Query 043732
Match_columns 249
No_of_seqs 353 out of 1740
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 3.9E-21 1.3E-25 147.0 15.5 88 5-92 9-96 (116)
2 4fxv_A ELAV-like protein 1; RN 99.9 8.7E-22 3E-26 147.4 11.4 81 10-90 16-97 (99)
3 3s7r_A Heterogeneous nuclear r 99.9 2.2E-21 7.6E-26 140.8 11.9 84 6-89 4-87 (87)
4 2dgs_A DAZ-associated protein 99.9 3.3E-21 1.1E-25 143.3 12.5 89 7-95 4-92 (99)
5 3s8s_A Histone-lysine N-methyl 99.9 9.8E-22 3.3E-26 150.0 9.6 84 10-93 3-87 (110)
6 2dgo_A Cytotoxic granule-assoc 99.9 1.5E-20 5.1E-25 143.4 15.6 91 6-96 8-99 (115)
7 2lkz_A RNA-binding protein 5; 99.9 4.7E-22 1.6E-26 148.0 6.5 86 5-90 1-93 (95)
8 2rs2_A Musashi-1, RNA-binding 99.9 3.2E-21 1.1E-25 146.5 11.2 88 8-95 20-107 (109)
9 2lxi_A RNA-binding protein 10; 99.9 7.5E-22 2.5E-26 145.4 7.4 81 13-93 1-84 (91)
10 2dh8_A DAZ-associated protein 99.9 2.6E-21 9E-26 145.3 10.5 90 5-94 8-97 (105)
11 2cq0_A Eukaryotic translation 99.9 6.5E-21 2.2E-25 142.7 12.4 88 7-94 9-97 (103)
12 2cpz_A CUG triplet repeat RNA- 99.9 4.5E-21 1.5E-25 146.5 11.5 87 8-94 20-107 (115)
13 2cqg_A TDP-43, TAR DNA-binding 99.9 1.4E-20 4.6E-25 140.9 13.9 88 6-94 8-95 (103)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.3E-21 8E-26 144.8 9.6 91 5-95 4-95 (102)
15 2dng_A Eukaryotic translation 99.8 1.7E-20 5.8E-25 140.5 14.1 87 7-94 9-95 (103)
16 1x5s_A Cold-inducible RNA-bind 99.8 3.8E-21 1.3E-25 143.6 10.2 90 5-94 4-94 (102)
17 1x5u_A Splicing factor 3B subu 99.8 8.8E-21 3E-25 142.3 12.1 89 6-94 8-97 (105)
18 2dnm_A SRP46 splicing factor; 99.8 4.6E-21 1.6E-25 143.5 10.5 90 6-95 6-96 (103)
19 1x4h_A RNA-binding protein 28; 99.8 7E-21 2.4E-25 144.1 11.4 90 6-95 8-104 (111)
20 1whw_A Hypothetical protein ri 99.8 1.1E-20 3.7E-25 140.4 12.1 87 8-94 3-90 (99)
21 1x5t_A Splicing factor 3B subu 99.8 9.2E-21 3.1E-25 139.8 11.3 85 11-95 3-89 (96)
22 2do0_A HnRNP M, heterogeneous 99.8 3.7E-20 1.3E-24 140.9 14.6 90 5-95 7-97 (114)
23 2cph_A RNA binding motif prote 99.8 1E-20 3.5E-25 142.3 11.2 90 5-94 7-99 (107)
24 2dnz_A Probable RNA-binding pr 99.8 2.1E-20 7.1E-25 137.7 12.3 83 11-93 3-86 (95)
25 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-20 7.5E-25 140.1 12.6 87 7-94 9-96 (104)
26 2cpe_A RNA-binding protein EWS 99.8 1E-20 3.5E-25 143.9 10.9 90 5-94 7-105 (113)
27 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.2E-25 138.6 10.8 86 5-90 8-94 (94)
28 1u6f_A Tcubp1, RNA-binding pro 99.8 2.1E-20 7.1E-25 147.3 12.8 88 8-95 37-125 (139)
29 2fy1_A RNA-binding motif prote 99.8 2.7E-20 9.2E-25 143.0 12.5 85 9-94 3-88 (116)
30 2cpf_A RNA binding motif prote 99.8 2E-20 6.8E-25 138.7 11.3 85 10-94 2-90 (98)
31 2dgp_A Bruno-like 4, RNA bindi 99.8 1.7E-20 6E-25 140.9 10.7 90 5-94 5-98 (106)
32 2d9p_A Polyadenylate-binding p 99.8 3.3E-20 1.1E-24 138.8 12.1 90 5-96 7-97 (103)
33 1x4b_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 144.3 9.8 83 12-94 26-108 (116)
34 2cq3_A RNA-binding protein 9; 99.8 6.5E-20 2.2E-24 137.2 13.4 89 5-95 7-96 (103)
35 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-20 2.1E-24 137.3 12.8 88 6-95 8-96 (103)
36 3md1_A Nuclear and cytoplasmic 99.8 5.1E-20 1.7E-24 132.1 11.8 80 13-92 1-81 (83)
37 2m2b_A RNA-binding protein 10; 99.8 6.2E-21 2.1E-25 149.4 7.5 89 6-95 16-111 (131)
38 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.7E-20 1.3E-24 134.0 10.9 81 11-91 4-85 (87)
39 2do4_A Squamous cell carcinoma 99.8 7.1E-20 2.4E-24 136.3 12.3 86 7-93 11-97 (100)
40 2cqc_A Arginine/serine-rich sp 99.8 5.1E-20 1.8E-24 135.4 11.3 85 6-90 8-93 (95)
41 4f25_A Polyadenylate-binding p 99.8 3E-20 1E-24 142.4 10.4 81 12-94 4-85 (115)
42 1p27_B RNA-binding protein 8A; 99.8 4.1E-20 1.4E-24 138.8 10.8 86 8-93 18-104 (106)
43 1wg5_A Heterogeneous nuclear r 99.8 6.5E-20 2.2E-24 138.0 11.8 85 7-92 9-94 (104)
44 2dnh_A Bruno-like 5, RNA bindi 99.8 8E-20 2.7E-24 137.1 12.1 87 8-95 10-100 (105)
45 1wez_A HnRNP H', FTP-3, hetero 99.8 3.5E-20 1.2E-24 139.3 10.1 83 7-91 9-91 (102)
46 3p5t_L Cleavage and polyadenyl 99.8 5E-21 1.7E-25 140.2 5.3 80 14-93 2-84 (90)
47 2dis_A Unnamed protein product 99.8 1E-19 3.6E-24 137.3 12.7 86 9-94 4-94 (109)
48 2div_A TRNA selenocysteine ass 99.8 6.9E-20 2.4E-24 136.0 11.4 85 8-92 4-94 (99)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5E-20 1.7E-24 132.8 10.3 82 9-90 3-85 (85)
50 2dhg_A TRNA selenocysteine ass 99.8 5.5E-20 1.9E-24 137.7 10.8 86 8-94 4-92 (104)
51 2khc_A Testis-specific RNP-typ 99.8 3.6E-20 1.2E-24 141.9 10.0 82 8-89 35-117 (118)
52 3ucg_A Polyadenylate-binding p 99.8 8.8E-20 3E-24 132.6 11.6 81 11-91 4-84 (89)
53 1oo0_B CG8781-PA, drosophila Y 99.8 4.4E-20 1.5E-24 139.8 10.0 88 7-94 20-108 (110)
54 1s79_A Lupus LA protein; RRM, 99.8 5.1E-20 1.7E-24 138.9 10.1 84 7-91 5-88 (103)
55 3ex7_B RNA-binding protein 8A; 99.8 3.4E-20 1.2E-24 143.6 9.3 90 7-96 16-106 (126)
56 2ywk_A Putative RNA-binding pr 99.8 8.5E-20 2.9E-24 134.3 10.6 84 6-90 9-93 (95)
57 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-20 5.8E-25 132.8 6.5 76 14-89 1-76 (77)
58 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-19 5.4E-24 145.1 12.9 85 9-93 35-120 (156)
59 2x1f_A MRNA 3'-END-processing 99.8 1E-19 3.4E-24 134.6 10.8 81 13-93 2-83 (96)
60 2kxn_B Transformer-2 protein h 99.8 3.4E-20 1.2E-24 145.2 8.7 87 8-94 41-128 (129)
61 1sjq_A Polypyrimidine tract-bi 99.8 5E-20 1.7E-24 139.4 8.9 80 9-94 12-94 (105)
62 2lea_A Serine/arginine-rich sp 99.8 3.5E-20 1.2E-24 146.2 8.4 89 7-95 41-130 (135)
63 2la6_A RNA-binding protein FUS 99.8 1.2E-19 4.3E-24 134.8 10.9 85 6-90 6-99 (99)
64 2cqp_A RNA-binding protein 12; 99.8 5.7E-20 2E-24 136.2 9.1 83 8-90 10-93 (98)
65 2jwn_A Embryonic polyadenylate 99.8 1.9E-19 6.4E-24 139.1 12.1 82 12-93 35-116 (124)
66 3n9u_C Cleavage and polyadenyl 99.8 1.2E-19 4.1E-24 146.7 11.2 80 12-91 54-136 (156)
67 1x4a_A Splicing factor, argini 99.8 2.3E-19 7.9E-24 135.6 12.1 84 8-94 17-101 (109)
68 4a8x_A RNA-binding protein wit 99.8 1.1E-19 3.8E-24 131.6 9.8 83 11-93 2-86 (88)
69 2cpy_A RNA-binding protein 12; 99.8 6.6E-20 2.2E-24 140.2 9.0 84 8-92 10-94 (114)
70 2cq4_A RNA binding motif prote 99.8 1.2E-20 4E-25 143.9 4.6 83 11-93 23-105 (114)
71 2mss_A Protein (musashi1); RNA 99.8 4.1E-20 1.4E-24 130.4 6.7 75 15-89 1-75 (75)
72 2dgv_A HnRNP M, heterogeneous 99.8 1.8E-19 6.2E-24 131.8 10.3 84 8-93 3-87 (92)
73 2jrs_A RNA-binding protein 39; 99.8 2.3E-19 7.7E-24 136.1 11.0 86 7-92 20-106 (108)
74 1p1t_A Cleavage stimulation fa 99.8 3.5E-20 1.2E-24 138.7 6.3 87 8-94 3-90 (104)
75 3ulh_A THO complex subunit 4; 99.8 2.3E-19 7.8E-24 135.0 10.8 83 7-90 23-106 (107)
76 1iqt_A AUF1, heterogeneous nuc 99.8 3.2E-20 1.1E-24 130.8 5.7 75 15-89 1-75 (75)
77 1x4c_A Splicing factor, argini 99.8 7.3E-19 2.5E-23 133.0 13.4 81 6-93 8-94 (108)
78 2dgw_A Probable RNA-binding pr 99.8 4.8E-19 1.6E-23 129.5 12.0 83 7-92 4-87 (91)
79 2cq1_A PTB-like protein L; RRM 99.8 4.2E-19 1.4E-23 133.5 11.9 83 7-95 9-94 (101)
80 2kn4_A Immunoglobulin G-bindin 99.8 2.1E-19 7.2E-24 144.3 10.9 87 9-95 66-153 (158)
81 3ns6_A Eukaryotic translation 99.8 5.5E-20 1.9E-24 137.5 6.8 82 10-91 3-92 (100)
82 2ek1_A RNA-binding protein 12; 99.8 5.4E-20 1.8E-24 135.4 6.4 82 9-90 11-93 (95)
83 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.3E-19 1.1E-23 140.0 10.9 83 7-89 57-140 (140)
84 2fc9_A NCL protein; structure 99.8 4.8E-19 1.6E-23 132.0 11.1 83 7-93 9-92 (101)
85 2cpi_A CCR4-NOT transcription 99.8 2.2E-19 7.4E-24 136.6 9.2 88 6-93 8-102 (111)
86 2dgx_A KIAA0430 protein; RRM d 99.8 5.1E-19 1.7E-23 131.1 10.9 81 9-92 5-90 (96)
87 2xs2_A Deleted in azoospermia- 99.8 1.9E-19 6.6E-24 134.4 8.4 85 8-94 4-88 (102)
88 2db1_A Heterogeneous nuclear r 99.8 2.6E-19 8.9E-24 137.9 9.3 83 8-91 12-97 (118)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-19 4.1E-24 135.4 6.9 84 8-92 14-98 (100)
90 2hgl_A HNRPF protein, heteroge 99.8 2.2E-19 7.7E-24 142.0 8.8 84 7-91 38-124 (136)
91 3q2s_C Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 152.7 10.4 80 12-91 67-149 (229)
92 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 143.6 11.1 89 8-96 67-156 (165)
93 2fc8_A NCL protein; structure 99.8 6.9E-19 2.4E-23 131.2 10.8 84 7-93 9-93 (102)
94 2hgm_A HNRPF protein, heteroge 99.8 2.5E-19 8.5E-24 140.0 8.4 81 9-91 38-120 (126)
95 2kt5_A RNA and export factor-b 99.8 1E-18 3.5E-23 135.1 11.7 84 9-93 31-115 (124)
96 1x4e_A RNA binding motif, sing 99.8 6.7E-20 2.3E-24 132.3 4.5 80 10-89 2-82 (85)
97 2dgu_A Heterogeneous nuclear r 99.8 1.8E-18 6.2E-23 129.5 12.4 83 6-96 4-87 (103)
98 2dnn_A RNA-binding protein 12; 99.8 4.2E-19 1.4E-23 135.3 8.8 79 10-90 13-91 (109)
99 2dnq_A RNA-binding protein 4B; 99.8 1.8E-18 6.1E-23 126.3 11.7 79 8-94 3-82 (90)
100 2ki2_A SS-DNA binding protein 99.8 1E-19 3.5E-24 132.8 4.6 79 14-93 2-81 (90)
101 1l3k_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 143.1 11.8 92 1-92 1-92 (196)
102 1x4d_A Matrin 3; structural ge 99.8 7.2E-19 2.5E-23 132.4 9.3 78 9-92 11-92 (102)
103 2hvz_A Splicing factor, argini 99.8 9.1E-19 3.1E-23 130.5 9.8 76 14-94 1-77 (101)
104 2ad9_A Polypyrimidine tract-bi 99.8 7.9E-19 2.7E-23 135.8 9.6 81 9-95 27-110 (119)
105 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 142.4 12.1 87 10-96 101-187 (196)
106 2ytc_A PRE-mRNA-splicing facto 99.8 3E-18 1E-22 123.5 11.6 80 5-90 4-85 (85)
107 2cpx_A Hypothetical protein FL 99.8 3.3E-19 1.1E-23 135.8 6.7 87 9-95 21-108 (115)
108 1wel_A RNA-binding protein 12; 99.8 3.9E-19 1.3E-23 137.7 7.1 83 9-91 21-103 (124)
109 1wex_A Hypothetical protein (r 99.8 2.3E-18 8E-23 130.0 11.2 82 7-94 9-93 (104)
110 2err_A Ataxin-2-binding protei 99.8 1.1E-18 3.7E-23 132.4 9.3 84 6-91 22-106 (109)
111 1x5o_A RNA binding motif, sing 99.8 1.5E-18 5.1E-23 132.1 10.1 83 7-90 19-110 (114)
112 1x4g_A Nucleolysin TIAR; struc 99.8 2.5E-18 8.7E-23 130.0 10.9 80 9-94 21-101 (109)
113 1fj7_A Nucleolin RBD1, protein 99.8 1.6E-19 5.3E-24 134.7 4.0 83 9-93 13-96 (101)
114 2lmi_A GRSF-1, G-rich sequence 99.8 3.6E-19 1.2E-23 134.5 6.1 84 7-91 5-91 (107)
115 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.5E-23 130.0 9.3 79 8-92 16-97 (100)
116 2nlw_A Eukaryotic translation 99.8 2.2E-18 7.6E-23 129.7 9.8 83 7-91 9-99 (105)
117 2lcw_A RNA-binding protein FUS 99.6 4E-20 1.4E-24 141.5 0.0 86 8-93 2-96 (116)
118 2dha_A FLJ20171 protein; RRM d 99.8 9.1E-19 3.1E-23 136.2 7.4 80 10-90 20-103 (123)
119 4f02_A Polyadenylate-binding p 99.8 3.8E-18 1.3E-22 143.6 11.7 86 7-92 9-95 (213)
120 2dgt_A RNA-binding protein 30; 99.8 5.5E-18 1.9E-22 124.2 11.0 79 7-93 4-83 (92)
121 2e5g_A U6 snRNA-specific termi 99.8 1.1E-17 3.7E-22 123.2 12.4 80 9-93 4-83 (94)
122 2hgn_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 141.2 4.7 82 9-92 42-123 (139)
123 2cpj_A Non-POU domain-containi 99.8 4.1E-18 1.4E-22 126.5 9.9 81 6-92 8-89 (99)
124 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-18 1.2E-22 125.3 9.1 79 9-94 4-85 (93)
125 2wbr_A GW182, gawky, LD47780P; 99.7 3E-18 1E-22 125.1 8.4 74 11-90 5-79 (89)
126 1why_A Hypothetical protein ri 99.7 8.4E-18 2.9E-22 124.4 10.6 81 7-93 11-94 (97)
127 3d2w_A TAR DNA-binding protein 99.7 4.5E-18 1.5E-22 124.6 9.0 80 8-93 6-85 (89)
128 2krb_A Eukaryotic translation 99.7 1.9E-18 6.6E-23 123.8 6.8 72 13-86 1-80 (81)
129 2cpd_A Apobec-1 stimulating pr 99.7 1.9E-17 6.5E-22 122.9 12.4 79 7-93 9-90 (99)
130 2jvr_A Nucleolar protein 3; RN 99.7 2.7E-18 9.2E-23 131.2 7.8 78 10-91 25-104 (111)
131 1wf1_A RNA-binding protein RAL 99.7 7.8E-18 2.7E-22 127.5 10.3 75 11-93 25-101 (110)
132 2e5j_A Methenyltetrahydrofolat 99.7 4.8E-18 1.7E-22 125.8 8.9 80 9-93 15-95 (97)
133 2a3j_A U1 small nuclear ribonu 99.7 6.5E-18 2.2E-22 132.0 9.8 82 8-92 24-110 (127)
134 1x5p_A Negative elongation fac 99.7 3.1E-17 1.1E-21 121.4 12.8 79 8-94 10-89 (97)
135 2dnl_A Cytoplasmic polyadenyla 99.7 2.8E-18 9.5E-23 131.0 7.3 80 9-90 4-86 (114)
136 1wf0_A TDP-43, TAR DNA-binding 99.7 4E-18 1.4E-22 123.9 7.6 78 11-94 3-80 (88)
137 2dnp_A RNA-binding protein 14; 99.7 1.6E-17 5.6E-22 121.1 10.9 78 8-93 4-82 (90)
138 2la4_A Nuclear and cytoplasmic 99.7 5.3E-18 1.8E-22 126.3 8.3 77 9-91 23-100 (101)
139 2jvo_A Nucleolar protein 3; nu 99.7 9.4E-18 3.2E-22 127.2 9.7 80 7-94 25-105 (108)
