Query 043735
Match_columns 336
No_of_seqs 253 out of 2554
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 13:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.5E-31 2.6E-35 242.7 27.5 300 19-334 6-328 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 4.2E-27 1.5E-31 215.0 16.1 243 72-335 55-305 (451)
3 3o7q_A L-fucose-proton symport 99.9 1.1E-25 3.8E-30 204.9 21.1 227 75-335 56-312 (438)
4 2gfp_A EMRD, multidrug resista 99.9 6.8E-24 2.3E-28 189.3 12.0 222 73-334 28-251 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 2.8E-20 9.4E-25 171.8 19.8 145 72-219 46-193 (491)
6 2xut_A Proton/peptide symporte 99.8 5.6E-17 1.9E-21 150.9 23.0 141 77-220 51-196 (524)
7 2cfq_A Lactose permease; trans 99.6 1.2E-16 4E-21 144.6 2.8 146 75-224 38-189 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 7.1E-13 2.4E-17 120.5 19.5 145 75-222 283-433 (451)
9 2cfq_A Lactose permease; trans 99.5 4.6E-13 1.6E-17 121.0 13.0 146 78-226 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 4.2E-12 1.4E-16 115.0 16.5 137 76-217 291-427 (438)
11 4gc0_A D-xylose-proton symport 99.4 7.8E-12 2.7E-16 115.1 14.8 152 76-227 308-468 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 1E-11 3.6E-16 114.3 14.1 141 76-220 315-469 (491)
13 2gfp_A EMRD, multidrug resista 99.0 2E-10 6.8E-15 101.9 4.4 126 76-207 231-361 (375)
14 2xut_A Proton/peptide symporte 98.8 2E-08 7E-13 93.0 10.5 114 81-194 336-466 (524)
15 2g9p_A Antimicrobial peptide l 69.0 2.7 9.3E-05 19.6 1.5 15 99-113 2-16 (26)
16 4dve_A Biotin transporter BIOY 27.4 1.6E+02 0.0055 22.8 6.2 25 86-110 99-123 (198)
17 3arc_T Photosystem II reaction 27.2 58 0.002 16.8 2.4 11 217-227 18-28 (32)
18 3hd6_A Ammonium transporter RH 23.6 4E+02 0.014 23.9 8.9 25 165-189 340-364 (490)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.5e-31 Score=242.69 Aligned_cols=300 Identities=27% Similarity=0.506 Sum_probs=229.3
Q ss_pred CchHHHHHHHHHHHHHHHHhhhccccccccchhhHHhhhccchhhhcccCCCCcccccCCCchhHHHHHHHHHHHHHHHH
Q 043735 19 LTPFVTVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQANSSTNQYCQYNSETLTLFTSSLYLAALLSSL 98 (336)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 98 (336)
..++.+.++++++++.+.+|||.++++.. +|.+.+.+.... +...+.+.++.+++.+++.+|..+|++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33567888888899999999999888754 466666552111 111134456789999999999999999
Q ss_pred HhHHhhhhhchhHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhhhhhhHHHHhhh
Q 043735 99 VASSVTRKFGRKKSMLFGGVLFFAGALING------------------FAQGVWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (336)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~g~~~~~~~~~~~~~~~~ 160 (336)
++|+++||+|||++++++.+++.+++++++ .++++++++++|+++|++.|...+..+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 47899999999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhHHHHhhhHHHHHHHHHhhcccCCChHHHHhcCCh
Q 043735 161 MAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKG-----GWGWRLSLGGAMVPALIITIGSLVLPDTPNSMIERGQR 235 (336)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (336)
+.|+++|++..+..+.+..+|..+++.++.......+ .+.||+.+....++.++..+..+++||+|+|+..+++.
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~ 233 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ 233 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch
Confidence 9999999999999999999999999888776654321 35788888888888888888888999999999999999
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHHhcCC
Q 043735 236 DEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFNTIGF 315 (336)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 315 (336)
+++++.+++...+++.+++..+.++..+.+++. ..... ....++.........+....+.+.+.+|.|.+.+..+.
T Consensus 234 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 234 EQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred hHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 999888777654433332222222221111111 11111 12334455666666777788888899999999999988
Q ss_pred CCcHHHHHHHHHhHhhhee
Q 043735 316 GNDASLMSAVITGLVNACA 334 (336)
Q Consensus 316 s~~~~~~~~~~~~~~~~~~ 334 (336)
+.........+.++..+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTF 328 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 8877776666666555443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=4.2e-27 Score=214.96 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=180.2
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGF----AQGVWMLIVGRLLLGFGI 147 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~g~~~ 147 (336)
.+++ .+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ +++++.++++|++.|++.
