BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043732
(249 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 4 TQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 67 SALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQP 121
+A RAC +P+P+I GRKAN NLA+LG + R P F P+ FG P H
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH--- 120
Query: 122 VSYNYQSAFMHP 133
Y Y AF+ P
Sbjct: 121 --YVYPQAFVQP 130
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLP--SFGHPR--PSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P +FG P+ P+ +G P H
Sbjct: 65 ADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIHPAFIQRPYGIPTH---- 120
Query: 123 SYNYQSAFMHP 133
Y Y AFM P
Sbjct: 121 -YVYPQAFMQP 130
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH---- 120
Query: 123 SYNYQSAFMHP 133
Y Y AF+ P
Sbjct: 121 -YVYPQAFVQP 130
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIPAH---- 120
Query: 123 SYNYQSAFMHP 133
Y Y AF+ P
Sbjct: 121 -YVYPHAFVQP 130
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIPAH---- 120
Query: 123 SYNYQSAFMHP 133
Y Y A++ P
Sbjct: 121 -YVYPQAYVQP 130
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FG+I EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P F P+ FG P H
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAH---- 120
Query: 123 SYNYQSAFMHP 133
Y Y AF+ P
Sbjct: 121 -YVYPQAFVQP 130
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D +
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 68 ALRACANPSPMIGGRKANCNLAHLG-RTRPDLPSFG----HPRPSSAAPLFGSPGHHQPV 122
A RAC +P+P+I GRKAN NLA+LG + R P F P+ +G P H+
Sbjct: 65 AERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYP 124
Query: 123 SYNYQSAFMHPH 134
Q + PH
Sbjct: 125 QAYVQQGLVIPH 136
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 65/87 (74%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65
G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 26 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85
Query: 66 GSALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 86 AAAERACKDPNPIIDGRKANVNLAYLG 112
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 4 VQKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 67 SALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLG 89
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT D
Sbjct: 4 VQKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRA 63
Query: 67 SALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLG 89
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 62/86 (72%)
Query: 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPG 66
+ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + T +S+GYGFVT D
Sbjct: 4 VQKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRA 63
Query: 67 SALRACANPSPMIGGRKANCNLAHLG 92
+A RAC +P+P+I GRKAN NLA+LG
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLG 89
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%)
Query: 2 AGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVT 61
+ +G++ D+ K+FVGGL + T +LR YFE FGDI EAVVIT + TG+S+GYGFVT
Sbjct: 20 SAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 79
Query: 62 FRDPGSALRACANPSPMIGGRKANCNLAHLG 92
D +A RAC +P+P+I GRKAN NLA+LG
Sbjct: 80 MADRAAADRACKDPNPIIDGRKANVNLAYLG 110
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 3 GAYGAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
G G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFV
Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
TF DP S + P + + + +A R +P +
Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 167 VCEIHFHEINNKMVECKKAQ 186
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 3 GAYGAEADSANR--KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60
G G+ DS + K+F+GGL+W+T+ D+LR YF +FG+I E +V+ T RS+G+GFV
Sbjct: 8 GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
Query: 61 TFRDPGSALRACANPSPMIGGRKANCNLAHLGRTRPDL 98
TF DP S + P + + + +A R +P +
Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 167 VCEIHFHEINNKMVECKKAQ 186
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL WET D+LR YFEQFG++L+ V+ TGRS+G+GF+TF++P C N
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP-----KCVN 218
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGS 67
E K+FVGG+ + + R +F QFG +L+A ++ K+TGR +G+GFVT+ + +
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 68 ALRACANPSPMIGGRKANCNLA 89
+ P I G+ A
Sbjct: 301 VEATMSQPYITIHGKPVEVKRA 322
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T+ ++LR YF ++GDI EA+V+ T RS+G+GFVTF DP S +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + G+K + +A R P +
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKM 113