140 1fjc_A Nucleolin RBD2, protein 99.7 4.5E-18 1.5E-22 125.4 7.5 82 7-93 10-92 (96)
141 1x4f_A Matrin 3; structural ge 99.7 4.3E-18 1.5E-22 130.2 7.5 78 10-93 22-103 (112)
142 1nu4_A U1A RNA binding domain; 99.7 6.8E-18 2.3E-22 124.5 7.5 82 9-93 4-90 (97)
143 2f3j_A RNA and export factor b 99.7 1.4E-17 4.8E-22 137.1 9.1 81 10-91 85-166 (177)
144 3md3_A Nuclear and cytoplasmic 99.7 8.2E-17 2.8E-21 128.3 12.8 83 8-90 82-165 (166)
145 3lqv_A PRE-mRNA branch site pr 99.7 1.8E-17 6.3E-22 126.2 8.6 81 10-93 5-86 (115)
146 1fxl_A Paraneoplastic encephal 99.7 6.2E-17 2.1E-21 129.2 11.9 81 12-92 1-82 (167)
147 2j8a_A Histone-lysine N-methyl 99.7 3E-17 1E-21 127.8 9.4 78 14-91 3-95 (136)
148 2xnq_A Nuclear polyadenylated 99.7 6.8E-17 2.3E-21 120.0 11.0 76 8-91 17-94 (97)
149 1b7f_A Protein (SXL-lethal pro 99.7 5.1E-17 1.7E-21 130.2 11.1 82 12-93 2-84 (168)
150 2kvi_A Nuclear polyadenylated 99.7 1.5E-17 5E-22 123.0 7.2 78 8-93 5-84 (96)
151 2yh0_A Splicing factor U2AF 65 99.7 7.3E-17 2.5E-21 132.8 12.1 84 10-93 111-195 (198)
152 2e44_A Insulin-like growth fac 99.7 3.3E-17 1.1E-21 120.7 9.0 81 8-92 10-92 (96)
153 3beg_B Splicing factor, argini 99.7 1.5E-17 5E-22 127.4 7.1 78 7-91 10-93 (115)
154 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-16 3.7E-21 149.1 14.4 84 10-93 99-183 (437)
155 2qfj_A FBP-interacting repress 99.7 7.7E-17 2.6E-21 134.4 11.8 82 11-92 123-205 (216)
156 3egn_A RNA-binding protein 40; 99.7 6E-18 2.1E-22 133.9 4.6 87 9-95 41-133 (143)
157 2cjk_A Nuclear polyadenylated 99.7 1.7E-17 5.9E-22 132.9 7.3 81 12-92 86-166 (167)
158 2i2y_A Fusion protein consists 99.7 4.3E-17 1.5E-21 130.0 9.5 81 7-92 67-148 (150)
159 1whx_A Hypothetical protein ri 99.7 1.9E-17 6.6E-22 126.0 6.9 78 9-92 6-84 (111)
160 2voo_A Lupus LA protein; RNA-b 99.7 1.1E-16 3.6E-21 133.6 11.9 79 12-91 108-186 (193)
161 2cjk_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 131.1 8.7 79 12-91 2-80 (167)
162 2g4b_A Splicing factor U2AF 65 99.7 1.3E-16 4.3E-21 128.5 11.4 81 9-89 90-171 (172)
163 1wg1_A KIAA1579 protein, homol 99.7 5.9E-17 2E-21 117.9 8.0 75 10-91 2-77 (88)
164 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 129.1 10.8 80 9-92 42-124 (164)
165 4f02_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 134.4 9.4 79 12-92 102-181 (213)
166 2cq2_A Hypothetical protein LO 99.7 1.4E-16 4.8E-21 122.1 8.8 76 9-90 21-104 (114)
167 2hzc_A Splicing factor U2AF 65 99.7 2.9E-16 9.9E-21 113.3 8.9 72 10-88 3-86 (87)
168 1b7f_A Protein (SXL-lethal pro 99.7 5.4E-16 1.9E-20 124.1 11.3 82 8-89 84-168 (168)
169 3md3_A Nuclear and cytoplasmic 99.7 4.4E-16 1.5E-20 124.1 10.7 79 14-93 1-80 (166)
170 2qfj_A FBP-interacting repress 99.7 2.3E-16 7.7E-21 131.5 9.2 81 12-92 27-108 (216)
171 3pgw_A U1-A; protein-RNA compl 99.6 5.9E-16 2E-20 134.8 10.9 85 6-93 2-91 (282)
172 3tyt_A Heterogeneous nuclear r 99.6 7.2E-16 2.5E-20 129.6 10.1 77 11-92 2-80 (205)
173 3zzy_A Polypyrimidine tract-bi 99.6 8.8E-16 3E-20 120.3 9.8 78 11-93 26-107 (130)
174 3nmr_A Cugbp ELAV-like family 99.6 8.8E-16 3E-20 123.5 10.1 82 12-93 2-89 (175)
175 1fxl_A Paraneoplastic encephal 99.6 1E-15 3.5E-20 122.0 10.4 81 9-89 84-167 (167)
176 2diu_A KIAA0430 protein; struc 99.6 6.3E-16 2.1E-20 114.0 8.1 74 11-94 6-86 (96)
177 2bz2_A Negative elongation fac 99.6 9E-16 3.1E-20 118.7 8.6 77 9-93 35-112 (121)
178 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7.1E-20 113.9 10.0 81 10-90 5-92 (105)
179 3nmr_A Cugbp ELAV-like family 99.6 1.7E-15 5.9E-20 121.8 9.9 79 10-89 92-174 (175)
180 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 116.8 10.3 74 14-93 26-103 (124)
181 1fje_B Nucleolin RBD12, protei 99.6 2.3E-15 7.8E-20 121.7 9.1 78 9-91 95-173 (175)
182 1fje_B Nucleolin RBD12, protei 99.6 3.7E-16 1.3E-20 126.4 4.0 85 8-93 8-92 (175)
183 3u1l_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.6E-20 130.4 7.6 78 9-92 130-229 (240)
184 2adc_A Polypyrimidine tract-bi 99.6 4.1E-15 1.4E-19 126.3 9.7 80 8-92 29-110 (229)
185 2dit_A HIV TAT specific factor 99.6 1.8E-14 6E-19 109.5 12.2 81 9-93 11-103 (112)
186 3pgw_A U1-A; protein-RNA compl 99.6 7.7E-15 2.6E-19 127.7 11.5 78 8-90 202-281 (282)
187 2ghp_A U4/U6 snRNA-associated 99.6 4E-15 1.4E-19 130.1 9.8 82 10-92 207-291 (292)
188 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.8E-19 126.8 12.0 83 11-93 93-176 (284)
189 3smz_A Protein raver-1, ribonu 99.6 9.1E-15 3.1E-19 127.3 10.1 85 9-94 180-266 (284)
190 2d9o_A DNAJ (HSP40) homolog, s 99.6 6.1E-14 2.1E-18 105.0 13.1 78 10-93 7-91 (100)
191 2g4b_A Splicing factor U2AF 65 99.5 3E-14 1E-18 114.5 10.0 76 11-92 2-88 (172)
192 1qm9_A Polypyrimidine tract-bi 99.5 9.5E-15 3.2E-19 120.6 6.9 77 12-93 2-80 (198)
193 2ghp_A U4/U6 snRNA-associated 99.5 2.9E-14 1E-18 124.6 10.4 81 8-90 36-116 (292)
194 2yh0_A Splicing factor U2AF 65 99.5 3.1E-14 1.1E-18 116.9 9.9 76 11-92 2-88 (198)
195 3sde_A Paraspeckle component 1 99.5 2.1E-14 7.2E-19 124.3 9.1 82 11-93 94-180 (261)
196 3tyt_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 121.7 6.0 76 12-89 122-204 (205)
197 3v4m_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 105.8 7.8 80 11-90 3-95 (105)
198 1jmt_A Splicing factor U2AF 35 99.5 1.8E-14 6.2E-19 108.5 4.6 71 18-89 20-103 (104)
199 3sde_A Paraspeckle component 1 99.5 9.1E-14 3.1E-18 120.3 9.6 77 9-91 18-95 (261)
200 2adc_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 117.3 9.2 76 11-91 149-227 (229)
201 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-13 4.2E-18 113.9 8.6 76 11-91 118-196 (198)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5.3E-18 105.8 8.3 79 12-90 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.4 8.6E-13 2.9E-17 119.0 8.4 76 9-90 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 1.6E-11 5.6E-16 93.8 7.6 76 11-90 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 5.8E-11 2E-15 91.6 7.7 78 6-89 11-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.5E-10 8.7E-15 83.2 8.5 73 11-91 5-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1.5E-09 5.1E-14 79.6 6.3 73 10-90 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.4E-09 8.2E-14 90.1 6.8 67 24-90 140-211 (222)
209 2dhx_A Poly (ADP-ribose) polym 98.3 9.7E-06 3.3E-10 60.1 11.1 74 10-91 5-83 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.2 2.8E-06 9.6E-11 63.7 7.3 74 10-89 18-97 (117)
211 1whv_A Poly(A)-specific ribonu 97.6 0.00016 5.5E-09 53.0 6.3 62 6-75 8-69 (100)
212 1wey_A Calcipressin 1; structu 97.5 0.00047 1.6E-08 51.1 8.7 75 11-91 3-83 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.00065 2.2E-08 51.7 9.1 76 8-90 19-95 (119)
214 3ctr_A Poly(A)-specific ribonu 97.3 0.00033 1.1E-08 51.4 5.0 51 15-74 8-58 (101)
215 1uw4_A UPF3X; nonsense mediate 96.7 0.0063 2.1E-07 44.0 7.4 65 14-78 2-69 (91)
216 3p3d_A Nucleoporin 53; structu 96.6 0.0041 1.4E-07 48.0 5.8 78 12-90 6-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.3 0.0021 7.2E-08 59.8 3.2 57 13-75 53-109 (464)
218 2kn4_A Immunoglobulin G-bindin 95.5 0.012 4.3E-07 45.7 4.3 32 42-75 2-33 (158)
219 2l08_A Regulator of nonsense t 93.8 0.054 1.9E-06 39.5 3.8 78 12-89 8-93 (97)
220 2i2y_A Fusion protein consists 92.2 0.032 1.1E-06 43.1 0.5 40 51-91 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 89.4 0.59 2E-05 43.8 6.4 54 13-75 440-493 (507)
222 3fry_A Probable copper-exporti 50.0 43 0.0015 21.3 5.7 58 13-77 6-63 (73)
223 2g0c_A ATP-dependent RNA helic 49.4 42 0.0014 22.1 5.6 66 15-89 2-74 (76)
224 2cu1_A Mitogen-activated prote 36.4 49 0.0017 23.9 4.3 63 20-90 23-86 (103)
225 2i9x_A Putative septation prot 36.1 49 0.0017 23.1 4.3 26 39-64 5-30 (87)
226 3lpe_A Putative transcription 34.2 1E+02 0.0035 21.3 5.9 47 26-77 21-72 (92)
227 4eyt_A Telomerase associated p 32.9 1.3E+02 0.0045 21.3 8.1 69 11-87 10-86 (129)
228 3j21_T 50S ribosomal protein L 32.7 1.2E+02 0.004 21.1 5.8 54 17-73 26-81 (86)
229 4e8u_A Putative uncharacterize 31.8 1.5E+02 0.0053 23.3 7.0 56 15-73 14-81 (172)
230 2ia9_A Putative septation prot 31.3 63 0.0021 23.2 4.3 26 39-64 5-30 (100)
231 3swz_A Steroid 17-alpha-hydrox 30.9 63 0.0022 28.6 5.3 58 16-82 17-78 (494)
232 2i9z_A Putative septation prot 30.3 68 0.0023 23.3 4.3 26 39-64 5-30 (105)
233 3ts2_A Protein LIN-28 homolog 30.0 8.6 0.00029 29.7 -0.6 28 28-63 2-29 (148)
234 1xn9_A 30S ribosomal protein S 28.6 96 0.0033 22.2 4.9 49 23-72 28-81 (101)
235 2lfv_A Protein DAMX; cell divi 34.2 12 0.00042 27.2 0.0 59 20-79 29-88 (106)
236 3mfb_A Uncharacterized protein 27.9 93 0.0032 24.2 5.1 36 25-60 3-41 (157)
237 1ywx_A 30S ribosomal protein S 27.7 1.1E+02 0.0038 22.0 5.1 47 23-70 28-79 (102)
238 3bgu_A Ferredoxin-like protein 27.4 1.7E+02 0.0059 20.9 6.8 56 16-72 25-90 (116)
239 2v94_A RPS24, 30S ribosomal pr 26.5 1E+02 0.0034 22.4 4.7 48 23-71 37-89 (107)
240 4bby_A Alkyldihydroxyacetoneph 25.7 61 0.0021 30.9 4.4 53 21-74 351-407 (658)
241 3bb5_A Stress responsive alpha 25.1 1.9E+02 0.0067 20.8 8.1 59 15-73 23-92 (121)
242 3h7h_B Transcription elongatio 24.0 1.7E+02 0.0058 21.0 5.6 34 40-78 41-74 (106)
243 2qyc_A Ferredoxin-like protein 23.7 1.8E+02 0.0063 20.0 7.3 52 19-71 11-72 (103)
244 2exu_A Transcription initiatio 23.2 1.6E+02 0.0054 23.8 5.8 30 54-83 148-177 (200)
245 1wvf_A 4-cresol dehydrogenase 22.0 65 0.0022 29.6 3.7 43 29-72 217-261 (520)
246 3uzu_A Ribosomal RNA small sub 21.8 42 0.0014 28.4 2.2 34 14-47 115-148 (279)
247 3d53_A Inorganic pyrophosphata 21.4 1.4E+02 0.0047 23.6 5.0 37 27-74 132-168 (173)
248 1fme_A FSD-EY peptide; beta-BE 21.3 54 0.0018 17.3 1.7 13 25-37 13-25 (28)
249 2e5p_A Protein PHF1, PHD finge 20.8 48 0.0016 22.0 1.8 11 55-65 37-47 (68)
250 1i4w_A Mitochondrial replicati 20.4 70 0.0024 28.1 3.4 22 15-36 144-165 (353)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.9e-21 Score=147.02 Aligned_cols=88 Identities=58% Similarity=0.989 Sum_probs=82.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
.....+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|++|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 45567888999999999999999999999999999999999999999999999999999999999999998779999999
Q ss_pred EEEEccCC
Q 043732 85 NCNLAHLG 92 (249)
Q Consensus 85 ~V~~a~~~ 92 (249)
+|+++..+
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=147.37 Aligned_cols=81 Identities=27% Similarity=0.391 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
..+.++|||+|||.++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999985 5789999999999
Q ss_pred cc
Q 043732 89 AH 90 (249)
Q Consensus 89 a~ 90 (249)
|+
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 94
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.2e-21 Score=140.79 Aligned_cols=84 Identities=32% Similarity=0.721 Sum_probs=77.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
....+...++|||+|||+++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.++..|+|++|+
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 44567888999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEEc
Q 043732 86 CNLA 89 (249)
Q Consensus 86 V~~a 89 (249)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=143.28 Aligned_cols=89 Identities=31% Similarity=0.540 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
..++...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+..+..|+|++|+|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999994457899999999
Q ss_pred EEccCCCCC
Q 043732 87 NLAHLGRTR 95 (249)
Q Consensus 87 ~~a~~~~~~ 95 (249)
+++..+..+
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999755443
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=9.8e-22 Score=149.96 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.+ +..|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999986 5789999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+..++
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 95443
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.5e-20 Score=143.43 Aligned_cols=91 Identities=33% Similarity=0.517 Sum_probs=82.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
...+..+.++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456778899999999999999999999999999999999999989999999999999999999999976 578999999
Q ss_pred EEEEccCCCCCC
Q 043732 85 NCNLAHLGRTRP 96 (249)
Q Consensus 85 ~V~~a~~~~~~~ 96 (249)
+|+++..+..+.
