: 76 AGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFN-SKGANY 134
Query: 58 GFVTFRDPGSALRA 71
GFV F DPG+A RA
Sbjct: 135 GFVEFDDPGAAERA 148
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 160 YLPLYGAPG 168
Y P YG PG
Sbjct: 406 YFPQYGGPG 414
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 154 (59.3 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++ + + NTGRS+G+GF+ F+D S + +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 125 KEHRLDGR 132
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 50/185 (27%), Positives = 74/185 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E D +R YFE FG+I EA+ + T + +G+ F+TF++ +
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKIL 206
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G K +A +G R S G G Q ++N
Sbjct: 207 EKKFHNVSGSKCEIKIAQPKEVYQQ--QYGG-RGGSFGGRGGRGGKGQGQNWN------Q 257
Query: 133 PHPYWYTAYAP---GFFNPQGLYNPYVGQHY--LPLYG-APG-TVNSGMYSHGQLGHHFP 185
+ YW Y G + QG Y Y Y YG PG + G ++G+
Sbjct: 258 GYNYWNQGYGNQGYGGYGQQG-YGGYGNYDYSGYGYYGYGPGYDYSQGSANYGKAPRR-- 314
Query: 186 GGHDN 190
G H N
Sbjct: 315 GSHQN 319
Score = 54 (24.1 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGH 201
Y G N G +GQ G+ GG+ N GYG G+
Sbjct: 261 YWNQGYGNQGYGGYGQQGY---GGYGNYDYSGYGYYGY 295
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 167 (63.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++ + + NTGRS+G+GF+ F++PGS +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 61 KEHRLDGR 68
Score = 139 (54.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 52/184 (28%), Positives = 77/184 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF +FG+I EA+ + T + +G+ F+TF++ +
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVL 142
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLP-SFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFM 131
+ G K +A S G R S G G Q S N+ +
Sbjct: 143 EKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRGGAQ--SQNWNQGYG 200
Query: 132 HPHPYWYTAYA-PGFFNPQGLYNPYVGQHY--LPLYG-APG-TVNSGMYSHGQLGHHFPG 186
+ YW Y G+ QG Y Y G Y YG PG + G ++G+ G
Sbjct: 201 N---YWNQGYGNQGYGYQQG-YGGYGGYDYSGYGYYGYGPGYDYSQGSANYGKTPRR--G 254
Query: 187 GHDN 190
GH N
Sbjct: 255 GHQN 258
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 174 (66.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
G+ +D A KLFVGGL+W+T+SD L+ YF FG + + +++ T RS+G+GF+TF++P
Sbjct: 195 GSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEP 254
Query: 66 GSALRACANPSPMIGGRK 83
+ + P + G+K
Sbjct: 255 CTVEKVLKVPIHTLDGKK 272
Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG++ +T+++ ++ YF QFG + E V++ + T R +G+GFVTF + R C
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 74 NPSPMIGGRKANCNLA 89
I +K C A
Sbjct: 351 IHFHTIKNKKVECKKA 366
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 154 (59.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 50/160 (31%), Positives = 72/160 (45%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P +
Sbjct: 3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLP--SFGHPRPSSAAPLFGSPGHHQPVSY- 124
A+RA S + GR+ + H G++ +FG P G + Y
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKSARGSRGGAFGGYERGRGYPRGGGDQGYGSGRYD 118
Query: 125 NYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
N A+ + Y Y QG Y+ Y G +Y Y
Sbjct: 119 NRPGAYGFGYGYGYGRSRDYGGRSQGGYDRYSGGNYRDNY 158
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 154 (59.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGRKANCNLAHLGRT 94
N P + GR + LG T
Sbjct: 73 NARPHKVDGRVVEATMI-LGIT 93
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 154 (59.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 53/160 (33%), Positives = 74/160 (46%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLP--SFG-HPRPSSAAPLFGSPGHHQPVSY 124
A+RA S + GR+ + H G++ +FG H R S + G G+ S
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKSARGTRGGAFGAHGRGRSYSRGGGDQGYG---SG 115
Query: 125 NYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
Y S + Y Y QG Y+ Y G +Y Y
Sbjct: 116 RYDSR-PGGYGYGYGRSRDYSGRSQGGYDRYSGGNYRDNY 154
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 160 (61.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+GF+ F++ S R
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 75 PSPMIGGRK 83
+ GR+
Sbjct: 106 KEHRLDGRQ 114
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 47/173 (27%), Positives = 69/173 (39%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL ET + +R YF FG+I + T T + +G+ F+TF++ + +
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHP 133
+ G K +A FG G G Q + Y +
Sbjct: 189 KKYHNVCGSKCEIKIAQPKEIYQQ-QQFGARGGGFGGRGRGRGGPGQSWNQGYNN----- 242
Query: 134 HPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVN--SGMYSHGQLGHHF 184
YW Y G QG Y Y GQ YG G + SG Y +G G+ +
Sbjct: 243 --YWNQGYG-G----QG-YG-YGGQQGYGGYGGYGNYDYSSGYYGYGS-GYDY 285
Score = 42 (19.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 164 YGAPGTVNSGM-YSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
+GA G G G G + G++N +GYG G+ YGG G
Sbjct: 215 FGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYG---YGGQQGYG 262
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 153 (58.9 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 55/162 (33%), Positives = 75/162 (46%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLPS--FG-HPRPSSAAPLFGSPGHHQPVSY 124
A+RA S + GR+ + H G++ FG H R S + G G+ Y
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG-RY 117
Query: 125 NYQSAFMHPHPYWYTAYAPGFFNP--QGLYNPYVGQHYLPLY 164
Y S P Y Y +N QG Y+ Y G +Y Y
Sbjct: 118 -YDS---RPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 153 (58.9 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 51/159 (32%), Positives = 70/159 (44%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
S KLFVGGL + T L +F FG I E VV+ T RS+G+GF+TF +P A
Sbjct: 3 SEEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASN 62
Query: 71 AC-ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSA 129
A A + GR+ + + H G++ + G + GH S Y S
Sbjct: 63 AMRATNGESLDGRQIHVD--HAGKSARG--TRGGAFEAHGHGYSRGRGHQSYGSSRYDSL 118
Query: 130 FMHPHPYWYTAYAPG----FFNPQGLYNPYVGQHYLPLY 164
P Y Y Y G + + QG Y+ Y G +Y Y
Sbjct: 119 ---PGGYGY-GYGYGRSRDYGSSQGSYDRYSGGNYRDNY 153
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 171 (65.3 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLF+GG++W+T+ + LR YF +GD++EAV++ + TGR++G+GF+ F DP + R +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 75 PSPMIGGRKANCNLA 89
+I GR A
Sbjct: 67 KH-IIDGRTVEAKKA 80
Score = 139 (54.0 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 63/242 (26%), Positives = 101/242 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL + + YF+QFG I + VV+ NT R +G+GF+TF + R
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHP 133
+ G+ L + R P S P + +PL + G V+Y S M
Sbjct: 170 KTFHELNGK-----LVEVKRAVPKEIS---PVSNIRSPL--ASG----VNYGGGSNRMPA 215
Query: 134 HPYWYT-AYAPGFFN---PQGL-YNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGH 188
+ Y+ A PGF+N P G ++P +G A G+ +H + P
Sbjct: 216 NSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGR----NAVSAFGLGL-NHDLSLNLNPSCD 270
Query: 189 DNTVVRGYGMLGHHIVPY-GGPNDNGLTSA-AFPMIQPPHTAGVSDNFRTGSDNNSPAFS 246
+ GY + + PY G + N TS + P+ + D + +D P ++
Sbjct: 271 GTSSTFGYNRIPSN--PYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWN 328
Query: 247 SN 248
N
Sbjct: 329 LN 330
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 166 (63.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 71/258 (27%), Positives = 108/258 (41%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ + A+ +K+FVGGL SD R YFE +G + +AV++ + T R +G+GFV+F
Sbjct: 101 FDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSY 124
S + G++ A P + S G R S A G PG+
Sbjct: 161 EDSVDLVLHKTFHDLNGKQVEVKRALPKDANPGIAS-GGGRGSGGAG--GFPGYGGSGGS 217
Query: 125 NYQ-----SAFMHPH-------PYWYTAYAPGF-FNPQGL-YNPYVGQHYLPL---YGAP 167
Y+ + +M P PY + Y G+ + G+ Y + G + P YG P
Sbjct: 218 GYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGF-GGYGNPAGAPYGNP 276
Query: 168 GTVNSGMYS--HGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAFPMIQPP 225
+G S G P G+ N GYG + P+GG G SA M Q
Sbjct: 277 SVPGAGFGSGPRSSWGAQAPSGYGNV---GYG----NAAPWGGSGGPG--SAV--MGQAG 325
Query: 226 HTAGV-SDNFRTGSDNNS 242
+AG S + G +++S
Sbjct: 326 ASAGYGSQGYGYGGNDSS 343
Score = 165 (63.1 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
+S KLF+GG++W+T+ + LR YF FG++L+ V+ K TGR +G+GFV F DP
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 39 (18.8 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 164 YGAPGTVNS-GMYSHGQLGHHFPGGHDNTVVRGYGMLGHH 202
YG P + G S +H GG+ + + G G G+H
Sbjct: 344 YGTPSAYGAVGGRSGNMPNNHGGGGYADAL-DGSGGYGNH 382
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 160 (61.4 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 53 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 112
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 113 GFILFKDAASVEKVLDQKEHRLDGR 137
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 49/186 (26%), Positives = 78/186 (41%)
Query: 14 RKLFVGGLAWET-NSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRA 71
+K+FVGGL E+ + +R YF +FG+I EA+ + + +G+ F+TF++ +
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Query: 72 CANPSPMIGGRKANCNLAHLGRT--RPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSA 129
+ G K +A + S G + G G S ++
Sbjct: 212 LEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQG 271
Query: 130 FMHPHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPL--YG-APG-TVNSGMYSHGQLGHHF 184
+ + YW Y G+ QG Y P Y G Y P YG PG + G ++G+
Sbjct: 272 YGN---YWNQGY--GY--QQG-YGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRR- 322
Query: 185 PGGHDN 190
GGH N
Sbjct: 323 -GGHQN 327
Score = 42 (19.8 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
YG+ G N + G G GG + +GYG
Sbjct: 240 YGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG 273
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 152 (58.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 68
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 69 NARPHKVDGR 78
Score = 114 (45.2 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72
N K+FVG + +T LR YF Q+G ++T + +G+ +G+ FVTF D S +
Sbjct: 99 NMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIV 158
Query: 73 ANPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 159 IQKYHTVNGH--NCEV 172
