BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043737
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 243 PDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFS 302
D+PE A ++ KEC G PL + +G + + P WE+ ++ L++ +K R+
Sbjct: 310 ADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFK------RI-- 359
Query: 303 RLKISYDFLPGDET 316
R SYD+ DE
Sbjct: 360 RKSSSYDYEALDEA 373
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 244 DIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSR 303
D+PE A ++ KEC G PL + +G + + P WE+ ++ L++ +K R+ R
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFK------RI--R 354
Query: 304 LKISYDFLPGDET 316
SYD+ DE
Sbjct: 355 KSSSYDYEALDEA 367
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 244 DIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSR 303
D+P A ++ KEC G PL + +G + + P W AY ++++ F R
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRW----------AYYLRQLQNKQFKR 352
Query: 304 LK--ISYDFLPGDET 316
++ SYD+ DE
Sbjct: 353 IRKSSSYDYEALDEA 367
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 244 DIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSR 303
D+P A ++ KEC G PL + +G + + P W AY ++++ F R
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRW----------AYYLRQLQNKQFKR 359
Query: 304 LK--ISYDFLPGDET 316
++ SYD+ DE
Sbjct: 360 IRKSSSYDYEALDEA 374
>pdb|3K3W|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Orthorhombic Form
pdb|3ML0|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
Faecalis In Tetragonal Form
Length = 551
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 190 RTSASNKTVFTARELEVCGQMEAHKSFKVERLG-----YEDAWKLFEEKVGKEILDSHPD 244
R + +N+ VF A+ +E C M +S +R G YED KL+E K + +H D
Sbjct: 475 RGTENNRVVFDAKGVEFCDAMPPGQSGFTDRNGVRSPHYEDQLKLYENFECKTMDVTHAD 534
Query: 245 IPELAET 251
I A++
Sbjct: 535 IRRNAQS 541
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 45 EVPQPV------PENLVDERPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTT 98
E P+PV P++ D+ + +V LQ D + +E+ G V + GMGE+
Sbjct: 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEE-DPTFHAHTDEETGQVIIGGMGELHLDI 460
Query: 99 LLTQINKKF 107
L+ ++ K+F
Sbjct: 461 LVDRMKKEF 469
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 45 EVPQPV------PENLVDERPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTT 98
E P+PV P++ D+ + +V LQ D + +E+ G V + GMGE+
Sbjct: 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEE-DPTFHAHTDEETGQVIIGGMGELHLDI 460
Query: 99 LLTQINKKF 107
L+ ++ K+F
Sbjct: 461 LVDRMKKEF 469
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 45 EVPQPV------PENLVDERPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTT 98
E P+PV P++ D+ + +V LQ D + +E+ G V + GMGE+
Sbjct: 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEE-DPTFHAHTDEETGQVIIGGMGELHLDI 460
Query: 99 LLTQINKKF 107
L+ ++ K+F
Sbjct: 461 LVDRMKKEF 469
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 45 EVPQPV------PENLVDERPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTT 98
E P+PV P++ D+ + +V LQ D + +E+ G V + GMGE+
Sbjct: 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEE-DPTFHAHTDEETGQVIIGGMGELHLDI 460
Query: 99 LLTQINKKF 107
L+ ++ K+F
Sbjct: 461 LVDRMKKEF 469
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 67 LQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVI----WVVA 122
LQ FDR+ ++ + + G+ VGK+TL+ ++ KK + D + WV
Sbjct: 104 LQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV 163
Query: 123 SKDLQL 128
K+L+L
Sbjct: 164 GKELEL 169
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQIN-KKFLHTP------------NDFDFV 117
F R+WR ++ ++ + G+ GKTT+L Q + + +HT N+ F+
Sbjct: 5 FTRIWRLFNHQEHKVI-IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL 63
Query: 118 IWVVASKD 125
+W + ++
Sbjct: 64 MWDIGGQE 71
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQIN-KKFLHTP------------NDFDFV 117
F R+WR ++ ++ + G+ GKTT+L Q + + +HT N+ F+
Sbjct: 5 FTRIWRLFNHQEHKVI-IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL 63
Query: 118 IWVVASKD 125
+W + ++
Sbjct: 64 MWDIGGQE 71
>pdb|4G3H|A Chain A, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|B Chain B, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|C Chain C, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|D Chain D, Crystal Structure Of Helicobacter Pylori Arginase
Length = 330
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 231 EEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264
++K+G LD+H DI ++ +K G+PL ++
Sbjct: 107 DKKIGILYLDAHADIHTAYDSDSKHIHGMPLGMV 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,531,213
Number of Sequences: 62578
Number of extensions: 486321
Number of successful extensions: 1395
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 26
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)