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999997655443
No 7
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-22 Score=148.01 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC--EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-C----
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGD--ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-P---- 77 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~---- 77 (249)
|+......-.+|||+||++++|+++|+++|++||. |.+|++++|+.|+++||||||+|.+.++|++||+.++ .
T Consensus 1 mg~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred CCcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 34556677889999999999999999999999995 6789999999999999999999999999999999863 2
Q ss_pred eeCCeEeEEEEcc
Q 043732 78 MIGGRKANCNLAH 90 (249)
Q Consensus 78 ~i~Gr~l~V~~a~ 90 (249)
.|+||+|+|++|+
T Consensus 81 ~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 81 KIDGKTIGVDFAK 93 (95)
T ss_dssp EETTEEEEEEECC
T ss_pred eECCEEEEEEEcc
Confidence 4999999999994
No 8
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=3.2e-21 Score=146.51 Aligned_cols=88 Identities=34% Similarity=0.647 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
+++...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
++..+..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99765543
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=7.5e-22 Score=145.39 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCCeEeEEEEc
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-PMIGGRKANCNLA 89 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~Gr~l~V~~a 89 (249)
+++|||+|||.+++|++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.+ + ..|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999986 4 4599999999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 10
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=145.32 Aligned_cols=90 Identities=33% Similarity=0.670 Sum_probs=82.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
....++...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+..+..|+|+.|
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 45567788999999999999999999999999999999999999999999999999999999999999995577999999
Q ss_pred EEEEccCCCC
Q 043732 85 NCNLAHLGRT 94 (249)
Q Consensus 85 ~V~~a~~~~~ 94 (249)
+|+++..+..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999965543
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.5e-21 Score=142.70 Aligned_cols=88 Identities=26% Similarity=0.338 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
..+....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 445777899999999999999999999999999999999999999999999999999999999999976 5789999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|+++..+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999965543
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=4.5e-21 Score=146.45 Aligned_cols=87 Identities=28% Similarity=0.394 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999885 57899999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
++++.+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99965544
No 13
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=140.94 Aligned_cols=88 Identities=33% Similarity=0.624 Sum_probs=80.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
....+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. .+.|+|++|+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 345667789999999999999999999999999999999999999999999999999999999999995 5689999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|+++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999965543
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-21 Score=144.75 Aligned_cols=91 Identities=31% Similarity=0.433 Sum_probs=82.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.......+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34455678899999999999999999999999999999999999999999999999999999999999885 57799999
Q ss_pred eEEEEccCCCCC
Q 043732 84 ANCNLAHLGRTR 95 (249)
Q Consensus 84 l~V~~a~~~~~~ 95 (249)
|+|++++.++.+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999765543
No 15
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.7e-20 Score=140.52 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
...+...++|||+|||+++++++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++||+..+..|+|++|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 87 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 87 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEE
Confidence 44567789999999999999999999999996 99999999999999999999999999999999943468899999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99965443
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.8e-21 Score=143.58 Aligned_cols=90 Identities=34% Similarity=0.572 Sum_probs=81.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.......+.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++
T Consensus 4 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 4 GSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34456678899999999999999999999999999999999999999999999999999999999999885 57799999
Q ss_pred eEEEEccCCCC
Q 043732 84 ANCNLAHLGRT 94 (249)
Q Consensus 84 l~V~~a~~~~~ 94 (249)
|+|++++.+..
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999965543
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=142.32 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=81.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
...+....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3456677899999999999999999999999999999999999999999999999999999999999986 577999999
Q ss_pred EEEEccCCCC
Q 043732 85 NCNLAHLGRT 94 (249)
Q Consensus 85 ~V~~a~~~~~ 94 (249)
+|+++..+..
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999965443
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=143.49 Aligned_cols=90 Identities=27% Similarity=0.432 Sum_probs=81.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
...+....++|||+||++++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3456677899999999999999999999999999999999999999999999999999999999999975 578999999
Q ss_pred EEEEccCCCCC
Q 043732 85 NCNLAHLGRTR 95 (249)
Q Consensus 85 ~V~~a~~~~~~ 95 (249)
+|++++.++.+
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999765443
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7e-21 Score=144.12 Aligned_cols=90 Identities=23% Similarity=0.403 Sum_probs=81.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-------CCe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-------SPM 78 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-------~~~ 78 (249)
........++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3456677899999999999999999999999999999999999999999999999999999999999985 466
Q ss_pred eCCeEeEEEEccCCCCC
Q 043732 79 IGGRKANCNLAHLGRTR 95 (249)
Q Consensus 79 i~Gr~l~V~~a~~~~~~ 95 (249)
|+|++|+|+++..+..+
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999765443
No 20
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=140.36 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999876 56799999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..++.
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99965543
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.2e-21 Score=139.84 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEA-VVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
...++|||+|||.++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 567899999999999999999999999999999 99999899999999999999999999999986 5779999999999
Q ss_pred ccCCCCC
Q 043732 89 AHLGRTR 95 (249)
Q Consensus 89 a~~~~~~ 95 (249)
+..+..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9655543
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=140.89 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=80.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.........++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 334566778999999999999999999999999999999999998 5999999999999999999999975 57899999
Q ss_pred eEEEEccCCCCC
Q 043732 84 ANCNLAHLGRTR 95 (249)
Q Consensus 84 l~V~~a~~~~~~ 95 (249)
|+|++++....+
T Consensus 86 l~v~~a~~~~~~ 97 (114)
T 2do0_A 86 MHVKMDERALPK 97 (114)
T ss_dssp CEEEECSCCCCC
T ss_pred EEEEEcccCCCC
Confidence 999999654443
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=142.30 Aligned_cols=90 Identities=23% Similarity=0.385 Sum_probs=81.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEec-CCCCCcccEEEEEEcCHHHHHHHHhCC--CCeeCC
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITH-KNTGRSKGYGFVTFRDPGSALRACANP--SPMIGG 81 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d-~~tg~~kG~gFV~F~~~e~A~~Al~~~--~~~i~G 81 (249)
.....+...++|||+|||+++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ +..|+|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34556778899999999999999999999999999999999999 789999999999999999999999986 577999
Q ss_pred eEeEEEEccCCCC
Q 043732 82 RKANCNLAHLGRT 94 (249)
Q Consensus 82 r~l~V~~a~~~~~ 94 (249)
++|+|+++..+..
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999965544
No 24
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=137.66 Aligned_cols=83 Identities=37% Similarity=0.580 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
...++|||+||+.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999999999999999999999999999975 57799999999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
..+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6544
No 25
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=140.15 Aligned_cols=87 Identities=20% Similarity=0.418 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCC-CCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNT-GRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
...+...++|||+||++++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++||+..+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34566789999999999999999999999999 999999999988 9999999999999999999993346789999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|+++..+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999965544
No 26
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=143.89 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=82.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDIL--------EAVVITHKNTGRSKGYGFVTFRDPGSALRACANP- 75 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~- 75 (249)
....++...++|||+||++++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 7 GDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 4456778899999999999999999999999999999 6999999999999999999999999999999985
Q ss_pred CCeeCCeEeEEEEccCCCC
Q 043732 76 SPMIGGRKANCNLAHLGRT 94 (249)
Q Consensus 76 ~~~i~Gr~l~V~~a~~~~~ 94 (249)
+..|+|++|+|++++.+..
T Consensus 87 g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TCEETTEECEEECSSCCCC
T ss_pred CCccCCCEEEEEECCCCCC
Confidence 5789999999999965543
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=138.62 Aligned_cols=86 Identities=21% Similarity=0.412 Sum_probs=79.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
+........++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 44556778899999999999999999999999999999999999999999999999999999999999876 57799999
Q ss_pred eEEEEcc
Q 043732 84 ANCNLAH 90 (249)
Q Consensus 84 l~V~~a~ 90 (249)
|+|++|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999983
No 28
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=147.25 Aligned_cols=88 Identities=30% Similarity=0.439 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
.++...++|||+||++++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45667799999999999999999999999999999999999999999999999999999999999986 46799999999
Q ss_pred EEccCCCCC
Q 043732 87 NLAHLGRTR 95 (249)
Q Consensus 87 ~~a~~~~~~ 95 (249)
++++.+..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999765443
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=143.00 Aligned_cols=85 Identities=31% Similarity=0.540 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
+....++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677899999999999999999999999999999999998 8999999999999999999999986 577999999999
Q ss_pred EccCCCC
Q 043732 88 LAHLGRT 94 (249)
Q Consensus 88 ~a~~~~~ 94 (249)
+++.+..
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9965443
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=138.68 Aligned_cols=85 Identities=26% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCC---CCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKN---TGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
....++|||+||++++++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35678999999999999999999999999999999999876 6799999999999999999999986 5789999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|++++.+..
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999965443
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.7e-20 Score=140.93 Aligned_cols=90 Identities=28% Similarity=0.408 Sum_probs=81.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee---C
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI---G 80 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i---~ 80 (249)
.....+...++|||+||+.++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..+ +
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 34556788899999999999999999999999999999999999999999999999999999999999986 4566 8
Q ss_pred CeEeEEEEccCCCC
Q 043732 81 GRKANCNLAHLGRT 94 (249)
Q Consensus 81 Gr~l~V~~a~~~~~ 94 (249)
|++|+|+++..++.
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999965443
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=138.81 Aligned_cols=90 Identities=29% Similarity=0.425 Sum_probs=80.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.....+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.+ +..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 33456678899999999999999999999999999999999998 7999999999999999999999985 57799999
Q ss_pred eEEEEccCCCCCC
Q 043732 84 ANCNLAHLGRTRP 96 (249)
Q Consensus 84 l~V~~a~~~~~~~ 96 (249)
|+|+++..+..+.
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 85 LYVALAQRKEERQ 97 (103)
T ss_dssp CEEEECSSCCCCC
T ss_pred EEEEEecccccCC
Confidence 9999997655443
No 33
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=144.33 Aligned_cols=83 Identities=37% Similarity=0.625 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
..++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999999966789999999999965
Q ss_pred CCC
Q 043732 92 GRT 94 (249)
Q Consensus 92 ~~~ 94 (249)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.5e-20 Score=137.19 Aligned_cols=89 Identities=33% Similarity=0.512 Sum_probs=79.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.....+...++|||+|||+++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3456678889999999999999999999999999999999999864 38999999999999999999985 57899999
Q ss_pred eEEEEccCCCCC
Q 043732 84 ANCNLAHLGRTR 95 (249)
Q Consensus 84 l~V~~a~~~~~~ 95 (249)
|+|+++..+..+
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 999999765443
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=137.32 Aligned_cols=88 Identities=26% Similarity=0.350 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
...++...++|||+|||+++++++|+++|++||.|++|+|++|+.+ ++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456778899999999999999999999999999999999998643 6899999999999999999975 577999999
Q ss_pred EEEEccCCCCC
Q 043732 85 NCNLAHLGRTR 95 (249)
Q Consensus 85 ~V~~a~~~~~~ 95 (249)
+|++++.+..+
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999765443
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=5.1e-20 Score=132.12 Aligned_cols=80 Identities=34% Similarity=0.491 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHL 91 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~ 91 (249)
.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999999999999999999999999999999985 5789999999999964
Q ss_pred C
Q 043732 92 G 92 (249)
Q Consensus 92 ~ 92 (249)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=149.35 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CC----e
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILE--AVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SP----M 78 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~----~ 78 (249)
....+...++|||+||+++++|++|+++|++||.|++ |+|++|+.++++||||||+|.+. +|++||+.+ +. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3455677899999999999999999999999999976 99999999999999999999999 999999986 46 8
Q ss_pred eCCeEeEEEEccCCCCC
Q 043732 79 IGGRKANCNLAHLGRTR 95 (249)
Q Consensus 79 i~Gr~l~V~~a~~~~~~ 95 (249)
|+|++|+|++++.++.+
T Consensus 95 ~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGGCCCCCEECCCSCCC
T ss_pred CCCEEEEEEECCCCCCC
Confidence 99999999999765443
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=134.04 Aligned_cols=81 Identities=35% Similarity=0.536 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
.+.++|||+||+.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999985 57899999999999
Q ss_pred cC
Q 043732 90 HL 91 (249)
Q Consensus 90 ~~ 91 (249)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=136.27 Aligned_cols=86 Identities=19% Similarity=0.390 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456778999999999999999999999999999999999998 8999999999999999999999885 5779999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++.+.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99996544
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=135.41 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=78.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
........++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3455667899999999999999999999999999999999999999999999999999999999999986 577999999
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999985
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=3e-20 Score=142.36 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
..++|||+|||++++|++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.+ +..|+|++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999986 458999999999999999999985 578999999999997
Q ss_pred CCCC
Q 043732 91 LGRT 94 (249)
Q Consensus 91 ~~~~ 94 (249)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 5544
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=138.85 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+||++++++++|+++|++||.|++|.|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999975 57899999999
Q ss_pred EEccCCC
Q 043732 87 NLAHLGR 93 (249)
Q Consensus 87 ~~a~~~~ 93 (249)
+++..+.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9996543
No 43
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=137.95 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILE-AVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
.......++|||+|||+++++++|+++|++||.|.+ |+|++| .+++++|||||+|.+.++|++||+.++..|+||.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 345567899999999999999999999999999987 888888 689999999999999999999999966889999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|.++..+
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9998543
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=8e-20 Score=137.06 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCC---eE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGG---RK 83 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~G---r~ 83 (249)
......++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345568999999999999999999999999999999999998 7999999999999999999999986 466777 99
Q ss_pred eEEEEccCCCCC
Q 043732 84 ANCNLAHLGRTR 95 (249)
Q Consensus 84 l~V~~a~~~~~~ 95 (249)
|+|++++.+..+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999765543
No 45
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=139.30 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
.......++|||+|||++++|++|+++|++|| +++|+|++|+ ++++||||||+|++.++|++||+.++..|++|.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 34567789999999999999999999999999 4599999998 899999999999999999999976567899999999
Q ss_pred EEccC
Q 043732 87 NLAHL 91 (249)
Q Consensus 87 ~~a~~ 91 (249)
.++..