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 152 (58.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 152 (58.6 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 53/160 (33%), Positives = 75/160 (46%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLP--SFGHPRPSSAAPLFGSPGHHQPVSYN 125
A+RA S + GR+ + H G++ +FG R S + G G+ S
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKSARGSRGGAFGG-RGRSYSRGGGDQGYG---SGR 114
Query: 126 YQSAFMHPHPYWYT-AYAPGFFNPQGLYNPYVGQHYLPLY 164
Y S P Y Y + + QG Y+ Y G +Y Y
Sbjct: 115 YDS---RPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNY 151
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 166 (63.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
K+F+GGL WET +L+ YF QFG++ E V+ TGRS+G+GF+TF+DP
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDP 161
Score = 137 (53.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGG++ E + +F QFG +++A ++ K+TGR +G+GFVTF + A +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 75 PSPMIG 80
P ++G
Sbjct: 255 PLEILG 260
Score = 40 (19.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 157 GQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPY 206
GQ P AP +G + G+ G ++ GG RG G G H PY
Sbjct: 515 GQTPQPQGAAPANAPTGPKNAGKPGANYRGGG-----RG-GHRGFH--PY 556
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 150 (57.9 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLF+GGL ++TN ++L F ++G I E VV+ + T RS+G+GFVTF +P A A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 74 NPSPMIGGRKANCNLAHLGRTRPD 97
+ GR+ + A G++ D
Sbjct: 66 MNGKAVDGRQIRVDQA--GKSSGD 87
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 149 (57.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
+ FVGGL W T+ +L+ F ++GD++++ +IT + TGRS+G+GFVTF + +A A
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 74 NPSPMIGGRKANCNLAHLGRT 94
+ GR N A R+
Sbjct: 67 MNGQDLDGRNITVNEAQSRRS 87
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 149 (57.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71
+ K++VG L+++ +D L+++F Q+G+I EA +I + TGRSKG+ F+T+ +A A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 72 CANPSPM-IGGRKANCNLA--HLGRTRPDLPSFG 102
+ + + + GRK N+A + G R D S G
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDRRRDGGSGG 109
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 149 (57.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71
+ K++VG L+++ +D L+++F Q+G+I EA +I + TGRSKG+ F+T+ +A A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 72 CANPSPM-IGGRKANCNLA--HLGRTRPDLPSFG 102
+ + + + GRK N+A + G R D S G
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDRRRDGGSGG 109
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 148 (57.2 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
KLF+GGLAW T D LR F ++G I EAVV+ ++T RS+G+GFV F
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRF 50
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 147 (56.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
S + KLF+GGL+W + +L+ F FG++ E + K +GRS+G+GFV F + G AL
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 71 A 71
A
Sbjct: 98 A 98
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 67/217 (30%), Positives = 94/217 (43%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EA + +K+FVGGL + L +F QFG I ++ VIT K+TG+ +G+GFV F D S
Sbjct: 93 EALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDS 152
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQ 127
A +A MI G K A T+ ++ + G R G G + N Q
Sbjct: 153 ADKAVVLKFHMINGHKVEVKKA---LTKQEIQAAGGARGGRGRG--GGRG----MGRN-Q 202
Query: 128 SAFMHPHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPLYGAP-GTVNSGMYSHGQLGHHFP 185
+ F Y Y G+ G + Y G + YG G G Y Q+G +
Sbjct: 203 NGFGGGRGGGYGGYGGGYGGGYGGNDGGYGGSYGSGGYGGGYGGGYGGGYGE-QMGG-YG 260
Query: 186 GGHD-NTVVRGYGMLGHHIVPYGGPND-NGLTSAAFP 220
GG+D + GYG P G N G + A +P
Sbjct: 261 GGNDYSDFGSGYGQQSSGYGPMKGGNTYGGRSGAPYP 297
Score = 139 (54.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL +T +D LR+YFEQFG++ + VV+ + RS+ +GFVT+ A A A
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 75 PSPMIGGRKANCNLA 89
++ G+ A
Sbjct: 69 RPHVVDGKNVEVKRA 83
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 161 (61.7 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRSKG+
Sbjct: 48 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGF 107
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 108 GFILFKDAASVEKVLDQKEHRLDGR 132
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 146 (56.5 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GS 67
S KLFVGGL + T+ L +F FG I E VV+ + T RS+G+GF+TF +P +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRT 94
A+RA S + GR+ + H G++
Sbjct: 63 AMRAMNGES--LDGRQIRVD--HAGKS 85
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 160 (61.4 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 54 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 114 GFILFKDAASVEKVLDQKEHRLDGR 138
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 160 (61.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 54 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 114 GFILFKDAASVEKVLDQKEHRLDGR 138
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 160 (61.4 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 59 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 118
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 119 GFILFKDSSSVEKVLDQKEHRLDGR 143
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 160 (61.4 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 59 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 118
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 119 GFILFKDSSSVEKVLDQKEHRLDGR 143
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 158 (60.7 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+GF+ F+D S +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 61 KEHRLDGR 68
Score = 120 (47.3 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 53/188 (28%), Positives = 78/188 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF +FG+I EA+ + + + +G+ F+TF++ +
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVL 142
Query: 73 ANPSPMIGGRKANCNLA-----HLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQ 127
I G K C L L R L R G G S ++
Sbjct: 143 EKKFHTISGSK-RCGLGVGLPLQLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWN 201
Query: 128 SAFMHPHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPL--YG-APG-TVNSGMYSHGQLGH 182
+ + YW Y G+ QG Y P Y G Y P YG PG + G ++G+
Sbjct: 202 QGYGN---YWNQGY--GY--QQG-YGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQR 253
Query: 183 HFPGGHDN 190
GGH N
Sbjct: 254 R--GGHQN 259
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 154 (59.3 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC- 72
RKLF+GGL++ET ++LR +FEQ+G + + VV+ NT RS+G+GFVT+ G A
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 73 ANPSPMIG 80
A P + G
Sbjct: 98 ARPHKVDG 105
Score = 138 (53.6 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
A S +K+FVGG+ +T+ + LR YF QFG I E ++T KN+ + +G+ F+TF D +
Sbjct: 124 AHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAV 183
Query: 69 LRACANPSPMIGGRKANCNL 88
R + G NC +
Sbjct: 184 DRIVIQKYHTVNGH--NCEV 201
Score = 45 (20.9 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 144 GFFNPQGLYNPYVGQHYLPL----YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
G +N G YN +Y P+ YG G G G G + GG GYG
Sbjct: 338 GDYNDFGNYNNQSSSNYGPMKGGNYGGGGG-GGGRSGGGPYGGGYGGGSGGG--GGYG 392
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG+ G G Q G + GG+DN G G G +GG N G
Sbjct: 289 YGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGGGGGGGG--NFGGGNFGG 336
Score = 41 (19.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 22/70 (31%), Positives = 26/70 (37%)
Query: 144 GFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHI 203
G+ G YN Y G + YG G G +G G GG GYG G
Sbjct: 259 GYGGGDG-YNGYGGGN--GGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGG--- 312
Query: 204 VPYGGPNDNG 213
Y N+NG
Sbjct: 313 --YDNYNNNG 320
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 143 (55.4 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL +ET ++L F ++G + E VV+ + + RS+G+GFVTF +P A A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLAHLGRTRPD 97
+ GR+ + A G++ D
Sbjct: 67 MNGKSVDGRQIRVDQA--GKSSND 88
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 143 (55.4 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+++T+ L T F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 75 PS-PMIGGRKANCNLAHLGRTRPD 97
+ + GR+ + A G++ D
Sbjct: 67 MNGKTVDGRQIRVDQA--GKSSND 88
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 160 (61.4 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 54 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 114 GFILFKDAASVEKVLDQKEHRLDGR 138
Score = 120 (47.3 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 51/183 (27%), Positives = 77/183 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF +FG+I EA+ + + +G+ F+TF++ +
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G K +A R + GS G Q S+N + +
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGG-QSQSWN--QGYGN 269
Query: 133 PHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPL--YG-APG-TVNSGMYSHGQLGHHFPGG 187
YW Y G+ QG Y P Y G Y P YG PG + G ++G+ GG
Sbjct: 270 ---YWNQGY--GY--QQG-YGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRR--GG 319
Query: 188 HDN 190
H N
Sbjct: 320 HQN 322
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 161 (61.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 27/64 (42%), Positives = 46/64 (71%)
Query: 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ + + S+ KLFVGG++WET ++T YF +FG+++++V++T + TG +G+GFVTF D
Sbjct: 57 HSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD 116
Query: 65 PGSA 68
A
Sbjct: 117 SAVA 120
Score = 161 (61.7 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 67/213 (31%), Positives = 92/213 (43%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+A S RK+FVGGL D L+ YF +GDI+E ++ +TGRS+G+GFVTF+ S
Sbjct: 151 KAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 210
Query: 68 ALRACANPSPM-IGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNY 126
R ++ +G ++ A RT D SF R A+ + + +
Sbjct: 211 VDRLFSDGKVHELGDKQVEIKRAEPKRTGRD-NSF---RSYGASGKYDQEDSYSGKANED 266
Query: 127 QSAFMHPHPYW-YTAYAPG-FFNPQGLYNPYVGQHYLPLYGAPGTV-NSGMYSHGQLGHH 183
S + Y Y AYA NP G Y Y G Y YG G + N G Y G H
