Query 043737
Match_columns 371
No_of_seqs 228 out of 2349
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.7E-55 1E-59 436.9 29.3 365 3-369 97-471 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1E-47 2.2E-52 347.1 18.1 282 67-351 1-286 (287)
3 PLN03210 Resistant to P. syrin 100.0 1E-34 2.2E-39 304.4 25.9 284 61-369 183-483 (1153)
4 PRK04841 transcriptional regul 99.7 6.3E-15 1.4E-19 153.6 23.7 275 57-368 9-308 (903)
5 PRK00411 cdc6 cell division co 99.7 3.1E-14 6.7E-19 134.4 24.1 296 58-369 26-357 (394)
6 COG2909 MalT ATP-dependent tra 99.6 5.7E-14 1.2E-18 136.1 20.2 275 58-368 15-314 (894)
7 PF01637 Arch_ATPase: Archaeal 99.6 6.5E-15 1.4E-19 128.6 12.5 198 64-266 1-234 (234)
8 TIGR02928 orc1/cdc6 family rep 99.6 1.3E-12 2.7E-17 122.2 26.6 294 60-368 13-348 (365)
9 TIGR00635 ruvB Holliday juncti 99.5 6.4E-13 1.4E-17 121.0 18.0 272 62-369 4-288 (305)
10 TIGR03015 pepcterm_ATPase puta 99.5 1.4E-11 3E-16 110.2 24.7 182 81-270 41-242 (269)
11 PRK00080 ruvB Holliday junctio 99.5 1.9E-12 4.1E-17 118.8 17.7 258 60-369 23-309 (328)
12 COG2256 MGS1 ATPase related to 99.5 5.8E-12 1.3E-16 112.8 18.7 258 62-349 24-302 (436)
13 PF05729 NACHT: NACHT domain 99.4 5.1E-12 1.1E-16 104.2 12.0 144 84-235 1-164 (166)
14 COG3899 Predicted ATPase [Gene 99.4 1.1E-11 2.4E-16 125.9 15.6 265 64-340 2-332 (849)
15 PTZ00112 origin recognition co 99.3 1.1E-10 2.5E-15 114.5 20.2 292 60-368 753-1084(1164)
16 PRK13342 recombination factor 99.3 2.3E-10 4.9E-15 108.3 17.4 222 61-313 11-246 (413)
17 PRK07003 DNA polymerase III su 99.3 2.6E-10 5.5E-15 111.3 16.8 184 62-268 16-223 (830)
18 PRK06893 DNA replication initi 99.2 1.3E-10 2.8E-15 100.9 12.2 156 82-270 38-207 (229)
19 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.1E-10 2.4E-15 101.5 11.4 176 62-270 15-205 (226)
20 KOG2028 ATPase related to the 99.2 3E-09 6.6E-14 94.2 19.8 226 62-313 138-395 (554)
21 PRK12402 replication factor C 99.2 1.3E-09 2.7E-14 100.8 16.6 197 62-268 15-228 (337)
22 PRK14960 DNA polymerase III su 99.2 1.1E-09 2.4E-14 105.8 16.5 180 62-264 15-217 (702)
23 PF14516 AAA_35: AAA-like doma 99.1 1.6E-08 3.6E-13 92.6 22.5 272 60-353 9-317 (331)
24 PRK04195 replication factor C 99.1 3E-09 6.4E-14 102.7 18.3 247 61-350 13-272 (482)
25 COG3903 Predicted ATPase [Gene 99.1 1E-10 2.2E-15 105.6 7.4 270 81-367 12-289 (414)
26 COG1474 CDC6 Cdc6-related prot 99.1 1.2E-08 2.6E-13 94.1 21.1 204 59-266 14-238 (366)