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99853
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=5e-21 Score=140.23 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=70.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFG--DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
.+|||+||++++++++|+++|++|| .|++|++++|+.++++||||||+|.+.++|++||+.+ +..|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999999999999999999999999999999886 578999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 47
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=137.32 Aligned_cols=86 Identities=17% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEE-ecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGD-ILEAVVI-THKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~ 83 (249)
...+.++|||+|||+++++++|+++|++||. |++|.++ .++.+++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3456899999999999999999999999998 9999998 888899999999999999999999999873 5799999
Q ss_pred eEEEEccCCCC
Q 043732 84 ANCNLAHLGRT 94 (249)
Q Consensus 84 l~V~~a~~~~~ 94 (249)
|+|+++..+..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999976544
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=135.97 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE-EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE--
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDIL-EAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK-- 83 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~-- 83 (249)
......++|||+|||+++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 9999999999999999999999999999999986 57799999
Q ss_pred --eEEEEccCC
Q 043732 84 --ANCNLAHLG 92 (249)
Q Consensus 84 --l~V~~a~~~ 92 (249)
|+|++++..
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999999543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5e-20 Score=132.76 Aligned_cols=82 Identities=33% Similarity=0.489 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.+.+.++|||+|||.++++++|+++|++||.|++|++++|+.+++++|||||+|.+.++|++|++.+ +..|+|++|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999875 678999999999
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
+|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 983
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=137.72 Aligned_cols=86 Identities=27% Similarity=0.435 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe-eCCeEe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQ-FGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM-IGGRKA 84 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~-i~Gr~l 84 (249)
.+....++|||+||++++++++|+++|++ ||.|++|+|++|+ +++++|||||+|.+.++|++||+.+ +.. |+|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567799999999999999999999999 9999999999998 8999999999999999999999976 567 999999
Q ss_pred EEEEccCCCC
Q 043732 85 NCNLAHLGRT 94 (249)
Q Consensus 85 ~V~~a~~~~~ 94 (249)
+|+++..+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999965543
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.6e-20 Score=141.91 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
.++...++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34667799999999999999999999999999999999999999999999999999999999999986 57899999999
Q ss_pred EEc
Q 043732 87 NLA 89 (249)
Q Consensus 87 ~~a 89 (249)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 998
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=8.8e-20 Score=132.55 Aligned_cols=81 Identities=20% Similarity=0.438 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
.+.++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+..+..|+|++|+|++++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 35689999999999999999999999999999999999999999999999999999999999435688999999999995
Q ss_pred C
Q 043732 91 L 91 (249)
Q Consensus 91 ~ 91 (249)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=4.4e-20 Score=139.76 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567789999999999999999999999999999999999999999999999999999999999975 5789999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|+++..+..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999975543
No 54
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=138.85 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
-..+...++|||+|||+++++++|+++|++||.|++|.|++|+. +++||||||+|.+.++|++||+..+..|+|+.|.|
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V 83 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI 83 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999987 99999999999999999999995568899999999
Q ss_pred EEccC
Q 043732 87 NLAHL 91 (249)
Q Consensus 87 ~~a~~ 91 (249)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99853
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.4e-20 Score=143.65 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+||++++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345667889999999999999999999999999999999999999999999999999999999999875 5789999999
Q ss_pred EEEccCCCCCC
Q 043732 86 CNLAHLGRTRP 96 (249)
Q Consensus 86 V~~a~~~~~~~ 96 (249)
|+++..+..+.
T Consensus 96 v~~a~~~~~~~ 106 (126)
T 3ex7_B 96 VDWCFVRGPPK 106 (126)
T ss_dssp EEESEESSSCC
T ss_pred EEEecCCCCCC
Confidence 99997665543
No 56
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=134.35 Aligned_cols=84 Identities=27% Similarity=0.418 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
....+...++|||+|||+++++++|+++|++||+|++|+|++++. ++++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345667789999999999999999999999999999999999986 999999999999999999999975 578999999
Q ss_pred EEEEcc
Q 043732 85 NCNLAH 90 (249)
Q Consensus 85 ~V~~a~ 90 (249)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999985
No 57
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=132.77 Aligned_cols=76 Identities=37% Similarity=0.719 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
++|||+|||.++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999888899999999987
No 58
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.6e-19 Score=145.11 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||++++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999986 578999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
++...+
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 996543
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1e-19 Score=134.59 Aligned_cols=81 Identities=25% Similarity=0.517 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHL 91 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~ 91 (249)
.++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 689999999999999999999999999999999999999999999999999999999999885 5789999999999965
Q ss_pred CC
Q 043732 92 GR 93 (249)
Q Consensus 92 ~~ 93 (249)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=3.4e-20 Score=145.18 Aligned_cols=87 Identities=25% Similarity=0.398 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 45567789999999999999999999999999999999999999999999999999999999999985 57799999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..+++
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99976543
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-20 Score=139.42 Aligned_cols=80 Identities=11% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC---CCeeCCeEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP---SPMIGGRKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~---~~~i~Gr~l~ 85 (249)
.+...++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ +.+|+|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4677899999999999999999999999999999999865 689999999999999999964 2679999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|++++.+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999965543
No 62
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.5e-20 Score=146.15 Aligned_cols=89 Identities=28% Similarity=0.469 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
..+....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445566789999999999999999999999999999999999999999999999999999999999986 5779999999
Q ss_pred EEEccCCCCC
Q 043732 86 CNLAHLGRTR 95 (249)
Q Consensus 86 V~~a~~~~~~ 95 (249)
|++++.++.+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999765543
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=134.81 Aligned_cols=85 Identities=29% Similarity=0.402 Sum_probs=78.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILE--------AVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S 76 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~ 76 (249)
........++|||+||++++++++|+++|++||.|++ |++++|+.+++++|||||+|.+.++|++||+.+ +
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456677899999999999999999999999999999 999999999999999999999999999999975 5
Q ss_pred CeeCCeEeEEEEcc
Q 043732 77 PMIGGRKANCNLAH 90 (249)
Q Consensus 77 ~~i~Gr~l~V~~a~ 90 (249)
..|+|++|+|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 78999999999983
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-20 Score=136.16 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 86 (249)
......++|||+|||+++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999998864 7899999999
Q ss_pred EEcc
Q 043732 87 NLAH 90 (249)
Q Consensus 87 ~~a~ 90 (249)
+++.
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9995
No 65
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.9e-19 Score=139.10 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
..++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+..+..|+|+.|+|++++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35899999999999999999999999999999999999999999999999999999999994346789999999999964
Q ss_pred CC
Q 043732 92 GR 93 (249)
Q Consensus 92 ~~ 93 (249)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=146.69 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFG--DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
..++|||+||++++++++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999999999999999999999999999996 5789999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 953
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=135.62 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+||++++++++|+++|++||.|++|+|..+ ++++|||||+|++.++|++||+.+ +..|+|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45667799999999999999999999999999999999654 568999999999999999999885 57899999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
++++.++.
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99965443
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=131.62 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCC-cccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGR-SKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~-~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
...++|||+||+.++++++|+++|++||.|.+|++++++.++. ++|||||+|.+.++|++|++.+ +..|+|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999987766 8999999999999999999985 6789999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+...+
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 96543
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.6e-20 Score=140.15 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDI-LEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
..+...++|||+|||+++++++|+++|+.||.| .+|+|++|+ +++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 456678999999999999999999999999999 889999998 899999999999999999999999667899999999
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
.++..+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999644
No 70
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-20 Score=143.91 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||...+..|+|+.|+|+++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34579999999999999999999999999999999999999999999999999999999999335678999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
.+.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 544
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=4.1e-20 Score=130.37 Aligned_cols=75 Identities=36% Similarity=0.701 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
+|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++..+..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999995568899999999875
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=1.8e-19 Score=131.82 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+|||+++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999985 6899999999999999999999985 57799999999
Q ss_pred EEccCCC
Q 043732 87 NLAHLGR 93 (249)
Q Consensus 87 ~~a~~~~ 93 (249)
++++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9996443
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=136.11 Aligned_cols=86 Identities=33% Similarity=0.541 Sum_probs=79.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
...+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 455777899999999999999999999999999999999999999999999999999999999999975 5779999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|++++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999543
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-20 Score=138.65 Aligned_cols=87 Identities=28% Similarity=0.552 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+||+.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999876 57799999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..+..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99965543
No 75
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=2.3e-19 Score=134.99 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4456678999999999999999999999999999999999998 8999999999999999999999985 6789999999
Q ss_pred EEEcc
Q 043732 86 CNLAH 90 (249)
Q Consensus 86 V~~a~ 90 (249)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 76
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=3.2e-20 Score=130.80 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
+|||+|||.++++++|+++|++||.|++|.+++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998788899999999876
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-19 Score=132.97 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCC---
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGG--- 81 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~G--- 81 (249)
+.......++|||+|||+++++++|+++|++||+|++|+|++| |||||+|.+.++|++||+.++ .+|+|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 3455677899999999999999999999999999999999876 899999999999999999864 67999
Q ss_pred --eEeEEEEccCCC
Q 043732 82 --RKANCNLAHLGR 93 (249)
Q Consensus 82 --r~l~V~~a~~~~ 93 (249)
+.|+|++++.+.
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999996543
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=129.52 Aligned_cols=83 Identities=14% Similarity=0.307 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+|||+++++++|+++|+.| .|++|+|+++ .+++++|||||+|.+.++|++||+ + +..|+|+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3456778999999999999999999999999 9999999999 689999999999999999999999 6 4679999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|.+++.+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9999544
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=133.46 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC---CCeeCCeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP---SPMIGGRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~---~~~i~Gr~ 83 (249)
.......++|||+||++++++++|+++|++||.|++|.++++ ||||||+|++.++|++||+.+ +.+|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 345567789999999999999999999999999999998865 789999999999999999974 36799999
Q ss_pred eEEEEccCCCCC
Q 043732 84 ANCNLAHLGRTR 95 (249)
Q Consensus 84 l~V~~a~~~~~~ 95 (249)
|+|.+++.+..+
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999755443
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.1e-19 Score=144.30 Aligned_cols=87 Identities=29% Similarity=0.480 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999999986 567999999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
++..++.+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99765443
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=5.5e-20 Score=137.49 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCC------CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCC-
Q 043732 10 DSANRKLFVGGLAW------ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGG- 81 (249)
Q Consensus 10 ~~~~~~lfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~G- 81 (249)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.+ +..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 9999999999999999999999999999999999999999999999999985 577999
Q ss_pred eEeEEEEccC
Q 043732 82 RKANCNLAHL 91 (249)
Q Consensus 82 r~l~V~~a~~ 91 (249)
+.|+|+++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999964
No 82
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=5.4e-20 Score=135.43 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+|||+++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 3455799999999999999999999999999999999999999999999999999999999999975 578999999999
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 884
No 83
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=139.97 Aligned_cols=83 Identities=33% Similarity=0.490 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
...+...++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999998865 679999999
Q ss_pred EEEc
Q 043732 86 CNLA 89 (249)
Q Consensus 86 V~~a 89 (249)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9976
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=131.99 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.+.+...++|||+|||+++++++|+++|++||.| +++++ .+++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4467788999999999999999999999999977 56666 57999999999999999999999976 5679999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++.+.
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99996543
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=136.62 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=77.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHH---HHHhhCCCEEEEEEEecCCCC---CcccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLR---TYFEQFGDILEAVVITHKNTG---RSKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg---~~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
........++|||+|||+++++++|+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.+ +..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34456678999999999999999999 999999999999999988754 45699999999999999999985 577
Q ss_pred eCCeEeEEEEccCCC
Q 043732 79 IGGRKANCNLAHLGR 93 (249)
Q Consensus 79 i~Gr~l~V~~a~~~~ 93 (249)
|+|++|+|++|..+.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999996443
No 86
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=131.06 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLR----TYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
...+.++|||+||++++++++|+ ++|++||+|++|+|++|+.+ ||||||+|.+.++|++||+.+ +..|+|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999999875 899999999999999999986 56799999
Q ss_pred eEEEEccCC
Q 043732 84 ANCNLAHLG 92 (249)
Q Consensus 84 l~V~~a~~~ 92 (249)
|+|++|+.+
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999999543
No 87
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.9e-19 Score=134.36 Aligned_cols=85 Identities=28% Similarity=0.519 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
..+...++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|++.++|++||+ .+..|+|++|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345567999999999999999999999999999999999998 89999999999999999999999 7788999999999
Q ss_pred EccCCCC
Q 043732 88 LAHLGRT 94 (249)
Q Consensus 88 ~a~~~~~ 94 (249)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9975543
No 88
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.6e-19 Score=137.86 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGD---ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
.+..+.++|||+|||+++++++|+++|+.||. |++|+|++|+. +++||||||+|++.++|++||+..+..|+||.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 45667899999999999999999999999999 89999999987 999999999999999999999954677999999
Q ss_pred EEEEccC
Q 043732 85 NCNLAHL 91 (249)
Q Consensus 85 ~V~~a~~ 91 (249)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999853
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=135.45 Aligned_cols=84 Identities=23% Similarity=0.447 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecC-CCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHK-NTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3456789999999999999999999999999 9999999998 6899999999999999999999944567899999999
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
++++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999543
No 90
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.2e-19 Score=142.00 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGD---ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~ 83 (249)
..+..+.++|||+|||+++++++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+..+..|+||.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 345667899999999999999999999999999 89999999987 99999999999999999999994357799999
Q ss_pred eEEEEccC
Q 043732 84 ANCNLAHL 91 (249)
Q Consensus 84 l~V~~a~~ 91 (249)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999853
No 91
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=3.2e-19 Score=152.74 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFG--DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNL 88 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 88 (249)
..++|||+||++++++++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999875 789999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 953
No 92
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.3e-19 Score=143.58 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+||++++++++|+++|++||.|++|.|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999985 57799999999
Q ss_pred EEccCCCCCC
Q 043732 87 NLAHLGRTRP 96 (249)
Q Consensus 87 ~~a~~~~~~~ 96 (249)
.++..+..+.
T Consensus 147 ~~a~~~~~~~ 156 (165)
T 1rk8_A 147 DWCFVKGPKR 156 (165)
T ss_dssp EESEECC---
T ss_pred EEecCCCCCC
Confidence 9997665443
No 93
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=131.21 Aligned_cols=84 Identities=31% Similarity=0.471 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+||++++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4566788999999999999999999999977 46888899889999999999999999999999975 5789999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++.+.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99996544
No 94
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.5e-19 Score=139.96 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDIL--EAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANC 86 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 86 (249)
.....++|||+|||++++|++|+++|+.| .|+ +|+|++|+. |++||||||+|+++++|++||+.++..|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 44567899999999999999999999999 677 899999987 99999999999999999999998888899999999
Q ss_pred EEccC
Q 043732 87 NLAHL 91 (249)
Q Consensus 87 ~~a~~ 91 (249)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98853
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1e-18 Score=135.11 Aligned_cols=84 Identities=25% Similarity=0.364 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||+.++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999998 8999999999999999999999975 567999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
+|....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 996543
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-20 Score=132.32 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356789999999999999999999999999999999999999999999999999999999999986 4679999888776
Q ss_pred c
Q 043732 89 A 89 (249)
Q Consensus 89 a 89 (249)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 97
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=1.8e-18 Score=129.49 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
+.......++|||+||++++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.+ +..|+|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 44556778999999999999999999999999999999886 459999999999999999985 577999999
Q ss_pred EEEEccCCCCCC
Q 043732 85 NCNLAHLGRTRP 96 (249)
Q Consensus 85 ~V~~a~~~~~~~ 96 (249)
+|+++..+..+.