Sbjct: 267 YSMYSGYGGYGGYGAYAGNSMVNPAGFYG-Y-GGGYGYGYGYGGQMFNMG-YGAGGYSH- 322
Query: 184 FPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTS 216
G+ YG H G +NG +S
Sbjct: 323 MGSGYGVAAAAAYGGGKSH-----GNGNNGSSS 350
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 160 (61.4 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 58 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 117
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 118 GFILFKDSSSVEKVLDQKEHRLDGR 142
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 52/183 (28%), Positives = 77/183 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF QFG+I EA+ + + +G+ F+TF++ +
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 216
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G K +A R + GS G Q S+N + +
Sbjct: 217 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGG-QSQSWN--QGYGN 273
Query: 133 PHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPL--YG-APG-TVNSGMYSHGQLGHHFPGG 187
YW Y G+ QG Y P Y G Y P YG PG + G ++G+ GG
Sbjct: 274 ---YWNQGY--GY--QQG-YGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRR--GG 323
Query: 188 HDN 190
H N
Sbjct: 324 HQN 326
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 160 (61.4 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 59 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 118
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 119 GFILFKDSSSVEKVLDQKEHRLDGR 143
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 52/183 (28%), Positives = 77/183 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT-HKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E + +R YF QFG+I EA+ + + +G+ F+TF++ +
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G K +A R + GS G Q S+N + +
Sbjct: 218 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGG-QSQSWN--QGYGN 274
Query: 133 PHPYWYTAYAPGFFNPQGLYNP-YVGQHYLPL--YG-APG-TVNSGMYSHGQLGHHFPGG 187
YW Y G+ QG Y P Y G Y P YG PG + G ++G+ GG
Sbjct: 275 ---YWNQGY--GY--QQG-YGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRR--GG 324
Query: 188 HDN 190
H N
Sbjct: 325 HQN 327
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 158 (60.7 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 54 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 113
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 114 GFILFKDATSVEKVLDQKEHRLDGR 138
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 152 (58.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 40 (19.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 144 GFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHI 203
G F+ +G+ + Y G +G G+ G S+ G++ + ++G G
Sbjct: 220 GNFSGRGIGDGYNG------FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSS 273
Query: 204 VPYGG 208
PYGG
Sbjct: 274 GPYGG 278
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 142 (55.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 49 KNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHLG 92
+ G+S+GYGFVT D +A RAC +P+P+I GRKAN NLA+LG
Sbjct: 3 RQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 46
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 142 (55.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 49 KNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHLG 92
+ G+S+GYGFVT D +A RAC +P+P+I GRKAN NLA+LG
Sbjct: 2 RQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 45
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+GF+ F+D S +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 75 PSPMIGGR 82
+ GR
Sbjct: 149 KEHRLDGR 156
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 68/207 (32%), Positives = 90/207 (43%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL + + L+ YF QFG I +A VIT K+TG+ +G+GFV F D SA +A
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAA------PLFGSPGHHQPVS-YNY 126
I G K A T+ ++ S G R FG G + Y Y
Sbjct: 157 MKFHSICGHKVEVKKA---LTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGYYNDYGY 213
Query: 127 QS-AFMHPHPY-WYTAYAPGFFNPQGL-Y---NPY--VGQHY---LPLYGAPGTVNSGMY 175
Q+ F + Y Y G+ + G Y N Y G+ Y YGA T G Y
Sbjct: 214 QNNGFGNNSGYDSQNGYGGGYSDQMGGGYGNGNGYSDFGEGYGQQASGYGAMKT-GYGNY 272
Query: 176 SHG-QLGHHFPGGHDNTVVRGYGMLGH 201
S G Q +P G GYG G+
Sbjct: 273 SSGRQSSGPYPRGGGGGGSGGYGRGGY 299
Score = 121 (47.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL +T + LR +FEQ+G + + VV+ ++ RS+ +GFVT+ A A +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 75 PSPMIGGRKANCNLA 89
++ G + A
Sbjct: 67 RPHIVDGNNVDLKRA 81
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 156 (60.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 3 GAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
G Y ++ RKLF+GGL+ +T + L YF Q+G +++A+VI NT S+G+GFVTF
Sbjct: 59 GQYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
Query: 63 RDPGSALRACANPSPMIGGRKANCNLA 89
SA A + +GG+ + A
Sbjct: 119 ASIFSAESAMNDRPHKLGGKTVDSKRA 145
Score = 36 (17.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 127 QSAFMHPHPYWYTAYAPG 144
Q + M P P++ T APG
Sbjct: 150 QMSSMIPPPFFETDPAPG 167
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 142 (55.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++ S +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 75 PSPMIGGRKANCNLAHLGRTR 95
+ G+ + A +T+
Sbjct: 115 KEHKLNGKVIDPKKAKAMKTK 135
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 49/185 (26%), Positives = 81/185 (43%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF+ +G++ E++ + +N T + +G+ F+TF++ +
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEV-ESIELPMENKTNKRRGFCFITFKEEEPVKKIM 197
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
IG K +A +G R + G G +Q N+ + +
Sbjct: 198 EKKYHNIGLSKCEVKVAMSKEQYQQQQQWGG-RGGYTSRGRGRGGPNQ----NWNQGYGN 252
Query: 133 PHPYW---YTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPG 186
YW Y Y +N QG Y Y G Y G G YS+ Q G+ G
Sbjct: 253 ---YWNQGYGNYGNYGYNNQG-YGGYGGYDYS---GYNNYYGYGDYSNQQSGYGKSQRRG 305
Query: 187 GHDNT 191
GH N+
Sbjct: 306 GHQNS 310
Score = 53 (23.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/76 (25%), Positives = 28/76 (36%)
Query: 138 YTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
YT+ G P +N G ++ YG G +G G + G++N GYG
Sbjct: 232 YTSRGRGRGGPNQNWNQGYGNYWNQGYGNYGNYGYNNQGYGGYGGYDYSGYNNYY--GYG 289
Query: 198 MLGHHIVPYGGPNDNG 213
+ YG G
Sbjct: 290 DYSNQQSGYGKSQRRG 305
Score = 36 (17.7 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHH 202
+G G S G ++ G+ N +GYG G++
Sbjct: 226 WGGRGGYTSRGRGRGGPNQNWNQGYGNYWNQGYGNYGNY 264
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 152 (58.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EKVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 128 (50.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 40 (19.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G + PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSLGPYGG 291
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 153 (58.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET D+LR +FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTY 81
Score = 131 (51.2 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDI-LEAVVITHKNTGRSKGYGFVTFRDPGS 67
A + +K+FVGG+ +T + LR YF+QFG I + +++ HK TG +G+ FVTF D S
Sbjct: 119 AHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHK-TGNKRGFAFVTFDDHDS 177
Query: 68 ALRACANPSPMIGGRKANCNL 88
R + G NC +
Sbjct: 178 VDRIVIQKYHTVNGH--NCEV 196
Score = 44 (20.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG G G + +G G + GG+ GY + +GG N G
Sbjct: 305 YGGGG---GGGHGYGNQGGGYGGGNSGGGGGGYNNYNNGNGNFGGGNFGG 351
Score = 40 (19.1 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
G G G + G G++F GG GYG
Sbjct: 239 GGGGGNRDGYFGRGGRGNNFGGGGGGG---GYG 268
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 144 (55.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 20 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 79
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+ S + + G+ + A +T+
Sbjct: 80 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 111
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 40/148 (27%), Positives = 65/148 (43%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 173
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 174 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 229
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHY 160
YW Y +N QG Y Y G Y
Sbjct: 230 ---YWNQGYGNYGYNSQG-YGGYGGYDY 253
Score = 45 (20.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 226 GYSNYWNQGYGNYGYNSQGYGG 247
Score = 37 (18.1 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGY 196
G Y + G+ GG+D T Y
Sbjct: 236 GNYGYNSQGYGGYGGYDYTGYNNY 259
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 157 (60.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 50/153 (32%), Positives = 72/153 (47%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75
+FVGG+ N +R+YFEQ+G + E +IT + TG SKGYGFV+F D + +
Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96
Query: 76 SPMIGGRKANCNLAHLGRTRPDLPSFGHPRP---SSAAPLFGSPGHHQPV-SYNYQSAFM 131
+ G R L R + +L S+ PRP + AP F S +Q +Y A +
Sbjct: 97 ISVHGKR---LKLGPAIRKQQNLCSYMQPRPLAFNPPAPQFHSVWSNQNTETYVQPQAVV 153
Query: 132 HPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
P + YA + +P L V Y P Y
Sbjct: 154 SPLTQYVQTYA--YSSPAVLIQQQVPVGYQPAY 184
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLF+GGL +ETN D L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 153 (58.9 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 65
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 66 NARPHKVNGR 75
Score = 117 (46.2 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YF Q+G ++T + +G+ +G+ FVTF D S +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVI 157
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 158 QKYHTVNGH--NCEV 170
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 152 (58.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 91
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 92 NARPHKVDGR 101
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 124 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 183
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 184 QKYHTVNGH--NCEV 196
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 154 (59.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N +P + GR
Sbjct: 73 NTTPHKVDGR 82
