Query 043734
Match_columns 175
No_of_seqs 121 out of 529
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 2.1E-07 7.3E-12 74.3 14.1 101 62-173 43-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 1.5E-06 5.1E-11 69.7 12.4 91 62-159 51-144 (195)
3 2q03_A Uncharacterized protein 42.5 1E+02 0.0035 22.9 9.9 87 82-171 45-136 (138)
4 2ooj_A Hypothetical protein; s 31.5 1.6E+02 0.0055 21.9 12.3 87 82-172 41-133 (141)
5 3h6j_A Neuraminidase, sialidas 28.2 31 0.0011 29.1 2.4 56 99-156 371-436 (438)
6 2krs_A Probable enterotoxin; a 14.7 81 0.0028 20.3 1.8 16 73-88 12-27 (74)
7 2kq8_A Cell WALL hydrolase; GF 14.5 50 0.0017 21.1 0.7 16 73-88 13-28 (70)
8 2kt8_A Probable surface protei 12.6 1.2E+02 0.0043 19.6 2.3 16 73-88 14-29 (76)
9 4ank_A Transthyretin; hormone 11.3 96 0.0033 23.4 1.5 48 1-48 1-50 (147)
10 2e56_A Lymphocyte antigen 96; 9.8 5.8E+02 0.02 19.2 6.1 53 121-175 86-140 (144)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.77 E-value=2.1e-07 Score=74.26 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=79.0
Q ss_pred CCcceEEEEecccccCCCCCCCceeeeeEEEEeecC----CCcceEEEEEEEEEecCCcCCceEEEEcCCCCCCCceeeE
Q 043734 62 AMFGSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSSQ----QDEFSLLMTLTYGFTSGPYNGSSFSVLGRNPVMSEVREMP 137 (175)
Q Consensus 62 ~~FG~~~v~Dd~ltegp~~~S~~VGraqG~~~~~~s----~~~~~~~~~~t~vF~~g~~~GSTL~v~G~~~~~~~~~E~a 137 (175)
...|+.+.|+++|.++.. -+.||.-+|+-+ ... +.+..+-..+++.|-+ .| .|++||....- +...+|
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv-~~~~~p~~~gdryE~tyS~yfgd---~G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCV-VIEHVPEKKGERFEATYSFYFGD---YG-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEE-EEEEEGGGTEEEEEEEEEEECGG---GE-EEEEEEEEETT-BCEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEE-EEEecCCCCCcEEEEEEEEEeCC---Cc-eEEEecccccc-ccceee
Confidence 458999999999997653 589999999988 443 3344566677788865 35 99999996433 347899
Q ss_pred EeecccceeceEeEEEEEEEEecCCCeEEEEEEEEE
Q 043734 138 IVGGTGIFRLARGYCLAKTSSMDQMDAVIGYNVTLL 173 (175)
Q Consensus 138 VVGGTG~Fr~ArGya~~~t~~~~~~~~v~e~~v~v~ 173 (175)
|.||||.|+.|+|.+.++++.+. .-++|.+||.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P---~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP---TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT---TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC---ceEEEEEEEe
Confidence 99999999999999999998773 2477777764
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.52 E-value=1.5e-06 Score=69.66 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCcceEEEEecccccCCCCCCCceeeeeEEEEeec---CCCcceEEEEEEEEEecCCcCCceEEEEcCCCCCCCceeeEE
Q 043734 62 AMFGSVFVMDNPLTMTPDPNSTVIGRAQGIYAMSS---QQDEFSLLMTLTYGFTSGPYNGSSFSVLGRNPVMSEVREMPI 138 (175)
Q Consensus 62 ~~FG~~~v~Dd~ltegp~~~S~~VGraqG~~~~~~---s~~~~~~~~~~t~vF~~g~~~GSTL~v~G~~~~~~~~~E~aV 138 (175)
...|+++.|+++|+++.. -+.||...|+-++.. ...+..+--..++.|.+ .| +|+++|..-.-+ ..-+||
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~e-Ds~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYITYE-DSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEETTB-CEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceeccC-ceeEEE
Confidence 459999999999999875 788999999987322 12333444556778865 46 999999985543 467999
Q ss_pred eecccceeceEeEEEEEEEEe
Q 043734 139 VGGTGIFRLARGYCLAKTSSM 159 (175)
Q Consensus 139 VGGTG~Fr~ArGya~~~t~~~ 159 (175)
+||||.|+.|+|-+.+..+-+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999998887765
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=42.51 E-value=1e+02 Score=22.94 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=50.6
Q ss_pred CCceeeeeEEEEeecCC-CcceEEEEEEEE-EecCCcCCc-eEEEEcCCCCCCCceeeEEee--cccceeceEeEEEEEE
Q 043734 82 STVIGRAQGIYAMSSQQ-DEFSLLMTLTYG-FTSGPYNGS-SFSVLGRNPVMSEVREMPIVG--GTGIFRLARGYCLAKT 156 (175)
Q Consensus 82 S~~VGraqG~~~~~~s~-~~~~~~~~~t~v-F~~g~~~GS-TL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~t 156 (175)
-.+.|+.++-++ .+-. ++...++.+..+ =+-...+|| .|+-.|..........+-||= |||++...+|-..++.
T Consensus 45 G~leGts~~~~L-~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYL-MSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEE-EEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEE-EEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 357888888888 4443 444444433321 122345663 333444444444457889998 9999999999987753
Q ss_pred EEecCCCeEEEEEEE
Q 043734 157 SSMDQMDAVIGYNVT 171 (175)
Q Consensus 157 ~~~~~~~~v~e~~v~ 171 (175)
. +.+..-++|+..