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999997655443
No 98
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=135.25 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
..+.++|||+|||+++++++|+++|+.| .|++|+|++|+. |+++|||||+|.++++|++||+..+..|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3446899999999999999999999999 899999999986 99999999999999999999976678899999999988
Q ss_pred c
Q 043732 90 H 90 (249)
Q Consensus 90 ~ 90 (249)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=126.29 Aligned_cols=79 Identities=33% Similarity=0.506 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+||++++++++|+++|++||.|++|+++ ||||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 356788999999999999999999999999999999987 679999999999999999886 56799999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
++++.+..
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99965543
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1e-19 Score=132.77 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~~ 92 (249)
++|||+||+.++++++|+++|++||+|++|++++++.+++++|||||+|.+.+ |++|++.+ +..|+|++|+|++|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999997 47799999999999654
Q ss_pred C
Q 043732 93 R 93 (249)
Q Consensus 93 ~ 93 (249)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 101
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.3e-18 Score=143.09 Aligned_cols=92 Identities=34% Similarity=0.542 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeC
Q 043732 1 MAGAYGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIG 80 (249)
Q Consensus 1 m~g~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~ 80 (249)
|.......+....++|||+|||+++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+
T Consensus 1 ms~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 80 (196)
T 1l3k_A 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD 80 (196)
T ss_dssp -------CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEET
T ss_pred CCcccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEEC
Confidence 44445566778889999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred CeEeEEEEccCC
Q 043732 81 GRKANCNLAHLG 92 (249)
Q Consensus 81 Gr~l~V~~a~~~ 92 (249)
|+.|.|.++...
T Consensus 81 g~~l~v~~~~~~ 92 (196)
T 1l3k_A 81 GRVVEPKRAVSR 92 (196)
T ss_dssp TEECEEEECCC-
T ss_pred CEEeeeecccCc
Confidence 999999999654
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=132.45 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeEe
Q 043732 9 ADSANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRKA 84 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~l 84 (249)
.....++|||+|||+ +++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345678999999999 9999999999999999999999865 4799999999999999999863 46999999
Q ss_pred EEEEccCC
Q 043732 85 NCNLAHLG 92 (249)
Q Consensus 85 ~V~~a~~~ 92 (249)
+|.+|+..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999643
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=130.45 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~~ 92 (249)
++|||+|||+++++++|+++|++||+|++|+++++ ++|||||+|.+.++|++||+.+ +..|+|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 6899999999999999999986 57899999999999765
Q ss_pred CC
Q 043732 93 RT 94 (249)
Q Consensus 93 ~~ 94 (249)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=135.75 Aligned_cols=81 Identities=12% Similarity=0.235 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 85 (249)
.....++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4556789999999999999999999999999999999875 7899999999999999999763 579999999
Q ss_pred EEEccCCCCC
Q 043732 86 CNLAHLGRTR 95 (249)
Q Consensus 86 V~~a~~~~~~ 95 (249)
|.+++.+..+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999655443
No 105
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.7e-18 Score=142.40 Aligned_cols=87 Identities=29% Similarity=0.526 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEc
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLA 89 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a 89 (249)
....++|||+|||+++++++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|.|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cCCCCCC
Q 043732 90 HLGRTRP 96 (249)
Q Consensus 90 ~~~~~~~ 96 (249)
..+....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 7665543
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=123.48 Aligned_cols=80 Identities=26% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCCe
Q 043732 5 YGAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-PMIGGR 82 (249)
Q Consensus 5 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~Gr 82 (249)
.....+...++|||+|||.++++++|+++|++||.|++|+++++ ||||||+|.+.++|++|++.+ + ..|+|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 44566788899999999999999999999999999999999864 789999999999999999986 5 679999
Q ss_pred EeEEEEcc
Q 043732 83 KANCNLAH 90 (249)
Q Consensus 83 ~l~V~~a~ 90 (249)
+|+|++|+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999983
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-19 Score=135.79 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||++++++++|+++|++||.|.++.+..+..+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999954433333237899999999999999999999986 577999999999
Q ss_pred EccCCCCC
Q 043732 88 LAHLGRTR 95 (249)
Q Consensus 88 ~a~~~~~~ 95 (249)
++..++.+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99765543
No 108
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-19 Score=137.69 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
.....++|||+|||+++++++|+++|+.||.|+++.++.++.+++++|||||+|.+.++|++||+..+..|+|+.|+|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999999987777787899999999999999999999999445779999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 954
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=130.00 Aligned_cols=82 Identities=23% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~ 83 (249)
.......++|||+||+++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++|++.++ ..|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 344566799999999999999999999999999999998754 7899999999999999999752 4599999
Q ss_pred eEEEEccCCCC
Q 043732 84 ANCNLAHLGRT 94 (249)
Q Consensus 84 l~V~~a~~~~~ 94 (249)
|+|.+++.+..
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999965443
No 110
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=132.40 Aligned_cols=84 Identities=35% Similarity=0.557 Sum_probs=76.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
..+.+...++|||+||+.++++++|+++|++||+|++|++++|+ ++++|||||+|.+.++|++|++.+ +..|+|++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45567788999999999999999999999999999999999886 458999999999999999999985 578999999
Q ss_pred EEEEccC
Q 043732 85 NCNLAHL 91 (249)
Q Consensus 85 ~V~~a~~ 91 (249)
+|++++.
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999954
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=132.05 Aligned_cols=83 Identities=14% Similarity=0.386 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee------
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI------ 79 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i------ 79 (249)
...+...++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3456678999999999999999999999999999999999998 8999999999999999999999976 4567
Q ss_pred --CCeEeEEEEcc
Q 043732 80 --GGRKANCNLAH 90 (249)
Q Consensus 80 --~Gr~l~V~~a~ 90 (249)
.+++|.|+++.
T Consensus 98 ~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 98 SAPTEPLLCKFSG 110 (114)
T ss_dssp CCCSSCBEEEECC
T ss_pred cCCCCceeEEccC
Confidence 57889999995
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=129.97 Aligned_cols=80 Identities=29% Similarity=0.491 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.+...++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4566899999999999999999999999999999999876 789999999999999999885 578999999999
Q ss_pred EccCCCC
Q 043732 88 LAHLGRT 94 (249)
Q Consensus 88 ~a~~~~~ 94 (249)
+++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9965443
No 113
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-19 Score=134.66 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||++++++++|+++|++||.|.+ .+++++.+++++|||||+|.+.++|++||+ + +..|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456889999999999999999999999999988 777887889999999999999999999999 6 577999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
++..+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 996544
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=134.50 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGD---ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~ 83 (249)
..+....++|||+|||+++++++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++||+..+..|+|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 455678899999999999999999999999998 89999999987 99999999999999999999995457799999
Q ss_pred eEEEEccC
Q 043732 84 ANCNLAHL 91 (249)
Q Consensus 84 l~V~~a~~ 91 (249)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999854
No 115
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=129.98 Aligned_cols=79 Identities=24% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-C--eeCCeEe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-P--MIGGRKA 84 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~--~i~Gr~l 84 (249)
.....+++|||+|||+++++++|+++|++||.|++|++++ .||||||+|++.++|++||+.++ . .|+||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456789999999999999999999999999999999975 36899999999999999999864 3 4899999
Q ss_pred EEEEccCC
Q 043732 85 NCNLAHLG 92 (249)
Q Consensus 85 ~V~~a~~~ 92 (249)
+|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999644
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=129.73 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee
Q 043732 7 AEADSANRKLFVGGLAWET------NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI 79 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i 79 (249)
...+...++|||+|||+++ ++++|+++|++||.|++|.|+ +.+|+++|||||+|.+.++|++||+.+ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3455668899999999999 789999999999999999988 467999999999999999999999986 4679
Q ss_pred CCe-EeEEEEccC
Q 043732 80 GGR-KANCNLAHL 91 (249)
Q Consensus 80 ~Gr-~l~V~~a~~ 91 (249)
+|+ +|+|+++..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 998 999999953
No 117
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4e-20 Score=141.45 Aligned_cols=86 Identities=29% Similarity=0.397 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILE--------AVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
+++.+.++|||+||++++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.+ +..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 45677899999999999999999999999999998 999999989999999999999999999999986 477
Q ss_pred eCCeEeEEEEccCCC
Q 043732 79 IGGRKANCNLAHLGR 93 (249)
Q Consensus 79 i~Gr~l~V~~a~~~~ 93 (249)
|+|++|+|++++.+.
T Consensus 82 ~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 FSGNPIKVSFATRRA 96 (116)
Confidence 999999999996543
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=136.19 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE----EEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDI----LEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
..+.++|||+|||+++++++|+++|++||.| .+|.|++|+ ++++||||||+|++.++|++||+.++..|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999976 689999985 79999999999999999999999877889999999
Q ss_pred EEEcc
Q 043732 86 CNLAH 90 (249)
Q Consensus 86 V~~a~ 90 (249)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 99885
No 119
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=3.8e-18 Score=143.59 Aligned_cols=86 Identities=27% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..+.|+.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 334556789999999999999999999999999999999999999999999999999999999999986 4779999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|.++...
T Consensus 89 ~~~~~~~ 95 (213)
T 4f02_A 89 IMWSQRD 95 (213)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 9998543
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=124.17 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+||++++++++|+++|++||.|++|++++ +||||+|++.++|++||+.+ +..|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 45567789999999999999999999999999999999973 49999999999999999985 5779999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++.+.
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 99996544
No 121
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=123.18 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
.....++|||+||++++++++|+++|++||.|++| +.++.+++ ||||+|.+.++|++||+..+..|+|+.|+|++
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 34567899999999999999999999999999987 66766665 99999999999999999335789999999998
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 85443
No 122
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=3.8e-19 Score=141.21 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNL 88 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 88 (249)
.....++|||+|||++++|++|+++|++|| |++|+|++|+. +++||||||+|++.++|++||+.++.+|+||.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 77999999986 9999999999999999999995556789999999999
Q ss_pred ccCC
Q 043732 89 AHLG 92 (249)
Q Consensus 89 a~~~ 92 (249)
+..+
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8543
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=126.54 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
........++|||+|||+++++++|+++|++||+|++|+++++ ||||||+|.+.++|++||+.+ +..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3445667889999999999999999999999999999999754 789999999999999999885 577999999
Q ss_pred EEEEccCC
Q 043732 85 NCNLAHLG 92 (249)
Q Consensus 85 ~V~~a~~~ 92 (249)
+|++++.+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99999644
No 124
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=125.34 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCCeEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGD-ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-PMIGGRKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~Gr~l~ 85 (249)
.+...++|||+||++++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.+ + ..|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567899999999999999999999999999 5555552 4789999999999999999985 5 679999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|++++.+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999965544
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3e-18 Score=125.12 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~a 89 (249)
..+..|||+||++.+||++|+++|++||+|+++++.. +||||||+|.++++|++|++.|+ ..++||.|+|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999865 58999999999999999999975 6799999999998
Q ss_pred c
Q 043732 90 H 90 (249)
Q Consensus 90 ~ 90 (249)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=124.39 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC--CeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG--GRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~--Gr~ 83 (249)
.......++|||+||++++++++|+++|++||.|++|+++++ +|||||+|.+.++|++||+.+ +..|+ |++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 345567799999999999999999999999999999998754 789999999999999999985 57798 999
Q ss_pred eEEEEccCCC
Q 043732 84 ANCNLAHLGR 93 (249)
Q Consensus 84 l~V~~a~~~~ 93 (249)
|+|++++.+.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999996543
No 127
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=4.5e-18 Score=124.57 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
......++|||+|||++++|++|+++|++||.|++|+|+++ +||||||+|++.++|+++.. ....++|++|.|+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 45677899999999999999999999999999999999864 68999999999999995432 2345789999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
+|.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 996543
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=123.78 Aligned_cols=72 Identities=19% Similarity=0.385 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe-Ee
Q 043732 13 NRKLFVGGLAWET------NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGR-KA 84 (249)
Q Consensus 13 ~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr-~l 84 (249)
+++|||+|||.++ ++++|+++|++||.|++|+++ +.+++++|||||+|.+.++|++||+.+ +..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 779999999999999999987 457999999999999999999999987 4679999 88
Q ss_pred EE
Q 043732 85 NC 86 (249)
Q Consensus 85 ~V 86 (249)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 129
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=122.89 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=69.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQF--GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
.......++|||+||++++++++|+++|++| |.|++|++. +|||||+|.+.++|++||+.+ +..|+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3455678999999999999999999999999 999998774 579999999999999999976 57799999
Q ss_pred eEEEEccCCC
Q 043732 84 ANCNLAHLGR 93 (249)
Q Consensus 84 l~V~~a~~~~ 93 (249)
|+|++++.+.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999996544
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.7e-18 Score=131.21 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
....++|||+|||+++++++|+++|++|| +|+.++|.. .+++|||||+|++.++|++||+.+ +.+|+|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 899998853 347899999999999999999986 567999999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
++..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9953
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=7.8e-18 Score=127.46 Aligned_cols=75 Identities=25% Similarity=0.486 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 11 SANRKLFVGGLAWE-TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
...++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 4789999999999999999885 5789999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+...+
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 96443
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=125.79 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||++++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445589999999999999999999999999996 666654 57899999999999999999885 577999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
+++.++
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 996543
No 133
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=132.05 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLR----TYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGR 82 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr 82 (249)
.+....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.+ +..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345567899999999999999876 6999999999988753 5889999999999999999999986 5779999
Q ss_pred EeEEEEccCC
Q 043732 83 KANCNLAHLG 92 (249)
Q Consensus 83 ~l~V~~a~~~ 92 (249)
+|+|++|+.+
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999644
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=121.42 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+|| ++++++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557789999996 89999999999999999999984 56899999999999999999886 46799999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..+..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99965543
No 135
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=131.04 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNT---GRSKGYGFVTFRDPGSALRACANPSPMIGGRKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 85 (249)
.....++|||+||++++++++|+++|++||.|+ +.++.++.+ |++||||||+|++.++|++||+.+ ..++|+.|.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEE
Confidence 345679999999999999999999999999999 888888877 799999999999999999999988 458999998
Q ss_pred EEEcc
Q 043732 86 CNLAH 90 (249)
Q Consensus 86 V~~a~ 90 (249)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 88664
No 136
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=123.90 Aligned_cols=78 Identities=27% Similarity=0.497 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
...++|||+|||+++++++|+++|++||.|++|+|+++ +||||||+|++.++|++|+.. ...++|++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999999764 689999999999999876544 455799999999996
Q ss_pred CCCC
Q 043732 91 LGRT 94 (249)
Q Consensus 91 ~~~~ 94 (249)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=121.13 Aligned_cols=78 Identities=28% Similarity=0.490 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
..+...++|||+|||+++++++|+++|++||.|++|++++ +||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4567789999999999999999999999999999999973 49999999999999999985 57899999999
Q ss_pred EEccCCC
Q 043732 87 NLAHLGR 93 (249)
Q Consensus 87 ~~a~~~~ 93 (249)
++++.++
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9996553
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.3e-18 Score=126.27 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+||+.++++++|+++|++||.|++|+++ +++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999997 35799999999999999999885 578999999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9853
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=9.4e-18 Score=127.19 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=70.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
...+...++|||+||++++++++|+++|++||.|++|+++ +|||||+|.+.++|++|++.+ +..|+|+.|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4567788999999999999999999999999999999997 689999999999999999985 5789999999
Q ss_pred EEEccCCCC
Q 043732 86 CNLAHLGRT 94 (249)
Q Consensus 86 V~~a~~~~~ 94 (249)
|++++.+..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999965543
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-18 Score=125.39 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 85 (249)
...+...++|||+||+.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456678999999999999999999999999988766 3468899999999999999999999765 779999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|+++..+.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99996443
No 141
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-18 Score=130.24 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC---CeeCCeEeE
Q 043732 10 DSANRKLFVGGLAWE-TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS---PMIGGRKAN 85 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 85 (249)
....++|||+||+++ +++++|+++|++||+|++|.|++ +||||||+|++.++|++||+.++ .+|+||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 37899999999999999999752 469999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|.+++.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99996443
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=6.8e-18 Score=124.52 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLR----TYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
+....++|||+||++++++++|+ ++|++||.|.+|.+++ +++++|||||+|.+.++|++|++.+ +..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 4788999999999999999999985 57899999
Q ss_pred eEEEEccCCC
Q 043732 84 ANCNLAHLGR 93 (249)
Q Consensus 84 l~V~~a~~~~ 93 (249)
|+|+++..+.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999996544
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.4e-17 Score=137.14 Aligned_cols=81 Identities=26% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||++++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998 8999999999999999999999976 5779999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
|..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 954
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=8.2e-17 Score=128.35 Aligned_cols=83 Identities=33% Similarity=0.508 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
......++|||+|||.++++++|+++|++||.|+++.+++++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999975 57899999999
Q ss_pred EEcc
Q 043732 87 NLAH 90 (249)
Q Consensus 87 ~~a~ 90 (249)
++|+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9984
No 145
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.8e-17 Score=126.17 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+|||+++++++|+++|++||.|++|.|+++ ++++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999876 456999999999999999999975 5779999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+..++
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 96543
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=6.2e-17 Score=129.17 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.+ +..++|++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999999999989999999999999999999999975 578999999999996
Q ss_pred CC
Q 043732 91 LG 92 (249)
Q Consensus 91 ~~ 92 (249)
..
