Query 043732
Match_columns 249
No_of_seqs 353 out of 1740
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 6.4E-23 1.4E-27 172.6 15.4 92 5-96 4-96 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 4.2E-20 9.1E-25 148.7 15.3 84 10-93 31-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 1.2E-17 2.5E-22 152.3 11.7 85 8-92 102-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-17 4E-22 150.5 12.9 83 11-93 267-350 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7E-17 1.5E-21 146.8 11.5 82 12-93 2-84 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 3.4E-16 7.3E-21 142.7 15.3 85 9-93 189-276 (346)
7 TIGR01628 PABP-1234 polyadenyl 99.7 1.7E-15 3.6E-20 146.3 15.8 85 10-95 282-367 (562)
8 PF00076 RRM_1: RNA recognitio 99.7 6.8E-16 1.5E-20 107.5 8.9 69 16-85 1-70 (70)
9 KOG0122 Translation initiation 99.6 6.9E-16 1.5E-20 130.8 10.1 83 9-91 185-268 (270)
10 KOG0148 Apoptosis-promoting RN 99.6 5.1E-15 1.1E-19 127.2 14.1 81 8-94 159-240 (321)
11 KOG0125 Ataxin 2-binding prote 99.6 1.4E-15 3E-20 133.7 8.7 83 8-92 91-174 (376)
12 PLN03120 nucleic acid binding 99.6 3.2E-15 7E-20 129.5 10.9 76 12-90 3-78 (260)
13 PF14259 RRM_6: RNA recognitio 99.6 2.6E-15 5.6E-20 105.4 8.1 69 16-85 1-70 (70)
14 TIGR01645 half-pint poly-U bin 99.6 4.1E-15 9E-20 143.2 11.2 82 11-92 202-284 (612)
15 KOG0117 Heterogeneous nuclear 99.6 2.2E-14 4.8E-19 130.4 14.9 82 9-98 255-337 (506)
16 KOG0121 Nuclear cap-binding pr 99.6 2E-15 4.4E-20 116.6 6.5 81 9-89 32-113 (153)
17 TIGR01645 half-pint poly-U bin 99.6 4.7E-15 1E-19 142.8 10.2 80 11-90 105-185 (612)
18 TIGR01628 PABP-1234 polyadenyl 99.6 8.5E-15 1.8E-19 141.4 11.0 76 15-90 2-78 (562)
19 KOG0113 U1 small nuclear ribon 99.6 7.9E-15 1.7E-19 127.5 9.6 82 9-90 97-179 (335)
20 KOG0148 Apoptosis-promoting RN 99.6 5.3E-15 1.1E-19 127.2 8.3 81 13-93 62-143 (321)
21 KOG4207 Predicted splicing fac 99.6 4.8E-15 1E-19 123.0 7.8 87 7-93 7-94 (256)
22 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.7E-19 135.7 11.5 84 9-92 85-168 (457)
23 KOG0144 RNA-binding protein CU 99.6 6.8E-15 1.5E-19 133.3 7.1 89 7-95 28-120 (510)
24 TIGR01648 hnRNP-R-Q heterogene 99.5 2.8E-14 6E-19 137.1 10.4 78 11-89 56-135 (578)
25 TIGR01648 hnRNP-R-Q heterogene 99.5 2.4E-13 5.2E-18 130.7 16.7 75 11-93 231-308 (578)
26 KOG0111 Cyclophilin-type pepti 99.5 6.8E-15 1.5E-19 123.2 5.2 87 9-95 6-93 (298)
27 PLN03121 nucleic acid binding 99.5 6.5E-14 1.4E-18 119.8 10.9 77 11-90 3-79 (243)
28 KOG0107 Alternative splicing f 99.5 2.5E-14 5.4E-19 116.0 7.8 75 11-90 8-83 (195)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.5 9.5E-14 2.1E-18 132.3 12.8 82 11-92 293-375 (509)
30 KOG0126 Predicted RNA-binding 99.5 2.6E-15 5.7E-20 122.3 1.8 82 11-92 33-115 (219)
31 TIGR01622 SF-CC1 splicing fact 99.5 7.2E-14 1.6E-18 131.5 11.3 79 12-90 185-264 (457)
32 smart00362 RRM_2 RNA recogniti 99.5 1.1E-13 2.4E-18 95.2 9.1 71 15-87 1-72 (72)
33 KOG0117 Heterogeneous nuclear 99.5 5.2E-14 1.1E-18 128.1 8.7 79 11-89 81-161 (506)
34 KOG0144 RNA-binding protein CU 99.5 1.4E-14 3.1E-19 131.2 4.7 86 12-98 123-212 (510)
35 smart00360 RRM RNA recognition 99.5 1.7E-13 3.6E-18 93.9 8.6 70 18-87 1-71 (71)
36 COG0724 RNA-binding proteins ( 99.5 1.5E-13 3.3E-18 117.3 10.0 78 13-90 115-193 (306)
37 PLN03213 repressor of silencin 99.5 1.3E-13 2.7E-18 127.0 9.6 79 8-90 5-86 (759)
38 KOG0108 mRNA cleavage and poly 99.5 7.9E-14 1.7E-18 129.6 7.6 81 14-94 19-100 (435)
39 KOG0145 RNA-binding protein EL 99.5 2.2E-13 4.8E-18 116.7 9.3 86 6-91 34-120 (360)
40 KOG0105 Alternative splicing f 99.4 6.3E-13 1.4E-17 108.9 10.2 81 10-93 3-84 (241)
41 cd00590 RRM RRM (RNA recogniti 99.4 1.5E-12 3.2E-17 90.0 9.5 73 15-88 1-74 (74)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.5E-12 3.2E-17 123.9 12.0 78 10-92 272-351 (481)
43 KOG4205 RNA-binding protein mu 99.4 2.4E-13 5.3E-18 121.5 6.1 82 12-93 5-86 (311)
44 KOG0131 Splicing factor 3b, su 99.4 3.2E-13 7E-18 110.2 6.0 82 9-90 5-87 (203)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.4E-12 3.1E-17 124.0 11.3 74 13-92 2-78 (481)
46 KOG0109 RNA-binding protein LA 99.4 8.6E-13 1.9E-17 114.6 7.8 83 14-104 3-86 (346)
47 KOG0130 RNA-binding protein RB 99.4 2E-12 4.4E-17 100.9 7.8 89 6-94 65-154 (170)
48 KOG0146 RNA-binding protein ET 99.3 1.2E-12 2.6E-17 112.7 5.3 86 8-93 280-366 (371)
49 smart00361 RRM_1 RNA recogniti 99.3 6.3E-12 1.4E-16 88.7 7.8 62 26-87 1-70 (70)
50 KOG0127 Nucleolar protein fibr 99.3 4.1E-12 9E-17 118.2 8.5 81 12-93 116-197 (678)
51 KOG0127 Nucleolar protein fibr 99.3 6.2E-12 1.4E-16 117.1 9.2 83 10-92 289-378 (678)
52 KOG0415 Predicted peptidyl pro 99.3 4.3E-12 9.3E-17 112.9 7.0 88 4-91 230-318 (479)
53 KOG4212 RNA-binding protein hn 99.3 1.1E-11 2.5E-16 112.8 8.8 79 11-90 42-122 (608)
54 KOG4205 RNA-binding protein mu 99.3 8.4E-12 1.8E-16 111.7 7.1 85 13-97 97-181 (311)
55 KOG0153 Predicted RNA-binding 99.2 2.8E-11 6E-16 107.5 9.2 81 5-91 220-302 (377)
56 KOG0114 Predicted RNA-binding 99.2 3.5E-11 7.6E-16 90.0 8.1 79 11-92 16-95 (124)
57 KOG0124 Polypyrimidine tract-b 99.2 4.7E-12 1E-16 113.0 3.9 129 13-141 113-259 (544)
58 KOG0131 Splicing factor 3b, su 99.2 2.3E-11 5E-16 99.4 6.5 87 10-96 93-181 (203)
59 PF13893 RRM_5: RNA recognitio 99.2 6.6E-11 1.4E-15 79.6 7.7 55 30-89 1-56 (56)
60 KOG0123 Polyadenylate-binding 99.2 4.3E-11 9.4E-16 110.0 8.7 82 12-96 75-157 (369)
61 KOG0145 RNA-binding protein EL 99.2 1E-10 2.2E-15 100.5 9.9 84 9-92 274-358 (360)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.4E-15 111.2 9.7 77 8-90 170-258 (509)
63 KOG0147 Transcriptional coacti 99.2 4E-11 8.7E-16 111.8 6.0 80 14-93 279-359 (549)
64 KOG0146 RNA-binding protein ET 99.1 6.5E-11 1.4E-15 102.1 5.6 85 12-97 18-106 (371)
65 KOG0116 RasGAP SH3 binding pro 99.1 9.2E-10 2E-14 102.1 12.9 80 12-91 287-366 (419)
66 KOG0109 RNA-binding protein LA 99.1 1.3E-10 2.9E-15 101.2 5.8 75 10-92 75-150 (346)
67 KOG0132 RNA polymerase II C-te 99.1 2.1E-10 4.5E-15 110.6 7.6 80 11-96 419-499 (894)
68 KOG4208 Nucleolar RNA-binding 99.1 4.5E-10 9.8E-15 93.5 7.7 85 8-92 44-130 (214)
69 KOG4212 RNA-binding protein hn 99.1 2.8E-10 6.2E-15 103.8 6.9 81 4-89 527-608 (608)
70 KOG4206 Spliceosomal protein s 99.0 8.4E-10 1.8E-14 93.2 8.0 81 10-93 6-91 (221)
71 KOG0124 Polypyrimidine tract-b 99.0 8.1E-10 1.8E-14 98.9 5.8 82 9-90 206-288 (544)
72 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.3E-09 2.9E-14 102.2 7.3 81 10-90 402-483 (940)
73 KOG2591 c-Mpl binding protein, 98.9 9.9E-09 2.1E-13 96.1 12.5 74 9-89 171-249 (684)
74 KOG0110 RNA-binding protein (R 98.9 2.1E-09 4.6E-14 103.0 8.3 78 13-90 515-596 (725)
75 KOG0123 Polyadenylate-binding 98.9 3.7E-09 7.9E-14 97.3 8.0 73 14-92 2-75 (369)
76 KOG0110 RNA-binding protein (R 98.9 1.4E-09 3E-14 104.3 4.6 83 10-92 610-693 (725)
77 KOG0226 RNA-binding proteins [ 98.9 1.6E-09 3.5E-14 92.9 4.1 83 8-90 185-268 (290)
78 KOG0533 RRM motif-containing p 98.9 1.1E-08 2.3E-13 88.6 9.0 83 9-92 79-162 (243)
79 KOG4209 Splicing factor RNPS1, 98.8 6.8E-09 1.5E-13 89.7 7.0 85 8-92 96-180 (231)
80 KOG4211 Splicing factor hnRNP- 98.8 3.2E-08 7E-13 91.6 9.2 80 9-91 6-85 (510)
81 KOG1457 RNA binding protein (c 98.7 1.3E-07 2.8E-12 80.0 10.3 92 9-100 30-126 (284)
82 KOG4454 RNA binding protein (R 98.7 6.9E-09 1.5E-13 87.3 2.3 79 9-89 5-84 (267)
83 KOG4849 mRNA cleavage factor I 98.6 3.6E-06 7.8E-11 75.4 18.0 77 11-87 78-157 (498)
84 KOG1548 Transcription elongati 98.6 1.2E-07 2.6E-12 84.6 8.1 80 10-90 131-219 (382)
85 KOG4660 Protein Mei2, essentia 98.6 3.4E-08 7.4E-13 92.7 3.6 74 7-85 69-143 (549)
86 KOG0106 Alternative splicing f 98.5 7.3E-08 1.6E-12 81.9 4.3 69 14-90 2-71 (216)
87 PF04059 RRM_2: RNA recognitio 98.4 3.5E-06 7.5E-11 63.2 8.8 78 13-90 1-85 (97)
88 KOG0151 Predicted splicing reg 98.3 8.9E-07 1.9E-11 85.3 6.6 82 9-90 170-255 (877)
89 KOG4211 Splicing factor hnRNP- 98.3 1.7E-06 3.7E-11 80.4 7.6 79 11-90 101-180 (510)
90 KOG1995 Conserved Zn-finger pr 98.3 8.6E-07 1.9E-11 79.6 4.5 85 8-92 61-154 (351)
91 KOG0120 Splicing factor U2AF, 98.2 1.2E-06 2.6E-11 82.8 5.0 87 9-95 285-372 (500)
92 KOG0147 Transcriptional coacti 98.2 2.5E-07 5.5E-12 86.8 0.5 88 8-95 174-261 (549)
93 KOG4210 Nuclear localization s 98.0 5.2E-06 1.1E-10 74.0 3.9 81 12-92 183-264 (285)
94 PF11608 Limkain-b1: Limkain b 98.0 2.4E-05 5.3E-10 56.7 6.1 68 14-91 3-76 (90)
95 PF08777 RRM_3: RNA binding mo 97.8 1.7E-05 3.6E-10 60.5 3.8 70 14-89 2-77 (105)
96 KOG0106 Alternative splicing f 97.8 1.6E-05 3.4E-10 67.8 3.9 73 10-90 96-169 (216)
97 KOG1190 Polypyrimidine tract-b 97.8 9.5E-05 2.1E-09 67.7 8.7 76 13-93 297-374 (492)
98 KOG1457 RNA binding protein (c 97.8 1.8E-05 3.9E-10 67.2 3.9 65 8-76 205-269 (284)
99 KOG1855 Predicted RNA-binding 97.8 2.6E-05 5.7E-10 71.6 4.3 70 9-78 227-309 (484)