T Consensus 124 ~--~~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 T--ENGQANYQITLQ 136 (138)
T ss_dssp C--STTEEEEEEEEE
T ss_pred e--cCCceEEEEEEe
Confidence 2 223344555544
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=31.51 E-value=1.6e+02 Score=21.92 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=51.1
Q ss_pred CCceeeeeEEEEeecCC--CcceEEEEEEEE-EecCCcCCc-eEEEEcCCCCCCCceeeEEee--cccceeceEeEEEEE
Q 043734 82 STVIGRAQGIYAMSSQQ--DEFSLLMTLTYG-FTSGPYNGS-SFSVLGRNPVMSEVREMPIVG--GTGIFRLARGYCLAK 155 (175)
Q Consensus 82 S~~VGraqG~~~~~~s~--~~~~~~~~~t~v-F~~g~~~GS-TL~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~ 155 (175)
-.+.|+.++-++ .+-. ++...++.+..+ =+-+..+|| .|+-.|..........+-||= |||++...+|-..++
T Consensus 41 G~leGts~~~~L-~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~ 119 (141)
T 2ooj_A 41 GELEARSQGEML-SAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAIS 119 (141)
T ss_dssp SSEEEEEEEEEE-EEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eeEEEEEEEEEE-EEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 357788888888 4543 444444444321 122345663 344445555545567889998 999999999998775
Q ss_pred EEEecCCCeEEEEEEEE
Q 043734 156 TSSMDQMDAVIGYNVTL 172 (175)
Q Consensus 156 t~~~~~~~~v~e~~v~v 172 (175)
.. + +..-++||..+
T Consensus 120 ~~--~-G~h~y~ldy~l 133 (141)
T 2ooj_A 120 IE--N-GQHFYEFSFCF 133 (141)
T ss_dssp EE--T-TEEEEEEEEEE
T ss_pred Ec--C-CeEEEEEEEEc
Confidence 43 2 33345555443
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=28.16 E-value=31 Score=29.11 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=36.9
Q ss_pred CcceEEEEEEEEEecCCcCCceEEEE-cCCCCCCCceeeEEeecccce---------eceEeEEEEEE
Q 043734 99 DEFSLLMTLTYGFTSGPYNGSSFSVL-GRNPVMSEVREMPIVGGTGIF---------RLARGYCLAKT 156 (175)
Q Consensus 99 ~~~~~~~~~t~vF~~g~~~GSTL~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArGya~~~t 156 (175)
....|...|--.|+++.++||--++. |.-.+. -..-+-|=|||.| |.|.||-..+.
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslnir--lgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIR--LGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEEE--EEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEEE--eccCceeeeccccccccchhhheeccceEEEEe
Confidence 34567778888999999999866653 222211 1222556688888 78888876553
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=14.67 E-value=81 Score=20.30 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.6
Q ss_pred ccccCCCCCCCceeee
Q 043734 73 PLTMTPDPNSTVIGRA 88 (175)
Q Consensus 73 ~ltegp~~~S~~VGra 88 (175)
.|+.+|+.++++++++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 5889999999998874
No 7
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=14.48 E-value=50 Score=21.06 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=13.4
Q ss_pred ccccCCCCCCCceeee
Q 043734 73 PLTMTPDPNSTVIGRA 88 (175)
Q Consensus 73 ~ltegp~~~S~~VGra 88 (175)
.|+.+|+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999875
No 8
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=12.58 E-value=1.2e+02 Score=19.58 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.4
Q ss_pred ccccCCCCCCCceeee
Q 043734 73 PLTMTPDPNSTVIGRA 88 (175)
Q Consensus 73 ~ltegp~~~S~~VGra 88 (175)
.|+.+|+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5788898888888753
No 9
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=11.26 E-value=96 Score=23.42 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=13.9
Q ss_pred CcchhhHHHHHHHHHHhhccc--cccCCcceEEEEEeeccCCCCCceeee
Q 043734 1 MALSGKFLFLVGVLTLFCTTE--AMKSKVTRMQFYMHDIVSGPTATAVPV 48 (175)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~--~~~~~k~~l~fY~Hd~~~g~n~t~~~v 48 (175)
|++.+.+++.+..+.+.+.++ ...+.|--|.-..=|+..|..+..+.|
T Consensus 1 m~~~~~~l~~la~l~~~s~a~p~~~~~sk~PLTtHVLDt~~G~PA~gv~V 50 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAV 50 (147)
T ss_dssp -----------------------------CCEEEEEEETTTTEECCSCEE
T ss_pred CchHHHHHHHHHHHHhhcccCCcCCCCCCCCeEEEEEeCCCCcCCCCCEE
Confidence 665555554333222222211 122233446666678888865665554
No 10
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=9.85 E-value=5.8e+02 Score=19.20 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=35.5
Q ss_pred EEEEcCCCCCCCceeeEEeecccceeceEe-EEEE-EEEEecCCCeEEEEEEEEEeC
Q 043734 121 FSVLGRNPVMSEVREMPIVGGTGIFRLARG-YCLA-KTSSMDQMDAVIGYNVTLLHY 175 (175)
Q Consensus 121 L~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG-ya~~-~t~~~~~~~~v~e~~v~v~hy 175 (175)
.++-|+.....-.-+.|+-.. .+++-+| |... +.+.-+.+..+.=+|.++.||
T Consensus 86 ySFC~~lKGEti~t~~p~s~~--g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~ 140 (144)
T 2e56_A 86 YSFCRALKGETVNTTISFSFK--GIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQ 140 (144)
T ss_dssp CGGGGCCTTCCEEEEEEEEEC--CCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ceeeccccCceEEEeeecccC--cEecCCCcEEEEEEEecCCchheEEEeeEEEEEc
Confidence 344555554444567777776 6889999 5433 333334667899999999997
Done!