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3e-17 Score=127.80 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=70.0
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcC----HHH----HHHHHh--CC-CCe
Q 043732 14 RKLFVGGL----AWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD----PGS----ALRACA--NP-SPM 78 (249)
Q Consensus 14 ~~lfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~----~e~----A~~Al~--~~-~~~ 78 (249)
++|||+|| ++.++|++|+++|+.||+|.+|+++.|+.||+++|||||+|.| +++ |.+|++ .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 899988 65 577
Q ss_pred eCCeEeEEEEccC
Q 043732 79 IGGRKANCNLAHL 91 (249)
Q Consensus 79 i~Gr~l~V~~a~~ 91 (249)
|+|++|+|++-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998743
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.8e-17 Score=119.97 Aligned_cols=76 Identities=22% Similarity=0.448 Sum_probs=68.1
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
......++|||+||++ ++++++|+++|++||.|++|++. +|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999883 789999999999999999986 5779999999
Q ss_pred EEEccC
Q 043732 86 CNLAHL 91 (249)
Q Consensus 86 V~~a~~ 91 (249)
|++++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999953
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=5.1e-17 Score=130.17 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
..++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999975 578999999999996
Q ss_pred CCC
Q 043732 91 LGR 93 (249)
Q Consensus 91 ~~~ 93 (249)
.+.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=123.04 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
......++|||+|||+ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3467789999999998 99999999999999999999984 789999999999999999985 5779999999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|++++.+.
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99996544
No 151
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=7.3e-17 Score=132.76 Aligned_cols=84 Identities=29% Similarity=0.451 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||++++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++|++.+ +..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999999999989999999999999999999999985 5789999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 96543
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=120.72 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEA-VVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
......++|||+|||+++++++|+++|++||.|++| .|++++.+++ |||+|.+.++|++||+.+ +..|+|++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344567899999999999999999999999999999 4888876543 999999999999999975 5789999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|+++.++
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999654
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=1.5e-17 Score=127.36 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE--
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK-- 83 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~-- 83 (249)
+......++|||+||++++++++|+++|++||+|++|.|+.| |||||+|++.++|++||+.+ +.+|+|++
T Consensus 10 pp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 10 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp -------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 344567899999999999999999999999999999999765 89999999999999999986 57799998
Q ss_pred ---eEEEEccC
Q 043732 84 ---ANCNLAHL 91 (249)
Q Consensus 84 ---l~V~~a~~ 91 (249)
|+|+.+..
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 77776643
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.1e-16 Score=149.09 Aligned_cols=84 Identities=24% Similarity=0.464 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+||+++|++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.| +.+|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999886 5789999999999
Q ss_pred ccCCC
Q 043732 89 AHLGR 93 (249)
Q Consensus 89 a~~~~ 93 (249)
+..+.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 96543
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=7.7e-17 Score=134.37 Aligned_cols=82 Identities=26% Similarity=0.456 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999985 57899999999999
Q ss_pred cCC
Q 043732 90 HLG 92 (249)
Q Consensus 90 ~~~ 92 (249)
..+
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=6e-18 Score=133.92 Aligned_cols=87 Identities=21% Similarity=0.354 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE--E---EecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAV--V---ITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGR 82 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~--i---~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr 82 (249)
.....++|||+||++++++++|+++|++||.|.++. + ++...+++++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356678999999999999999999999999987641 1 111246899999999999999999999986 5789999
Q ss_pred EeEEEEccCCCCC
Q 043732 83 KANCNLAHLGRTR 95 (249)
Q Consensus 83 ~l~V~~a~~~~~~ 95 (249)
.|+|.+|+..+.+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999765544
No 157
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.7e-17 Score=132.95 Aligned_cols=81 Identities=31% Similarity=0.589 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
..++|||+||+.++++++|+++|++||.|++|++++|+.+++++|||||+|.+.++|++|++..+..|+|++|+|++|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999999899999999999999999999999545779999999999964
Q ss_pred C
Q 043732 92 G 92 (249)
Q Consensus 92 ~ 92 (249)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=4.3e-17 Score=130.00 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 7 AEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 7 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
.......++|||+||++++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345567899999999999999999999999999999999876 5899999999999999999975 5779999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|+++..+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999543
No 159
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=125.97 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.+.+.++|||+|||.++++++|+++|++||.|++|.|++ ++|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355678999999999999999999999999999998863 5789999999999999999986 577999999999
Q ss_pred EccCC
Q 043732 88 LAHLG 92 (249)
Q Consensus 88 ~a~~~ 92 (249)
++...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 99643
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=1.1e-16 Score=133.55 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
..++|||+|||+++++++|+++|++||.|.+|+|+++.. ++++|||||+|++.++|++||+.++..|+|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999999874 8999999999999999999999988899999999999853
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.6e-17 Score=131.11 Aligned_cols=79 Identities=32% Similarity=0.711 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEccC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAHL 91 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~~ 91 (249)
+.++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+. .+.++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999996 4689999999998853
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.3e-16 Score=128.49 Aligned_cols=81 Identities=28% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|+
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445789999999999999999999999999999999999989999999999999999999999985 678999999999
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
+|
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 98
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=5.9e-17 Score=117.86 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
....++|||+|||+++++++|+++|++| +|++|++. ++||||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3567899999999999999999999999 99999884 67899999999999999999986 5779999999999
Q ss_pred ccC
Q 043732 89 AHL 91 (249)
Q Consensus 89 a~~ 91 (249)
+..
T Consensus 75 a~~ 77 (88)
T 1wg1_A 75 QPT 77 (88)
T ss_dssp CCC
T ss_pred cCC
Confidence 953
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.6e-16 Score=129.10 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCC--eEeE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGG--RKAN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 85 (249)
......+|||+||++.+++++|+++|++||+|++|+|..++ ++|||||+|++.++|++|++.|+ ..|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34556789999999999999999999999999999987542 57999999999999999999874 66855 9999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|++++.+
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 9999654
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.2e-16 Score=134.44 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.+ +.+|+|++|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999986 457999999999999999999986 578999999999996
Q ss_pred CC
Q 043732 91 LG 92 (249)
Q Consensus 91 ~~ 92 (249)
.+
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=122.11 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-Cee-----C
Q 043732 9 ADSANRKLFV--GGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMI-----G 80 (249)
Q Consensus 9 ~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i-----~ 80 (249)
.+...++||| +||+++++|++|+++|++||+|++|.|+. .||||||+|++.++|++|++.|+ .+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3455788999 77999999999999999999999988763 27899999999999999999874 667 6
Q ss_pred CeEeEEEEcc
Q 043732 81 GRKANCNLAH 90 (249)
Q Consensus 81 Gr~l~V~~a~ 90 (249)
|++|.|.++.
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8999999995
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.9e-16 Score=113.30 Aligned_cols=72 Identities=18% Similarity=0.413 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CC
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQF----G-------DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SP 77 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~ 77 (249)
+...++|||+|||+++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++|| .+ +.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567999999999999999999999999 8 8999998654 789999999999999999 64 67
Q ss_pred eeCCeEeEEEE
Q 043732 78 MIGGRKANCNL 88 (249)
Q Consensus 78 ~i~Gr~l~V~~ 88 (249)
.|+|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 89999999974
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=5.4e-16 Score=124.11 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCC--eEe
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGG--RKA 84 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~G--r~l 84 (249)
......++|||+|||.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|.+|++.+ +..|+| ++|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999986 577877 999
Q ss_pred EEEEc
Q 043732 85 NCNLA 89 (249)
Q Consensus 85 ~V~~a 89 (249)
+|++|
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-16 Score=124.07 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEccCC
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAHLG 92 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~~~ 92 (249)
++|||+|||.++++++|+++|++||.|++|++++++. ++++|||||+|.+.++|++|++.+ +..|.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999975 789999999999999999999775 57899999999999654
Q ss_pred C
Q 043732 93 R 93 (249)
Q Consensus 93 ~ 93 (249)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.3e-16 Score=131.52 Aligned_cols=81 Identities=28% Similarity=0.421 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
..++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4589999999999999999999999999999999999989999999999999999999999975 577999999999885
Q ss_pred CC
Q 043732 91 LG 92 (249)
Q Consensus 91 ~~ 92 (249)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=5.9e-16 Score=134.77 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=75.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLR----TYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG 80 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~ 80 (249)
...+....++|||+||++++++++|+ ++|++||.|++|++++ ++++||||||+|.+.++|++||+.+ +..|+
T Consensus 2 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 2 AVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 34567789999999999999999977 8999999999999875 5889999999999999999999886 57799
Q ss_pred CeEeEEEEccCCC
Q 043732 81 GRKANCNLAHLGR 93 (249)
Q Consensus 81 Gr~l~V~~a~~~~ 93 (249)
|+.|+|.+++.+.
T Consensus 79 g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 79 DKPMRIQYAKTDS 91 (282)
T ss_pred CcEEEEEEeccCc
Confidence 9999999996543
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=7.2e-16 Score=129.58 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEE
Q 043732 11 SANRKLFVGGLA-WETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNL 88 (249)
Q Consensus 11 ~~~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~ 88 (249)
.+.++|||+||+ +++++++|+++|++||.|++|+|+++ +||||||+|.+.++|++||+.| +..|.|++|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999865 3799999999999999999986 5789999999999
Q ss_pred ccCC
Q 043732 89 AHLG 92 (249)
Q Consensus 89 a~~~ 92 (249)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 9643
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=8.8e-16 Score=120.27 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHhCC-CCeeCC--eEeEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY-GFVTFRDPGSALRACANP-SPMIGG--RKANC 86 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-gFV~F~~~e~A~~Al~~~-~~~i~G--r~l~V 86 (249)
...-+|||+||++.+++++|+++|++||+|++|+++.+ .+|| |||+|.+.++|++|++.| +..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 45567889999999999999999999999999988764 2688 999999999999999997 477887 89999
Q ss_pred EEccCCC
Q 043732 87 NLAHLGR 93 (249)
Q Consensus 87 ~~a~~~~ 93 (249)
++++.++
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9996543
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=8.8e-16 Score=123.50 Aligned_cols=82 Identities=28% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCC--CcccEEEEEEcCHHHHHHHHhCCC-CeeC---CeEeE
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTG--RSKGYGFVTFRDPGSALRACANPS-PMIG---GRKAN 85 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg--~~kG~gFV~F~~~e~A~~Al~~~~-~~i~---Gr~l~ 85 (249)
+.++|||+|||+++++++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++|++.++ ..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999877 899999999999999999999864 4443 67888
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876443
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1e-15 Score=122.01 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE--eE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK--AN 85 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~--l~ 85 (249)
.....++|||+|||.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++|++.+ +..|+|+. |+
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 3456789999999999999999999999999999999999989999999999999999999999986 57799975 88
Q ss_pred EEEc
Q 043732 86 CNLA 89 (249)
Q Consensus 86 V~~a 89 (249)
|++|
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8775
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=113.99 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHHhhC-CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 11 SANRK-LFVGGLAWETNSDT----LRTYFEQF-GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 11 ~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
..+.+ |||+||++.+++++ |+++|++| |+|++| ++ |+|||+|.+.++|++|++.| +..|.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 99999999999988 55899999 599988 33 99999999999999999986 57799999
Q ss_pred eEEEEccCCCC
Q 043732 84 ANCNLAHLGRT 94 (249)
Q Consensus 84 l~V~~a~~~~~ 94 (249)
|+|++|+.++.
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999965543
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=9e-16 Score=118.65 Aligned_cols=77 Identities=25% Similarity=0.347 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+|| ++++++|+++|++||.|++|+|. +++|||||+|.+.++|++||+.+ +..|+|++|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999996 69999999999999999999985 46899999999999999999885 577999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
++..+.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 996543
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=113.93 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHHhhCCCEEEEEEEecCCC-CCcccEEEEEEcCHHHHHHHHhCC-CCeeCCe
Q 043732 10 DSANRKLFVGGLAW-----ETNSDTLRTYFEQFGDILEAVVITHKNT-GRSKGYGFVTFRDPGSALRACANP-SPMIGGR 82 (249)
Q Consensus 10 ~~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr 82 (249)
...+++|+|.||-. +-++++|+++|++||.|++|.|++++.+ ++++||+||+|.+.++|.+|++.| +..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999952 2368999999999999999999998764 689999999999999999999986 5789999
Q ss_pred EeEEEEcc
Q 043732 83 KANCNLAH 90 (249)
Q Consensus 83 ~l~V~~a~ 90 (249)
.|+|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999995
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.7e-15 Score=121.79 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeC---CeEeE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIG---GRKAN 85 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~---Gr~l~ 85 (249)
....++|||+|||.++++++|+++|++||.|++|++++++ +++++|||||+|.+.++|++||+.++ ..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 49999999999999999999999864 4444 49999
Q ss_pred EEEc
Q 043732 86 CNLA 89 (249)
Q Consensus 86 V~~a 89 (249)
|++|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9998
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.6e-15 Score=116.78 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=64.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHhCC-CCeeCC--eEeEEEEc
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGY-GFVTFRDPGSALRACANP-SPMIGG--RKANCNLA 89 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-gFV~F~~~e~A~~Al~~~-~~~i~G--r~l~V~~a 89 (249)
..|||+||++.+++++|+++|++||+|++|+|+. + +|| |||+|.+.++|++|++.| +..|.| +.|+|++|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4478999999999999999999999999999864 2 286 999999999999999986 567877 68999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
+.+.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.3e-15 Score=121.69 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+|||.++++++|+++|++||+|..+ ..+++++|||||+|.+.++|.+||+.+ +..|+|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988765 457899999999999999999999986 577999999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
++.+
T Consensus 170 ~a~~ 173 (175)
T 1fje_B 170 YTGE 173 (175)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 9954
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=3.7e-16 Score=126.39 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
.+....++|||+|||.++++++|+++|++||.|.. .++++..+++++|||||+|.+.++|++||+..+..|.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 46778899999999999999999999999998766 34555567899999999999999999999744678999999999
Q ss_pred EccCCC
Q 043732 88 LAHLGR 93 (249)
Q Consensus 88 ~a~~~~ 93 (249)
++..+.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 996543
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.6e-15 Score=130.38 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 9 ADSANRKLFVGGLAWET---------NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
.+...++|||+||+.++ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.| +..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 36678999999999998 7999999999999999999985 4799999999999999999986 466
Q ss_pred e------------CCeEeEEEEccCC
Q 043732 79 I------------GGRKANCNLAHLG 92 (249)
Q Consensus 79 i------------~Gr~l~V~~a~~~ 92 (249)
| +|+.|.|+||...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 7 8999999999644
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=4.1e-15 Score=126.34 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeE
Q 043732 8 EADSANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~ 85 (249)
......++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999999875 789999999999999999975 5779999999
Q ss_pred EEEccCC
Q 043732 86 CNLAHLG 92 (249)
Q Consensus 86 V~~a~~~ 92 (249)
|.++..+
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999654
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-14 Score=109.50 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C
Q 043732 9 ADSANRKLFVGGLAWETN-----------SDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S 76 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~ 76 (249)
.....++|+|.||-...+ +++|+++|++||.|++|.| .|+ .++|||||+|.+.++|++||+.+ +
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456689999999954432 6899999999999999955 554 37999999999999999999886 4
Q ss_pred CeeCCeEeEEEEccCCC
Q 043732 77 PMIGGRKANCNLAHLGR 93 (249)
Q Consensus 77 ~~i~Gr~l~V~~a~~~~ 93 (249)
..|+|++|+|.++..+.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 77999999999996543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=7.7e-15 Score=127.68 Aligned_cols=78 Identities=24% Similarity=0.272 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC-CeEeE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG-GRKAN 85 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~-Gr~l~ 85 (249)
......++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.+ +..|+ |+.|+
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 345567899999999999999999999999999999998664 589999999999999999987 46788 99999
Q ss_pred EEEcc
Q 043732 86 CNLAH 90 (249)
Q Consensus 86 V~~a~ 90 (249)
|+|++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99984
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=4e-15 Score=130.11 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEEecCC-CCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 10 DSANRKLFVGGLAWE-TNSDTLRTYFEQFGDILEAVVITHKN-TGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
....++|||+|||.+ +++++|+++|+.||.|++|+|+++.. |++++|||||+|.+.++|.+|| .+ +..|+|++|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999876 6999999999999999999999 75 57799999999
Q ss_pred EEccCC
Q 043732 87 NLAHLG 92 (249)
Q Consensus 87 ~~a~~~ 92 (249)
.++..+
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999643
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=1.1e-14 Score=126.82 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
...++|||+|||.++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.+ +..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999775 67899999999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
..+.