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVKGH--NCEV 177
Score = 36 (17.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 156 (60.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 50/153 (32%), Positives = 72/153 (47%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75
+FVGG+ N +R+YFEQ+G + E +IT + TG SKGYGFV+F D + +
Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96
Query: 76 SPMIGGRKANCNLAHLGRTRPDLPSFGHPRP---SSAAPLFGSPGHHQPV-SYNYQSAFM 131
+ G R L R + +L S+ PRP + AP F S +Q +Y A +
Sbjct: 97 ISVHGKR---LKLGPAIRKQQNLCSYMQPRPLAFNPPAPQFHSVWTNQNTETYVQPQAVV 153
Query: 132 HPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
P + YA + +P L V Y P Y
Sbjct: 154 SPLTQYVQTYA--YSSPAVLIQQQVPVGYQPAY 184
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 2 AGAYGAEADSANR-----KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKG 56
A + GA+ D++ K+F+GGL+W+T L+ YF +FG++++ + TGRS+G
Sbjct: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
Query: 57 YGFVTFRDPGSALRACANPSPMIGGR 82
+GFV F++ S + + G+
Sbjct: 121 FGFVLFKESESVDKVMDQKEHKLNGK 146
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 36/98 (36%), Positives = 54/98 (55%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65
Query: 75 PSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPL 112
+ G+ + L R+ P + GHP + + PL
Sbjct: 66 ---AMNGK---VRIRVLSRS-P-VSRMGHPPANPSRPL 95
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRK 83
+ GR+
Sbjct: 67 MNGKSVDGRQ 76
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 140 (54.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 154 (59.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL +ET ++LR++FEQ+G + E VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
++ S K+FVGG+ +T LR Y EQ+G I ++T + +G+ +G+ FVTF D
Sbjct: 94 DSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 150
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 140 (54.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIML 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFG 114
I G +A A +R ++ PR P FG
Sbjct: 172 QKYHAINGHRAEVGKA---LSRQEMKEIQGPRSRKGGP-FG 208
Score = 138 (53.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL+ ET ++L+ Y++Q+G++ + VVI + +S+G+GFVTF A A
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 55 (24.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 25/81 (30%), Positives = 33/81 (40%)
Query: 138 YTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
Y Y G F Y G++ PG N +S G G++F G +D YG
Sbjct: 259 YPCYGGGNFGGYPCYGGGGGEY---AGRRPGYGNQWEFSGGGYGNNF-GNYDQQP-SNYG 313
Query: 198 ML-------GHHIV-PYGGPN 210
+ G +IV PYGG N
Sbjct: 314 PMRNGIFGVGRNIVAPYGGGN 334
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 147 (56.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 8 EADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
EA +A R K+F+GGL+W+T L+ YF +FGD+++ + TGRS+G+GFV F++
Sbjct: 86 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE 145
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTR 95
S + + G+ + A +T+
Sbjct: 146 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
Score = 138 (53.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 239 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 294
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 295 ---YWNQGYGSYGYNSQG-YGGYGGYDYT---GYNSYYGYGDYSNQQSGYGKVSRRGGHQ 347
Query: 190 NT 191
N+
Sbjct: 348 NS 349
Score = 46 (21.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 291 GYSNYWNQGYGSYGYNSQGYGG 312
Score = 41 (19.5 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 301 GSYGYNSQGYGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRG 344
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 147 (56.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 8 EADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
EA +A R K+F+GGL+W+T L+ YF +FGD+++ + TGRS+G+GFV F++
Sbjct: 86 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE 145
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTR 95
S + + G+ + A +T+
Sbjct: 146 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
Score = 138 (53.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 238
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 239 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 294
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 295 ---YWNQGYGSYGYNSQG-YGGYGGYDYT---GYNSYYGYGDYSNQQSGYGKVSRRGGHQ 347
Query: 190 NT 191
N+
Sbjct: 348 NS 349
Score = 46 (21.3 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 291 GYSNYWNQGYGSYGYNSQGYGG 312
Score = 41 (19.5 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 301 GSYGYNSQGYGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRG 344
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 152 (58.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 146 (56.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 4 AYGAEADSANR-----KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYG 58
A GA+ D++ K+F+GGL+W+T L+ YF +FGD+++ + TGRS+G+G
Sbjct: 61 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 120
Query: 59 FVTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
FV F++ S + + G+ + A +T+
Sbjct: 121 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 157
Score = 138 (53.6 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 219
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 220 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 275
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 276 ---YWNQGYGSYGYNSQG-YGGYGGYDYT---GYNSYYGYGDYSNQQSGYGKVSRRGGHQ 328
Query: 190 NT 191
N+
Sbjct: 329 NS 330
Score = 46 (21.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 272 GYSNYWNQGYGSYGYNSQGYGG 293
Score = 41 (19.5 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 282 GSYGYNSQGYGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRG 325
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 155 (59.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 63/209 (30%), Positives = 86/209 (41%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EA + +K+F+GGL + D LR F QFG + +A VIT K TG+ +G+GFV F D S
Sbjct: 95 EALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDS 154
Query: 68 ALRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVS-YNY 126
A +A MI G K A T+ ++ + G R G G +P + Y
Sbjct: 155 ADKAVVLKFHMINGHKVEVKKA---LTKQEMQAAGS-RGGGRGGRGGGRGMGRPQNGYGG 210
Query: 127 QSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGHHFP 185
+ Y Y G + Y G Y YG G G Y G + F
Sbjct: 211 RGG-------GYGNYGGGGYGGNDGYGGGYGGGYGGGYGGGYGDQMEG-YGGGNGYNDFG 262
Query: 186 GGHDNTVVRGYG-MLGHHIVPYGGPNDNG 213
G+ GYG M G++ P G
Sbjct: 263 SGYGQQS-SGYGPMKGNYSGRSNAPYSRG 290
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
A+ ++ KLFVGGL +T D LR +FEQ+G + + VV+ ++ RS+ +GFVT+ P
Sbjct: 3 AQMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPD 62
Query: 67 SALRAC-ANPSPMIG 80
A A A P + G
Sbjct: 63 EADSAMSARPHILDG 77
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 156 (60.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKM 84
Score = 138 (53.6 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + C
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 149 IHFHEINNKMVECKKA 164
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 138 (53.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 152 (58.6 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 143 (55.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71
++ KLF+GG+A+ + D+LR F ++G++++ VI + TGRS+G+GFVTF +A A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 72 C-ANPSPMIGGRKANCNLAH 90
A + GR N A+
Sbjct: 98 IQALDGRDLHGRVVKVNYAN 117
Score = 47 (21.6 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 164 YGAPGTVNSGMYSHGQLGHHF--PGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG G G +G G + GG+ GYG G+ YGG G
Sbjct: 137 YGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYG--GNAAGGYGGSGAGG 186
Score = 44 (20.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
G G SG Y G G+ GG+ GYG G+ YGG
Sbjct: 133 GGGGYGGSGGYGGGAGGYGGSGGYGGGA-GGYG--GNSGGGYGG 173
Score = 42 (19.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYG--MLGH 201
YG G G S G G + GG+ + GYG GH
Sbjct: 156 YGG-GAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGH 194
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 138 (53.6 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + C
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 137 (53.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + C
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 137 (53.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + C
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 137 (53.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + C
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 156 (60.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YFEQF + +A+++ K T R +G+GFVTF + C
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 139 (54.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 54/192 (28%), Positives = 84/192 (43%)
Query: 3 GAYGAEA-DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
GA G ++ D +K+FVGG+ D L+ +F ++G+++E VI T RS+G+GFV
Sbjct: 97 GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVI 156
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL----PSFG-HPRPSSAAPLFGSP 116
F D + + MI + + L PS+G HPR S+ + S
Sbjct: 157 F-DSEEVVDELLSKGNMIDMADTQVEIKK-AEPKKSLNRSPPSYGSHPRGRSSNDSYASY 214
Query: 117 GHHQPVSYNYQSAFMHP------HPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTV 170
G P + + HP H + YA G+ +G P G Y YG G++
Sbjct: 215 GG--PYG-GFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNN-YGG-GSL 269
Query: 171 NSGMYSHGQLGH 182
G + LG+
Sbjct: 270 G-GYRNEPPLGY 280
Score = 129 (50.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 22/69 (31%), Positives = 45/69 (65%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL +T + +F ++G+I ++V++ ++TG+ +G+GF+TF DP S +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP-SVVDKVIE 78
Query: 75 PSPMIGGRK 83
+ +I G++
Sbjct: 79 DTHVINGKQ 87
Score = 67 (28.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 41/159 (25%), Positives = 57/159 (35%)
Query: 81 GRKANCNLAHLGRTRPDLPS-FGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHPH-PYWY 138
GR +N + A G +GHP P G P Y Y + P Y
Sbjct: 204 GRSSNDSYASYGGPYGGFDGGYGHP-PGPIRS-HGGPASRYAGGYGYGRGSVGPEFGGGY 261
Query: 139 TAYAPGFFNPQGLYN-PYVGQHYLPLYGAPGTVNSGM-YSHGQLGHHFPGGHDNTVVRGY 196