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + +++YFEQFG I +A+++ K T R +G+GFVTF+ +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 175 VCEIHFHEINNKMVECKKAQ 194
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+WET + L YF +FGDI++ VV+ + +GRS+G+GFVTF DP + N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 75 PSPMIGGRKAN---CNLAHLGRTR 95
+ GR + CN L + +
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPK 91
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL LRT+F ++G + E V++ + +S+G+GF++F + S
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 75 PSPMIGGRKANCNLAH 90
+ G++ A
Sbjct: 157 RYINLNGKQVEIKKAE 172
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN---CNLAHLG--RTRPDLPSFGHPRPSSA 109
+ GR + C + RTRP PR S+
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS 110
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D S +
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 71 ACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSS-AAPLFGSPGHHQPVSYNYQSA 129
A I G+K A PR S AP G PG Q S SA
Sbjct: 170 AVNMHFHDIMGKKVEVKRA-------------EPRDSKNQAP--GQPGASQWGSRVAPSA 214
Query: 130 FM----HPHPYWYTAYAPGFFNPQGLYNP 154
P P W Y PQG++ P
Sbjct: 215 ANGWAGQPPPTWQQGYG-----PQGMWVP 238
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN---CNLAHL--GRTRP 96
+ GR + C + RTRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
+S + K+FVGG+ LR YF++FG + E V+I R +G+GF+TF D S
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 70 RACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPS-SAAPLFGSPGHHQ---PVSYN 125
+A I G+K A PR S S AP G PG Q V N
Sbjct: 169 QAVNMHFHDIMGKKVEVKRA-------------EPRDSKSQAP--GQPGASQWGSRVVPN 213
Query: 126 YQSAFM-HPHPYWYTAYAPGFFNPQGLYNP 154
+ + P P W Y PQG++ P
Sbjct: 214 AANGWAGQPPPTWQQGYG-----PQGMWVP 238
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSAL 69
DS KLFVGG++WET+ D LR +F +G++ +A+V+ K TGR +G+GFV F DP S L
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP-SVL 60
Query: 70 RACANPSPMIGGRKANCNLA 89
I R+ + A
Sbjct: 61 DRVLQEKHSIDTREVDVKRA 80
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
G +A + +K+FVGGL + R YFE +G + + ++ + T R +G+GFV+F
Sbjct: 102 GGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL W T +TLR+YF Q+G++++ V++ K T +S+G+GFV F+DP A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 75 PSPMIGGRKAN 85
+ GR +
Sbjct: 71 RPHTLDGRNID 81
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 22/149 (14%)
Query: 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSA 68
+S + K+FVGG+ L+ YF +FG + E V+I R +G+GF+TF D S
Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168
Query: 69 LRACANPSPMIGGRKANCNLAHLGRTRPDLPSFGHPRPSSAAPLFGSPGHHQPVSYNYQS 128
+A I G+K A ++ P G PG +Q S QS
Sbjct: 169 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQTP--------------GPPGSNQWGSRAMQS 214
Query: 129 A---FMHPHPYWYTAYAPGFFNPQGLYNP 154
+ P + Y+ PQG++ P
Sbjct: 215 TANGWTGQPPQTWQGYS-----PQGMWMP 238
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW TN++TL F FG ++++ VIT + TGRS+G+GFVTF S L A N
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 75 PS-PMIGGRKANCNLAH 90
+ + GR N A
Sbjct: 69 MNGKELDGRNITVNQAQ 85
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW TN ++L F QFGDI ++ +I + TGRS+G+GFVTF+D S A
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 75 PS-PMIGGRKANCNLAH 90
+ + GR N A
Sbjct: 67 MNGQELDGRNITVNEAQ 83
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW T++++L F +G+IL++ VIT + TGRS+G+GFVTF S L A N
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 75 PS-PMIGGRKANCNLAH 90
+ + GR N A
Sbjct: 69 MNGKELDGRNITVNQAQ 85
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
KLF+GGL+W T+ +LR F FGD+++A VI + TGRS+G+GFV F D G+A A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 53 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 112
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 113 GFILFKDAASVEKVLDQKEHRLDGR 137
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 14 RKLFVGGLAWET-NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72
+K+FVGGL E+ + +R YF +FG+I + + +G+ F+TF++ +
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 73 ANPSPMIGGRKANCNLAH 90
+ G K +A
Sbjct: 213 EKKFHTVSGSKCEIKVAQ 230
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 6 GAEADSANR--------KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY 57
GAE D N K+FVGGL+W+T+ L+ YF +FG++++ + NTGRS+G+
Sbjct: 59 GAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF 118
Query: 58 GFVTFRDPGSALRACANPSPMIGGR 82
GF+ F+D S + + GR
Sbjct: 119 GFILFKDSSSVEKVLDQKEHRLDGR 143
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL E + +R YF QFG+I + + +G+ F+TF++ +