100 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.1E-05 2E-09 49.3 5.5 52 14-72 2-53 (53)
101 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00031 6.7E-09 53.0 7.6 80 10-90 3-90 (100)
102 KOG0129 Predicted RNA-binding 97.6 0.00024 5.3E-09 66.7 8.4 67 9-75 366-433 (520)
103 COG5175 MOT2 Transcriptional r 97.6 0.00014 3E-09 65.2 6.1 79 12-90 113-201 (480)
104 KOG4307 RNA binding protein RB 97.6 0.0002 4.3E-09 69.4 7.5 77 12-88 866-943 (944)
105 KOG0129 Predicted RNA-binding 97.5 0.00022 4.8E-09 67.0 6.9 65 9-74 255-325 (520)
106 KOG4206 Spliceosomal protein s 97.5 0.00044 9.5E-09 58.8 7.9 75 10-89 143-219 (221)
107 KOG1190 Polypyrimidine tract-b 97.5 6.8E-05 1.5E-09 68.6 3.1 74 11-90 26-102 (492)
108 KOG1365 RNA-binding protein Fu 97.5 0.0019 4.1E-08 59.0 11.8 81 9-90 276-360 (508)
109 KOG0105 Alternative splicing f 97.2 0.0015 3.2E-08 54.3 7.2 77 6-89 108-187 (241)
110 PF10309 DUF2414: Protein of u 97.1 0.0029 6.3E-08 43.4 7.1 57 11-75 3-62 (62)
111 KOG1365 RNA-binding protein Fu 97.1 0.00038 8.3E-09 63.4 3.2 74 12-86 160-237 (508)
112 KOG1456 Heterogeneous nuclear 97.1 0.038 8.2E-07 50.6 15.7 85 5-94 112-201 (494)
113 KOG2314 Translation initiation 97.1 0.0027 5.9E-08 60.5 8.5 79 10-89 55-141 (698)
114 PF08952 DUF1866: Domain of un 97.0 0.003 6.6E-08 50.6 7.4 74 11-92 25-107 (146)
115 KOG3152 TBP-binding protein, a 97.0 0.00034 7.3E-09 60.5 1.9 72 12-83 73-157 (278)
116 KOG1548 Transcription elongati 97.0 0.0036 7.8E-08 56.4 8.4 78 9-90 261-350 (382)
117 KOG1456 Heterogeneous nuclear 97.0 0.0098 2.1E-07 54.3 11.0 80 8-92 282-363 (494)
118 KOG0112 Large RNA-binding prot 96.9 0.00024 5.1E-09 70.6 -0.3 120 8-128 367-491 (975)
119 KOG0120 Splicing factor U2AF, 96.8 0.0035 7.5E-08 59.7 7.1 62 29-90 425-490 (500)
120 PF08675 RNA_bind: RNA binding 96.8 0.0035 7.6E-08 45.5 5.3 58 11-76 6-63 (87)
121 KOG0128 RNA-binding protein SA 96.6 0.001 2.3E-08 65.8 2.1 78 13-91 736-814 (881)
122 KOG2202 U2 snRNP splicing fact 96.6 0.00085 1.8E-08 58.1 1.0 63 29-92 84-148 (260)
123 KOG0128 RNA-binding protein SA 96.4 0.00017 3.7E-09 71.2 -5.0 71 11-81 665-735 (881)
124 KOG4676 Splicing factor, argin 96.4 0.0063 1.4E-07 55.7 5.4 76 14-89 8-86 (479)
125 KOG2193 IGF-II mRNA-binding pr 96.2 0.0021 4.6E-08 59.3 1.6 81 14-100 2-84 (584)
126 KOG0115 RNA-binding protein p5 95.9 0.0078 1.7E-07 52.3 3.5 61 14-75 32-92 (275)
127 KOG4307 RNA binding protein RB 95.9 0.009 1.9E-07 58.3 4.2 80 9-89 430-511 (944)
128 KOG1996 mRNA splicing factor [ 95.8 0.032 7E-07 49.5 6.8 64 27-90 300-365 (378)
129 KOG4285 Mitotic phosphoprotein 95.6 0.052 1.1E-06 48.3 7.4 78 8-92 192-270 (350)
130 PF15023 DUF4523: Protein of u 95.4 0.065 1.4E-06 42.9 6.8 75 9-90 82-160 (166)
131 KOG2416 Acinus (induces apopto 95.2 0.016 3.4E-07 55.8 3.1 76 9-90 440-520 (718)
132 KOG4210 Nuclear localization s 95.2 0.017 3.6E-07 51.7 3.1 83 11-93 86-169 (285)
133 KOG2068 MOT2 transcription fac 94.9 0.008 1.7E-07 54.1 0.3 79 13-91 77-162 (327)
134 KOG2135 Proteins containing th 94.7 0.026 5.6E-07 53.0 3.0 76 10-91 369-445 (526)
135 KOG0112 Large RNA-binding prot 94.5 0.07 1.5E-06 53.6 5.6 80 9-94 451-533 (975)
136 KOG2253 U1 snRNP complex, subu 92.9 0.055 1.2E-06 52.7 1.9 72 9-89 36-108 (668)
137 PF03880 DbpA: DbpA RNA bindin 92.3 0.51 1.1E-05 33.2 5.8 66 15-89 2-74 (74)
138 PF04847 Calcipressin: Calcipr 91.7 0.77 1.7E-05 38.4 7.1 60 26-91 8-70 (184)
139 PF03467 Smg4_UPF3: Smg-4/UPF3 90.0 0.27 5.9E-06 40.8 2.8 82 10-91 4-97 (176)
140 PF07576 BRAP2: BRCA1-associat 89.5 3.4 7.4E-05 31.6 8.3 64 13-78 13-78 (110)
141 KOG4410 5-formyltetrahydrofola 89.0 1.6 3.4E-05 38.9 6.9 51 9-65 326-377 (396)
142 KOG4574 RNA-binding protein (c 88.9 0.26 5.7E-06 49.5 2.2 71 14-90 299-372 (1007)
143 KOG4483 Uncharacterized conser 84.2 2.7 5.8E-05 39.1 6.0 65 12-83 390-455 (528)
144 PF11767 SET_assoc: Histone ly 82.2 5.8 0.00013 27.5 5.7 54 23-85 10-64 (66)
145 KOG4660 Protein Mei2, essentia 81.6 2.4 5.3E-05 40.8 4.8 53 38-90 414-471 (549)
146 PF07530 PRE_C2HC: Associated 77.9 5 0.00011 27.9 4.3 59 28-89 2-62 (68)
147 PF10567 Nab6_mRNP_bdg: RNA-re 77.8 5.8 0.00013 35.5 5.6 83 9-91 11-107 (309)
148 smart00596 PRE_C2HC PRE_C2HC d 73.5 8.1 0.00018 27.0 4.4 59 28-89 2-62 (69)
149 KOG4676 Splicing factor, argin 70.3 0.52 1.1E-05 43.6 -2.8 63 13-79 151-213 (479)
150 PRK14548 50S ribosomal protein 69.8 20 0.00043 26.1 5.9 57 16-75 23-81 (84)
151 PF15513 DUF4651: Domain of un 69.1 12 0.00026 25.6 4.3 18 28-45 9-26 (62)
152 KOG4454 RNA binding protein (R 67.0 1.1 2.3E-05 38.6 -1.4 66 8-74 75-144 (267)
153 PF03468 XS: XS domain; Inter 67.0 12 0.00026 28.9 4.6 46 25-73 29-75 (116)
154 KOG0804 Cytoplasmic Zn-finger 62.9 28 0.0006 33.1 6.8 64 11-76 72-136 (493)
155 PF07292 NID: Nmi/IFP 35 domai 59.3 19 0.00042 26.4 4.2 26 9-34 48-73 (88)
156 COG0724 RNA-binding proteins ( 57.0 18 0.00039 30.0 4.4 64 8-71 220-283 (306)
157 PF07292 NID: Nmi/IFP 35 domai 54.9 22 0.00049 26.0 3.9 32 58-89 1-34 (88)
158 COG5193 LHP1 La protein, small 51.9 6.1 0.00013 36.8 0.6 61 13-73 174-244 (438)
159 KOG2318 Uncharacterized conser 48.6 87 0.0019 30.8 7.8 80 10-89 171-305 (650)
160 PF02714 DUF221: Domain of unk 47.9 17 0.00037 32.5 3.0 32 58-90 1-32 (325)
161 PF08206 OB_RNB: Ribonuclease 46.5 4.7 0.0001 26.9 -0.7 37 54-90 7-44 (58)
162 PF00403 HMA: Heavy-metal-asso 45.1 84 0.0018 20.4 6.1 56 15-76 1-60 (62)
163 KOG2295 C2H2 Zn-finger protein 44.2 3 6.5E-05 40.3 -2.6 64 12-75 230-293 (648)
164 TIGR03636 L23_arch archaeal ri 44.2 1E+02 0.0022 22.0 5.8 58 15-75 15-74 (77)
165 KOG2891 Surface glycoprotein [ 42.8 25 0.00053 31.5 3.0 36 11-46 147-194 (445)
166 PRK11901 hypothetical protein; 42.3 56 0.0012 29.8 5.2 56 20-79 249-308 (327)
167 KOG4213 RNA-binding protein La 41.5 33 0.00071 28.7 3.3 51 25-75 118-170 (205)
168 PTZ00191 60S ribosomal protein 40.2 89 0.0019 25.1 5.6 54 16-72 84-139 (145)
169 KOG4019 Calcineurin-mediated s 39.9 25 0.00055 29.3 2.5 75 11-91 8-89 (193)
170 PF09707 Cas_Cas2CT1978: CRISP 39.2 63 0.0014 23.6 4.2 48 13-63 25-72 (86)
171 PF03439 Spt5-NGN: Early trans 37.2 68 0.0015 22.9 4.1 26 53-78 42-67 (84)
172 KOG4008 rRNA processing protei 37.1 29 0.00063 30.2 2.5 35 9-43 36-70 (261)
173 PF11411 DNA_ligase_IV: DNA li 36.9 26 0.00056 21.3 1.5 16 23-38 19-34 (36)
174 PF04026 SpoVG: SpoVG; InterP 36.1 72 0.0016 23.1 4.1 26 39-64 2-27 (84)
175 COG5353 Uncharacterized protei 36.0 1.9E+02 0.004 23.5 6.7 53 14-66 88-153 (161)
176 KOG3424 40S ribosomal protein 35.0 1.3E+02 0.0027 23.5 5.4 47 24-71 34-85 (132)
177 KOG0156 Cytochrome P450 CYP2 s 32.3 74 0.0016 30.7 4.7 59 17-84 36-97 (489)
178 PF08734 GYD: GYD domain; Int 31.0 2.1E+02 0.0044 20.8 5.9 44 27-74 22-66 (91)
179 PRK10905 cell division protein 29.3 84 0.0018 28.6 4.2 58 21-79 252-310 (328)
180 PF13046 DUF3906: Protein of u 28.8 61 0.0013 22.3 2.5 34 25-60 30-63 (64)
181 PF08544 GHMP_kinases_C: GHMP 28.8 1.9E+02 0.004 19.8 5.3 42 28-75 37-79 (85)
182 PRK01178 rps24e 30S ribosomal 27.8 1.6E+02 0.0035 22.0 4.9 47 24-71 30-81 (99)
183 PF14401 RLAN: RimK-like ATPgr 27.7 1.4E+02 0.003 24.1 4.9 62 10-71 84-146 (153)
184 PRK13259 regulatory protein Sp 27.0 1.1E+02 0.0025 22.7 3.9 26 39-64 2-27 (94)
185 PRK11558 putative ssRNA endonu 25.5 1.3E+02 0.0028 22.5 4.0 50 13-65 27-76 (97)
186 TIGR01873 cas_CT1978 CRISPR-as 25.5 62 0.0013 23.7 2.2 49 13-64 25-74 (87)
187 COG4010 Uncharacterized protei 25.0 1.7E+02 0.0037 23.7 4.7 47 20-76 118-164 (170)
188 PRK10629 EnvZ/OmpR regulon mod 24.3 3.5E+02 0.0075 21.1 6.6 68 14-89 36-108 (127)
189 COG3254 Uncharacterized conser 23.7 3.3E+02 0.0072 20.6 6.5 43 29-74 28-70 (105)
190 PF10281 Ish1: Putative stress 23.1 79 0.0017 18.9 2.1 17 24-40 3-19 (38)
191 PRK11230 glycolate oxidase sub 22.7 2.6E+02 0.0057 27.0 6.6 49 26-75 202-254 (499)
192 PF08442 ATP-grasp_2: ATP-gras 22.2 1.6E+02 0.0035 24.8 4.5 53 25-80 25-81 (202)
193 cd04908 ACT_Bt0572_1 N-termina 21.8 2.4E+02 0.0053 18.4 8.3 58 15-77 3-62 (66)
194 PF15407 Spo7_2_N: Sporulation 21.0 38 0.00082 23.5 0.3 28 8-35 22-49 (67)
195 KOG4365 Uncharacterized conser 20.9 15 0.00033 34.7 -2.1 76 14-90 4-80 (572)
196 PF05189 RTC_insert: RNA 3'-te 20.4 1.5E+02 0.0032 21.8 3.6 49 15-63 12-65 (103)
197 PF07876 Dabb: Stress responsi 20.2 3.2E+02 0.0069 19.2 7.2 56 18-73 6-72 (97)
198 KOG0226 RNA-binding proteins [ 20.1 36 0.00077 30.1 0.1 77 10-87 93-173 (290)
199 PF14111 DUF4283: Domain of un 20.1 61 0.0013 25.2 1.4 70 15-89 17-89 (153)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=6.4e-23 Score=172.63 Aligned_cols=92 Identities=68% Similarity=1.168 Sum_probs=85.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
..+..|...++||||+|+|++.+|+|+++||+||+|+++.|+.|+.|+++||||||+|+|.|+|++||+..+.+||||+.
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC-CCCCC
Q 043732 85 NCNLAHL-GRTRP 96 (249)
Q Consensus 85 ~V~~a~~-~~~~~ 96 (249)
+|++|.. .+.|.