Y G G N P +G Y +G G+ G Y G G + G+ GY
Sbjct: 262 NNYGGGSLG--GYRNEPPLG--YSSRFGPYGSGFGGEGYGRGGEGAYL--GYPRGGGEGY 315
Query: 197 GMLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGVSDNFR 235
G G+ YGG ++G ++ P+ G S + R
Sbjct: 316 G--GYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSR 352
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 152 (58.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 93
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 94 NARPHKVDGR 103
Score = 127 (49.8 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 126 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 185
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 186 QKYHTVNGH--NCEV 198
Score = 39 (18.8 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
G G+ G S+ G++ + ++G G PYGG G +S++
Sbjct: 322 GGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGGYGGSSSS 375
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 154 (59.3 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+GF+ F+D S
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 135
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 152 (58.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Score = 36 (17.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
+G G+ G S+ G++ + ++G G PYGG
Sbjct: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 291
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 156 (60.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 42/116 (36%), Positives = 58/116 (50%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
AEAD KLF+GGL ET+ L YF +FG I E +++ + T +S+G+ FVT+ +PG
Sbjct: 2 AEADRPG-KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 67 SALRACA--NPSPMIGGRKANCNLAHLGRTRPDLPSFGH---PRPSSAAPLFGSPG 117
A A N P+ G+ A T+P + G P P S P G G
Sbjct: 61 DAKDAAREMNGKPL-DGKPIKVEQA----TKPQFETSGRRGPPPPRSRGPSRGLRG 111
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 152 (58.6 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 145 (56.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
K+F+GGL+W+T+ L Y +FG++L+ + T TGRS+G+GFV F+D S R
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDR 86
Score = 42 (19.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 171 NSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPN 210
N G Y++ G ++ GG+ N +GY G+ Y G N
Sbjct: 224 NQG-YNN-YYGQNYGGGYGNGYNQGYN--GYSGYDYSGYN 259
Score = 36 (17.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 168 GTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
G G G G F G++N + YG
Sbjct: 207 GGGRGGFRGRGGRGQGFNQGYNNYYGQNYG 236
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 136 (52.9 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
K+F+GGL+W+T + L+ YF +FG++ E +V+ T RS+G+GFVT+ D
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVD 72
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 146 (56.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGG+A ET+ + L+ YF ++G +LEAVV K TG+ +G+GFV F + ++A +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 75 PSPMIG 80
++G
Sbjct: 67 THFILG 72
Score = 119 (46.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
S +K+FVGGL+ T + ++YFE+FG + VV+ T R +G+GFVT+
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY 168
Score = 44 (20.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 24/89 (26%), Positives = 33/89 (37%)
Query: 111 PLFGSPGHHQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTV 170
P+FG HH N Q A +P+ Y +TA + P G + P + P
Sbjct: 239 PVFGY--HH-----NVQ-AVQYPYGYQFTAQVANVSWNNPIMQP-TGFYCAPPHPTPPPT 289
Query: 171 NSGMYSHGQLGHHFPGGHDNTVVRGYGML 199
N+ Y G G T + GY L
Sbjct: 290 NNLGYIQYMNGFDLSG----TNISGYNPL 314
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 139 (54.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++ S +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 75 PSPMIGGRKANCNLAHLGRTR 95
+ G+ + A +T+
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTK 81
Score = 128 (50.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 47/182 (25%), Positives = 76/182 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 143
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R G G P S N+ + +
Sbjct: 144 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFVGRARGRGGG--P-SQNWNQGYSN 199
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL---YGAPGTVNSGMYSHGQLGHHFPGGHD 189
YW Y +N QG Y Y G Y YG N +G++ GGH
Sbjct: 200 ---YWNQGYGNYGYNSQG-YGGYGGYDYTGYNNYYGYSDYSNQ-QSGYGKVSRR--GGHQ 252
Query: 190 NT 191
N+
Sbjct: 253 NS 254
Score = 45 (20.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 196 GYSNYWNQGYGNYGYNSQGYGG 217
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGY 196
G Y + G+ GG+D T Y
Sbjct: 206 GNYGYNSQGYGGYGGYDYTGYNNY 229
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 152 (58.6 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 135 (52.6 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KL VGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 135 (52.6 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KL VGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 141 (54.7 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC- 72
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ A
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMD-PNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 73 ANPSPMIG 80
A P M G
Sbjct: 82 ARPQKMDG 89
Score = 124 (48.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S
Sbjct: 113 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 166
Score = 47 (21.6 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 144 GFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGHHFPGGHDNTVVRGYG 197
G +N G YN ++ P+ G G +SG Y G+ G+ GG ++ G G
Sbjct: 266 GSYNDFGNYNNQ-SSNFGPMKGGNFGGRSSGPYGDGEGGY---GGSSSSSSYGSG 316
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 144 (55.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+ S + + G+ + A +T+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 137 (53.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 296
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 297 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 349
Query: 190 NT 191
N+
Sbjct: 350 NS 351
Score = 45 (20.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 293 GYSNYWNQGYGNYGYNSQGYGG 314
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 303 GNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRG 346
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 144 (55.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+ S + + G+ + A +T+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 137 (53.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 296
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 297 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 349
Query: 190 NT 191
N+
Sbjct: 350 NS 351
Score = 45 (20.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 293 GYSNYWNQGYGNYGYNSQGYGG 314
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 303 GNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRG 346
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 144 (55.7 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+ S + + G+ + A +T+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 137 (53.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 296
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 297 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 349
Query: 190 NT 191
N+
Sbjct: 350 NS 351
Score = 45 (20.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 293 GYSNYWNQGYGNYGYNSQGYGG 314
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 303 GNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRG 346
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 152 (58.6 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 147 (56.8 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET D+LR +F+++G + + VV+ T RS+G+GFVT+ CA
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 74 NPSPMIG 80
P + G
Sbjct: 73 RPHKVDG 79
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 103 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 162
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPR 105
I G NC + ++ ++ S G R
Sbjct: 163 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQR 191
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 141 (54.7 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 29/99 (29%), Positives = 54/99 (54%)
Query: 2 AGAYGAEADSANR-----KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKG 56
A + GA+ D++ K+F+GGL+W+T L+ YF +FG++++ + TGRS+G
Sbjct: 28 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 87
Query: 57 YGFVTFRDPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+GFV F++ S + + G+ + A +T+
Sbjct: 88 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 126
Score = 137 (53.3 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 188
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 189 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 244
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 245 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 297
Query: 190 NT 191
N+
Sbjct: 298 NS 299
Score = 45 (20.9 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 241 GYSNYWNQGYGNYGYNSQGYGG 262
Score = 40 (19.1 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 251 GNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRG 294
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 146 (56.5 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-C 72
RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFVT+ A C
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 73 ANPSPMIG 80
A P + G
Sbjct: 95 ARPHKVDG 102
Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPR 105
I G NC + ++ ++ S G R
Sbjct: 186 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQR 214
Score = 43 (20.2 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGP 209
YG G + G Y G G++ GG G G GGP
Sbjct: 248 YGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGP 293
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
G PG + G Y G G+ GG GYG G Y G N+ G
Sbjct: 278 GGPGYSSRGGYGGGGPGYGNQGG-------GYGGGGGG---YDGYNEGG 316
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 134 (52.2 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75
