BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043735
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 57/349 (16%)
Query: 20 TPFVTVTCIVAAMGGLIFGYDIG-ISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYN 78
+ ++ +VA +GGL+FGYD ISG V S+ + P + ANS +C
Sbjct: 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA--PQNLSESAANSLLG-FC--- 60
Query: 79 XXXXXXXXXXXXXXXXXXXXXXXXVTRKFGRKKSMLFGGVLFFAGALINGF--------- 129
+ +FGR+ S+ VLFF + + +
Sbjct: 61 -------VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSIN 113
Query: 130 ---------AQGVWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITI 180
A V ++ R++ G G+G A+ P+Y++E+AP RG L Q +I
Sbjct: 114 PDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173
Query: 181 GILIANVLNYFFAKI-KGGW----GWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQR 235
G L+ +NYF A+ W GWR +PAL+ + +P++P ++ RG++
Sbjct: 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ 233
Query: 236 DEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTM--------A 287
++A LRKI G N L A++A ++++H + RK L M
Sbjct: 234 EQAEGILRKIMG--------NTL--ATQAVQEIKHSLDH--GRKTGGRLLMFGVGVIVIG 281
Query: 288 ILIPFFQQLTGINVIMFYAPVLFNTIGFGNDASLMSAVITGLVNACATL 336
+++ FQQ GINV+++YAP +F T+G D +L+ +I G++N T+
Sbjct: 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGG 207
F N + PL +M+ + R + + + I +VLN+F ++ GG R++L
Sbjct: 99 AFENIAFPLTNMKMSKEEIRKRVE-----EVAKILDIHHVLNHFPRELSGGQQQRVALAR 153
Query: 208 AMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRG 247
A+V SL+L D P S ++ RD AR +++++
Sbjct: 154 ALVKD-----PSLLLLDEPFSNLDARMRDSARALVKEVQS 188
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGG 207
F N + PL +M+ + R + + + I +VLN+F ++ G R++L
Sbjct: 99 AFENIAFPLTNMKMSKEEIRKRVE-----EVAKILDIHHVLNHFPRELSGAQQQRVALAR 153
Query: 208 AMVPALIITIGSLVLPDTPNSMIERGQRDEAREKLRKIRG 247
A+V SL+L D P S ++ RD AR +++++
Sbjct: 154 ALVKD-----PSLLLLDEPFSNLDARMRDSARALVKEVQS 188
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 170 LNIGFQLSITIGILIANVLNYFFAKIKG-GWGW 201
L I F ++ I LIA N+ FAKI+G GWGW
Sbjct: 787 LMIAFLIAQLIATLIAVYANWEFAKIRGIGWGW 819
>pdb|2A47|A Chain A, Crystal Structure Of Amfp486 H199t
Length = 238
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 9 NGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDI--------GISGGVTSMPSFLKRFFPS 60
GNGK Y G T VT +A G L F +DI + TSMP + K+ FP
Sbjct: 43 EGNGKPYEGTQTSTFKVT--MANGGPLAFSFDILSTVFXNRCFTAYPTSMPDYFKQAFPD 100
>pdb|2A48|A Chain A, Crystal Structure Of Amfp486 E150q
Length = 238
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 9 NGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDI--------GISGGVTSMPSFLKRFFPS 60
GNGK Y G T VT +A G L F +DI + TSMP + K+ FP
Sbjct: 43 EGNGKPYEGTQTSTFKVT--MANGGPLAFSFDILSTVFXNRCFTAYPTSMPDYFKQAFPD 100
>pdb|2A46|A Chain A, Crystal Structures Of Amfp486, A Cyan Fluorescent Protein
From Anemonia Majano, And Variants
Length = 238
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 9 NGNGKGYPGKLTPFVTVTCIVAAMGGLIFGYDI--------GISGGVTSMPSFLKRFFPS 60
GNGK Y G T VT +A G L F +DI + TSMP + K+ FP
Sbjct: 43 EGNGKPYEGTQTSTFKVT--MANGGPLAFSFDILSTVFXNRCFTAYPTSMPDYFKQAFPD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,993,742
Number of Sequences: 62578
Number of extensions: 343792
Number of successful extensions: 875
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 19
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)