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 74 NPSPMIGGRKANCNLAH 90
+ G K +A
Sbjct: 219 KKFHTVSGSKCEIKVAQ 235
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW TN + L+ F QFGD++++ +I + +GRS+G+GFVTF+D + A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 75 PS-PMIGGRKANCNLAH 90
+ + GR N A
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 166 VCEIHFHEINNKMVECKKAQ 185
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 166 VCEIHFHEINNKMVECKKAQ 185
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
K+F+GGL+W+T + LR YF QFG++ E +V+ T RS+G+GFVTF D + A
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 75 PSPMIGGRKANCNLAHLGRTRPDL 98
+ + + +A R +P +
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKM 104
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALR 70
+ +K+FVGGL+ T + ++ YFEQFG + +A+++ K T R +G+GFVTF +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 71 ACANPSPMIGGRKANCNLAH 90
C I + C A
Sbjct: 166 VCEIHFHEINNKMVECKKAQ 185
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
KLFVGGL+W T+ +L+ F FG++ EA VI + TGRS+G+GFV+F SA A
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 75 PS-PMIGGRKANCNLA 89
+ GR+ NLA
Sbjct: 96 MDGKELNGRQIRVNLA 111
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW T+ +L T F QFG+++++ +I + TGRS+G+GFVTF+D S A
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 75 PSPM-IGGRKANCNLAH 90
+ + GR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW T+ L T F Q+G++L++ +I + TGRS+G+GFVTF+D S A
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 75 PSPM-IGGRKANCNLAH 90
+ + GR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW T+ L T F Q+GD++++ +I + TGRS+G+GFVTF+D + A
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 75 PSPM-IGGRKANCNLAH 90
+ + GR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-CA 73
KLF+GGL ++TN ++L F ++G I E VV+ + T RS+G+GFVTF +P A A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74
+ FVGGLAW T L F QFG+++++ +I + TGRS+G+GFVTF+D S A
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 75 PS-PMIGGRKANCNLAH 90
+ + GR N A
Sbjct: 67 MNGKELDGRTITVNEAQ 83
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
EA +A R K+F+GGL+W+T L+ YF +FGD+++ + TGRS+G+GFV F+
Sbjct: 85 TEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 144
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTRP 96
+ S + + G+ + A +T+
Sbjct: 145 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE 177
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ +T + +R YF FG++ + T + +G+ F+TF++ +
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 74 NPSPMIGGRKANCNLA 89
+G K +A
Sbjct: 240 KKYHNVGLSKCEIKVA 255
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-CA 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-CA 73
KLFVGGL+++TN +L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+ + A
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAM 72
Query: 74 NPSP-MIGGR 82
N +P + GR
Sbjct: 73 NTTPHKVDGR 82
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVKGH--NCEV 177
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-CA 73
KLF+GGL +ETN D L F ++G I E VV+ + T RS+G+GFVTF + A A A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 7 AEADSANR---KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63
+EA +A R K+F+GGL+W+T L+ YF +FG++++ + TGRS+G+GFV F+
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 DPGSALRACANPSPMIGGRKANCNLAHLGRTRP 96
+ S + + G+ + A +T+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGGL+ +T + +R YF FG++ + T + +G+ F+TF++ +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 74 NPSPMIGGRKANCNLA 89
+G K +A
Sbjct: 242 KKYHNVGLSKCEIKVA 257
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA-CA 73
KLFVGGL +ET ++L F ++G + E VV+ + + RS+G+GFVTF +P A A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 74 NPSPMIGGRKANCNLA 89
+ GR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGG-----RKANCN 87
+ G RKA C
Sbjct: 165 QKYHTVNGHNCEVRKALCK 183
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTF 62
RKLF+GGL++ET ++LR++FEQ+G + + VV+ NT RS+G+GFVT+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73
+K+FVGG+ +T LR YFEQ+G I ++T + +G+ +G+ FVTF D S +
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 74 NPSPMIGGRKANCNL 88
+ G NC +
Sbjct: 165 QKYHTVNGH--NCEV 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,832,982
Number of Sequences: 539616
Number of extensions: 5828588
Number of successful extensions: 12811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 215
Number of HSP's that attempted gapping in prelim test: 11626
Number of HSP's gapped (non-prelim): 1291
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)