T Consensus 55 ~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 133 (451)
T 1pw4_A 55 VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 133 (451)
T ss_dssp TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHH
T ss_pred HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHh
Confidence 5556 78999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred hhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHhhhHHHHHHHHHh-hcccCCC
Q 043735 148 GFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWG-WRLSLGGAMVPALIITIG-SLVLPDT 225 (336)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~e~ 225 (336)
+...+....++.|++|+++|+++.++.+.+..+|..++|.+++.+.+. .+ ||+.|++.+++.++..+. .+++||+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999887753 46 999999888776655444 4667887
Q ss_pred hHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhh-ccccchhHHHHHHHHHHHHHhhchhHHHH
Q 043735 226 PNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNL-LKRKYRPHLTMAILIPFFQQLTGINVIMF 304 (336)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (336)
|+....+++++. .+ +.+.+. ++ +++++.+.++. .+...+++.++...+..++.....+....
T Consensus 211 ~~~~~~~~~~~~-----------~~-~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 211 PQSCGLPPIEEY-----------KN-DYPDDY-NE----KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp STTTCCCSCTTT-----------CC-C------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCChhhh-----------cc-cccccc-hh----hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 753211111000 00 000000 00 00011111221 11222223344444455555556677888
Q ss_pred cHHHHHHh-cCCCCcHHHHHHHHHhHhhheec
Q 043735 305 YAPVLFNT-IGFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 305 ~~~~~~~~-~G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
+.|.++++ .|++..+++...++.+++.+++.
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 305 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999876 89999999998888888777653
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.1e-25 Score=204.85 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=173.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALIN---GFAQGVWMLIVGRLLLGFGIGFAN 151 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~g~~~~~~~ 151 (336)
+|+|..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++ .++++++.++++|++.|++.+...
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 135 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE 135 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhh
Confidence 49999999999999999999999999999999999999999999999999998 888999999999999999999999
Q ss_pred hhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhh-cccCC----------------c------hhHHHHhhh
Q 043735 152 QSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFA-KIKGG----------------W------GWRLSLGGA 208 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~----------------~------~w~~~~~~~ 208 (336)
+....++.|++|+++|+++.++.+.+..+|..++|.+++.+. +..+. + +||+.|++.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999887 43221 0 199999776
Q ss_pred HHHHHHHHHhhcc--cCCChHHHHhcCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHH
Q 043735 209 MVPALIITIGSLV--LPDTPNSMIERGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTM 286 (336)
Q Consensus 209 ~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (336)
+++.++..+..++ .||+++.. ++ + +++++.+.+++++++++. ++
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~---~~--------------~-------------~~~~~~~~~~~~~~~~~~----~~ 261 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSDN---HS--------------D-------------AKQGSFSASLSRLARIRH----WR 261 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTC---CC--------------C-------------SSTTSHHHHHHHHTTCSH----HH
T ss_pred HHHHHHHHHHHHHHcCCcccccc---cc--------------c-------------ccccchhhhHHHHHhChH----HH
Confidence 6665544444333 35543210 00 0 000111123444554442 23
Q ss_pred HHHHHHHHHhhchhHHHHcHHHH-HHhc-CCCCcHHHHHHHHHhHhhheec
Q 043735 287 AILIPFFQQLTGINVIMFYAPVL-FNTI-GFGNDASLMSAVITGLVNACAT 335 (336)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-G~s~~~~~~~~~~~~~~~~~~~ 335 (336)
...+..++..........+.|.+ +++. |++..+++...++..+..+++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 312 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH
Confidence 33333444444556677888888 7665 9999999998888887776653
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=6.8e-24 Score=189.28 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=175.8
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhh
Q 043735 73 QYCQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQ 152 (336)
Q Consensus 73 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~ 152 (336)
+++|.|.++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH-hhcccCCChHHHHh
Q 043735 153 SVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI-GSLVLPDTPNSMIE 231 (336)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ 231 (336)
....++.|++|+++|+++.+..+.+..+|..++|.+++.+.+ ..+||+.+++.++..++..+ ..+++||+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD-- 182 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--
Confidence 999999999999999999999999999999999999998876 35799999987777666555 345677765310
Q ss_pred cCChHHHHHHHHHHcCCCcchHHHHHHHHHHHhccccccchhhhccccchhHHHHHHHHHHHHHhhchhHHHHcHHHHHH
Q 043735 232 RGQRDEAREKLRKIRGVNDVDEEFNDLVAASEASKQVEHPWGNLLKRKYRPHLTMAILIPFFQQLTGINVIMFYAPVLFN 311 (336)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (336)
+ ++++.+.++++.++++ ..+...+..++..........+.|.+++
T Consensus 183 -~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T 2gfp_A 183 -A------------------------------PRTRLLTSYKTLFGNS----GFNCYLLMLIGGLAGIAAFEACSGVLMG 227 (375)
T ss_dssp -C------------------------------CCCCTTTCSTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCSCSSH
T ss_pred -c------------------------------ccccHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011122334444432 2333333344444455666777777776
Q ss_pred h-cCCCCcHHHHHHHHHhHhhhee
Q 043735 312 T-IGFGNDASLMSAVITGLVNACA 334 (336)
Q Consensus 312 ~-~G~s~~~~~~~~~~~~~~~~~~ 334 (336)
+ .|++..+++...+..+++.+++
