BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043734
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
           Pseudomonas Putida 86
 pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
           Pseudomonas Putida 86
          Length = 168

 Score = 29.6 bits (65), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 82  STVIGRAQGIYAMSSQQDEFSLLMTLTYGFTSGPYNGSSFSVLGRNPVMS--EVREM 136
            TV G +QG   +++ QD F     L  GF +     ++ S+L  NP  S  EVRE+
Sbjct: 81  ETVEGLSQG-EKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREV 136


>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr10.1b From Yellow Lupine
 pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
           Llpr10.1b From Yellow Lupine
          Length = 155

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 99  DEFSLLMTLTYGFTSGPYNGS----SFSVLGRNPVMSE-VREMPIVGGTGIFRLARGYCL 153
           DE    +T      SGP  GS          +  V+S+ VRE     GTG+F+   GY L
Sbjct: 91  DESLEKITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVL 150

Query: 154 A 154
           A
Sbjct: 151 A 151


>pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
           Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
          Length = 237

 Score = 28.1 bits (61), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 59  PIKAMF-GSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSSQQDEFSLLMTLTYGFTS 113
           P++A+F G    +D+  T+  DP S     A+ +   +    E  LLM+ T G  S
Sbjct: 149 PMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYS 204


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,981,455
Number of Sequences: 62578
Number of extensions: 187974
Number of successful extensions: 351
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 4
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)