27 PRK00440 rfc replication facto 99.1 3.7E-09 8E-14 96.9 17.2 183 62-267 17-204 (319)
28 PRK08727 hypothetical protein; 99.1 1.3E-09 2.8E-14 94.9 13.4 172 62-266 19-204 (233)
29 PRK14949 DNA polymerase III su 99.1 2.6E-09 5.7E-14 106.3 16.9 181 62-266 16-220 (944)
30 PRK14961 DNA polymerase III su 99.1 7E-09 1.5E-13 96.4 18.0 179 62-264 16-218 (363)
31 PTZ00202 tuzin; Provisional 99.1 2.3E-08 4.9E-13 91.8 20.6 193 21-234 227-434 (550)
32 PRK08084 DNA replication initi 99.1 1.8E-09 3.9E-14 94.1 13.2 176 62-270 22-213 (235)
33 PRK14963 DNA polymerase III su 99.1 1.3E-08 2.7E-13 97.9 19.2 193 62-265 14-216 (504)
34 PRK14957 DNA polymerase III su 99.1 7.7E-09 1.7E-13 99.6 16.7 183 62-268 16-223 (546)
35 PRK09087 hypothetical protein; 99.0 4.5E-09 9.7E-14 90.8 12.5 147 82-270 43-199 (226)
36 PRK14951 DNA polymerase III su 99.0 1.4E-08 3.1E-13 99.0 17.4 196 62-266 16-225 (618)
37 PRK14958 DNA polymerase III su 99.0 1.3E-08 2.9E-13 97.9 17.0 182 62-266 16-220 (509)
38 PLN03025 replication factor C 99.0 4.2E-09 9.1E-14 96.3 12.9 181 62-264 13-198 (319)
39 PRK14962 DNA polymerase III su 99.0 1.8E-08 4E-13 96.0 17.2 187 61-270 13-223 (472)
40 PRK12323 DNA polymerase III su 99.0 6.4E-09 1.4E-13 100.4 13.9 193 62-264 16-223 (700)
41 PF13401 AAA_22: AAA domain; P 99.0 4.5E-10 9.8E-15 88.8 5.2 117 82-203 3-125 (131)
42 PRK08691 DNA polymerase III su 99.0 1.2E-08 2.6E-13 99.6 15.7 191 62-267 16-221 (709)
43 PRK13341 recombination factor 99.0 1.3E-08 2.7E-13 101.6 16.2 175 61-266 27-217 (725)
44 PF00308 Bac_DnaA: Bacterial d 99.0 7E-09 1.5E-13 89.3 11.8 166 83-270 34-212 (219)
45 PRK14956 DNA polymerase III su 99.0 1.5E-08 3.3E-13 95.3 14.7 195 61-263 17-219 (484)
46 PRK07471 DNA polymerase III su 99.0 6.5E-08 1.4E-12 89.4 18.2 196 61-266 18-238 (365)
47 PRK07994 DNA polymerase III su 99.0 1.8E-08 3.9E-13 98.6 15.2 190 62-266 16-220 (647)
48 PRK06645 DNA polymerase III su 99.0 4.5E-08 9.8E-13 93.8 17.5 193 62-263 21-226 (507)
49 PF13173 AAA_14: AAA domain 98.9 3.1E-09 6.6E-14 83.6 8.0 120 83-226 2-127 (128)
50 PRK05642 DNA replication initi 98.9 1.2E-08 2.6E-13 88.9 12.4 155 83-270 45-212 (234)
51 TIGR02397 dnaX_nterm DNA polym 98.9 4.1E-08 8.8E-13 91.5 16.7 183 62-268 14-220 (355)
52 PRK14964 DNA polymerase III su 98.9 2.7E-08 5.8E-13 94.6 15.2 179 62-263 13-214 (491)
53 PF13191 AAA_16: AAA ATPase do 98.9 2.6E-09 5.6E-14 89.7 7.6 46 63-108 1-49 (185)
54 PRK08903 DnaA regulatory inact 98.9 9E-09 1.9E-13 89.5 11.2 173 62-271 18-204 (227)