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5 7888888888888777776654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=2.8e-20 Score=171.83 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=131.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhHHhhhh-hchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Q 043735 72 NQYCQYNSETLTLFTSSLYLAALLSSLVASSVTRK-FGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 72 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~ 150 (336)
++++|+|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++++.++++|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh
Q 043735 151 NQSVPLYLSEMAPYKY--RGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS 219 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (336)
.+....++.|++|+++ |+.+.+.++.+.++|..++|.+++.+.+. .|||+.|++.++..++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 67788889999999999999999998873 579999988766655544443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.77 E-value=5.6e-17 Score=150.92 Aligned_cols=141 Identities=15% Similarity=0.244 Sum_probs=127.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHhhhhh-chhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhhhhH
Q 043735 77 YNSETLTLFTSSLYLAALLSSLVASSVTRKF-GRKKSMLFGGVLFFAGALINGFAQ-GVWMLIVGRLLLGFGIGFANQSV 154 (336)
Q Consensus 77 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~g~~~~~~~~~~ 154 (336)
++..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++.+++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred HHHhhhcCCCccchhHHHH---HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 155 PLYLSEMAPYKYRGALNIG---FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
..++.|++|+++|+++.+. ++.+.++|..++|.+++.+.+. .+|++.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8899999999999999988763 5799999887777665554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=1.2e-16 Score=144.64 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=100.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHH---HHHHhhhhH-HHHHHHHHHHhhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGA---LINGFAQGV-WMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~-~~~~~~r~l~g~~~~~~ 150 (336)
+|+|..+.+++.+...++..++++++|+++||+|||+++.++.++.++.. ....+.+.. ..+...+.+.+++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999998887765532 111222221 12344566666655554
Q ss_pred hhhHHHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhcccCC
Q 043735 151 NQSVPLYLSEMAPY--KYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVLPD 224 (336)
Q Consensus 151 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (336)
++.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+|++.|++.++..++..+..++.+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 44444444444433 345666777777778899999999988875 36899998776665544444444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=7.1e-13 Score=120.51 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=123.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhHHhhhhh--chhHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHhhhhhh
Q 043735 75 CQYNSETLTLFTSSLYLAALLSSLVASSVTRKF--GRKKSMLFGGVLFF-AGALINGFA--QGVWMLIVGRLLLGFGIGF 149 (336)
Q Consensus 75 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~~~~~r~l~g~~~~~ 149 (336)
+|++..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999888877776 666666555 3677777888899998888
Q ss_pred hhhhHHHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhccc
Q 043735 150 ANQSVPLYLSEMAPYKYRGALNIGFQLSITI-GILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSLVL 222 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (336)
..+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+. .||+..+++.++..++..+..++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999 999999999999884 468888887777766665555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.46 E-value=4.6e-13 Score=120.96 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=119.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043735 78 NSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVPLY 157 (336)
Q Consensus 78 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~~~ 157 (336)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888999999999999999999999998888888887777777777777777788888777777777889
Q ss_pred hhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhh-cccCCCh
Q 043735 158 LSEMAPYKYRGALNIG-FQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGS-LVLPDTP 226 (336)
Q Consensus 158 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (336)
+.|.+|++.|+.+.+. ++....+|+.++|.+.+.+.+. .|+...|.+.++..++..+.. ++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 5888889999999999988763 468888887777666655544 4456654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=4.2e-12 Score=115.04 Aligned_cols=137 Identities=13% Similarity=0.021 Sum_probs=112.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhhhhHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQGVWMLIVGRLLLGFGIGFANQSVP 155 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~g~~~~~~~~~~~ 155 (336)
|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++. -++.|++.+..++...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999888888777665544 4888899998999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHH
Q 043735 156 LYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITI 217 (336)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (336)
.+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..+++.++..++..+
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHH
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHH
Confidence 9999999876 888887766 566999999999999987432 166666655444443333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.37 E-value=7.8e-12 Score=115.06 Aligned_cols=152 Identities=16% Similarity=0.043 Sum_probs=105.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhhh-hhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVLFFAGALINGFAQ----GVWMLIVGRLLLGFG-IGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~r~l~g~~-~~~~ 150 (336)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++..++...+ ....
