Query 043734
Match_columns 175
No_of_seqs 121 out of 529
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1.3E-53 2.9E-58 334.9 18.9 142 27-174 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.9 0.00027 5.8E-09 56.7 12.1 91 62-159 34-127 (176)
3 PLN02343 allene oxide cyclase 97.3 0.0051 1.1E-07 51.2 11.9 91 62-159 85-178 (229)
4 PF11528 DUF3224: Protein of u 86.3 11 0.00025 29.3 9.6 88 82-174 40-133 (134)
5 PF07172 GRP: Glycine rich pro 71.2 2.8 6.2E-05 30.8 1.8 15 1-16 1-15 (95)
6 PF10731 Anophelin: Thrombin i 40.5 19 0.00041 24.7 1.5 21 4-24 2-22 (65)
7 KOG1692 Putative cargo transpo 32.9 2.8E+02 0.006 23.3 7.5 66 105-175 43-115 (201)
8 PF08239 SH3_3: Bacterial SH3 22.5 68 0.0015 19.9 1.8 16 73-88 4-19 (55)
9 PLN00115 pollen allergen group 19.9 2.6E+02 0.0056 21.3 4.8 17 1-17 1-17 (118)
10 PF06347 SH3_4: Bacterial SH3 19.8 72 0.0016 20.1 1.5 17 73-89 6-22 (55)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1.3e-53 Score=334.93 Aligned_cols=142 Identities=50% Similarity=0.830 Sum_probs=134.5
Q ss_pred c-ceEEEEEeeccCCCCCceeeeecCCCCCCCCCccCCcceEEEEecccccCCCCCCCceeeeeEEEEeecCCCcceEEE
Q 043734 27 V-TRMQFYMHDIVSGPTATAVPVAGRSNFTSPDPIKAMFGSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSSQQDEFSLLM 105 (175)
Q Consensus 27 k-~~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~~~~FG~~~v~Dd~ltegp~~~S~~VGraqG~~~~~~s~~~~~~~~ 105 (175)
| +||+|||||+++|||+|+++|++++++. . .+||+++|+||||||||+++||+||||||+|+ .+++++.+|++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~-~----~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~-~~s~~~~~~~~ 74 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPS-S----SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYV-SASLDGSSWFM 74 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCC-C----CCCcEEEEEeeceEcCCCCCCccceEEEEEEE-eecccCccEEE
Confidence 5 8999999999999999999999887432 1 37999999999999999999999999999999 99999999999
Q ss_pred EEEEEEecCCcCCceEEEEcCCCCCCCceeeEEeecccceeceEeEEEEEEE-EecCCCeEEEEEEEEEe
Q 043734 106 TLTYGFTSGPYNGSSFSVLGRNPVMSEVREMPIVGGTGIFRLARGYCLAKTS-SMDQMDAVIGYNVTLLH 174 (175)
Q Consensus 106 ~~t~vF~~g~~~GSTL~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~-~~~~~~~v~e~~v~v~h 174 (175)
+++++|++++||||||+++|+++..+++||||||||||+|||||||++++++ +..+.++|+||||||+|
T Consensus 75 ~~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 75 SFTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTVFDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEEEEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEEeecCCCCEEEEEEEEEEC
Confidence 9999999999999999999999998999999999999999999999999999 66699999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.94 E-value=0.00027 Score=56.68 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=66.4
Q ss_pred CCcceEEEEecccccCCCCCCCceeeeeEEEEeec---CCCcceEEEEEEEEEecCCcCCceEEEEcCCCCCCCceeeEE
Q 043734 62 AMFGSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSS---QQDEFSLLMTLTYGFTSGPYNGSSFSVLGRNPVMSEVREMPI 138 (175)
Q Consensus 62 ~~FG~~~v~Dd~ltegp~~~S~~VGraqG~~~~~~---s~~~~~~~~~~t~vF~~g~~~GSTL~v~G~~~~~~~~~E~aV 138 (175)
...|+.+-|.|+|++|.- -+.+|--+|+-++.. .+.+-.+--..++.|-+ .| .|+++|....-+ ..-++|