T Consensus 84 NcnlA~lg~~pR~ 96 (247)
T KOG0149|consen 84 NCNLASLGGKPRP 96 (247)
T ss_pred ccchhhhcCccCC
Confidence 9999987 44443
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=4.2e-20 Score=148.71 Aligned_cols=84 Identities=40% Similarity=0.737 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.+ +.+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 455789999999999999999999999999999999999999999999999999999999999986 5889999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 96443
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.2e-17 Score=152.25 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 86 (249)
.+....++|||+||+++++|++|+++|+.||+|++|+|++|+.|+++||||||+|.++++|++||+.|+ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 456678999999999999999999999999999999999999999999999999999999999999874 7799999999
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
.+++..
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998653
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.9e-17 Score=150.50 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
...++|||+||++++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.+ +..|+||+|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34457999999999999999999999999999999999999999999999999999999999987 57799999999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6554
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=7e-17 Score=146.75 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.|++|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999875 67999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=3.4e-16 Score=142.69 Aligned_cols=85 Identities=25% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCC--eEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGG--RKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 85 (249)
.+...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++ .+|++ ++|+
T Consensus 189 ~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 189 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999975 55655 7899
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++...
T Consensus 269 V~~a~~~~ 276 (346)
T TIGR01659 269 VRLAEEHG 276 (346)
T ss_pred EEECCccc
Confidence 99996543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=1.7e-15 Score=146.33 Aligned_cols=85 Identities=32% Similarity=0.542 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||++++++++|+++|++||.|++|+|++| .++++||||||+|++.++|++||+.+ +.+|+|++|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 57999999999999999999999986 5789999999999
Q ss_pred ccCCCCC
Q 043732 89 AHLGRTR 95 (249)
Q Consensus 89 a~~~~~~ 95 (249)
|+.+..+
T Consensus 361 a~~k~~~ 367 (562)
T TIGR01628 361 AQRKEQR 367 (562)
T ss_pred ccCcHHH
Confidence 9765543
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=6.8e-16 Score=107.46 Aligned_cols=69 Identities=38% Similarity=0.659 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 16 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
|||+|||.++++++|+++|++||.|..+++..+ .+++.+++|||+|++.++|++|++.+ +..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 57899999999999999999999975 6779999885
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.9e-16 Score=130.83 Aligned_cols=83 Identities=27% Similarity=0.347 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCC-eeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSP-MIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 87 (249)
...+.++|-|.||+++++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|+++|+|.+||+.|+. -++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 445788999999999999999999999999999999999999999999999999999999999999864 4888899999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
|+++
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9964
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.1e-15 Score=127.23 Aligned_cols=81 Identities=30% Similarity=0.537 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
+...+.|+||||||+..++|++||+.|+.||.|.+|+|.+| +||+||.|+++|.|.+||..+ +.+|.|..++|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 46788999999999999999999999999999999999988 589999999999999999996 58899999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
.|.+....
T Consensus 233 sWGKe~~~ 240 (321)
T KOG0148|consen 233 SWGKEGDD 240 (321)
T ss_pred eccccCCC
Confidence 99965443
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=133.71 Aligned_cols=83 Identities=33% Similarity=0.573 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
+.....++|+|.|||+...|-||+.+|++||+|++|+|+.+. .-+||||||+|++.+||+||-+++ +.+|.||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 345667999999999999999999999999999999999875 568999999999999999999997 57799999999
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
+.|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999644
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.2e-15 Score=129.54 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
..++|||+||++.++|++|+++|+.||+|++|+|++|+. .+|||||+|+++++|++||...+..|+|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 367999999999999999999999999999999998864 4789999999999999999866789999999999985
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=2.6e-15 Score=105.37 Aligned_cols=69 Identities=32% Similarity=0.594 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 16 LFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 16 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
|||+|||+++++++|+++|+.+|.|.++++..+++ ++.+++|||+|.+.++|++|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999976 789999885
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=4.1e-15 Score=143.18 Aligned_cols=82 Identities=20% Similarity=0.363 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
...++|||+||+.++++++|+++|+.||+|++|+|.+|+.++++||||||+|++.++|.+||+.++ .+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999975 6799999999999
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
..+
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 643
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.2e-14 Score=130.43 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.....+.|||+||+.++|||.|+++|++||+|++|+.++| ||||.|.++++|.+|++.++ ++|+|..|+|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 4456788999999999999999999999999999988866 99999999999999999974 88999999999
Q ss_pred EccCCCCCCCC
Q 043732 88 LAHLGRTRPDL 98 (249)
Q Consensus 88 ~a~~~~~~~~~ 98 (249)
+|++..+++..
T Consensus 327 LAKP~~k~k~~ 337 (506)
T KOG0117|consen 327 LAKPVDKKKKE 337 (506)
T ss_pred ecCChhhhccc
Confidence 99876554433
No 16
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2e-15 Score=116.59 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
...++++|||+||+..++||.|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|+.|++.++ ..++.+.|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999974 66999999999
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 87
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=4.7e-15 Score=142.77 Aligned_cols=80 Identities=29% Similarity=0.525 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.+ +..|+||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999987 46799999999876
Q ss_pred c
Q 043732 90 H 90 (249)
Q Consensus 90 ~ 90 (249)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=8.5e-15 Score=141.43 Aligned_cols=76 Identities=32% Similarity=0.542 Sum_probs=72.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
+|||+||+.+++|++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|+|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999875 66999999999985
No 19
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=7.9e-15 Score=127.50 Aligned_cols=82 Identities=28% Similarity=0.519 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.+..-+||||+.|+.+++|++|++.|+.||.|+.|.|++|+.||++||||||+|+++.+.+.|.+.- +..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999985 678999999999
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 874
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5.3e-15 Score=127.15 Aligned_cols=81 Identities=37% Similarity=0.577 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHL 91 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~ 91 (249)
..-|||+.|..+++-|+||+.|.+||+|.+++|++|.+|+|+|||+||.|.++++|++||..|+ ..|++|.|+-+||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5579999999999999999999999999999999999999999999999999999999999986 679999999999976
Q ss_pred CC
Q 043732 92 GR 93 (249)
Q Consensus 92 ~~ 93 (249)
|.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 21
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=4.8e-15 Score=123.04 Aligned_cols=87 Identities=28% Similarity=0.475 Sum_probs=80.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
+.+-..-.+|-|-||..-++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.| +.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 445566788999999999999999999999999999999999999999999999999999999999998 5789999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|.+|.-.+
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99996544
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=1.7e-14 Score=135.72 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
.+...++|||+|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||...+..|.|+.|.|..
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999778889999999998
Q ss_pred ccCC
Q 043732 89 AHLG 92 (249)
Q Consensus 89 a~~~ 92 (249)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7543
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=6.8e-15 Score=133.28 Aligned_cols=89 Identities=30% Similarity=0.471 Sum_probs=79.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCC--e
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-PMIGG--R 82 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~G--r 82 (249)
...|.+.-++||+-||..++|+|||++|++||.|.+|.|++||.|+.+||||||+|.+.++|.+|+..+ + ++|-| .
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 456778889999999999999999999999999999999999999999999999999999999999986 3 45654 5
Q ss_pred EeEEEEccCCCCC
Q 043732 83 KANCNLAHLGRTR 95 (249)
Q Consensus 83 ~l~V~~a~~~~~~ 95 (249)
+|.|+.|+..+.+
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7899999766655
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.8e-14 Score=137.11 Aligned_cols=78 Identities=28% Similarity=0.417 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-Cee-CCeEeEEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMI-GGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i-~Gr~l~V~~ 88 (249)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.|+|++||+.++ .+| .|+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 44689999999999999999999999999999999999 789999999999999999999999975 555 477766654
Q ss_pred c
Q 043732 89 A 89 (249)
Q Consensus 89 a 89 (249)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.4e-13 Score=130.71 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQF--GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
...++|||+||+++++|++|+++|++| |+|++|+++ ++||||+|++.++|++||+.+ +.+|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 999999876 359999999999999999986 578999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
|+++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 997653
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.8e-15 Score=123.25 Aligned_cols=87 Identities=31% Similarity=0.502 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.....++||||+|.++++|.-|...|-.||+|++|.++.|-.++++|||+||+|...|+|..||..|+ .+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999986 77999999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
+|++.+.+
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99866544
No 27
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=6.5e-14 Score=119.83 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
....+|||+||++.++|++|+++|+.||+|.+|+|++|. +.++||||+|+++++++.||...+.+|.+++|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 345799999999999999999999999999999999884 45689999999999999999888999999999998764
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=116.01 Aligned_cols=75 Identities=27% Similarity=0.457 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
.-.++||||||+..+++.||+.+|..||.|.+|.|-+.+ .|||||+|++..+|+.|+..|+ ..|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999887654 6899999999999999999984 7899999999999
Q ss_pred c
Q 043732 90 H 90 (249)
Q Consensus 90 ~ 90 (249)
.
T Consensus 83 ~ 83 (195)
T KOG0107|consen 83 T 83 (195)
T ss_pred c
Confidence 4
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=9.5e-14 Score=132.26 Aligned_cols=82 Identities=28% Similarity=0.495 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
...++|||+||+..+++++|+++|+.||.|+.+.|++++.+|+++|||||+|.+.++|++||+.++ ..|+|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999999874 7799999999999
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 644
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.6e-15 Score=122.34 Aligned_cols=82 Identities=28% Similarity=0.516 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
.++.-|||||||.+.||.||..+|++||+|++|.+++|+.||+++||||++|++..+.--|+..++ ..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 457789999999999999999999999999999999999999999999999999998888888876 5599999999977
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
..-
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=7.2e-14 Score=131.47 Aligned_cols=79 Identities=35% Similarity=0.567 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
..++|||+||+.++++++|+++|+.||.|++|.|++++.+++++|||||+|.+.++|++||+.+ +..|.|++|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3689999999999999999999999999999999999999999999999999999999999987 467999999999986
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=1.1e-13 Score=95.25 Aligned_cols=71 Identities=31% Similarity=0.569 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
+|||+||+.++++++|+++|++||.|.++.+..++ +.++++|||+|.+.++|++|++.++ ..++|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999875 77999998874
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.2e-14 Score=128.08 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee-CCeEeEEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI-GGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i-~Gr~l~V~~ 88 (249)
.-.|.||||.||.++.|+||.-+|++.|+|-+++||+|+.+|.+||||||+|.++++|++||+.+ +++| .||.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999996 5776 589888887
Q ss_pred c
Q 043732 89 A 89 (249)
Q Consensus 89 a 89 (249)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 6
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.4e-14 Score=131.20 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCC--ee--CCeEeEEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSP--MI--GGRKANCN 87 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~--~i--~Gr~l~V~ 87 (249)
+.++||||-|+..++|+|++++|++||.|++|.|++|.. +.+|||+||+|+++|.|..||+.++. .+ +..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 378999999999999999999999999999999999986 99999999999999999999999863 34 45689999
Q ss_pred EccCCCCCCCC
Q 043732 88 LAHLGRTRPDL 98 (249)
Q Consensus 88 ~a~~~~~~~~~ 98 (249)
||+.++.+..+
T Consensus 202 FADtqkdk~~~ 212 (510)
T KOG0144|consen 202 FADTQKDKDGK 212 (510)
T ss_pred ecccCCCchHH
Confidence 99887776544
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.7e-13 Score=93.88 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=65.1
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 18 VGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 18 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
|+||+.++++++|+++|+.||.|.++.+..++.+++++|+|||+|.+.++|++|++.++ ..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988889999999999999999999999875 77999998873
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=117.29 Aligned_cols=78 Identities=31% Similarity=0.607 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
.++|||+||+.++++++|+++|.+||.|..+.+..|+.+++++|||||+|.+.++|.+||+.++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999986 78999999999974
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=127.02 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCH--HHHHHHHhCCC-CeeCCeEe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP--GSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~--e~A~~Al~~~~-~~i~Gr~l 84 (249)
++.....+||||||.+++++++|+++|+.||.|.+|.|+ +.|| ||||||+|.+. +++.+||+.|+ .++.|+.|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 445667899999999999999999999999999999999 4466 99999999987 68999999975 77999999
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
+|..|+
T Consensus 81 KVNKAK 86 (759)
T PLN03213 81 RLEKAK 86 (759)
T ss_pred EEeecc
Confidence 999995
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=7.9e-14 Score=129.59 Aligned_cols=81 Identities=31% Similarity=0.559 Sum_probs=77.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~~ 92 (249)
+.|||||||.+++||+|.++|+..|.|.+++++.|+.||+.|||+|++|.+.++|++|++.++ .++.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999985 7899999999999755
Q ss_pred CC
Q 043732 93 RT 94 (249)
Q Consensus 93 ~~ 94 (249)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.2e-13 Score=116.75 Aligned_cols=86 Identities=28% Similarity=0.462 Sum_probs=79.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l 84 (249)
+...+...++|.|.-||..+++||||.+|...|+|++|++++|+-+|.+-||+||.|.+++||++||..++ -.+..|.|
T Consensus 34 ~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 34 GNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred CCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 34457778899999999999999999999999999999999999999999999999999999999999986 45999999
Q ss_pred EEEEccC
Q 043732 85 NCNLAHL 91 (249)
Q Consensus 85 ~V~~a~~ 91 (249)
+|++|.+
T Consensus 114 KVSyARP 120 (360)
T KOG0145|consen 114 KVSYARP 120 (360)
T ss_pred EEEeccC
Confidence 9999953
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6.3e-13 Score=108.86 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+|||.++.|.||+++|.+||.|.+|.|... -....||||+|++..+|+.||... +..++|.+|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 356899999999999999999999999999999988432 334689999999999999999985 5779999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+...+
T Consensus 80 prggr 84 (241)
T KOG0105|consen 80 PRGGR 84 (241)
T ss_pred ccCCC
Confidence 96554
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.5e-12 Score=89.99 Aligned_cols=73 Identities=33% Similarity=0.613 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
+|+|+|||.++++++|+++|+.+|.|.++.+..++.+ +.+++|||+|.+.++|..|++.++ ..++|++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988764 779999999999999999999975 559999998864
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.5e-12 Score=123.90 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 10 DSANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 10 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
....++|||+||++ .+++++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.| +..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44678999999998 69999999999999999999999874 689999999999999999987 577999999999
Q ss_pred EccCC
Q 043732 88 LAHLG 92 (249)
Q Consensus 88 ~a~~~ 92 (249)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98544
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.41 E-value=2.4e-13 Score=121.47 Aligned_cols=82 Identities=39% Similarity=0.739 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
+.++|||++|+|++++|.|++.|++||+|.+|.+++|+.+++++||+||+|++.+...++|....+.|+|+.|.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 88999999999999999999999999999999999999999999999999999999999999888999999999999965
Q ss_pred CC
Q 043732 92 GR 93 (249)
Q Consensus 92 ~~ 93 (249)
+.