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7544
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=9.1e-15 Score=127.34 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCC-CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEE
Q 043732 9 ADSANRKLFVGGLAWET-NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANC 86 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V 86 (249)
.....++|||+|||+++ ++++|+++|+.||.|++|+|++++ +|+++|+|||+|.+.++|.+|++.+ +..|+|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999999987 6999999999999999999999986 57899999999
Q ss_pred EEccCCCC
Q 043732 87 NLAHLGRT 94 (249)
Q Consensus 87 ~~a~~~~~ 94 (249)
+++..+..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99966544
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.1e-14 Score=104.97 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCC-------CCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCe
Q 043732 10 DSANRKLFVGGLA-------WETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGR 82 (249)
Q Consensus 10 ~~~~~~lfVgnLp-------~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr 82 (249)
+...++|-|.-.. .++++++|+++|++||+|++|.|+ +++||||||+|++.++|++||+.+. .+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCC
Confidence 4446677776543 458999999999999999999997 4679999999999999999999853 36799
Q ss_pred EeEEEEccCCC
Q 043732 83 KANCNLAHLGR 93 (249)
Q Consensus 83 ~l~V~~a~~~~ 93 (249)
+|+|+|+..+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999996544
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3e-14 Score=114.48 Aligned_cols=76 Identities=20% Similarity=0.420 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCee
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQF----G-------DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMI 79 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i 79 (249)
++.++|||+|||.++++++|+++|++| | .|.++++. +++|||||+|.+.++|++|++..+..|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 357899999999999999999999999 6 77777664 447999999999999999994456889
Q ss_pred CCeEeEEEEccCC
Q 043732 80 GGRKANCNLAHLG 92 (249)
Q Consensus 80 ~Gr~l~V~~a~~~ 92 (249)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999988544
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=9.5e-15 Score=120.59 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEc
Q 043732 12 ANRKLFVGGLAW-ETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLA 89 (249)
Q Consensus 12 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a 89 (249)
+.++|||+|||. ++++++|+++|++||.|++|++++++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998775 789999999999999999975 57799999999999
Q ss_pred cCCC
Q 043732 90 HLGR 93 (249)
Q Consensus 90 ~~~~ 93 (249)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 6543
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2.9e-14 Score=124.60 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCN 87 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 87 (249)
..+...++|||+|||+++++++|+++|+.||.|.+|+|++++.+ ++|||||+|.+.++|++||+..+..|+|+.|.|.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998743 5899999999999999999755688999999999
Q ss_pred Ecc
Q 043732 88 LAH 90 (249)
Q Consensus 88 ~a~ 90 (249)
++.
T Consensus 114 ~~~ 116 (292)
T 2ghp_A 114 HLT 116 (292)
T ss_dssp ECC
T ss_pred ECC
Confidence 884
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=3.1e-14 Score=116.92 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCee
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQF----G-------DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMI 79 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i 79 (249)
...++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++||+..+..|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 457899999999999999999999999 5 5666655 4568999999999999999994446779
Q ss_pred CCeEeEEEEccCC
Q 043732 80 GGRKANCNLAHLG 92 (249)
Q Consensus 80 ~Gr~l~V~~a~~~ 92 (249)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=2.1e-14 Score=124.31 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CC-eeC---CeEeE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SP-MIG---GRKAN 85 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~-~i~---Gr~l~ 85 (249)
...++|||+||+.++++++|+++|+.||.|++|+|++| .+++++|||||+|.+.++|.+||+.+ +. .+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34679999999999999999999999999999999999 47999999999999999999999997 43 344 99999
Q ss_pred EEEccCCC
Q 043732 86 CNLAHLGR 93 (249)
Q Consensus 86 V~~a~~~~ 93 (249)
|+++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99996543
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=1.4e-14 Score=121.70 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCE--EEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCe----Ee
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDI--LEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGR----KA 84 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr----~l 84 (249)
..++|||+|||+++++++|+++|++||.| ++|+++.++ ++++|||||+|.+.++|.+||+.++ .+|+|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899998775 5667999999999999999999964 678776 57
Q ss_pred EEEEc
Q 043732 85 NCNLA 89 (249)
Q Consensus 85 ~V~~a 89 (249)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=6e-14 Score=105.79 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=68.9
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHHhhCCCEEEEEEEecCCC--CCcccEEEEEEcCHHHHHHHHhCC-CC
Q 043732 11 SANRKLFVGGL--AWETN--------SDTLRTYFEQFGDILEAVVITHKNT--GRSKGYGFVTFRDPGSALRACANP-SP 77 (249)
Q Consensus 11 ~~~~~lfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~d~~t--g~~kG~gFV~F~~~e~A~~Al~~~-~~ 77 (249)
..++.|.|.|+ +.++. +++|++.|++||.|++|+|++++.+ ++++||+||+|++.++|++|++.| +.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33443 3689999999999999999988764 468999999999999999999996 57
Q ss_pred eeCCeEeEEEEcc
Q 043732 78 MIGGRKANCNLAH 90 (249)
Q Consensus 78 ~i~Gr~l~V~~a~ 90 (249)
.++||.|+|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 8999999999984
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.8e-14 Score=108.47 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=61.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEe
Q 043732 18 VGGLAWETNSDTLRTYF------------EQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKA 84 (249)
Q Consensus 18 VgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l 84 (249)
+.+|++++++++|++.| ++||.|++|+|++++. ++++|||||+|.+.++|++|++.+ +..++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777777666 9999999999998875 789999999999999999999986 578999999
Q ss_pred EEEEc
Q 043732 85 NCNLA 89 (249)
Q Consensus 85 ~V~~a 89 (249)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=9.1e-14 Score=120.28 Aligned_cols=77 Identities=22% Similarity=0.414 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEE
Q 043732 9 ADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCN 87 (249)
Q Consensus 9 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~ 87 (249)
.....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456689999999999999999999999999999999643 789999999999999999975 578999999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
++..
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9953
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.2e-13 Score=117.26 Aligned_cols=76 Identities=9% Similarity=0.193 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC-CeEeEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG-GRKANCN 87 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~-Gr~l~V~ 87 (249)
...++|||+||+.++++++|+++|++|| +|++|+++.+ ++|||||+|.+.++|++||+.+ +..|+ |++|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999653 3789999999999999999986 57788 9999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
++++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9953
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=113.85 Aligned_cols=76 Identities=9% Similarity=0.193 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeC-CeEeEEE
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIG-GRKANCN 87 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~-Gr~l~V~ 87 (249)
...++|||+||+.++++++|+++|++|| .|++|+++.+ .+|+|||+|.+.++|++|++.+ +..|+ |++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4478999999999999999999999999 9999999754 2789999999999999999986 57788 9999999
Q ss_pred EccC
Q 043732 88 LAHL 91 (249)
Q Consensus 88 ~a~~ 91 (249)
++++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9953
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.5e-13 Score=105.78 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHHhhCCCEEEEEEEecCC----CCCcccEEEEEEcCHHHHHHHHhCC-CCeeCC
Q 043732 12 ANRKLFVGGLA--WET---NSDTLRTYFEQFGDILEAVVITHKN----TGRSKGYGFVTFRDPGSALRACANP-SPMIGG 81 (249)
Q Consensus 12 ~~~~lfVgnLp--~~~---te~~L~~~F~~~G~I~~v~i~~d~~----tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~G 81 (249)
.+++|+|.|+- .++ .++||++.|++||.|++|+|++++. +++++||+||+|.+.++|.+|++.| +..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 222 4689999999999999999999865 4678999999999999999999996 578999
Q ss_pred eEeEEEEcc
Q 043732 82 RKANCNLAH 90 (249)
Q Consensus 82 r~l~V~~a~ 90 (249)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=8.6e-13 Score=119.02 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-Cee---CCe
Q 043732 9 ADSANRKLFVGG--LAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMI---GGR 82 (249)
Q Consensus 9 ~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i---~Gr 82 (249)
.+...++|||+| |+.+++|++|+++|++||+|++|.+.. +||||||+|++.++|++||+.|+ .++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356778999999 589999999999999999999887743 47999999999999999999975 554 245
Q ss_pred --EeEEEEcc
Q 043732 83 --KANCNLAH 90 (249)
Q Consensus 83 --~l~V~~a~ 90 (249)
.|.|.+++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=1.6e-11 Score=93.83 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCC--C-----C---CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCee
Q 043732 11 SANRKLFVGGLAW--E-----T---NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMI 79 (249)
Q Consensus 11 ~~~~~lfVgnLp~--~-----~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i 79 (249)
..++.|.|.|+=. + + .++||++.|++||.|++|.|.++. .+||+||+|++.++|++|++.| +..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567788888732 2 1 235889999999999999986553 4899999999999999999996 5789
Q ss_pred CCeEeEEEEcc
Q 043732 80 GGRKANCNLAH 90 (249)
Q Consensus 80 ~Gr~l~V~~a~ 90 (249)
+||.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999984
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=5.8e-11 Score=91.58 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHhCC---CCeeC
Q 043732 6 GAEADSANRKLFVGGLAWE-TNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRD-PGSALRACANP---SPMIG 80 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~-~e~A~~Al~~~---~~~i~ 80 (249)
+.-.-...+.|||+||+++ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|.+|++.+ +.+|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3456678899999999999 99999999999999999999988865 59999999 89999999986 35699
Q ss_pred CeEeEEEEc
Q 043732 81 GRKANCNLA 89 (249)
Q Consensus 81 Gr~l~V~~a 89 (249)
+..+.+++.
T Consensus 85 g~~~~~evL 93 (121)
T 1owx_A 85 NKEVTWEVL 93 (121)
T ss_dssp SSSEEEEEC
T ss_pred CcEEEEEEC
Confidence 998888876
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-10 Score=83.23 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCe
Q 043732 11 SANRKLFVGGLA----WETNS----DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGR 82 (249)
Q Consensus 11 ~~~~~lfVgnLp----~~~te----~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr 82 (249)
+...+|+|.-++ .++-+ .+|.+.|++||+|+.++++.|+ +||+|.+.++|.+||+..+..|+||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 445678887665 23333 5789999999999999999875 8999999999999999446789999
Q ss_pred EeEEEEccC
Q 043732 83 KANCNLAHL 91 (249)
Q Consensus 83 ~l~V~~a~~ 91 (249)
.|+|+++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999953
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.5e-09 Score=79.62 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCCCC-----C-CH---HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeC
Q 043732 10 DSANRKLFVGGLAWE-----T-NS---DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIG 80 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~-----~-te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~ 80 (249)
.+...||+|.-++.+ + ++ .+|.+.|++||+|+.++++.|+ +||+|.+.++|.+||+..+..|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 456678999888643 2 32 4689999999999999999885 99999999999999994468899
Q ss_pred CeEeEEEEcc
Q 043732 81 GRKANCNLAH 90 (249)
Q Consensus 81 Gr~l~V~~a~ 90 (249)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999874
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=2.4e-09 Score=90.06 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHhhCCCEEEEEEEecC----CCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeEeEEEEcc
Q 043732 24 ETNSDTLRTYFEQFGDILEAVVITHK----NTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRKANCNLAH 90 (249)
Q Consensus 24 ~~te~~L~~~F~~~G~I~~v~i~~d~----~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~l~V~~a~ 90 (249)
+-.+++|++.|++||+|++++|+++. .+++++|++||+|.+.++|.+|++.| +..++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34568999999999999999998654 45589999999999999999999997 577999999999984
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=9.7e-06 Score=60.09 Aligned_cols=74 Identities=27% Similarity=0.310 Sum_probs=63.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-----CCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEe
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQ-----FGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKA 84 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~-----~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l 84 (249)
....++|.|.|||.+++++.|+-+|++ -|+|.+++... +-|+|+|.+.+.|++.|+...+.|++.+|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 456789999999999999999999986 26888887753 35899999999999999998999999999
Q ss_pred EEEEccC
Q 043732 85 NCNLAHL 91 (249)
Q Consensus 85 ~V~~a~~ 91 (249)
.|.-...
T Consensus 77 sV~P~~~ 83 (104)
T 2dhx_A 77 SLRPAPP 83 (104)
T ss_dssp EEEECCC
T ss_pred EEEcCCC
Confidence 9976643
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.8e-06 Score=63.67 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhC-----CCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-CCeeCCeE
Q 043732 10 DSANRKLFVGGLAWETNSDTLRTYFEQF-----GDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-SPMIGGRK 83 (249)
Q Consensus 10 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~~~i~Gr~ 83 (249)
+.+.++|=+=|||+.++++.|+.+.+.+ |+|++|.+..|.. =|+|+|.|...|-||.-.+ +.+|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4457788888999999999999999999 9999999988753 5999999999998888664 67899999
Q ss_pred eEEEEc
Q 043732 84 ANCNLA 89 (249)
Q Consensus 84 l~V~~a 89 (249)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999744
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.56 E-value=0.00016 Score=53.00 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=48.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 6 GAEADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 6 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
+.+.......||+=++|.++...||.++|+.||.| .|+++-|. .|||.|.+++.|..|+..+
T Consensus 8 g~d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33444444444444999999999999999999954 68888775 5999999999999998854
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00047 Score=51.12 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCC-C----HHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEe
Q 043732 11 SANRKLFVGGLAWET-N----SDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKA 84 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~-t----e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l 84 (249)
.-.++|+|.||+.++ . .+.++++|..|+++.....++.-+ -..|.|.+.++|.+|-..+. ..+.|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998766 2 257799999999998877775421 36899999999999999975 66999999
Q ss_pred EEEEccC
Q 043732 85 NCNLAHL 91 (249)
Q Consensus 85 ~V~~a~~ 91 (249)
+|-+++.
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999973
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00065 Score=51.67 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCC-eEeEE
Q 043732 8 EADSANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGG-RKANC 86 (249)
Q Consensus 8 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~G-r~l~V 86 (249)
++..+.+.|.|-+.+.+. .+.|.+.|++||+|++.... ....+-.|.|+++.+|++||.+++..|++ -.|-|
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 345567888999999885 56778899999999988762 12458899999999999999999988874 67777
Q ss_pred EEcc
Q 043732 87 NLAH 90 (249)
Q Consensus 87 ~~a~ 90 (249)
....