T Consensus 34 nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryEaiySfyfGd---yG-hISvqGpy~t~e-DtyLAV 106 (176)
T PF06351_consen 34 NSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYEAIYSFYFGD---YG-HISVQGPYLTYE-DTYLAV 106 (176)
T ss_dssp S-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEEEEEEEE-GG---GE-EEEEEEEEETTS--EEEEE
T ss_pred hhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEEEEEEEEecc---cc-eEEEeccccccc-ceeEEE
Confidence 458999999999999864 688999999988422 22333444556677755 46 999999986654 468999
Q ss_pred eecccceeceEeEEEEEEEEe
Q 043734 139 VGGTGIFRLARGYCLAKTSSM 159 (175)
Q Consensus 139 VGGTG~Fr~ArGya~~~t~~~ 159 (175)
.||||-|+.|+|-++++.+-+
T Consensus 107 TGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 107 TGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEETTTT-EEEEEEEEEET
T ss_pred eccCceeecceEEEEEEEeec
Confidence 999999999999998887755
No 3
>PLN02343 allene oxide cyclase
Probab=97.34 E-value=0.0051 Score=51.23 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=71.9
Q ss_pred CCcceEEEEecccccCCCCCCCceeeeeEEEEeecC---CCcceEEEEEEEEEecCCcCCceEEEEcCCCCCCCceeeEE
Q 043734 62 AMFGSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSSQ---QDEFSLLMTLTYGFTSGPYNGSSFSVLGRNPVMSEVREMPI 138 (175)
Q Consensus 62 ~~FG~~~v~Dd~ltegp~~~S~~VGraqG~~~~~~s---~~~~~~~~~~t~vF~~g~~~GSTL~v~G~~~~~~~~~E~aV 138 (175)
...|+++-|.++|++|. --|.+|--.|+-++.-. +.+-.+=..+++.|-| .| .|++||....-+ ..-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD---yG-HisvqGpyltye-Dt~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD---YG-HISVQGPYLTYE-DTYLAI 157 (229)
T ss_pred ccccceeccccccccch--hhhhhcccceeEEEEEeccccCCceeEEEEEEEecC---cc-eeEEeccccccc-cceEEe
Confidence 45899999999999975 45789999998874221 2344566677888866 46 899999987654 368999
Q ss_pred eecccceeceEeEEEEEEEEe
Q 043734 139 VGGTGIFRLARGYCLAKTSSM 159 (175)
Q Consensus 139 VGGTG~Fr~ArGya~~~t~~~ 159 (175)
.||+|-|+.|+|-+.+..+-+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999998887665
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=86.30 E-value=11 Score=29.26 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCceeeeeEEEEeecCC-CcceEEEEEEEEE-ecCCcCCceEEEE--cCCCCCCCceeeEEe--ecccceeceEeEEEEE
Q 043734 82 STVIGRAQGIYAMSSQQ-DEFSLLMTLTYGF-TSGPYNGSSFSVL--GRNPVMSEVREMPIV--GGTGIFRLARGYCLAK 155 (175)
Q Consensus 82 S~~VGraqG~~~~~~s~-~~~~~~~~~t~vF-~~g~~~GSTL~v~--G~~~~~~~~~E~aVV--GGTG~Fr~ArGya~~~ 155 (175)
-.+.|++++-|+ .+-. ++...++.+..+= +-...+| |+.++ |.........+|-|| -|||++...+|-..++
T Consensus 40 G~l~Gts~~~~L-~~y~~~g~a~yva~E~~~Gtl~Gr~G-sFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~ 117 (134)
T PF11528_consen 40 GDLEGTSTGEYL-MAYDPDGSAGYVAFERFTGTLDGRSG-SFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTIT 117 (134)
T ss_dssp TTEEEEEEEEEE-EEEECTTEEEEEEEEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEE
T ss_pred eEEEEEEEEEEE-EEEcCCCcEEEEEEEEEEEEECCceE-EEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEE
Confidence 457788888888 4432 4445555443221 2234566 44444 444333345689999 9999999999998665
Q ss_pred EEEecCCCeEEEEEEEEEe
Q 043734 156 TSSMDQMDAVIGYNVTLLH 174 (175)