+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++ S +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 76 SPMIGGRKANCNLAHLGRTR 95
+ G+ + A +T+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTK 80
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 142 (55.0 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFVT+
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 81
Score = 118 (46.6 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 124 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 183
Query: 74 NPSPMIGGRKANCNL 88
I G NC +
Sbjct: 184 QKYHTINGH--NCEV 196
Score = 48 (22.0 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 22/84 (26%), Positives = 32/84 (38%)
Query: 143 PGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMY----SHGQLGHHFPGGHDNT-VVRGYG 197
PG+ NP G Y G + Y G G Y ++ G++ N ++G G
Sbjct: 294 PGYGNPGGGYGGGGGGY--DGYNEGGNFGGGNYGGSGNYNDFGNYSGQQQSNYGPMKGGG 351
Query: 198 MLGHHIV--PYGGPNDNGLTSAAF 219
G PYGG +G S +
Sbjct: 352 SFGGRSSGSPYGGGYGSGSGSGGY 375
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 41/107 (38%), Positives = 57/107 (53%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
+ A+ LFVG L+W + L FEQFG+ L A ++T ++TGRS+G+G+V F + A
Sbjct: 273 EGASANLFVGNLSWNVTEEWLHQEFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAA 331
Query: 70 RAC-ANPSPMIGGRKANCNLAHLGR-TRPDLPSFGHPRPSSAAPLFG 114
+A A I GRK N + A GR D F R + A FG
Sbjct: 332 KAYEAMKEHEIDGRKINLDYA-TGRPANKDQGGFKE-RAQNRARSFG 376
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 143 (55.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/49 (51%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET +++LR++FEQ+G + + VV+ NT S+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTY 62
Score = 114 (45.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
RK+FVGG+ +T LR YF+Q+G I ++T + +G+ +G+ VTF D
Sbjct: 102 RKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDD 152
Score = 41 (19.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAAF 219
G G G G G +F GG Y + P G N G +S+++
Sbjct: 230 GGYGGSGDGYNGFGNDGGNFGGGKIYNDFGNYNNQSSNFGPMKGGNFGGGSSSSY 284
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 8 EADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++
Sbjct: 88 EAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 147
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTR 95
S + + G+ + A +T+
Sbjct: 148 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
Score = 137 (53.3 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 296
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 297 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 349
Query: 190 NT 191
N+
Sbjct: 350 NS 351
Score = 45 (20.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 293 GYSNYWNQGYGNYGYNSQGYGG 314
Score = 40 (19.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVR---GYGMLGHHIVPYGGPNDNG 213
G Y + G+ GG+D T GYG + YG + G
Sbjct: 303 GNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRG 346
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 147 (56.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 80 ARPHSIDGR 88
Score = 135 (52.6 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 57/199 (28%), Positives = 81/199 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 111 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 170
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 171 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 230
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL-YGAPGTVNSGMYSH--GQL 180
Y S Y PG G YN + + P YG + N G + G
Sbjct: 231 DGYGSGRGFGDGYNGYGGGPGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPY 290
Query: 181 G--HHFPGGHDNTVVRGYG 197
G ++ PGG + GYG
Sbjct: 291 GGGNYGPGGSGGS--GGYG 307
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 157 GQHYLPLYGAPGTVNSGMYSHGQLGHHF--PGGHDNTVVRGYGMLGHHIVPYGGPN 210
G Y G PG N G ++ G++ P + +G + PYGG N
Sbjct: 240 GDGYNGYGGGPGG-NYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGN 294
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 2 AGAYGAE-ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
A A AE A +RK F+GGL+W+T + L ++F+++G+I++ ++ TGRS+G+GF+
Sbjct: 149 ANATSAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFL 208
Query: 61 TFRDPGS 67
TF D S
Sbjct: 209 TFEDAKS 215
Score = 138 (53.6 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 41/150 (27%), Positives = 62/150 (41%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FVGG+ + +F QFG I++ ++ K+TGRS+G+GFVT+ P + + C N
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 75 PSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHPH 134
+ G+ A P H + Q Q M+P
Sbjct: 307 KYLTLKGKAMEVKRA--------APRGQHNQQVMMQQQ--QQQQQQQAQQQAQQQAMYP- 355
Query: 135 PYWYTAYAPGFFNPQGLYNPYVGQHYLPLY 164
Y +Y NP G NP + Q Y+ Y
Sbjct: 356 ---YGSYGFQQMNP-GAMNPAMSQEYMRYY 381
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLF+GGL+++T ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A N
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMN 66
Query: 75 PSP-MIGGR 82
P + GR
Sbjct: 67 ARPHKVDGR 75
Score = 108 (43.1 bits), Expect = 0.00049, P = 0.00049
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVG +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 98 KKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 154
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 155 QKYHTVNGH--NCEV 167
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N P + GR
Sbjct: 73 NARPHKVDGR 82
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
A+ + ++FVG L W LR YF +FG ++ A VI K TG SKGYGFV+F
Sbjct: 8 AKVGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSF 63
>UNIPROTKB|E9PSF1 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
Uniprot:E9PSF1
Length = 77
Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 3 GA-YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTG 52
GA +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG
Sbjct: 22 GAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 58/205 (28%), Positives = 86/205 (41%)
Query: 1 MAGAYGAEADSANRK-LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGF 59
+ G++G EA N K +F+GGL + + +R YF QFG + ++ + TGR + +GF
Sbjct: 122 VVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGF 181
Query: 60 VTFRDPGSALRACANPSPMIGGRKANCNLAHLGR-TRPDLPSFGHPRPSSAAPLFGSPGH 118
+ F DP SA +A A I L + R T+ F P SS + P
Sbjct: 182 LEFVDPSSAEKALAPRKHWILQ-----TLVEVKRSTQKADRRFRFPIFSSVRAGYIPPQP 236
Query: 119 HQPVSYNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHY-LPLYG--APGTVNSGMY 175
SYNY + + +PY + P P N + HY +P+ PG +
Sbjct: 237 ATADSYNYNNP--NYNPYLAQSVLP----PSAFTNGWA--HYVIPMAPKPTPGQNMAASL 288
Query: 176 SHGQLGHHFPGGHDNTVVRGYGMLG 200
QL H GH + Y G
Sbjct: 289 PSQQLAEHSLNGHGPDMWSSYPKTG 313
Score = 142 (55.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
RK+F+GGL+ +T +TLR +F QFG + +AVV+ + S+G+GFVT+ DP S
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKS 85
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 140 (54.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71
++ K+FVGG+++ T+ LR F ++G++++A +I + TGRS+G+ FVTF A A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 72 CANPSPMIGGRKANCNLA 89
+ GR+ N A
Sbjct: 92 MQLDGQDLHGRRIRVNYA 109
Score = 44 (20.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 33/119 (27%), Positives = 44/119 (36%)
Query: 144 GFFNPQGLYNPYVGQHYLPL--YG--APGTVNSGMYSHGQLGHHFPGGHDNTV--VRGYG 197
GF P G Y G + P YG A G + YS G GG+ + GYG
Sbjct: 120 GFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYG 179
Query: 198 ----MLGHHIVPYGGPNDNGLTSAAFPMIQPPHTAGVSDNFRTGSDNNS---PAFSSNR 249
G+ + GG N + + G S+NF GS N+ F SN+
Sbjct: 180 GNPPYSGNAVGGGGGYGSNFGGGGGYGVAGG---VGGSENFAQGSSTNAGFDDKFESNQ 235
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 146 (56.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-C 72
RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFVT+ A C
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 73 ANPSPMIG 80
A P + G
Sbjct: 95 ARPHKVDG 102
Score = 121 (47.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPR 105
I G NC + ++ ++ S G R
Sbjct: 186 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQR 214
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNGLTSAA 218
YG G + G Y G G GG+ N G + P G + G +S +
Sbjct: 249 YGGGGGGSRGSYGGGNYGG---GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGS 300
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72
N K+FV L W + L+ +F ++G I + V+ K T RS+G+GFVTF S +A
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 73 ANPSPMIGGRK 83
+ M GGRK
Sbjct: 62 EAENEM-GGRK 71
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTR 95
+ S + + G+ + A +T+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EAD KLF+GGL ETN L F ++G I+E +++ + T +S+G+ FVTF P
Sbjct: 3 EADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 68 A 68
A
Sbjct: 62 A 62
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EAD KLF+GGL ETN L F ++G I+E +++ + T +S+G+ FVTF P
Sbjct: 5 EADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 68 A 68
A
Sbjct: 64 A 64
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EAD KLF+GGL ETN L F ++G I+E +++ + T +S+G+ FVTF P
Sbjct: 3 EADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 68 A 68
A
Sbjct: 62 A 62
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EAD KLF+GGL ETN L F ++G I+E +++ + T +S+G+ FVTF P
Sbjct: 5 EADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 68 A 68
A
Sbjct: 64 A 64
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 148 (57.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+G L++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSPM-IGGR 82
N P + GR
Sbjct: 73 NARPQKVNGR 82
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 52/197 (26%), Positives = 78/197 (39%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G ++T + G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEHH-LRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVI 163
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHP-RPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ G NC R + D+ S R S + FG G S Y S
Sbjct: 164 QKYHTVNGH--NCET----RVKQDMASASSSQRGRSGSGNFGYSGG----SRGYGSGGQG 213
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVN-SGMYSHGQLGHHFPGGHDNT 191
Y G+ G Y+ Y +G+ N G S+ G++ +
Sbjct: 214 -----YGNQGSGY-GGSGSYDSYNNGGGRGGFGSGSGSNFGGGGSYNDFGNYNNQSSNFG 267
Query: 192 VVRGYGMLGHHIVPYGG 208
++G G PYGG
Sbjct: 268 PMKGGNFGGRSSGPYGG 284