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 55556666777788888999999999999999999999999888888776654321 112222222222222 2223
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc---CCchhHHHHhhhHHHHHHHHHh-hcccCCCh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIK---GGWGWRLSLGGAMVPALIITIG-SLVLPDTP 226 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (336)
.+..+.+.+|.+|.+.|+++.++......+++.+++.+.+.+.+.. ...++.+.|++.++++++..+. ++++||++
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999999999999887776654311 0123445566666666555554 46899986
Q ss_pred H
Q 043735 227 N 227 (336)
Q Consensus 227 ~ 227 (336)
.
T Consensus 468 g 468 (491)
T 4gc0_A 468 G 468 (491)
T ss_dssp T
T ss_pred C
Confidence 3
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=1e-11 Score=114.26 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=109.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHH
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSML-----FGGVLFFAGALINGFAQ---------GVWMLIVGRL 141 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~r~ 141 (336)
+.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..... +.+.+.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 445466778888889999999999999999999987654 66777777766555532 6677778889
Q ss_pred HHhhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhhhHHHHHHHHHhhc
Q 043735 142 LLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGGAMVPALIITIGSL 220 (336)
Q Consensus 142 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (336)
+.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+. ++.+.+...+...++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999999999999998887753 455566665655555444443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.99 E-value=2e-10 Score=101.87 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=98.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhHHhhhhhchhHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHhhhhhhh
Q 043735 76 QYNSETLTLFTSSLYLAALLSSLVASSVTRKFGRKKSMLFGGVL-FFAGAL--INGF--AQGVWMLIVGRLLLGFGIGFA 150 (336)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~i~~~--~~~~--~~~~~~~~~~r~l~g~~~~~~ 150 (336)
|.+..+.+++.+...++..++.++.+++.||+|||. ..+..+ ...+.. .... .++.+.+.+..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 778889999999999999999999999999999833 223322 222221 1222 236677778888999999999
Q ss_pred hhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHhh
Q 043735 151 NQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAKIKGGWGWRLSLGG 207 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~w~~~~~~ 207 (336)
.+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+. .++...+..
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~ 361 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLM 361 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHH
Confidence 9999999999998 8899999999999999999999988887652 356655554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.79 E-value=2e-08 Score=93.00 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHhh----hhhch----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 043735 81 TLTLFTSSLYLAALLSSLVASSVT----RKFGR----KKSMLFGGVLFFAGALINGFA---------QGVWMLIVGRLLL 143 (336)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~~~g~l~----dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~ 143 (336)
..+++.....++..++.++.+++. ||.|+ ++.+..+.++.+++.++..+. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777664 55543 345667777777777666653 2566777888999
Q ss_pred hhhhhhhhhhHHHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043735 144 GFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILIANVLNYFFAK 194 (336)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 194 (336)
|++.+...+....++.|..|+++||+++++++....+|..++|.+.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998876
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.98 E-value=2.7 Score=19.63 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=11.9
Q ss_pred HhHHhhhhhchhHHH
Q 043735 99 VASSVTRKFGRKKSM 113 (336)
Q Consensus 99 ~~g~l~dr~Grr~~l 113 (336)
++|.+..++|||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468899999998753
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.42 E-value=1.6e+02 Score=22.77 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhchh
Q 043735 86 TSSLYLAALLSSLVASSVTRKFGRK 110 (336)
Q Consensus 86 ~~~~~~~~~i~~~~~g~l~dr~Grr 110 (336)
+.-+.+++.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456778888889999999987543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=27.16 E-value=58 Score=16.79 Aligned_cols=11 Identities=9% Similarity=0.353 Sum_probs=6.9
Q ss_pred HhhcccCCChH
Q 043735 217 IGSLVLPDTPN 227 (336)
Q Consensus 217 ~~~~~~~e~~~ 227 (336)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33456788874
No 18
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=23.55 E-value=4e+02 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=15.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 043735 165 KYRGALNIGFQLSITIGILIANVLN 189 (336)
Q Consensus 165 ~~r~~~~~~~~~~~~~g~~~~~~l~ 189 (336)
+.---+.++...+..+|.+..++.+
T Consensus 340 DD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 340 QDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred CccccchHHhhHHHHHHHHHHHHHh
Confidence 3334566777777777776665544
Done!