Q Consensus 156 t~~~~~~~~v~e~~v~v~h 174 (175)
... +...++|+..+-+
T Consensus 118 ~~~---g~h~y~f~y~l~d 133 (134)
T PF11528_consen 118 IDE---GQHAYDFEYTLPD 133 (134)
T ss_dssp EET---TCEEEEEEEEEEE
T ss_pred ECC---CCceeeEEEECCC
Confidence 443 4447788877643
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.21 E-value=2.8 Score=30.82 Aligned_cols=15 Identities=47% Similarity=0.487 Sum_probs=8.8
Q ss_pred CcchhhHHHHHHHHHH
Q 043734 1 MALSGKFLFLVGVLTL 16 (175)
Q Consensus 1 ~~~~~~~~~~~~l~~~ 16 (175)
|| |++++++.+||++
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 78 6666655555433
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=40.49 E-value=19 Score=24.73 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHhhcccccc
Q 043734 4 SGKFLFLVGVLTLFCTTEAMK 24 (175)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~ 24 (175)
.+|++++.+||...++...++
T Consensus 2 A~Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 2 ASKLIVIALLCVALVAIVQSA 22 (65)
T ss_pred cchhhHHHHHHHHHHHHHhcC
Confidence 468888888887766643343
No 7
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.91 E-value=2.8e+02 Score=23.26 Aligned_cols=66 Identities=12% Similarity=0.243 Sum_probs=46.1
Q ss_pred EEEEEEEecCCcCCceEEEEcCCCCC--CCceeeEEeecccceeceEeEEEEEEEEec---C--CCeEEEEEEEEEeC
Q 043734 105 MTLTYGFTSGPYNGSSFSVLGRNPVM--SEVREMPIVGGTGIFRLARGYCLAKTSSMD---Q--MDAVIGYNVTLLHY 175 (175)
Q Consensus 105 ~~~t~vF~~g~~~GSTL~v~G~~~~~--~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~---~--~~~v~e~~v~v~hy 175 (175)
++.++++.+|.+.|=.+.|.|...-. +.++|.+ |+|.++-=.--..+.+++ + ...++-|+|++-||
T Consensus 43 ~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ss-----gk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~ 115 (201)
T KOG1692|consen 43 LSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESS-----GKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHA 115 (201)
T ss_pred EEEEEEEecCCccceeEEEECCCCchhhhcccccC-----ceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeec
Confidence 45566677788888899999987542 3345543 888887655545566665 2 44689999999875
No 8
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=22.48 E-value=68 Score=19.86 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=12.7
Q ss_pred ccccCCCCCCCceeee
Q 043734 73 PLTMTPDPNSTVIGRA 88 (175)
Q Consensus 73 ~ltegp~~~S~~VGra 88 (175)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 3678888889888875
No 9
>PLN00115 pollen allergen group 3; Provisional
Probab=19.93 E-value=2.6e+02 Score=21.35 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=10.2
Q ss_pred CcchhhHHHHHHHHHHh
Q 043734 1 MALSGKFLFLVGVLTLF 17 (175)
Q Consensus 1 ~~~~~~~~~~~~l~~~~ 17 (175)
|++++.++..+.|.+|.
T Consensus 1 ~~~~~~~~~~~~~a~l~ 17 (118)
T PLN00115 1 MSSLSFLLLAVALAALF 17 (118)
T ss_pred CchhHHHHHHHHHHHHh
Confidence 77777766555555444
No 10
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=19.78 E-value=72 Score=20.09 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.0
Q ss_pred ccccCCCCCCCceeeee
Q 043734 73 PLTMTPDPNSTVIGRAQ 89 (175)
Q Consensus 73 ~ltegp~~~S~~VGraq 89 (175)
.|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 57889999999887764
Done!