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 130 (50.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ L+VG L W+ S+ L+ +FG+++ A VI K+TGRS+GYGF+ RD
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD 53
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 130 (50.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+ L+VG L W+ S+ L+ +FG+++ A VI K+TGRS+GYGF+ RD
Sbjct: 3 KTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD 53
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 8 EADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
EA +A R K+F+GGL+W+T L+ YF +FGD+++ + TGRS+G+GFV F++
Sbjct: 86 EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKE 145
Query: 65 PGSALRACANPSPMIGGRKANCNLAHLGRTR 95
S + + G+ + A +T+
Sbjct: 146 SESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 176
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 141 (54.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 134 (52.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75
+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++ S +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 76 SPMIGGRKANCNLAHLGRTR 95
+ G+ + A +T+
Sbjct: 61 EHKLNGKVIDPKRAKAMKTK 80
Score = 128 (50.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 47/182 (25%), Positives = 76/182 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 142
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R G G P S N+ + +
Sbjct: 143 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFVGRARGRGGG--P-SQNWNQGYSN 198
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPL---YGAPGTVNSGMYSHGQLGHHFPGGHD 189
YW Y +N QG Y Y G Y YG N +G++ GGH
Sbjct: 199 ---YWNQGYGNYGYNSQG-YGGYGGYDYTGYNNYYGYSDYSNQ-QSGYGKVSRR--GGHQ 251
Query: 190 NT 191
N+
Sbjct: 252 NS 253
Score = 45 (20.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 187 GHDNTVVRGYGMLGHHIVPYGG 208
G+ N +GYG G++ YGG
Sbjct: 195 GYSNYWNQGYGNYGYNSQGYGG 216
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 173 GMYSHGQLGHHFPGGHDNTVVRGY 196
G Y + G+ GG+D T Y
Sbjct: 205 GNYGYNSQGYGGYGGYDYTGYNNY 228
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 148 (57.2 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + L+ YF +FG++ E++V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P L
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQPKL 104
Score = 136 (52.9 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ T + ++ YF+QFG + +A+++ K T R +G+GFVTF + + C
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 74 NPSPMIGGRKANCNLA 89
I + C A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 129 (50.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 41/123 (33%), Positives = 56/123 (45%)
Query: 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP---GSALRAC 72
LF+GGL + TN L +F FG I E VV+ + T RS+G+ F+TF +P A+R
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 73 ANPSPMIGGRKANCNLA-HLGRTRPDLPSFGHPRPSSAAPLFGSPGH------HQPVSYN 125
S + GR+ + A L R H R S + G G+ QP Y
Sbjct: 68 NGKS--LDGRQIRVDHAGKLARGTRGCAFRAHGRGRSYSRGGGDQGYGSGRYDSQPGGYG 125
Query: 126 YQS 128
Y S
Sbjct: 126 YGS 128
>UNIPROTKB|F1M0Z9 [details] [associations]
symbol:F1M0Z9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 IPI:IPI00393308
Ensembl:ENSRNOT00000034921 Uniprot:F1M0Z9
Length = 71
Score = 129 (50.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 28 DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87
D+LR YF +FG+I E +V+ T RS+G+GFVTF DP S + P + + +
Sbjct: 1 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPK 60
Query: 88 LAHLGRTRP 96
+A R +P
Sbjct: 61 VAFPRRAQP 69
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 147 (56.8 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 69 ARPHSIDGR 77
Score = 139 (54.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 159
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 160 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 219
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 220 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 269
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 270 GYGGGYDNYGGGNYG 284
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 149 (57.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 57/169 (33%), Positives = 73/169 (43%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
E D N L++G L D L F FG+I+ A VI + TG SKGYGFV + D
Sbjct: 476 EYDETN--LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 68 ALRAC-ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPV---- 122
A A A GR +A G++ P + G P P P G P +QP
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIA--GKSPPPIAPPGPPAPQP--PTQGYPPSNQPPGAYP 589
Query: 123 SYNYQSAFMHPHPY-W---YTAYAPGFFNPQ--GLYNPYVGQHYLPLYG 165
S Y + P W +Y+P P G Y+P GQH +P YG
Sbjct: 590 SQQYATGGYSTAPVPWGPPVPSYSPYALPPPPPGSYHPVHGQH-MPPYG 637
Score = 43 (20.2 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 200 GHHIVPYG---GPNDNGLTSAAFP-MIQPPHTAGVSDNFRTGSDNNSPAFSSN 248
G H+ PYG P +T A P Q P ++ +F G +S A +S+
Sbjct: 630 GQHMPPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPPGVQADSGAATSS 682
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 144 (55.7 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF GGL +ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 69
Score = 121 (47.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 33/114 (28%), Positives = 53/114 (46%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR Y EQ+G I ++T + +G+ G+ FVTF D S +
Sbjct: 108 KKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVI 167
Query: 74 NPSPMIGGRKANCNLAH-LGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNY 126
+ G NC + L + SF R S + + G++ S N+
Sbjct: 168 QKYHTVNGH--NCEVRKALSKQEMASASFSQ-RGRSGSRNYNDFGNYNNQSSNF 218
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 77 ARPHTIDGR 85
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 57/195 (29%), Positives = 84/195 (43%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 108 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 167
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMHP 133
I G A A +R ++ + R S FG G + N+ P
Sbjct: 168 QKYHTINGHNAEVRKA---LSRQEMQEVQNSR-SGRGGNFGF-GDARGGGGNFG-----P 217
Query: 134 HPYW-YTAYAPGFFNPQGL---YNPYVGQ----HY--LPLYGAP-GTVNSGMYSHGQLGH 182
P + A G+ + +G YN Y G ++ P YG G G +G G
Sbjct: 218 GPGSNFRGGADGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGG 277
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 278 GYGGGYDNYGGGNYG 292
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 80 ARPHSIDGR 88
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 111 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 170
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 171 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 230
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 231 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 280
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 281 GYGGGYDNYGGGNYG 295
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 56/195 (28%), Positives = 79/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G + +IT + +G+ +G+GF TF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSHGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y Y S Y Y G G N + G +P YG G G +G G
Sbjct: 232 YGYGSG--RGFGDGYNGYGGGL----GGGN-FGG---IPGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKHHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 232 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 139 (54.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 232 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 139 (54.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 232 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 139 (54.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 232 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 147 (56.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR Y+EQ+G + + VV+ + RS+G+GFVTF A A
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 138 (53.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 57/195 (29%), Positives = 78/195 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+KLFVGG+ +T LR YFE++G I +IT + +G+ +G+GFVTF D +
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFL 171
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPS--------FGHPRPSSAAPLFG-SPGHH-QPVS 123
I G A A + ++ S FG FG PG + + S
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGS 231
Query: 124 YNYQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAP-GTVNSGMYSHGQLGH 182
Y S Y Y G P G + G P YG G G +G G
Sbjct: 232 DGYGSG--RGFGDGYNGYGGG---PGG--GNFGGS---PGYGGGRGGYGGGGPGYGNQGG 281
Query: 183 HFPGGHDNTVVRGYG 197
+ GG+DN YG
Sbjct: 282 GYGGGYDNYGGGNYG 296
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 141 (54.7 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET D+LR +FEQ+G + + VV+ RS+G+GFVT+ S + A
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSV-SEVDAAM 71
Query: 74 NPSP-MIGGR 82
P + GR
Sbjct: 72 TARPHKVDGR 81
Score = 109 (43.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T +R YFE +G I ++ ++TG+ +G+ FVTF D + + A
Sbjct: 104 KKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVA 163
Query: 74 NPSPMIGGRKANCNL 88
I NC +
Sbjct: 164 QKYHTINSH--NCEV 176
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 150 GLYNP---YVGQ--HYLPLYGAP-GTVNSGMYSHGQLGHHFPGG 187
G YN Y GQ ++ P+ G G NSG Y G G GG
Sbjct: 260 GNYNDFGNYGGQQSNFGPMKGNNFGGRNSGPYGGGGYGSGGGGG 303
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 139 (54.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL ET ++LR Y++Q+G + + VVI ++ RS+G+GFV F A A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 112 (44.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+KLFVGG+ +T LR YFE++G I +A+ I + +GR +GFVTF D
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTI-DAIEII-RQSGRKTAFGFVTFDD 160
Score = 44 (20.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHF--PGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG G + G ++ G++ P + +G H + PYGG D G
Sbjct: 288 YGNYGGGDYGEGNYNAFGNYNQDPSNYGPVKNGNFGESRHMVAPYGG-GDYG 338
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 139 (54.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL ET ++LR Y++Q+G + + VVI ++ RS+G+GFV F A A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 74 NPSPMIGGR 82
I GR
Sbjct: 81 ARPHSIDGR 89