55 PRK14952 DNA polymerase III su 98.9 5.4E-08 1.2E-12 94.7 17.5 192 62-268 13-222 (584)
56 PRK14969 DNA polymerase III su 98.9 3E-08 6.5E-13 96.1 15.8 182 62-266 16-221 (527)
57 PRK09112 DNA polymerase III su 98.9 3E-08 6.4E-13 91.1 14.7 196 61-266 22-240 (351)
58 PRK14959 DNA polymerase III su 98.9 4.4E-08 9.4E-13 95.2 16.4 196 62-270 16-225 (624)
59 cd00009 AAA The AAA+ (ATPases 98.9 9.5E-09 2.1E-13 82.5 10.2 123 65-204 1-130 (151)
60 PRK05564 DNA polymerase III su 98.9 6.1E-08 1.3E-12 88.4 16.6 176 62-264 4-188 (313)
61 PF05496 RuvB_N: Holliday junc 98.9 1.4E-08 3.1E-13 85.3 11.3 179 60-272 22-227 (233)
62 PRK05896 DNA polymerase III su 98.9 2.3E-08 4.9E-13 96.7 14.1 194 62-268 16-223 (605)
63 PRK14955 DNA polymerase III su 98.9 3.2E-08 6.9E-13 93.1 13.6 199 61-265 15-227 (397)
64 PRK07764 DNA polymerase III su 98.9 5.1E-08 1.1E-12 98.5 15.4 179 62-263 15-218 (824)
65 PRK07940 DNA polymerase III su 98.9 1.1E-07 2.5E-12 88.5 16.0 183 62-263 5-210 (394)
66 PRK09111 DNA polymerase III su 98.9 6.6E-08 1.4E-12 94.6 15.0 198 61-267 23-234 (598)
67 TIGR00678 holB DNA polymerase 98.8 1.4E-07 3E-12 79.5 14.4 159 73-261 3-186 (188)
68 COG2255 RuvB Holliday junction 98.8 3.8E-07 8.3E-12 78.6 16.6 252 61-350 25-311 (332)
69 PRK14970 DNA polymerase III su 98.8 1.5E-07 3.3E-12 87.9 15.5 180 62-264 17-207 (367)
70 PRK14087 dnaA chromosomal repl 98.8 6E-08 1.3E-12 92.3 12.8 170 83-270 141-323 (450)
71 PRK14965 DNA polymerase III su 98.8 2.3E-07 5.1E-12 91.1 16.5 183 62-268 16-223 (576)
72 PRK14954 DNA polymerase III su 98.8 1.8E-07 3.9E-12 91.8 15.4 194 62-261 16-223 (620)
73 PRK14953 DNA polymerase III su 98.8 2.6E-07 5.6E-12 88.6 16.1 183 62-267 16-221 (486)
74 PRK07133 DNA polymerase III su 98.8 1.7E-07 3.8E-12 92.4 14.9 190 62-266 18-220 (725)
75 TIGR01242 26Sp45 26S proteasom 98.7 1.9E-07 4E-12 87.1 13.8 171 62-260 122-328 (364)
76 PRK14950 DNA polymerase III su 98.7 3.7E-07 7.9E-12 90.1 16.5 196 61-268 15-223 (585)
77 PRK06647 DNA polymerase III su 98.7 7E-07 1.5E-11 87.1 18.1 192 62-266 16-220 (563)
78 TIGR03345 VI_ClpV1 type VI sec 98.7 1.9E-07 4.2E-12 95.4 14.7 183 62-260 187-390 (852)
79 PRK06620 hypothetical protein; 98.7 1.8E-07 3.8E-12 80.2 12.1 142 84-270 45-193 (214)
80 KOG2227 Pre-initiation complex 98.7 2.2E-06 4.9E-11 78.8 19.2 175 61-238 149-342 (529)
81 PRK03992 proteasome-activating 98.7 4.5E-07 9.8E-12 85.0 15.4 170 62-259 131-336 (389)
82 PRK08451 DNA polymerase III su 98.7 5.4E-07 1.2E-11 86.6 15.8 183 62-267 14-219 (535)