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 54
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=3.2e-13 Score=110.20 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
+.....+|||+||+..++++.|.++|-+.|.|+++.+.+|+.+.+.+|||||+|.++|+|+=||+.++ ..|.||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999987 44899999999
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 996
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.4e-12 Score=124.00 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC---CCeeCCeEeEEEEc
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP---SPMIGGRKANCNLA 89 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~---~~~i~Gr~l~V~~a 89 (249)
+++|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ +..|+|++|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999854 579999999999999999863 46799999999999
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=8.6e-13 Score=114.61 Aligned_cols=83 Identities=30% Similarity=0.476 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~~ 92 (249)
.+|||||||.++++.+|+.+|++||+|++|.|+++ ||||..+++..++.||..|+ ..|+|..|+|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999854 99999999999999999875 6799999999999887
Q ss_pred CCCCCCCCCCCC
Q 043732 93 RTRPDLPSFGHP 104 (249)
Q Consensus 93 ~~~~~~~~~g~~ 104 (249)
.+...+...+.+
T Consensus 75 sk~stkl~vgNi 86 (346)
T KOG0109|consen 75 SKASTKLHVGNI 86 (346)
T ss_pred CCCccccccCCC
Confidence 655555555543
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2e-12 Score=100.94 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=81.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l 84 (249)
+++.+...-.|||.++..+++|++|.+.|..||+|+.|.+-.|+.||-.|||++|+|++.++|++||..+| ..|.|..|
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 35556667789999999999999999999999999999999999999999999999999999999999986 67999999
Q ss_pred EEEEccCCCC
Q 043732 85 NCNLAHLGRT 94 (249)
Q Consensus 85 ~V~~a~~~~~ 94 (249)
.|.|+..+.+
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999975544
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.2e-12 Score=112.66 Aligned_cols=86 Identities=29% Similarity=0.423 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCe-eCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPM-IGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~-i~Gr~l~V 86 (249)
.+..+.|+|||-.||.+..+.||.+.|-.||.|++.+|..|+.|..+|+|+||.|++..+++.||..+|.. |+-|+|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999998754 99999999
Q ss_pred EEccCCC
Q 043732 87 NLAHLGR 93 (249)
Q Consensus 87 ~~a~~~~ 93 (249)
.+..+|+
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9885443
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=6.3e-12 Score=88.70 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=54.8
Q ss_pred CHHHHHHHHh----hCCCEEEEE-EEecCCC--CCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 26 NSDTLRTYFE----QFGDILEAV-VITHKNT--GRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 26 te~~L~~~F~----~~G~I~~v~-i~~d~~t--g~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|++.+ +..++|+.|++.
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3678999998 999999995 7778777 899999999999999999999996 578999999873
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=118.25 Aligned_cols=81 Identities=25% Similarity=0.446 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
..-+|+|+||||.|.+++|+.+|+.||.|.+|.|++.+. ++-+|||||.|.+..+|.+||+.++ ++|+||+|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 367899999999999999999999999999999997765 6667999999999999999999975 88999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
.+.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6.2e-12 Score=117.08 Aligned_cols=83 Identities=28% Similarity=0.512 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC------C-CeeCCe
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP------S-PMIGGR 82 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~------~-~~i~Gr 82 (249)
+...++|||+||+++++|++|.+.|++||+|..+.|+.++.|+.++|.|||.|.+..+|.+||+.- + ..|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 344589999999999999999999999999999999999999999999999999999999999874 2 348999
Q ss_pred EeEEEEccCC
Q 043732 83 KANCNLAHLG 92 (249)
Q Consensus 83 ~l~V~~a~~~ 92 (249)
.|+|.+|-.+
T Consensus 369 ~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 LLKVTLAVTR 378 (678)
T ss_pred EEeeeeccch
Confidence 9999999543
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.3e-12 Score=112.86 Aligned_cols=88 Identities=26% Similarity=0.417 Sum_probs=81.3
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe
Q 043732 4 AYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGR 82 (249)
Q Consensus 4 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr 82 (249)
...+...+..+.|||-.|.+-+++|+|+-+|+.||+|.+|.|++|+.||.+-.||||+|++.+++++|.-.| |..|+.+
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 345566778899999999999999999999999999999999999999999999999999999999999987 6779999
Q ss_pred EeEEEEccC
Q 043732 83 KANCNLAHL 91 (249)
Q Consensus 83 ~l~V~~a~~ 91 (249)
+|.|.+++.
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999999864
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=112.76 Aligned_cols=79 Identities=19% Similarity=0.444 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHH-hhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYF-EQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
...+.+||.|||.++.+.+|+++| ++.|+|+.|.++.|. +||+|||+.|+|+++|.++||++.++ ++++||.|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 345669999999999999999999 688999999999997 49999999999999999999999986 679999999997
Q ss_pred cc
Q 043732 89 AH 90 (249)
Q Consensus 89 a~ 90 (249)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 74
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.27 E-value=8.4e-12 Score=111.66 Aligned_cols=85 Identities=32% Similarity=0.577 Sum_probs=79.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccCC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHLG 92 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~~ 92 (249)
.++|||++|+.++++++|+++|++||.|.++.++.|+.+.+.+||+||+|.+++++++++...-++|+++.++|+.|.++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 56999999999999999999999999999999999999999999999999999999999999889999999999999877
Q ss_pred CCCCC
Q 043732 93 RTRPD 97 (249)
Q Consensus 93 ~~~~~ 97 (249)
.....
T Consensus 177 ~~~~~ 181 (311)
T KOG4205|consen 177 EVMQS 181 (311)
T ss_pred hhccc
Confidence 65543
No 55
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2.8e-11 Score=107.49 Aligned_cols=81 Identities=26% Similarity=0.445 Sum_probs=72.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCCe
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-PMIGGR 82 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~Gr 82 (249)
..+.+|...++|||++|.+.++|.+|+++|.+||+|++|.++.. +++|||+|.+.++|++|.++. + .+|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 44668899999999999999999999999999999999999865 459999999999999999984 5 459999
Q ss_pred EeEEEEccC
Q 043732 83 KANCNLAHL 91 (249)
Q Consensus 83 ~l~V~~a~~ 91 (249)
+|+|.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999965
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=90.01 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
.-.+.|||.|||.++|.|++-++|.+||.|..|+|-.++ ..+|-|||.|++..+|++||+.|. .-++++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345789999999999999999999999999999996554 458999999999999999999985 5699999999887
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
+..
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 543
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4.7e-12 Score=113.04 Aligned_cols=129 Identities=21% Similarity=0.326 Sum_probs=97.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHL 91 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~ 91 (249)
-|+||||.|.+++.|+.||..|..||.|++|.+.+|+-|+++|||+||+|+-+|.|.-|++.+| .+++||.|+|...+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999986 679999999986532
Q ss_pred CCCCC-------------CCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 043732 92 GRTRP-------------DLPSFGHPR----PSSAAPLFGSPGHHQPVSYNYQSAFMHPHPYWYTAY 141 (249)
Q Consensus 92 ~~~~~-------------~~~~~g~~~----~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~g~~~y 141 (249)
-.... .+....... ...+.+.|..+|.+..+..........+.+|||.-|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEY 259 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEe
Confidence 11100 111111222 225567788888876554443333344457776654
No 58
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=2.3e-11 Score=99.45 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEA-VVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.....+|||+||.++++|..|.+.|+.||.|.+. ++++|..||+++||+||.|++.|.+.+||+.++ ..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3345799999999999999999999999998764 899999999999999999999999999999975 66899999999
Q ss_pred EccCCCCCC
Q 043732 88 LAHLGRTRP 96 (249)
Q Consensus 88 ~a~~~~~~~ 96 (249)
++..+..+.
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 997655443
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6.6e-11 Score=79.58 Aligned_cols=55 Identities=25% Similarity=0.496 Sum_probs=48.4
Q ss_pred HHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 30 LRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 30 L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.+ +..++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997653 689999999999999999986 57799999999986
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.3e-11 Score=110.02 Aligned_cols=82 Identities=32% Similarity=0.494 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
+...|||.||+++++.++|.++|+.||+|++|++.+|.+ | +||| ||+|+++++|++||+.++ ..+.+++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 333499999999999999999999999999999999975 4 9999 999999999999999976 55899999999887
Q ss_pred CCCCCC
Q 043732 91 LGRTRP 96 (249)
Q Consensus 91 ~~~~~~ 96 (249)
.+..+.
T Consensus 152 ~~~er~ 157 (369)
T KOG0123|consen 152 RKEERE 157 (369)
T ss_pred chhhhc
Confidence 665543
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1e-10 Score=100.54 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.+...-.|||-||..+++|.-|.++|..||.|..|+|++|..|.+-|||+||+..+-++|..||..++ ..+.+|.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 44557789999999999999999999999999999999999999999999999999999999999976 66999999999
Q ss_pred EccCC
Q 043732 88 LAHLG 92 (249)
Q Consensus 88 ~a~~~ 92 (249)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 88543
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1.1e-10 Score=111.23 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=62.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhC------------CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQF------------GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
..+...++|||+|||.++++++|+++|+.+ +.|..+.+ .+.+|||||+|.+.++|++||+..
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 456678999999999999999999999875 22333333 456899999999999999999655
Q ss_pred CCeeCCeEeEEEEcc
Q 043732 76 SPMIGGRKANCNLAH 90 (249)
Q Consensus 76 ~~~i~Gr~l~V~~a~ 90 (249)
+..|.|+.|+|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 677999999997553
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.16 E-value=4e-11 Score=111.84 Aligned_cols=80 Identities=34% Similarity=0.569 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~~ 92 (249)
.+|||+||-.+++|++|+.+|+.||.|..|.+.+|.+||.+|||+||+|.+.++|++|++.+| -+|-|+.|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 339999999999999999999999999999999999999999999999999999999999975 5699999999988544
Q ss_pred C
Q 043732 93 R 93 (249)
Q Consensus 93 ~ 93 (249)
-
T Consensus 359 ~ 359 (549)
T KOG0147|consen 359 V 359 (549)
T ss_pred c
Confidence 3
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.5e-11 Score=102.06 Aligned_cols=85 Identities=31% Similarity=0.458 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC--CeeC--CeEeEEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS--PMIG--GRKANCN 87 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~--~~i~--Gr~l~V~ 87 (249)
+.++||||-|...-.|||++++|..||.|++|.+++..+ |.+|||+||+|++..+|+.||..+. .++- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 678999999999999999999999999999999999886 8999999999999999999999874 3343 4578999
Q ss_pred EccCCCCCCC
Q 043732 88 LAHLGRTRPD 97 (249)
Q Consensus 88 ~a~~~~~~~~ 97 (249)
+++..+.|..
T Consensus 97 ~ADTdkER~l 106 (371)
T KOG0146|consen 97 FADTDKERTL 106 (371)
T ss_pred eccchHHHHH
Confidence 9987666543
No 65
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.11 E-value=9.2e-10 Score=102.11 Aligned_cols=80 Identities=28% Similarity=0.431 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
...+|||+|||.++++++|+++|..||.|++..|......++..+||||+|.+.++++.||+.....|++++|.|+....
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999998887654335556999999999999999999997779999999998854
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.3e-10 Score=101.15 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
...+++|+|+||.+.++.+||++.|++||.|++|+|++| |+||.|+-.++|..||+.| +.+++|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 457789999999999999999999999999999999855 9999999999999999997 6889999999999
Q ss_pred ccCC
Q 043732 89 AHLG 92 (249)
Q Consensus 89 a~~~ 92 (249)
+..+
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 9654
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=2.1e-10 Score=110.64 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
.-++|||||.|+..++|.||+.+|+.||+|.+|.++.. +|||||+....++|++|+.+| +..+.++.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 34689999999999999999999999999999998754 689999999999999999997 56799999999999
Q ss_pred cCCCCCC
Q 043732 90 HLGRTRP 96 (249)
Q Consensus 90 ~~~~~~~ 96 (249)
..+-.+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 6554443
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=4.5e-10 Score=93.55 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQF-GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
..+....-+||..++..+.+.+|..+|.++ |.|+++++.+++.||.+||||||+|+++|.|+-|-+.|| ..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345566779999999999999999999988 788888888999999999999999999999999999975 668899999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988544
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=2.8e-10 Score=103.77 Aligned_cols=81 Identities=27% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCe
Q 043732 4 AYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGR 82 (249)
Q Consensus 4 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr 82 (249)
.++....++.|+|||+|||.++|+..|++-|..||.|+.+.|+. .|++|| .|.|.++++|++||..++ -.++||
T Consensus 527 g~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr 601 (608)
T KOG4212|consen 527 GNAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGR 601 (608)
T ss_pred cccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCc
Confidence 34455678899999999999999999999999999999998853 378887 899999999999999986 569999
Q ss_pred EeEEEEc
Q 043732 83 KANCNLA 89 (249)
Q Consensus 83 ~l~V~~a 89 (249)
.|+|.+.
T Consensus 602 ~I~V~y~ 608 (608)
T KOG4212|consen 602 NIKVTYF 608 (608)
T ss_pred eeeeeeC
Confidence 9999863
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.03 E-value=8.4e-10 Score=93.15 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEe
Q 043732 10 DSANRKLFVGGLAWETNSDTLRT----YFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l 84 (249)
.....+|||.||++.+..++|++ +|++||+|++|...+ |.+.||-|||.|++.+.|..|++.++ -.+-|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34445999999999999999998 999999999998864 57889999999999999999999985 45899999
Q ss_pred EEEEccCCC
Q 043732 85 NCNLAHLGR 93 (249)
Q Consensus 85 ~V~~a~~~~ 93 (249)
+|.+|+.+.