Score = 112 (44.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+KLFVGG+ +T LR YFE++G I +A+ I + +GR +GFVTF D
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTI-DAIEII-RQSGRKTAFGFVTFDD 160
Score = 44 (20.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 164 YGAPGTVNSGMYSHGQLGHHF--PGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG G + G ++ G++ P + +G H + PYGG D G
Sbjct: 288 YGNYGGGDYGEGNYNAFGNYNQDPSNYGPVKNGNFGESRHMVAPYGG-GDYG 338
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 134 (52.2 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
G DSA K+FVGGLA ET S +F ++G+I ++V++ + TG+ +G+GFVT+ D
Sbjct: 35 GGGVDSAG-KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 54/210 (25%), Positives = 86/210 (40%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
D +K+FVGG+ + D + +F QFG++ E ++ +TGRS+G+GFVT+
Sbjct: 126 DFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVD 185
Query: 70 RACANPSPM-IGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQS 128
A + + + G + A +P+ + R + FG G+ +
Sbjct: 186 HLLAKGNRIELSGTQVEIKKAE--PKKPNSVTTPSKRFGDSRSNFGG-GYGDGYGGGHGG 242
Query: 129 AFMHPH-PY-----WYTAYAPGFFNPQGLYNPYVGQHYL----PLYGAPGTVNSGMYSHG 178
+ P PY + + G+ G + Y G Y P G P SG Y G
Sbjct: 243 GYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGG 302
Query: 179 QLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
G++ GG+ GYG G YGG
Sbjct: 303 GGGYN-RGGYSMGGGGGYG--GGPGDMYGG 329
Score = 53 (23.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 165 GAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGG 208
G PG + G Y G+ G + GG + GYG G I YGG
Sbjct: 321 GGPGDMYGGSY--GEPGGGY-GGPSGSYGGGYGSSG--IGGYGG 359
Score = 52 (23.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 24/75 (32%), Positives = 29/75 (38%)
Query: 141 YAPGFFNPQGLYNPYVGQHYLPLYGAPGT--VNSGMYSHGQLGHHFPGGHDNTVVRGYGM 198
Y + P G Y G Y YG+ G GM G G+ GG+D V G G
Sbjct: 327 YGGSYGEPGGGYGGPSGS-YGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGA 385
Query: 199 LGHHIVPYGGPNDNG 213
G+ GG N G
Sbjct: 386 GGYGAG--GGGNGGG 398
Score = 48 (22.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 167 PGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGP 209
P +V + G +F GG+ + GYG G H YGGP
Sbjct: 211 PNSVTTPSKRFGDSRSNFGGGYGD----GYG--GGHGGGYGGP 247
Score = 44 (20.5 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 17/50 (34%), Positives = 18/50 (36%)
Query: 164 YGAPGTVNSGMYSHGQLGHHFPGGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
YG PG G Y G GG+ GYG G YGG G
Sbjct: 244 YGGPG----GPYKSG-------GGYGGGRSGGYGGYGGEFGGYGGGGYGG 282
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 128 (50.1 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+FV L W + L+ +F QFG+I + V+ + T RSKG+GFV F S A N
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAI-N 63
Query: 75 PSPMIGGRKANCNLA 89
I GRK N A
Sbjct: 64 SDNEINGRKLVVNEA 78
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-C 72
RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFVT+ A C
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 73 ANPSPMIG 80
A P + G
Sbjct: 73 ARPHKVDG 80
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 58/221 (26%), Positives = 84/221 (38%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAP--------LFGSPGHHQPVSYN 125
I G NC + ++ ++ S G R FG G + N
Sbjct: 164 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGN 220
Query: 126 YQSAFMHPHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGHHFP 185
Y + Y PG+ N G Y G Y Y G G Y G + F
Sbjct: 221 YGGGPGYSSRGGYGGGGPGYGNQGGGYGG--GGGY-DGYNEGGNFGGGNYGGGGNYNDF- 276
Query: 186 GGHDNTVVRGYG-MLGHHI------VPYGGPNDNGLTSAAF 219
G + YG M G PYGG +G S +
Sbjct: 277 GNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGY 317
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 135 (52.6 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC-A 73
KL VGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 147 (56.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 3 GAYGAEADSAN--RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
GA G + RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFV
Sbjct: 22 GAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFV 81
Query: 61 TFRDPGSALRA-CANPSPMIG 80
T+ A CA P + G
Sbjct: 82 TYSCVEEVDAAMCARPHKVDG 102
Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 57/208 (27%), Positives = 85/208 (40%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRP--SSAAPLFGSPGHHQPVSYNYQSAFM 131
I G NC + ++ ++ S G R + G G+ N+
Sbjct: 186 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGN 242
Query: 132 HPHPYWYTAYAPG----FFNPQGLYNPYVGQ--HYLPLYGAPGTVNSGMYSHGQLGHHFP 185
Y G + G YN + G +Y G PG + G Y G G P
Sbjct: 243 FGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNY---GGGPGYSSRGGYGGG--G---P 294
Query: 186 GGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
GG+ N GYG G Y G N+ G
Sbjct: 295 GGYGNQG-GGYGGGGGG---YDGYNEGG 318
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 139 (54.0 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F++ S +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 75 PSPMIGGRKANCNLAHLGRTR 95
+ G+ + A +T+
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTK 82
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 142 (55.0 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ F+GGLAW T+ LR FE++G ++EA V+ K +GRS+G+GF+TF + + A A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 75 PSPM-IGGRKANCNLA--HLG 92
+ M + GR + A H G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQG 88
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 127 (49.8 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 115
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 116 QKYHTVNGH--NCEV 128
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 146 (56.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-C 72
RKLF+GGL++ET D+LR +FE++G + + VV+ T RS+G+GFVT+ A C
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 73 ANPSPMIG 80
A P + G
Sbjct: 73 ARPHKVDG 80
Score = 122 (48.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 54/208 (25%), Positives = 83/208 (39%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFE++G I V+ + +G+ +G+ FVTF D + +
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 74 NPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRP--SSAAPLFGSPGHHQPVSYNYQSAFM 131
I G NC + ++ ++ S G R + G G+ N+
Sbjct: 164 QKYHTINGH--NCEVKK-ALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFXRGGN 220
Query: 132 HPHPYWYTAYAPG----FFNPQGLYNPYVGQ--HYLPLYGAPGTVNSGMYSHGQLGHHFP 185
Y G + G YN + G +Y G G+ + G Y G G+
Sbjct: 221 FGGKGXYGGGGGGXRSSYGGGDGGYNGFGGDGGNY---GGGSGSSSRGGYGGGGPGYGNQ 277
Query: 186 GGHDNTVVRGYGMLGHHIVPYGGPNDNG 213
GG GYG G Y G N+ G
Sbjct: 278 GG-------GYGGGGGG---YDGYNEGG 295
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 145 (56.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
++ K+F+GGL+W+T+ L Y +FG++++ + T TGRS+G+GFV F+D S
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Score = 124 (48.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 46/184 (25%), Positives = 77/184 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ +T+ + ++ YF FG+I + T +G+ F+T+ D +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 74 NPSPMIGGRKANCNLAHLGRT-RPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ IG K +A R R ++A G+ G + N+ F +
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 255
Query: 133 PHPYWY----TAYAPGFFNPQGLYNPYVGQHYLPL-YGAPGTVNSGMYS-HGQLGHHFPG 186
+ Y +AY ++ G Y+ Y G +Y YG T SG S +G+ G
Sbjct: 256 YYDQGYGNYNSAYGDESYSGYGGYD-YTGYNYGSYGYGQGYTDYSGQQSTYGKASRG-GG 313
Query: 187 GHDN 190
H N
Sbjct: 314 NHQN 317
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 145 (56.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
++ K+F+GGL+W+T+ L Y +FG++++ + T TGRS+G+GFV F+D S
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104
Score = 124 (48.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 46/184 (25%), Positives = 77/184 (41%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ +T+ + ++ YF FG+I + T +G+ F+T+ D +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 74 NPSPMIGGRKANCNLAHLGRT-RPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+ IG K +A R R ++A G+ G + N+ F +
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 255
Query: 133 PHPYWY----TAYAPGFFNPQGLYNPYVGQHYLPL-YGAPGTVNSGMYS-HGQLGHHFPG 186
+ Y +AY ++ G Y+ Y G +Y YG T SG S +G+ G
Sbjct: 256 YYDQGYGNYNSAYGDESYSGYGGYD-YTGYNYGSYGYGQGYTDYSGQQSTYGKASRG-GG 313
Query: 187 GHDN 190
H N
Sbjct: 314 NHQN 317
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 136 (52.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
EA+ RKLF+GGL+++T ++LR Y++Q+G++ + VV+ + RS+G GFVTF
Sbjct: 4 EAEQI-RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 62
Query: 68 ALRACANPSPMIGGR 82
A A I GR
Sbjct: 63 VDAAMAARPHSIDGR 77
Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD 64
+KLFVGG+ +T LR YFE++G I +IT + +GR +G+GFVTF D
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDD 150
Score = 45 (20.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 167 PGTVNSGMYSHGQLGHHFPGGHDNTV-----VRG--YGMLGHHIVPYGGPN 210
PG N +S G G++F G +D +R +G+ + PYGG N
Sbjct: 262 PGYGNQWEFSGGGYGNNF-GNYDQQPSNYGPMRNGNFGVGRNKAAPYGGGN 311
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 137 (53.3 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 50/182 (27%), Positives = 78/182 (42%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL+ +T + +R YF FG++ E++ + N T + +G+ F+TF++ +
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 86
Query: 73 ANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQSAFMH 132
+G K +A +G R A G G P S N+ + +
Sbjct: 87 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGS-RGGFAGRARGRGGG--P-SQNWNQGYSN 142
Query: 133 PHPYWYTAYAPGFFNPQGLYNPYVGQHYLPLYGAPGTVNSGMYSHGQLGH---HFPGGHD 189
YW Y +N QG Y Y G Y G G YS+ Q G+ GGH
Sbjct: 143 ---YWNQGYGNYGYNSQG-YGGYGGYDYT---GYNNYYGYGDYSNQQSGYGKVSRRGGHQ 195
Query: 190 NT 191
N+
Sbjct: 196 NS 197
WARNING: HSPs involving 400 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 249 249 0.00080 114 3 11 22 0.47 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 650
No. of states in DFA: 591 (63 KB)
Total size of DFA: 209 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.78u 0.10s 23.88t Elapsed: 00:00:01
Total cpu time: 23.82u 0.10s 23.92t Elapsed: 00:00:01
Start: Fri May 10 15:21:32 2013 End: Fri May 10 15:21:33 2013
WARNINGS ISSUED: 2