83 PRK06305 DNA polymerase III su 98.7 4.9E-07 1.1E-11 86.1 15.4 179 61-263 16-219 (451)
84 PF05621 TniB: Bacterial TniB 98.7 2.2E-06 4.7E-11 75.7 18.1 201 62-266 34-261 (302)
85 TIGR00362 DnaA chromosomal rep 98.7 8.2E-07 1.8E-11 84.1 15.4 163 83-267 136-311 (405)
86 COG3267 ExeA Type II secretory 98.7 1.9E-06 4.1E-11 73.4 15.7 195 69-269 38-248 (269)
87 KOG0989 Replication factor C, 98.6 1.2E-07 2.6E-12 82.5 8.6 186 58-261 32-225 (346)
88 PRK14948 DNA polymerase III su 98.6 9.5E-07 2.1E-11 87.1 16.0 195 62-267 16-223 (620)
89 PRK14971 DNA polymerase III su 98.6 7.8E-07 1.7E-11 87.7 15.4 178 62-263 17-219 (614)
90 PF10443 RNA12: RNA12 protein; 98.6 7.2E-06 1.6E-10 75.6 20.3 202 67-277 1-289 (431)
91 TIGR02639 ClpA ATP-dependent C 98.6 2.7E-07 5.9E-12 93.5 12.2 157 62-234 182-358 (731)
92 PRK00149 dnaA chromosomal repl 98.6 3.8E-07 8.2E-12 87.5 12.0 182 83-286 148-349 (450)
93 PRK05563 DNA polymerase III su 98.6 1.5E-06 3.3E-11 85.0 16.1 190 61-263 15-217 (559)
94 PRK14088 dnaA chromosomal repl 98.6 4.3E-07 9.3E-12 86.4 12.0 164 83-267 130-306 (440)
95 cd01128 rho_factor Transcripti 98.6 1.8E-07 3.9E-12 81.7 8.6 95 81-177 14-115 (249)
96 TIGR02903 spore_lon_C ATP-depe 98.6 1.5E-06 3.4E-11 85.9 15.8 203 61-269 153-398 (615)
97 PRK14086 dnaA chromosomal repl 98.6 2E-06 4.3E-11 83.5 15.9 163 84-268 315-490 (617)
98 PRK12422 chromosomal replicati 98.5 9.4E-07 2E-11 83.9 12.2 153 84-260 142-307 (445)
99 PRK07399 DNA polymerase III su 98.5 5.8E-06 1.3E-10 75.0 16.7 198 62-267 4-222 (314)
100 PHA02544 44 clamp loader, smal 98.5 1.1E-06 2.5E-11 80.3 12.3 146 61-232 20-171 (316)
101 KOG2543 Origin recognition com 98.5 2.5E-06 5.5E-11 76.6 13.2 167 60-233 4-192 (438)
102 PRK11331 5-methylcytosine-spec 98.5 1.1E-06 2.4E-11 82.0 11.4 108 62-177 175-284 (459)
103 TIGR02881 spore_V_K stage V sp 98.5 2.1E-06 4.5E-11 76.2 12.6 155 63-237 7-194 (261)
104 TIGR02880 cbbX_cfxQ probable R 98.5 4.5E-06 9.7E-11 74.9 14.3 132 85-236 60-210 (284)
105 PTZ00454 26S protease regulato 98.5 8.1E-06 1.8E-10 76.4 15.8 170 63-260 146-351 (398)
106 CHL00095 clpC Clp protease ATP 98.4 1.3E-06 2.8E-11 89.8 10.7 155 62-233 179-353 (821)
107 KOG1514 Origin recognition com 98.4 1E-05 2.2E-10 78.1 15.8 203 61-270 395-625 (767)
108 COG0593 DnaA ATPase involved i 98.4 1E-06 2.2E-11 81.3 8.9 154 83-261 113-281 (408)
109 PF05673 DUF815: Protein of un 98.4 1.1E-05 2.4E-10 69.1 14.4 47 61-107 26-76 (249)