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999997553
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=8.1e-10 Score=98.91 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
+.....+|||..+..+.+|+||+.+|+.||+|++|.+-+++.++.+|||+|++|.+..+...||..+| ..++|.-|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999999999889999999999999999999999998 45999999998
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
.+-
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 774
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=1.3e-09 Score=102.18 Aligned_cols=81 Identities=26% Similarity=0.482 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
..-.++|||.+|...+...+|+.+|++||+|+-.+|+.+..+--.++|+||+..+.++|.+||+.|. .+|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3446899999999999999999999999999999999998888889999999999999999999985 679999999998
Q ss_pred cc
Q 043732 89 AH 90 (249)
Q Consensus 89 a~ 90 (249)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 85
No 73
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=98.95 E-value=9.9e-09 Score=96.13 Aligned_cols=74 Identities=11% Similarity=0.201 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh--hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFE--QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~--~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~ 83 (249)
...+.|.|+|+.|++.+.+|+++.+|+ .|-++++|.+-.+.. +||+|++++||++|.+.+. ++|.||.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 455678899999999999999999994 688999999877654 9999999999999999874 6699999
Q ss_pred eEEEEc
Q 043732 84 ANCNLA 89 (249)
Q Consensus 84 l~V~~a 89 (249)
|..++.
T Consensus 244 ImARIK 249 (684)
T KOG2591|consen 244 IMARIK 249 (684)
T ss_pred hhhhhh
Confidence 887665
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.1e-09 Score=102.99 Aligned_cols=78 Identities=29% Similarity=0.516 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCC---CcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTG---RSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg---~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
.++|||.||+++++.++|+.+|+..|.|+++.|.+.++.. .|.|||||+|.+.++|++|++.|+ +.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999887655422 256999999999999999999986 889999999999
Q ss_pred cc
Q 043732 89 AH 90 (249)
Q Consensus 89 a~ 90 (249)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 97
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.7e-09 Score=97.33 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~~ 92 (249)
..|||| .+++|+.|.++|+.+|.|++|+|.+|. | +-|||||.|.++++|++||+.+| ..|.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 7 99999999999999999999987 5599999999999644
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=104.28 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
+...++|+|.|||+..+..+++++|..||.|.+|+|+.....+.++|||||+|-++++|.+|+..+. .-+.||+|.+.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 3446799999999999999999999999999999998776667789999999999999999999985 559999999999
Q ss_pred ccCC
Q 043732 89 AHLG 92 (249)
Q Consensus 89 a~~~ 92 (249)
|+..
T Consensus 690 A~~d 693 (725)
T KOG0110|consen 690 AKSD 693 (725)
T ss_pred hccc
Confidence 9644
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.87 E-value=1.6e-09 Score=92.87 Aligned_cols=83 Identities=39% Similarity=0.629 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 86 (249)
+.+.+..+||+|.|..+++++.|-+.|.+|-.....++++|+.|+++|||+||.|.+.+++.+|+++++ +-++.+.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 456778899999999999999999999999999999999999999999999999999999999999985 6689998887
Q ss_pred EEcc
Q 043732 87 NLAH 90 (249)
Q Consensus 87 ~~a~ 90 (249)
+.+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 7553
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.1e-08 Score=88.63 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.+....+|+|.||+..++++||+++|+.||.++.+.|..|+ .|++.|.|-|.|+..++|++|++.++ ..++|+.|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 55666899999999999999999999999999888888887 49999999999999999999999964 55999999999
Q ss_pred EccCC
Q 043732 88 LAHLG 92 (249)
Q Consensus 88 ~a~~~ 92 (249)
+....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 88543
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.84 E-value=6.8e-09 Score=89.66 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
..+.+.+.|||+|+...++.++++..|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++++...+..|.++.|.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 46788899999999999999999999999999999999999999999999999999999999999955688999999999
Q ss_pred EccCC
Q 043732 88 LAHLG 92 (249)
Q Consensus 88 ~a~~~ 92 (249)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88443
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.77 E-value=3.2e-08 Score=91.65 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
+..+..-|-+.+|||++|++||.+||+.|+ |+++++.++ +|+..|-|||+|.++|++++||++....+..|-|+|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 556677788899999999999999999995 777666544 69999999999999999999999988888889999988
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
+..
T Consensus 83 ~~~ 85 (510)
T KOG4211|consen 83 AGG 85 (510)
T ss_pred cCC
Confidence 743
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=80.03 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEE-ecCCCCCcccEEEEEEcCHHHHHHHHhCCCCe-eC---CeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVI-THKNTGRSKGYGFVTFRDPGSALRACANPSPM-IG---GRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~-~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~-i~---Gr~ 83 (249)
+....++|||.+||.++...||..+|..|-.-+.+.|. .++.....+-+|||+|.+..+|..|+..++.+ +| +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34558999999999999999999999988666655443 33332334689999999999999999998754 54 778
Q ss_pred eEEEEccCCCCCCCCCC
Q 043732 84 ANCNLAHLGRTRPDLPS 100 (249)
Q Consensus 84 l~V~~a~~~~~~~~~~~ 100 (249)
|+|++|+...++++++.
T Consensus 110 LhiElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKG 126 (284)
T ss_pred eEeeehhcCcccccCCC
Confidence 99999976555444443
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=6.9e-09 Score=87.32 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
.....++|||+||...++||.|.++|-+-|.|.+|.|..+++ ++.| |+||.|+++....-|++.++ ..+.++.|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345668999999999999999999999999999999988876 6666 99999999999999999976 44888887777
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
+-
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 65
No 83
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.64 E-value=3.6e-06 Score=75.43 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFG--DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
...-.+|||||-|++|++||.+.+...| .|.++++..++.+|.+||||+|...+..+.++.++.+ .++|.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3345689999999999999998887666 5778899999999999999999999999999999988 477888754443
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.62 E-value=1.2e-07 Score=84.56 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeC
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDIL--------EAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIG 80 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~ 80 (249)
....+.|||.|||.++|.+++.++|++||.|. .|+|.++.. |+.||=|.++|-..++++-||+.|. ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456799999999999999999999999885 478888876 9999999999999999999999985 6799
Q ss_pred CeEeEEEEcc
Q 043732 81 GRKANCNLAH 90 (249)
Q Consensus 81 Gr~l~V~~a~ 90 (249)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999995
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3.4e-08 Score=92.67 Aligned_cols=74 Identities=31% Similarity=0.384 Sum_probs=65.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
.+.+...++|+|-|||..+++++|+++|+.||+|++|+. |-..+|.+||+|-|..+|++|+++++ .+|.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455778899999999999999999999999999998655 34557899999999999999999985 679898887
No 86
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=7.3e-08 Score=81.89 Aligned_cols=69 Identities=25% Similarity=0.542 Sum_probs=62.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
.+|||++|++.+.+++|++||..||.|.+|.+. .||+||+|.+..+|+.||..++ ++|.+.++.|.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 479999999999999999999999999998774 4699999999999999999974 77888888888885
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.35 E-value=3.5e-06 Score=63.18 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=64.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee----CCeEeE
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQF--GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI----GGRKAN 85 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i----~Gr~l~ 85 (249)
.+||.|+|||...+.++|.+++... |+.-.+.++.|..++.+.|||||.|.+.+.|.+-.+.. +..+ ..|.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999999543 56667788899889999999999999999999888874 4322 366778
Q ss_pred EEEcc
Q 043732 86 CNLAH 90 (249)
Q Consensus 86 V~~a~ 90 (249)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 88884
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.34 E-value=8.9e-07 Score=85.33 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecC---CCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEe
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHK---NTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l 84 (249)
.|...++|||+||+..++|+.|...|..||.|.+|+|+.-+ ...+.+-|+||.|-+..+|++|++.++ ..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 36778999999999999999999999999999999998654 334567899999999999999999985 66889999
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
++-|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999994
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.31 E-value=1.7e-06 Score=80.40 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILE-AVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
.....|-+++||+.|+|+||.+||+-.-.+.. |.++.|+. +++.|-|||+|++.|.|++||......|+-|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678899999999999999999997754444 44555654 78999999999999999999999888888888888877
Q ss_pred c
Q 043732 90 H 90 (249)
Q Consensus 90 ~ 90 (249)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.27 E-value=8.6e-07 Score=79.57 Aligned_cols=85 Identities=27% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDIL--------EAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
.......+|||-+|++.+++++|.++|.+|+.|. .|.|-+|++|++.||-|.|+|+|...|+.||+.. .+.
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4467788999999999999999999999999885 3677889999999999999999999999999986 578
Q ss_pred eCCeEeEEEEccCC
Q 043732 79 IGGRKANCNLAHLG 92 (249)
Q Consensus 79 i~Gr~l~V~~a~~~ 92 (249)
+.+..|+|.+|..+
T Consensus 141 f~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 141 FCGNTIKVSLAERR 154 (351)
T ss_pred ccCCCchhhhhhhc
Confidence 99999999999544
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.2e-06 Score=82.77 Aligned_cols=87 Identities=28% Similarity=0.503 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCe-eCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPM-IGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~-i~Gr~l~V~ 87 (249)
.....++|||++|+..++++.++++.+.||.+....++.|..+|.+|||+|.+|.+......||..++.+ +.+++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3455789999999999999999999999999999999999999999999999999999999999998755 888999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
.|......
T Consensus 365 ~A~~g~~~ 372 (500)
T KOG0120|consen 365 RAIVGASN 372 (500)
T ss_pred hhhccchh
Confidence 99765543
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.24 E-value=2.5e-07 Score=86.78 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
.++.+.++||+--|+..+++.+|.+||+.+|+|.+|.++.|+.++++||.++|+|.|.+....||...+..+.|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 45677889999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
.....+.+
T Consensus 254 ~sEaeknr 261 (549)
T KOG0147|consen 254 LSEAEKNR 261 (549)
T ss_pred ccHHHHHH
Confidence 87644433
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.00 E-value=5.2e-06 Score=73.99 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=71.9
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 12 ANRKLF-VGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
...++| |++|+.++++++|+.+|..+|.|..+++..++.++..+||++|+|.+.+.+.+++......+.++.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345566 9999999999999999999999999999999999999999999999999999999884466899999988875
Q ss_pred CC
Q 043732 91 LG 92 (249)
Q Consensus 91 ~~ 92 (249)
..
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 43
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.97 E-value=2.4e-05 Score=56.69 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=46.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 14 RKLFVGGLAWETNSDT----LRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
..|+|.|||.+.+... |+++++.|| +|.+| . .+-|.|.|.+.|.|.+|.+.+. ..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988764 567777886 55444 1 3579999999999999999975 55899999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8843
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=1.7e-05 Score=60.45 Aligned_cols=70 Identities=23% Similarity=0.354 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC------CCeeCCeEeEEE
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP------SPMIGGRKANCN 87 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~------~~~i~Gr~l~V~ 87 (249)
+.|.|.++...++.++|+++|+.||.|..|.+.+.. --|+|.|.+.++|++|++.+ ...|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999886543 26999999999999999864 134667666665
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=1.6e-05 Score=67.77 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
..+.+.|+|.+|...+.+.+|++.|+.+|.+....+ .++++||+|++.+++++||+.+ +..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 567789999999999999999999999999855444 2568999999999999999997 5779999999955
Q ss_pred cc
Q 043732 89 AH 90 (249)
Q Consensus 89 a~ 90 (249)
..
T Consensus 168 ~~ 169 (216)
T KOG0106|consen 168 NS 169 (216)
T ss_pred cC
Confidence 53
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.82 E-value=9.5e-05 Score=67.67 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=66.6
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 13 NRKLFVGGLA-WETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 13 ~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
.+.|.|.||. +.+|.+.|..+|+.||+|.+|+|+.++. --|+|.+.|...|.-|++.+ ++.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6788899996 5679999999999999999999998763 46999999999999999997 578999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 443
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.82 E-value=1.8e-05 Score=67.16 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS 76 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~ 76 (249)
...+...+|||.||..+|+|++|+.+|+.|-....++|.. ...-..+||+|++.+.|..|+..+.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhh
Confidence 3456678999999999999999999999998776666632 2234689999999999999988764
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=2.6e-05 Score=71.59 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEec---CCCCC----------cccEEEEEEcCHHHHHHHHhCC
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITH---KNTGR----------SKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~----------~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
++...++|.+-|||.+-.-+.|.++|+.+|.|+.|+|..- ....+ .+-+|+|+|++.+.|.||.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4468899999999999999999999999999999999765 22111 2678999999999999999998
Q ss_pred CCe
Q 043732 76 SPM 78 (249)
Q Consensus 76 ~~~ 78 (249)
+.+
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 654
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.73 E-value=9.1e-05 Score=49.32 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al 72 (249)
+.|-|.+.+.+..++ +.++|..||+|+++.+. ..+-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 567888888776654 55588899999998885 22458999999999999986
No 101
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00031 Score=52.99 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE-EEecC------CCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCe
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAV-VITHK------NTGRSKGYGFVTFRDPGSALRACANPSPMIGGR 82 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~d~------~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr 82 (249)
..+.+.|.|=+.|.. ....|.+.|++||+|++.. +.++. ..-.....-.|+|+++.+|.+||.+++..|+|.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 345567888889888 5677888999999998774 11110 001234578899999999999999999999875
Q ss_pred -EeEEEEcc
Q 043732 83 -KANCNLAH 90 (249)
Q Consensus 83 -~l~V~~a~ 90 (249)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55577663
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00024 Score=66.70 Aligned_cols=67 Identities=28% Similarity=0.411 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFE-QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
.-...+|||||+||.-++.++|..+|+ .||.|+-+.|-.|++-+-.||-|=|+|++..+-.+||+.-
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 345678999999999999999999998 8999999999999777889999999999999999999873
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00014 Score=65.22 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHHhhCCCEEEEEEEecCCC-CCcccEE--EEEEcCHHHHHHHHhCC-CCeeCC
Q 043732 12 ANRKLFVGGLAWETNSDT----L--RTYFEQFGDILEAVVITHKNT-GRSKGYG--FVTFRDPGSALRACANP-SPMIGG 81 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~d~~t-g~~kG~g--FV~F~~~e~A~~Al~~~-~~~i~G 81 (249)
...-|||-+|+..+..|+ | .++|.+||+|.+|.|-+...+ ....+.+ +|+|.+.|+|.+||.+. +..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999998886665 2 679999999998877543211 1112333 99999999999999996 577999
Q ss_pred eEeEEEEcc
Q 043732 82 RKANCNLAH 90 (249)
Q Consensus 82 r~l~V~~a~ 90 (249)
|-|++.+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998874
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.58 E-value=0.0002 Score=69.42 Aligned_cols=77 Identities=17% Similarity=0.309 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
..+.|-|.|+|++++-|||.+||..|-.+-.-.+++-.+.|+..|-|.|.|++.|+|.+|...++ ..|..|.|++.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34578899999999999999999999766544444444569999999999999999999999975 669999888875
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00022 Score=66.96 Aligned_cols=65 Identities=31% Similarity=0.570 Sum_probs=49.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCC---CCccc---EEEEEEcCHHHHHHHHhC
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNT---GRSKG---YGFVTFRDPGSALRACAN 74 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG---~gFV~F~~~e~A~~Al~~ 74 (249)
...-+++||||+||++++|++|.+.|..||.+ .|.+....+. --.+| |.|+.|+++..+.+.|..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 34557899999999999999999999999986 4566532111 12467 999999999887765544
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.52 E-value=0.00044 Score=58.79 Aligned_cols=75 Identities=27% Similarity=0.325 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeC-CeEeEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIG-GRKANCN 87 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~-Gr~l~V~ 87 (249)
......+|+.|||.+++.+.|..+|++|....+|+++..+ ++.+||+|.++..+..|...+. ..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5677889999999999999999999999999999998654 5789999999988888887764 3343 6667776
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
++
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 66
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.51 E-value=6.8e-05 Score=68.62 Aligned_cols=74 Identities=19% Similarity=0.386 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC---CCeeCCeEeEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP---SPMIGGRKANCN 87 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~---~~~i~Gr~l~V~ 87 (249)
..++.|.++||||+++|+||.+++..||+|+.+.+++.++ -+|++|.|++.|..-+..- ...+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678899999999999999999999999999998876543 6999999999887744432 245888999988
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
++.