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 7753
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.00033 Score=51.45 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=44.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
.++| ++|.++...||.++|+.|| -..|+++-|. .|||.|.+++.|..|+..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 4555 9999999999999999999 4578888775 599999999999999885
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.69 E-value=0.0063 Score=44.04 Aligned_cols=65 Identities=6% Similarity=0.053 Sum_probs=51.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCC--cccEEEEEEcCHHHHHHHHhCC-CCe
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGR--SKGYGFVTFRDPGSALRACANP-SPM 78 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~kG~gFV~F~~~e~A~~Al~~~-~~~ 78 (249)
++|-|++||..++|+++.+.++...++.....+..+.+.+ .-.-|+|.|++.|++....+.. ++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 5899999999999999999999888876666655543332 2356999999999998888874 454
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.55 E-value=0.0041 Score=47.97 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEEec--------CCCC-----CcccEEEEEEcCHHHHHHHHhCCCC
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILE-AVVITH--------KNTG-----RSKGYGFVTFRDPGSALRACANPSP 77 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~d--------~~tg-----~~kG~gFV~F~~~e~A~~Al~~~~~ 77 (249)
....|.|=+.|.+.. ..+.+.|++||.|++ +.+.++ +.+. .....-.|+|+++.+|.+||.+++.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345566668865554 557788999999976 221110 0001 1356778999999999999999999
Q ss_pred eeCCeEeEEEEcc
Q 043732 78 MIGGRKANCNLAH 90 (249)
Q Consensus 78 ~i~Gr~l~V~~a~ 90 (249)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888774
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.26 E-value=0.0021 Score=59.78 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
.++|+|. .+.++++.+|.++|++||.|.++.+-+++ .-|+.|+|.+.+++.+++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4789997 79999999999999999999998776553 269999999999999888664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.50 E-value=0.012 Score=45.74 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=27.3
Q ss_pred EEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 42 EAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 42 ~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
.++|+++. .+++|||||+|.+.++|++|++.+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhh
Confidence 46777775 368999999999999999999775
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.83 E-value=0.054 Score=39.49 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCC--cccEEEEEEcCHHHHHHHHhCC-CCe-eCCe----E
Q 043732 12 ANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGR--SKGYGFVTFRDPGSALRACANP-SPM-IGGR----K 83 (249)
Q Consensus 12 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~--~kG~gFV~F~~~e~A~~Al~~~-~~~-i~Gr----~ 83 (249)
-+-+|.|+.||..+||+++.+.++..-++.....+..+.+-+ .-.-|+|.|++.|+.....+.. ++. +|.+ +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 456899999999999999888887665542222222221111 1245899999999999888875 444 3322 3
Q ss_pred eEEEEc
Q 043732 84 ANCNLA 89 (249)
Q Consensus 84 l~V~~a 89 (249)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.24 E-value=0.032 Score=43.13 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=34.5
Q ss_pred CCCcccEEEEEEcCHHHHHHHHhCC-C-CeeCCeEeEEEEccC
Q 043732 51 TGRSKGYGFVTFRDPGSALRACANP-S-PMIGGRKANCNLAHL 91 (249)
Q Consensus 51 tg~~kG~gFV~F~~~e~A~~Al~~~-~-~~i~Gr~l~V~~a~~ 91 (249)
..+.+|+++|+|.+.++|++|++.+ + ..|+| .|.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999987 5 66999 999998853
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.42 E-value=0.59 Score=43.79 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP 75 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~ 75 (249)
...++|+ ++..+...+|.++|+.||. .+|+++.|. .+||.|.+.+.|..++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 4456665 8999999999999999995 467766553 5999999999999888764
No 222
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=49.96 E-value=43 Score=21.31 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCC
Q 043732 13 NRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSP 77 (249)
Q Consensus 13 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~ 77 (249)
..++.|.++.-.-=...|++.+++ ..|.++.+-.. .+-+-|+|.+.++..++|+..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 456888898877778889999988 88888777432 34567888767777888887654
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=49.44 E-value=42 Score=22.07 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=37.9
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhCCC-----EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCC-CeeCCeEeEEE
Q 043732 15 KLFVG-GLAWETNSDTLRTYFEQFGD-----ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPS-PMIGGRKANCN 87 (249)
Q Consensus 15 ~lfVg-nLp~~~te~~L~~~F~~~G~-----I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 87 (249)
++||. +-...+...+|..++..-+. |-.|++.- .|.||+.... .++++++.+. ..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45664 22345666777777764443 44555532 2789988764 5677777764 56899999998
Q ss_pred Ec
Q 043732 88 LA 89 (249)
Q Consensus 88 ~a 89 (249)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 224
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.42 E-value=49 Score=23.87 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHH-hhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCeEeEEEEcc
Q 043732 20 GLAWETNSDTLRTYF-EQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGRKANCNLAH 90 (249)
Q Consensus 20 nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~a~ 90 (249)
.++..+.-+||..-. +.||.-.++... +.+ ..|-..+.||.++||+.+.....-+.|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cce-------EEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 356778877775554 688987777765 322 678999999999999997544444455555543
No 225
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.05 E-value=49 Score=23.14 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.7
Q ss_pred CEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 39 DILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 39 ~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
+|++|+|.+-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668999999999985
No 226
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.20 E-value=1e+02 Score=21.31 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=31.7
Q ss_pred CHHHHHHHHh----hCC-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCC
Q 043732 26 NSDTLRTYFE----QFG-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSP 77 (249)
Q Consensus 26 te~~L~~~F~----~~G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~ 77 (249)
.|+.+++.++ ..+ +|.++.+.. .-.||-||+++..++...+|+...+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 4555544443 223 355665542 3689999999999999999988653
No 227
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.85 E-value=1.3e+02 Score=21.28 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=51.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCC-C-------CeeCCe
Q 043732 11 SANRKLFVGGLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANP-S-------PMIGGR 82 (249)
Q Consensus 11 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~-~-------~~i~Gr 82 (249)
...|-|-|-|+|..+-..++.-.....|---.|..+ .|-+.+.|.+.++..-||..+ + .+|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 456778888999999988887777777765556554 245999999999998888762 2 246777
Q ss_pred EeEEE
Q 043732 83 KANCN 87 (249)
Q Consensus 83 ~l~V~ 87 (249)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76664
No 228
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.72 E-value=1.2e+02 Score=21.10 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=35.6
Q ss_pred EEcCCCCCCCHHHHHHHHhhC-C-CEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHh
Q 043732 17 FVGGLAWETNSDTLRTYFEQF-G-DILEAVVITHKNTGRSKGYGFVTFRDPGSALRACA 73 (249)
Q Consensus 17 fVgnLp~~~te~~L~~~F~~~-G-~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~ 73 (249)
|+-.++...+..+|++.+++. + +|.+|..+.-+. +. --|+|++...++|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHH
Confidence 344467788999999888754 4 456666554432 22 248999988777766543
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.77 E-value=1.5e+02 Score=23.31 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=36.9
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hhCCCEEEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHh
Q 043732 15 KLFVGGLAW-E--------TNSDTLRTYF--EQFGDILEAVVITHKNTGRSKGYGFVTFRD-PGSALRACA 73 (249)
Q Consensus 15 ~lfVgnLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~-~e~A~~Al~ 73 (249)
.+.|-|++. . ....+|++.| +.|..+ +|+.+.++ .-+.|++.|+|.+ -.--..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 456667776 2 3347899977 899875 46666665 3478999999975 334444443
No 230
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=31.31 E-value=63 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=21.6
Q ss_pred CEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 39 DILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 39 ~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887666568999999999985
No 231
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=30.92 E-value=63 Score=28.60 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=40.5
Q ss_pred EEEcCCCCCC----CHHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCeeCCe
Q 043732 16 LFVGGLAWET----NSDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPMIGGR 82 (249)
Q Consensus 16 lfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr 82 (249)
-+||||..-. ....+.++.++||.|..+.+. +.-+|...+.+.++.++......+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 4688876432 246678888899999888763 134788899999999997754434333
No 232
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.31 E-value=68 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.4
Q ss_pred CEEEEEEEecCCCCCcccEEEEEEcC
Q 043732 39 DILEAVVITHKNTGRSKGYGFVTFRD 64 (249)
Q Consensus 39 ~I~~v~i~~d~~tg~~kG~gFV~F~~ 64 (249)
+|++|+|.+-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887666668999999999985
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.96 E-value=8.6 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEc
Q 043732 28 DTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFR 63 (249)
Q Consensus 28 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~ 63 (249)
+|+.++|...|.| ++..+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~V---kwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGIC---KWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEE---EEEET-----TTTEEEEEEE
T ss_pred CcccccccceeEE---EEEEC-----CCCeeEEeeC
Confidence 4556666666654 34433 3799999976
No 234
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.65 E-value=96 Score=22.24 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHh-hCC---CEEEE-EEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 043732 23 WETNSDTLRTYFE-QFG---DILEA-VVITHKNTGRSKGYGFVTFRDPGSALRAC 72 (249)
Q Consensus 23 ~~~te~~L~~~F~-~~G---~I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~Al 72 (249)
...+..+|++.+. .|+ +++.| .+...-..+++.|||.| |+|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 4567788877774 333 23333 23333344667788754 77777776654
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.17 E-value=12 Score=27.19 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHhhCCCEEEEEEEecCCCCCcc-cEEEEEEcCHHHHHHHHhCCCCee
Q 043732 20 GLAWETNSDTLRTYFEQFGDILEAVVITHKNTGRSK-GYGFVTFRDPGSALRACANPSPMI 79 (249)
Q Consensus 20 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-G~gFV~F~~~e~A~~Al~~~~~~i 79 (249)
-|-...++++|+++..+.+ +..+.+.+....|+.. -.-+-.|.+.++|.+|++.|...|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3444556778888887776 4445555433223321 011236899999999999986544
No 236
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=27.92 E-value=93 Score=24.19 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCHHHHHHHHhhCCCEE---EEEEEecCCCCCcccEEEE
Q 043732 25 TNSDTLRTYFEQFGDIL---EAVVITHKNTGRSKGYGFV 60 (249)
Q Consensus 25 ~te~~L~~~F~~~G~I~---~v~i~~d~~tg~~kG~gFV 60 (249)
.++++|+++-.+.|++. ++.+..|..+|+.+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999874 5566666547999988875
No 237
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.74 E-value=1.1e+02 Score=21.95 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHh-hCC---CEEEE-EEEecCCCCCcccEEEEEEcCHHHHHH
Q 043732 23 WETNSDTLRTYFE-QFG---DILEA-VVITHKNTGRSKGYGFVTFRDPGSALR 70 (249)
Q Consensus 23 ~~~te~~L~~~F~-~~G---~I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~ 70 (249)
...+..+|++-+. .|+ +++.| .+...-..+++.|||.| |+|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567788877774 333 23333 23333344667788755 777776654
No 238
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=27.36 E-value=1.7e+02 Score=20.93 Aligned_cols=56 Identities=4% Similarity=-0.058 Sum_probs=34.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-------CCCEEEEEEEecCCCCCcccE--E-EEEEcCHHHHHHHH
Q 043732 16 LFVGGLAWETNSDTLRTYFEQ-------FGDILEAVVITHKNTGRSKGY--G-FVTFRDPGSALRAC 72 (249)
Q Consensus 16 lfVgnLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~tg~~kG~--g-FV~F~~~e~A~~Al 72 (249)
|.+-.|..++++++++++.+. ...|+++.+-++.. +..+|| + .++|+|.++.+.-.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 444467888888766555533 34577777766653 444554 3 36888887765443
No 239
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.49 E-value=1e+02 Score=22.39 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHh-hCCC---EEEE-EEEecCCCCCcccEEEEEEcCHHHHHHH
Q 043732 23 WETNSDTLRTYFE-QFGD---ILEA-VVITHKNTGRSKGYGFVTFRDPGSALRA 71 (249)
Q Consensus 23 ~~~te~~L~~~F~-~~G~---I~~v-~i~~d~~tg~~kG~gFV~F~~~e~A~~A 71 (249)
...+..+|++-+. .|+. ++-| .+...-..+++.|||.| |+|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3567778877664 3432 2233 22233344667888855 7777777654
No 240
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.69 E-value=61 Score=30.90 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHh----hCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 21 LAWETNSDTLRTYFE----QFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 21 Lp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
...+.+--||.++|- .+|.|+++.+...+. -+.+...++.|.|.++|.+++..
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHH
Confidence 344455557888882 778899987765443 34566889999999999888865
No 241
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=25.14 E-value=1.9e+02 Score=20.80 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=36.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHh-------hCCCEEEEEEEecCCC-CCcccE--E-EEEEcCHHHHHHHHh
Q 043732 15 KLFVGGLAWETNSDTLRTYFE-------QFGDILEAVVITHKNT-GRSKGY--G-FVTFRDPGSALRACA 73 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~kG~--g-FV~F~~~e~A~~Al~ 73 (249)
-|-+-.|..+++++++.++.+ +...|+++.+-++... +..++| + .++|+|.++.+.-..
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 344447888888776555443 4567888888766532 344554 3 368999887655443
No 242
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.02 E-value=1.7e+02 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.5
Q ss_pred EEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhCCCCe
Q 043732 40 ILEAVVITHKNTGRSKGYGFVTFRDPGSALRACANPSPM 78 (249)
Q Consensus 40 I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~~~~~ 78 (249)
|.++... ...|||-||+=.+..+.++||+.+.+.
T Consensus 41 I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAP-----EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEEC-----TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEec-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5555443 235899999999999999999987544
No 243
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=23.73 E-value=1.8e+02 Score=20.01 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=33.1
Q ss_pred cCCCCCCCHHHHHHHH-------hhCCCEEEEEEEecCCCCCcccE--E-EEEEcCHHHHHHH
Q 043732 19 GGLAWETNSDTLRTYF-------EQFGDILEAVVITHKNTGRSKGY--G-FVTFRDPGSALRA 71 (249)
Q Consensus 19 gnLp~~~te~~L~~~F-------~~~G~I~~v~i~~d~~tg~~kG~--g-FV~F~~~e~A~~A 71 (249)
-.|..++++++++++. .+...|+++.+-++.. +..+|| + .++|+|.++.+.-
T Consensus 11 fk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 11 MEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHH
Confidence 3577787776554444 2466788888877654 444555 3 3688888876543
No 244
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.23 E-value=1.6e+02 Score=23.78 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=24.9
Q ss_pred cccEEEEEEcCHHHHHHHHhCCCCeeCCeE
Q 043732 54 SKGYGFVTFRDPGSALRACANPSPMIGGRK 83 (249)
Q Consensus 54 ~kG~gFV~F~~~e~A~~Al~~~~~~i~Gr~ 83 (249)
-|||-|||=.+..+.++||+.+.+....+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~~~~ 177 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYISQK 177 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEEEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhcCCc
Confidence 589999999999999999999876544333
No 245
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.97 E-value=65 Score=29.64 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHHHH--hhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 043732 29 TLRTYF--EQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRAC 72 (249)
Q Consensus 29 ~L~~~F--~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al 72 (249)
+|+.+| +.+|.|+++.+...+. .+....+++.|.+.+++.+++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 466777 3689999988765543 334556789999988876543
No 246
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.83 E-value=42 Score=28.35 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEEe
Q 043732 14 RKLFVGGLAWETNSDTLRTYFEQFGDILEAVVIT 47 (249)
Q Consensus 14 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~ 47 (249)
..+.|+|||..++..-|.++++....+.++.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655566555543
No 247
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=21.40 E-value=1.4e+02 Score=23.58 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCEEEEEEEecCCCCCcccEEEEEEcCHHHHHHHHhC
Q 043732 27 SDTLRTYFEQFGDILEAVVITHKNTGRSKGYGFVTFRDPGSALRACAN 74 (249)
Q Consensus 27 e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~gFV~F~~~e~A~~Al~~ 74 (249)
-++|+.+|+.|-..+ .| |-+.+-.|.+.+.|.+.|++
T Consensus 132 l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHH
Confidence 367899999994331 12 33667789999999988864
No 248
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.27 E-value=54 Score=17.32 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=11.0
Q ss_pred CCHHHHHHHHhhC
Q 043732 25 TNSDTLRTYFEQF 37 (249)
Q Consensus 25 ~te~~L~~~F~~~ 37 (249)
-.|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3689999999887
No 249
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.84 E-value=48 Score=22.03 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=9.0
Q ss_pred ccEEEEEEcCH
Q 043732 55 KGYGFVTFRDP 65 (249)
Q Consensus 55 kG~gFV~F~~~ 65 (249)
+..|||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999874
No 250
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.44 E-value=70 Score=28.13 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=19.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh
Q 043732 15 KLFVGGLAWETNSDTLRTYFEQ 36 (249)
Q Consensus 15 ~lfVgnLp~~~te~~L~~~F~~ 36 (249)
...|+|||..++..-|.++++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999888874
Done!