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 874
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=0.0019 Score=58.97 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE-EE--EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDI-LE--AVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~--v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
.......|-+++||.+.+.|+|.+||..|-.- .. |.++.+. .|+..|-|||+|.+.|+|..|.... ++....|-|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 34446678899999999999999999988643 22 5666664 4899999999999999999888875 455678888
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
+|--++
T Consensus 355 Evfp~S 360 (508)
T KOG1365|consen 355 EVFPCS 360 (508)
T ss_pred EEeecc
Confidence 888774
No 109
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.0015 Score=54.28 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=62.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-Ce--eCCe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PM--IGGR 82 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~--i~Gr 82 (249)
.+.......+|.|.+||.+-++.||+++..+-|+|+...+.+| |.+.|+|...|+.+-||+.+. .. -.|.
T Consensus 108 gppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe 180 (241)
T KOG0105|consen 108 GPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGE 180 (241)
T ss_pred CCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCc
Confidence 3455667788999999999999999999999999999999877 479999999999999999863 22 3455
Q ss_pred EeEEEEc
Q 043732 83 KANCNLA 89 (249)
Q Consensus 83 ~l~V~~a 89 (249)
...+.+-
T Consensus 181 ~~yirv~ 187 (241)
T KOG0105|consen 181 TAYIRVR 187 (241)
T ss_pred EeeEEec
Confidence 5555444
No 110
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.14 E-value=0.0029 Score=43.43 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQF---GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
....+|+|.++. +.+.++|+.+|..| ....+|+++-|.. |=|.|.+.+.|.+||..|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 345689999985 57788999999988 1345889998863 889999999999999764
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.10 E-value=0.00038 Score=63.37 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhh---C-CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQ---F-GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~---~-G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
+.-.|-+++||.++++.++.+||.. . |..+.|.+++.. .|+..|-|||.|..+++|+.||.+....|+-|-|++
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445667899999999999999952 2 244556555554 488999999999999999999987655454444433
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.09 E-value=0.038 Score=50.56 Aligned_cols=85 Identities=26% Similarity=0.298 Sum_probs=63.8
Q ss_pred CCCCCCCCCcEEEEcCCC--CCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-Cee-C
Q 043732 5 YGAEADSANRKLFVGGLA--WETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMI-G 80 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i-~ 80 (249)
++.+.....+.|.+.=|. ..+|.+-|..+....|+|.+|.|++. ++. -|.|+|++.+.|++|.+.|| ..| .
T Consensus 112 ~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 112 PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccc
Confidence 344445555566655443 56899999999999999999999865 232 48999999999999999986 444 3
Q ss_pred C-eEeEEEEccCCCC
Q 043732 81 G-RKANCNLAHLGRT 94 (249)
Q Consensus 81 G-r~l~V~~a~~~~~ 94 (249)
| ..|+|++|++.+-
T Consensus 187 GCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTRL 201 (494)
T ss_pred cceeEEEEecCccee
Confidence 4 4789999976553
No 113
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0027 Score=60.48 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=60.8
Q ss_pred CCCCcEEEEcCCCCCCCH------HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeC-C
Q 043732 10 DSANRKLFVGGLAWETNS------DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIG-G 81 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te------~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~-G 81 (249)
+.-...|+|.|+|---.. .-|.++|+++|+|+.+.++.+.. |..+||.|++|.+..+|++|++.++ +.|+ .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 344567889998853222 34677899999999999998877 4499999999999999999999974 5554 5
Q ss_pred eEeEEEEc
Q 043732 82 RKANCNLA 89 (249)
Q Consensus 82 r~l~V~~a 89 (249)
+++.|..-
T Consensus 134 Htf~v~~f 141 (698)
T KOG2314|consen 134 HTFFVRLF 141 (698)
T ss_pred ceEEeehh
Confidence 66676654
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.03 E-value=0.003 Score=50.61 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=52.3
Q ss_pred CCCcEEEEcCCC-----C-CCCH---HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCC
Q 043732 11 SANRKLFVGGLA-----W-ETNS---DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGG 81 (249)
Q Consensus 11 ~~~~~lfVgnLp-----~-~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~G 81 (249)
+...+|.|.=+. . ..++ .+|.+.|+.||+++-|+++.+. -+|+|.+-+.|.+|+...+..|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECC
Confidence 344566665444 1 2232 2677888999999888887553 699999999999999999999999
Q ss_pred eEeEEEEccCC
Q 043732 82 RKANCNLAHLG 92 (249)
Q Consensus 82 r~l~V~~a~~~ 92 (249)
+.|+|++..+.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999998643
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.01 E-value=0.00034 Score=60.54 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCC--------CCccc----EEEEEEcCHHHHHHHHhCCC-Ce
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNT--------GRSKG----YGFVTFRDPGSALRACANPS-PM 78 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t--------g~~kG----~gFV~F~~~e~A~~Al~~~~-~~ 78 (249)
..-.||+++||...+...|+++|+.||+|=+|.+-....+ +.++. -|+|+|.+...|+++.+.|+ ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999988765544 22222 27899999999999988875 56
Q ss_pred eCCeE
Q 043732 79 IGGRK 83 (249)
Q Consensus 79 i~Gr~ 83 (249)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87764
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.00 E-value=0.0036 Score=56.42 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=60.4
Q ss_pred CCCCCcEEEEcCCC----CCCC-------HHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C
Q 043732 9 ADSANRKLFVGGLA----WETN-------SDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S 76 (249)
Q Consensus 9 ~~~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~ 76 (249)
.....++|.|.||= .+.+ +++|++-.++||.|.+|.|. | ....|.+-|.|.+.++|..||+.| +
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 34567889999871 2233 34566667899999998775 2 235789999999999999999998 5
Q ss_pred CeeCCeEeEEEEcc
Q 043732 77 PMIGGRKANCNLAH 90 (249)
Q Consensus 77 ~~i~Gr~l~V~~a~ 90 (249)
..++||.|..++-.
T Consensus 337 R~fdgRql~A~i~D 350 (382)
T KOG1548|consen 337 RWFDGRQLTASIWD 350 (382)
T ss_pred eeecceEEEEEEeC
Confidence 67999999988763
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.98 E-value=0.0098 Score=54.26 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAWE-TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
....+.+.+.|-+|... +.-+.|-.+|-.||.|++|++++.+ .|-|.|+..|..+.++||..|+ ..+-|.+|+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34566788999999865 4678899999999999999999876 4679999999999999999975 557899999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|..++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9988543
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.85 E-value=0.00024 Score=70.61 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=80.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 86 (249)
.+....++||++||+..+++.+|+..|..+|.|.+|.|-+-+. +...-|+||.|.+.+.+.+|+..+. ..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 4566789999999999999999999999999999998865532 4445689999999999999988863 4454445555
Q ss_pred EEccCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC
Q 043732 87 NLAHLGRTRPDLPSFGHPRPS----SAAPLFGSPGHHQPVSYNYQS 128 (249)
Q Consensus 87 ~~a~~~~~~~~~~~~g~~~~~----~~~~~~g~~g~~~~~~~~~~~ 128 (249)
.+...+..-..+.+.+...+- -....|+.+|.+.-+-+-.++
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq 491 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ 491 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC
Confidence 555433333333343333321 123446666666554443333
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0035 Score=59.68 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=49.6
Q ss_pred HHHHHHhhCCCEEEEEEEecC---CCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 29 TLRTYFEQFGDILEAVVITHK---NTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 29 ~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
+++.-+.+||.|.+|.+.++- +..-..|..||+|.+.+++++|.++| +..+.+|.+.+.+-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 344455689999999998772 22335678999999999999999998 567999999888774
No 120
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.77 E-value=0.0035 Score=45.48 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS 76 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~ 76 (249)
.+...||-=.+|.++...||.++|+.||.| .|.++.|. -|||.+.+++.|+.++..+.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 333344444499999999999999999997 57777664 59999999999998877643
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.001 Score=65.82 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEccC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAHL 91 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~~ 91 (249)
..+|||.|+|...|+++|+.+++.+|.+.+++++..+. |+.||.+||.|.++.++.+++.... ..+.-+.++|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999999999999999999999999999887775 9999999999999999999998864 336666677777654
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.55 E-value=0.00085 Score=58.11 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=48.8
Q ss_pred HHHHHHh-hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccCC
Q 043732 29 TLRTYFE-QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHLG 92 (249)
Q Consensus 29 ~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~~ 92 (249)
+|...|+ +||+|++++|-.+. .-.-+|-.+|.|..+|+|++|++.+ +..+.|++|.+.+....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3333444 99999998775443 2345788999999999999999997 57799999999988533
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.36 E-value=0.00017 Score=71.23 Aligned_cols=71 Identities=28% Similarity=0.350 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCC
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGG 81 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~G 81 (249)
.+.+++||.||+..+.+++|+..|..++.|..+.+...+++++.||.|+|+|.+.+++.+||......+-|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 44578999999999999999999999999888877666677899999999999999999999987544433
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.36 E-value=0.0063 Score=55.72 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecC---CCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHK---NTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
..|-|.||...++.+.+..+|...|+|.++.|+-.. .-....-.|||.|.|...+..|-...+.++-++.|.|.-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 389999999999999999999999999999887532 1123456899999999998888777677766777666644
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.22 E-value=0.0021 Score=59.33 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=61.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC--CeeCCeEeEEEEccC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS--PMIGGRKANCNLAHL 91 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~--~~i~Gr~l~V~~a~~ 91 (249)
.++|++||.+.++.+||+.+|...-.-.+-.++. ..||+||...+...|.+|++.++ .++.|+++.|...-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4789999999999999999996441101111111 24799999999999999999974 459999999998876
Q ss_pred CCCCCCCCC
Q 043732 92 GRTRPDLPS 100 (249)
Q Consensus 92 ~~~~~~~~~ 100 (249)
++.+.++.+
T Consensus 76 kkqrsrk~Q 84 (584)
T KOG2193|consen 76 KKQRSRKIQ 84 (584)
T ss_pred HHHHhhhhh
Confidence 666555543
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.0078 Score=52.29 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=54.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
..|+|.||...++.|.|++.|+.||.|....+..|.. ++..+-++|.|..+-.+.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHh
Confidence 6799999999999999999999999999877777753 788888999999999999988875
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.89 E-value=0.009 Score=58.35 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=62.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILE-AVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
.......|||..||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||+|..++++.+|+... .+-++-|.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3445678999999999999999999998878877 5555544 5788999999999988888777654 34466667777
Q ss_pred EEc
Q 043732 87 NLA 89 (249)
Q Consensus 87 ~~a 89 (249)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 643
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.77 E-value=0.032 Score=49.46 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCCEEEEEEEecCCCCCcc-cEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 27 SDTLRTYFEQFGDILEAVVITHKNTGRSK-GYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 27 e~~L~~~F~~~G~I~~v~i~~d~~tg~~k-G~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
++++++-.++||.|..|.|..++..-... ---||+|+..++|.+|+..++ ..|+||.++..+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678888999999999888775332222 237999999999999999975 66999988766553
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.052 Score=48.35 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeE-eEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRK-ANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~-l~V 86 (249)
+.|.....|-|-+++..-. .-|..+|++||+|++.... ..-.+-.|.|.++.+|+|||...+.+|+|.. |-|
T Consensus 192 ~~d~~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGV 264 (350)
T KOG4285|consen 192 EADAADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGV 264 (350)
T ss_pred ccccccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEee
Confidence 3443355666667776543 4567789999999876543 2234889999999999999999999888764 556
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
+-+..+
T Consensus 265 kpCtDk 270 (350)
T KOG4285|consen 265 KPCTDK 270 (350)
T ss_pred eecCCH
Confidence 655443
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.43 E-value=0.065 Score=42.88 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCCCCcEEEEcCCCCCC-CHHH---HHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 9 ADSANRKLFVGGLAWET-NSDT---LRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~-te~~---L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
.+..-.+|.|.=|..++ ..|| +...++.||.|.+|.+. | +--|.|+|+|..+|=+|+.+.....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 45667788888776665 2244 45566899999999774 3 335999999999999999998777888999
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
.|+|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 999874
No 131
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.20 E-value=0.016 Score=55.78 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=60.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCe----eCCeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFE-QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPM----IGGRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~----i~Gr~ 83 (249)
....++.|+|.||-.-.|.-.|++++. .+|.|++. || | +-|..|||.|.+.++|-..+..|+.+ -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455678999999999999999999998 56666665 43 2 23668999999999999888887432 47888
Q ss_pred eEEEEcc
Q 043732 84 ANCNLAH 90 (249)
Q Consensus 84 l~V~~a~ 90 (249)
|.+.+..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888885
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.16 E-value=0.017 Score=51.66 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
...+++|++++.+.+.+.++..++...|.+..+.+........+++++.|.|...+.+..||.... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 468899999999999999999999999988888777767778899999999999999999999865 5777777777766
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5444
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.92 E-value=0.008 Score=54.06 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCCCCHHHH---HHHHhhCCCEEEEEEEecCC--CCC-cccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 13 NRKLFVGGLAWETNSDTL---RTYFEQFGDILEAVVITHKN--TGR-SKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L---~~~F~~~G~I~~v~i~~d~~--tg~-~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
.+-+||-+|+....++++ .+.|.+||.|.+|.+.++.. .+. .-.-++|+|..+|+|.+||...+ ..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788889877755544 45888999999998887652 111 12238999999999999999964 557888877
Q ss_pred EEEccC
Q 043732 86 CNLAHL 91 (249)
Q Consensus 86 V~~a~~ 91 (249)
+.+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 777643
No 134
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.67 E-value=0.026 Score=52.96 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=60.1
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWET-NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
..+.+.|=+.-.+... +-++|...|.+||+|..|.|-.. --.|.|+|.+..+|-+|-......|++|.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 3444555555556555 56889999999999999887443 2358999999999988888888899999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
-..
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 864
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.45 E-value=0.07 Score=53.63 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeC--CeEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIG--GRKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~--Gr~l~ 85 (249)
.....+.+||++|..++....|...|..||.|..|.+-+ ..-|++|.+++.+.++.|++.+. .-|+ .++|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 456678999999999999999999999999999887733 24599999999999999999974 4454 46799
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|.++...-.
T Consensus 525 vdla~~~~~ 533 (975)
T KOG0112|consen 525 VDLASPPGA 533 (975)
T ss_pred cccccCCCC
Confidence 999975443
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.95 E-value=0.055 Score=52.67 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
......+|||+||...+.++-++.++..||-|.+++... |||.+|.......+|+..+. ..+++..+.++
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999988765542 99999999999999999875 45888888776
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
.-
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 64
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.34 E-value=0.51 Score=33.24 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=37.5
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhCCC-----EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 15 KLFVG-GLAWETNSDTLRTYFEQFGD-----ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 15 ~lfVg-nLp~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
++||. +--+.++..+|..++..-+. |-+|+|..+ |.||+-.. +.|+++++.++ ..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 33467888999999976654 445666432 79998876 47888888864 67999999998
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.72 E-value=0.77 Score=38.40 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=42.8
Q ss_pred CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeEeEEEEccC
Q 043732 26 NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRKANCNLAHL 91 (249)
Q Consensus 26 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~l~V~~a~~ 91 (249)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...+. ..+.|+.|+|-+++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999988877644 2348899999999999999965 459999999999853
No 139
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.01 E-value=0.27 Score=40.80 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-CCCE---EEEEEEecC-CCC-CcccEEEEEEcCHHHHHHHHhCC-CCe-eCC
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQ-FGDI---LEAVVITHK-NTG-RSKGYGFVTFRDPGSALRACANP-SPM-IGG 81 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~d~-~tg-~~kG~gFV~F~~~e~A~~Al~~~-~~~-i~G 81 (249)
.....+|.|++||..++|+++.+.++. +++. ..+.-.... ... ..-.-|+|.|.+.+++...+... ++. ++.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999887765 5555 233211221 111 12345999999999988888875 444 332
Q ss_pred ----eEeEEEEccC
Q 043732 82 ----RKANCNLAHL 91 (249)
Q Consensus 82 ----r~l~V~~a~~ 91 (249)
.+..|++|--
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 2456666643
No 140
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.48 E-value=3.4 Score=31.61 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
...+.+...+..++.++|..+.+.+- .|..++|++|. ..++--+.++|.+.++|++-.+.. ++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 33444455566677778876666654 56678888874 335667999999999999998884 443
No 141
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.02 E-value=1.6 Score=38.94 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEEecCCCCCcccEEEEEEcCH
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDI-LEAVVITHKNTGRSKGYGFVTFRDP 65 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~gFV~F~~~ 65 (249)
+.....-|+|+||+.++.-.||+..+.+.+.+ .++.+. -.+|-||+.|-+.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 33445669999999999999999999887654 344442 2356799999764
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.86 E-value=0.26 Score=49.47 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe--eCCeEeEEEEcc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM--IGGRKANCNLAH 90 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~--i~Gr~l~V~~a~ 90 (249)
.+.++-|.+-..+...|..+|++||+|.++..++|-+ .+.|+|.+.|.|-.|+..+ +++ ..|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3445566777888899999999999999999888854 6999999999999999987 454 567788888884
No 143
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.25 E-value=2.7 Score=39.11 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGD-ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRK 83 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~ 83 (249)
-.+.|=|-++|.....+||...|+.|+. -.+|+|+-|. ++|..|.+...|..||.....++.=|.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeee
Confidence 4577889999999999999999999864 3577888776 599999999999999987444443333
No 144
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.19 E-value=5.8 Score=27.49 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 23 WETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 23 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
..++-++|+..+.+|.- . +|..|+ || =||.|.+.++|+++.+..+ ..+-..+|.
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~--~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-D--RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCccHHHHHHHHhcCCc-c--eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 45788999999999963 2 333443 33 4799999999999999854 445555444
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.56 E-value=2.4 Score=40.77 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.6
Q ss_pred CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CC---eeCCe-EeEEEEcc
Q 043732 38 GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SP---MIGGR-KANCNLAH 90 (249)
Q Consensus 38 G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~---~i~Gr-~l~V~~a~ 90 (249)
|.-..+.++.|-.+....|||||.|.+.+++.++.++- ++ .|+++ .+.+.+|.
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 34344566667667788999999999999999888873 32 25544 45777773
No 146
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.93 E-value=5 Score=27.91 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 28 DTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 28 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
++|++-|...| .|.+|.-++.+.+.+.--.-||+++...+.++ .++ +.|++.+|+|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecC
Confidence 56777777776 67788888777667777788899887655222 233 4578888888866
No 147
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.81 E-value=5.8 Score=35.48 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecC-------CCCCcccEEEEEEcCHHHHHHH----HhCC--
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHK-------NTGRSKGYGFVTFRDPGSALRA----CANP-- 75 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-------~tg~~kG~gFV~F~~~e~A~~A----l~~~-- 75 (249)
+.-..|.|.+.||..+++-.++.+.|.+||.|++|.++.+. +..+......+.|-+++.|... +..+
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44456778899999999999999999999999999998765 1223456788999998887544 2222
Q ss_pred -CCeeCCeEeEEEEccC
Q 043732 76 -SPMIGGRKANCNLAHL 91 (249)
Q Consensus 76 -~~~i~Gr~l~V~~a~~ 91 (249)
...+....|.+++...
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 3458888888888764
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.49 E-value=8.1 Score=27.01 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 28 DTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 28 ~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
++|++-|...| +++.|..++.++++..-..-||+.....+-.. .++ +.|+++++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46777888777 67888888887777777778888876543333 222 4588889888865
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=70.34 E-value=0.52 Score=43.58 Aligned_cols=63 Identities=17% Similarity=0.048 Sum_probs=51.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCee
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMI 79 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i 79 (249)
.++|+|.+|...+...++-++|..+|+|....+-. +...-+|-|+|........|+..++.++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 47899999999999999999999999987666542 3335578899998888888988876544
No 150
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.80 E-value=20 Score=26.07 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=39.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 16 LFVGGLAWETNSDTLRTYFEQ-FG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 16 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
.|+=.++.+.+..+|++.++. |+ +|.+|..+.-+. + .-=|+|++...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 444456888999999999986 44 466776654432 2 224999999988888776554
No 151
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=69.14 E-value=12 Score=25.63 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=14.8
Q ss_pred HHHHHHHhhCCCEEEEEE
Q 043732 28 DTLRTYFEQFGDILEAVV 45 (249)
Q Consensus 28 ~~L~~~F~~~G~I~~v~i 45 (249)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999965544
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=67.03 E-value=1.1 Score=38.56 Aligned_cols=66 Identities=29% Similarity=0.400 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEcC----CCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 8 EADSANRKLFVGG----LAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 8 ~~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
+++....+++.|+ |...++++.+.+.|+.-+.|+.+++.++.+ ++.+.++|+++......-.++..
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 4566678889998 889999999999999999999999998876 88899999988765555555443
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.03 E-value=12 Score=28.85 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHh
Q 043732 25 TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD-PGSALRACA 73 (249)
Q Consensus 25 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~-~e~A~~Al~ 73 (249)
.+.++|++.|+.|..+ +++.+.++ ..+.|++.|+|.+ -.--+.|++
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999776 46666665 3678999999975 333444443
No 154
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.88 E-value=28 Score=33.09 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQF-GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS 76 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~ 76 (249)
...+.|.|=.+|-.++..||..|...+ -.|.+++|++|.. -.+=..+|+|.+.++|....+..|
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC
Confidence 337888898999999999999988644 5688999999742 234458899999999999998853
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=59.34 E-value=19 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHH
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYF 34 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F 34 (249)
.....++|-|.|||...+||+|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 35678899999999999999999654
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.05 E-value=18 Score=29.98 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=44.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~A 71 (249)
........+++.+++..++++++...|..+|.+..+.+...........+.++.+.....+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 4456678899999999999999999999999997776665543333344444444444333333
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.93 E-value=22 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.5
Q ss_pred EEEEEcCHHHHHHHHhCCCC--eeCCeEeEEEEc
Q 043732 58 GFVTFRDPGSALRACANPSP--MIGGRKANCNLA 89 (249)
Q Consensus 58 gFV~F~~~e~A~~Al~~~~~--~i~Gr~l~V~~a 89 (249)
|.|+|.+++-|++.|+.-.+ .+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 57999999999999998643 377777777655
No 158
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=51.94 E-value=6.1 Score=36.83 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=49.5
Q ss_pred CcEEEEcCCCCCCCHH--------HHHHHHhh--CCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHh
Q 043732 13 NRKLFVGGLAWETNSD--------TLRTYFEQ--FGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~ 73 (249)
.+.+|+.++..+...+ ++...|.. .+.+..+..-+|.....++|-.|++|+..+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777665544 89999988 6777788888887677889999999999999999994
No 159
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.60 E-value=87 Score=30.82 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHHhhC----CCEEEEEEEecC----------CCCC---------------------
Q 043732 10 DSANRKLFVGGLAWET-NSDTLRTYFEQF----GDILEAVVITHK----------NTGR--------------------- 53 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~----G~I~~v~i~~d~----------~tg~--------------------- 53 (249)
....++|-|-||.|+. ..++|.-+|+.| |.|++|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 5667899999999874 778999999866 689999875321 0111
Q ss_pred ---------------c-ccEEEEEEcCHHHHHHHHhCC-CCeeC--CeEeEEEEc
Q 043732 54 ---------------S-KGYGFVTFRDPGSALRACANP-SPMIG--GRKANCNLA 89 (249)
Q Consensus 54 ---------------~-kG~gFV~F~~~e~A~~Al~~~-~~~i~--Gr~l~V~~a 89 (249)
. -=||.|+|.+.+.|.+..+.. +.++. +..|.+++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 126899999999999998885 55553 445555554
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.91 E-value=17 Score=32.45 Aligned_cols=32 Identities=25% Similarity=0.070 Sum_probs=22.8
Q ss_pred EEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 58 GFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 58 gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
|||+|++.++|+.|++.... .+.+.++|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 79999999999999986321 123455777663
No 161
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=46.55 E-value=4.7 Score=26.88 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=21.1
Q ss_pred cccEEEEEEcC-HHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 54 SKGYGFVTFRD-PGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 54 ~kG~gFV~F~~-~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
.+|||||.-.+ .++.--.-+.++..++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57999999987 22221122234566788888888775
No 162
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.15 E-value=84 Score=20.38 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCH----HHHHHHHhCCC
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP----GSALRACANPS 76 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~----e~A~~Al~~~~ 76 (249)
++.|.||...--...|++.+...-.|.++.+-... +-.-|+|... ++..++|+..+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46777887777788999999999889888885442 3577888744 56666666544
No 163
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=44.23 E-value=3 Score=40.30 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
..|+|||.|+..+++-++|+.+++.+--+..+.+..+..-.+.+.+++|+|+---..+.||.++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL 293 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL 293 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh
Confidence 3578999999999999999999998876666655444333345667899998655555555443
No 164
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.22 E-value=1e+02 Score=21.96 Aligned_cols=58 Identities=7% Similarity=0.109 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhC-C-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQF-G-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~-G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
+-|+-.++.+.+..+|++.++.. + +|.+|..+.-+. + .-=|||++...++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 34555678899999999999864 4 456665554432 2 224999999888887765543
No 165
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.84 E-value=25 Score=31.46 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCCC------------CCHHHHHHHHhhCCCEEEEEEE
Q 043732 11 SANRKLFVGGLAWE------------TNSDTLRTYFEQFGDILEAVVI 46 (249)
Q Consensus 11 ~~~~~lfVgnLp~~------------~te~~L~~~F~~~G~I~~v~i~ 46 (249)
....+|++.+||.. -+++.|+..|+.||+|..|.|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34567888887742 3567899999999999988775
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=42.33 E-value=56 Score=29.80 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEE----EEcCHHHHHHHHhCCCCee
Q 043732 20 GLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV----TFRDPGSALRACANPSPMI 79 (249)
Q Consensus 20 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV----~F~~~e~A~~Al~~~~~~i 79 (249)
-|--..++++|++|.++++ +..+.+.+....|+. .|| .|.+.++|++|++.|-..|
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp---WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP---WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEEEECCce---EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3344567888999888875 455656554433432 343 5789999999999986443
No 167
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=41.48 E-value=33 Score=28.69 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhh-CCCEEEEEEEecCCC-CCcccEEEEEEcCHHHHHHHHhCC
Q 043732 25 TNSDTLRTYFEQ-FGDILEAVVITHKNT-GRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 25 ~te~~L~~~F~~-~G~I~~v~i~~d~~t-g~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
.+++.|.++..- -|++..|.+-+..+. -..+|--||+|.+.+.|...++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 344444444321 167777665433221 246889999999999999887764
No 168
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.24 E-value=89 Score=25.12 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=33.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 043732 16 LFVGGLAWETNSDTLRTYFEQ-FG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72 (249)
Q Consensus 16 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al 72 (249)
.|+-.++...+..+|++.++. |+ +|.+|..+.-+. |.. =|||++...++|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHH
Confidence 344456778899999988876 43 455665544332 222 3899997766654443
No 169
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.91 E-value=25 Score=29.35 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCCCC-H----HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe-E
Q 043732 11 SANRKLFVGGLAWETN-S----DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGR-K 83 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~t-e----~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr-~ 83 (249)
.-..++++.+|..++- + ...+.+|..+-+..-..+++ +.++--|.|.+++.|.+|...+ ...+.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 3455677778776552 2 23344555554443333332 2345668899999999998886 4678888 8
Q ss_pred eEEEEccC
Q 043732 84 ANCNLAHL 91 (249)
Q Consensus 84 l~V~~a~~ 91 (249)
+++-+++.
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 88888854
No 170
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.15 E-value=63 Score=23.56 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=32.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEc
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~ 63 (249)
..-||||+++..+.|.-.+.+.+..++-. +.++.... ...||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~--neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDN--NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccC--CCCCEEEEEeC
Confidence 45699999999998887777777654433 33333322 26789998873
No 171
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.21 E-value=68 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CcccEEEEEEcCHHHHHHHHhCCCCe
Q 043732 53 RSKGYGFVTFRDPGSALRACANPSPM 78 (249)
Q Consensus 53 ~~kG~gFV~F~~~e~A~~Al~~~~~~ 78 (249)
..|||-||+=.+.+++.+||+.+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999999997654
No 172
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.13 E-value=29 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEA 43 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v 43 (249)
.+....++|+-|||..++++.|.++.+.+|-+.++
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45667899999999999999999999999855443
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.85 E-value=26 Score=21.29 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhCC
Q 043732 23 WETNSDTLRTYFEQFG 38 (249)
Q Consensus 23 ~~~te~~L~~~F~~~G 38 (249)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 174
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=36.13 E-value=72 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.2
Q ss_pred CEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 39 DILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 39 ~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
+|++|+|-.-...++-|+||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766668999999999987
No 175
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=1.9e+02 Score=23.51 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=37.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEEecCCC---------CCccc-EEEEEEcCHH
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQF---GDILEAVVITHKNT---------GRSKG-YGFVTFRDPG 66 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~d~~t---------g~~kG-~gFV~F~~~e 66 (249)
.+|++.-+...++|++.++..++= +++.+|.+-+.+++ ...+. |-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 789999999999999999998754 56677776554321 12233 7778887644
No 176
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=35.03 E-value=1.3e+02 Score=23.49 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhh-CCCEEEE----EEEecCCCCCcccEEEEEEcCHHHHHHH
Q 043732 24 ETNSDTLRTYFEQ-FGDILEA----VVITHKNTGRSKGYGFVTFRDPGSALRA 71 (249)
Q Consensus 24 ~~te~~L~~~F~~-~G~I~~v----~i~~d~~tg~~kG~gFV~F~~~e~A~~A 71 (249)
.++.+||++-+.+ |-.-.++ .+-..-.+|++.|||.| |++.|.|++.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 5678888777653 3221222 22233456788999976 7777766643
No 177
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.33 E-value=74 Score=30.67 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=43.8
Q ss_pred EEcCCCCCC---CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 17 FVGGLAWET---NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 17 fVgnLp~~~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
+||||..-. ....+.++=++||.|-.+++-.. -.|...+.+.|++|+...+..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 577775433 34566666679999997777322 378889999999999998877877764
No 178
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.04 E-value=2.1e+02 Score=20.78 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 27 SDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 27 e~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
.+.+++++++.| +++++.+.. |.---...+++.|.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHH
Confidence 356778887775 677777764 44456778889998888877644
No 179
>PRK10905 cell division protein DamX; Validated
Probab=29.35 E-value=84 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcc-cEEEEEEcCHHHHHHHHhCCCCee
Q 043732 21 LAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSK-GYGFVTFRDPGSALRACANPSPMI 79 (249)
Q Consensus 21 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-G~gFV~F~~~e~A~~Al~~~~~~i 79 (249)
|.-..+++.|++|-.+.+ +....+......|+.. -.-+=.|.+.++|++||+.|-..|
T Consensus 252 L~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 252 LSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred EEecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 334457788888888875 3433344333334321 112236899999999999986543
No 180
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=28.85 E-value=61 Score=22.29 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEE
Q 043732 25 TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFV 60 (249)
Q Consensus 25 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV 60 (249)
.-|.+|++.|-+--+|+++.|...|.-+ +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 3456788888888899999888765433 455555
No 181
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.79 E-value=1.9e+02 Score=19.76 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCEEEEEEEecCCCCC-cccEEEEEEcCHHHHHHHHhCC
Q 043732 28 DTLRTYFEQFGDILEAVVITHKNTGR-SKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 28 ~~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
++|++.++++| +...++. |. .-++.|+.+++.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 4444552 32 1467888888988888887654
No 182
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=27.84 E-value=1.6e+02 Score=22.03 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCCHHHHHHHH-hhCCCEEEEEEEecC----CCCCcccEEEEEEcCHHHHHHH
Q 043732 24 ETNSDTLRTYF-EQFGDILEAVVITHK----NTGRSKGYGFVTFRDPGSALRA 71 (249)
Q Consensus 24 ~~te~~L~~~F-~~~G~I~~v~i~~d~----~tg~~kG~gFV~F~~~e~A~~A 71 (249)
..+..+|++-+ ..++.=.+..++..- ..+++.|||.| |+|.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 55777777666 355533333333322 23456666654 6666665543
No 183
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=27.66 E-value=1.4e+02 Score=24.13 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRA 71 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~A 71 (249)
+.-..+||.|.-+..--++--+++|+.|- .|.+|.+.++....+-+...-+...+..+.++.
T Consensus 84 ~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 84 ERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 34455788887766656666689999885 577888877654344555666666655555444
No 184
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=27.01 E-value=1.1e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=20.3
Q ss_pred CEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 39 DILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 39 ~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
+|++|+|..-...|+-|++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776554458899999999987
No 185
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=25.49 E-value=1.3e+02 Score=22.47 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCH
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDP 65 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~ 65 (249)
..-||||+++..+.|.-.+.+-+.+++- ++.++... ....||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~--~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWAT--NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcC--CCCCCcEEEecCCC
Confidence 3569999999888887666666666442 23333321 23349999888653
No 186
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.47 E-value=62 Score=23.68 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQF-GDILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
..-|||++++..+.|.-.+.+-+.| ++- ++.++... ....||.|-++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEeC--CCCCCcEEEecCC
Confidence 3569999999888776555555542 221 23333322 2345788887764
No 187
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.03 E-value=1.7e+02 Score=23.66 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 043732 20 GLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS 76 (249)
Q Consensus 20 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~ 76 (249)
.|+..+.++.|.++-+-.|.|.+.+ -.| -.+.|-|.+..++||++..
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4677889999999999999887765 233 3567889999999998753
No 188
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.30 E-value=3.5e+02 Score=21.10 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=42.6
Q ss_pred cEEEEcCCCCC---CCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeC-CeEeEEEE
Q 043732 14 RKLFVGGLAWE---TNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIG-GRKANCNL 88 (249)
Q Consensus 14 ~~lfVgnLp~~---~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~-Gr~l~V~~ 88 (249)
-.|-|...... .+-+.+.+.+++-| .++++..-.+ -..|.|++.|+..+|.+.+...+. +-.|.+++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34555544222 56678888888776 3444444222 478999999998888887755543 34555555
Q ss_pred c
Q 043732 89 A 89 (249)
Q Consensus 89 a 89 (249)
+
T Consensus 108 ~ 108 (127)
T PRK10629 108 D 108 (127)
T ss_pred C
Confidence 5
No 189
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.66 E-value=3.3e+02 Score=20.64 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 29 TLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 29 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
+|.++++++| |..-.|..|.. ...-||++++.|.+...++|.+
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHhC
Confidence 6777888887 56666666642 3456999999977776666655
No 190
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.06 E-value=79 Score=18.93 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHhhCCCE
Q 043732 24 ETNSDTLRTYFEQFGDI 40 (249)
Q Consensus 24 ~~te~~L~~~F~~~G~I 40 (249)
.+++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999854
No 191
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.69 E-value=2.6e+02 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=35.3
Q ss_pred CHHHHHHHHh----hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 26 NSDTLRTYFE----QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 26 te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
+.-+|.++|. .+|-|+++.+...+. -+.+...++.|.+.+++.+++..+
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHH
Confidence 3457777774 678888887765543 334567788999999999888763
No 192
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=22.24 E-value=1.6e+02 Score=24.83 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=32.0
Q ss_pred CCHHHHHHHHhhCCC---EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC
Q 043732 25 TNSDTLRTYFEQFGD---ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG 80 (249)
Q Consensus 25 ~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~ 80 (249)
.+.+++++.....|. |++..+... |+.|+=+...-.+.++|..+.+.+ +..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 356777777776654 444444433 445553333345789999888884 76664
No 193
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=21.77 E-value=2.4e+02 Score=18.45 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=35.7
Q ss_pred EEEEcCCCCCC-CHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCC
Q 043732 15 KLFVGGLAWET-NSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSP 77 (249)
Q Consensus 15 ~lfVgnLp~~~-te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~ 77 (249)
+|.| .+++.. .-.++-++|.+.| .|.++.+.... . ++.--+.+++.+.+.++|++.+.
T Consensus 3 ri~v-~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 3 QLSV-FLENKPGRLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred EEEE-EEcCCCChHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCC
Confidence 4444 234333 3467778887665 57777664432 2 45666667787788888877654
No 194
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.01 E-value=38 Score=23.52 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFE 35 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~ 35 (249)
+-...+++||||.+|..+-++.=+.++.
T Consensus 22 ~Ls~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 22 ELSLTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HHHHcCceEEECCCChHHHHcCcchHHH
Confidence 3456789999999999887765554444
No 195
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=15 Score=34.74 Aligned_cols=76 Identities=9% Similarity=-0.127 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEcc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLAH 90 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a~ 90 (249)
.+.|+..|+..++++++.-+|+.+|-|..+.+.+.-+.+..+-.+||+-.. +++..+|..+. ..+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456778899999999999999999998877766554445566678888765 45666666653 44667777887774
No 196
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.42 E-value=1.5e+02 Score=21.80 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCHHHH---HHHHhhCCCEEEEEE--EecCCCCCcccEEEEEEc
Q 043732 15 KLFVGGLAWETNSDTL---RTYFEQFGDILEAVV--ITHKNTGRSKGYGFVTFR 63 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L---~~~F~~~G~I~~v~i--~~d~~tg~~kG~gFV~F~ 63 (249)
..|+.+||.++.+..+ ++.|..+..-..|.+ ........+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4588999999988765 455555543333333 223445667777766554
No 197
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.20 E-value=3.2e+02 Score=19.16 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=34.0
Q ss_pred EcCCCCCCCHHHHHHHH-------hhCCCEEEEEEEecCCCCC-cccE--E-EEEEcCHHHHHHHHh
Q 043732 18 VGGLAWETNSDTLRTYF-------EQFGDILEAVVITHKNTGR-SKGY--G-FVTFRDPGSALRACA 73 (249)
Q Consensus 18 VgnLp~~~te~~L~~~F-------~~~G~I~~v~i~~d~~tg~-~kG~--g-FV~F~~~e~A~~Al~ 73 (249)
+-.|..++++++++++. .....|+++.+-++..... .++| + +++|+|.++.+.-..
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~ 72 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQT 72 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHc
Confidence 33567788887775544 3556788887766543222 3444 3 368899887655544
No 198
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=20.15 E-value=36 Score=30.08 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCCcEEEEcCCCCCCCHHH-H--HHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 10 DSANRKLFVGGLAWETNSDT-L--RTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~-L--~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
+...-.++++++-..+..+- | ...|+.+-.+...++++++. +..++++|+.|+..+...++-.+-+ +.|.-+.|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCccee
Confidence 45566677887766665554 3 67888888888888888764 7788999999998777777766543 445444444
Q ss_pred EE
Q 043732 86 CN 87 (249)
Q Consensus 86 V~ 87 (249)
+.
T Consensus 172 ~a 173 (290)
T KOG0226|consen 172 LA 173 (290)
T ss_pred ec
Confidence 43
No 199
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.12 E-value=61 Score=25.21 Aligned_cols=70 Identities=9% Similarity=-0.059 Sum_probs=42.5
Q ss_pred EEEEcCCC--CCCCHHHHHHHHhhC-CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 15 KLFVGGLA--WETNSDTLRTYFEQF-GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 15 ~lfVgnLp--~~~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
...|+.+- ...+-+.|.+.+.+. +....+++..- ..++..+.|.++++++++++.....+++..|.++.-
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRW 89 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhh
Confidence 34455542 345566666666432 22112333211 246889999999999999987666677777666644
Done!