110 TIGR03346 chaperone_ClpB ATP-d 98.4 4.3E-06 9.2E-11 86.2 14.1 157 62-234 173-349 (852)
111 PRK09376 rho transcription ter 98.4 9.4E-07 2E-11 80.8 8.0 100 74-177 159-268 (416)
112 CHL00181 cbbX CbbX; Provisiona 98.4 1.3E-05 2.9E-10 71.8 15.0 134 84-237 60-212 (287)
113 PRK10865 protein disaggregatio 98.4 4.9E-06 1.1E-10 85.5 13.6 157 62-234 178-354 (857)
114 PRK05707 DNA polymerase III su 98.4 1.3E-05 2.7E-10 73.2 14.8 93 165-265 106-202 (328)
115 TIGR00767 rho transcription te 98.4 2.7E-06 5.8E-11 78.2 10.0 95 81-177 166-267 (415)
116 PTZ00361 26 proteosome regulat 98.3 2.9E-06 6.3E-11 80.0 9.8 171 63-260 184-389 (438)
117 KOG0991 Replication factor C, 98.3 1E-05 2.2E-10 67.9 11.7 100 62-179 27-127 (333)
118 PRK11034 clpA ATP-dependent Cl 98.3 8.9E-06 1.9E-10 81.9 13.4 156 62-234 186-362 (758)
119 KOG0733 Nuclear AAA ATPase (VC 98.3 1.4E-05 3.1E-10 75.9 13.6 171 62-259 190-395 (802)
120 TIGR03689 pup_AAA proteasome A 98.3 9.9E-06 2.1E-10 77.6 12.8 163 62-236 182-380 (512)
121 TIGR01241 FtsH_fam ATP-depende 98.3 5.2E-05 1.1E-09 73.7 18.0 179 62-267 55-268 (495)
122 COG1373 Predicted ATPase (AAA+ 98.3 1.5E-05 3.3E-10 74.8 13.7 136 65-229 20-162 (398)
123 PRK08058 DNA polymerase III su 98.2 3E-05 6.5E-10 71.1 14.0 161 63-233 6-181 (329)
124 PRK08769 DNA polymerase III su 98.2 5.8E-05 1.3E-09 68.4 15.5 176 69-266 11-208 (319)
125 COG1222 RPT1 ATP-dependent 26S 98.2 4.3E-05 9.2E-10 68.4 14.1 193 64-287 153-393 (406)
126 TIGR00602 rad24 checkpoint pro 98.2 7.2E-06 1.6E-10 80.6 10.3 48 60-107 82-134 (637)
127 COG2812 DnaX DNA polymerase II 98.2 1E-05 2.3E-10 77.0 10.4 188 62-261 16-215 (515)
128 PRK06871 DNA polymerase III su 98.2 0.00014 3E-09 66.0 16.9 174 70-261 10-198 (325)
129 CHL00176 ftsH cell division pr 98.2 5.4E-05 1.2E-09 75.0 15.4 178 62-266 183-395 (638)
130 KOG2228 Origin recognition com 98.2 2.4E-05 5.2E-10 69.3 11.2 168 62-235 24-220 (408)
131 COG0466 Lon ATP-dependent Lon 98.2 3.9E-05 8.4E-10 74.5 13.5 159 61-234 322-508 (782)
132 smart00382 AAA ATPases associa 98.1 1.1E-05 2.4E-10 63.9 8.2 90 83-179 2-92 (148)
133 PRK06090 DNA polymerase III su 98.1 0.00017 3.6E-09 65.4 16.5 176 69-266 10-201 (319)
134 PF13177 DNA_pol3_delta2: DNA 98.1 3E-05 6.5E-10 63.4 10.7 137 66-222 1-162 (162)
135 PRK08116 hypothetical protein; 98.1 8.3E-06 1.8E-10 72.4 7.8 103 83-203 114-220 (268)
136 PRK10536 hypothetical protein; 98.1 7.7E-05 1.7E-09 64.8 13.3 135 62-204 55-213 (262)
137 PF07693 KAP_NTPase: KAP famil 98.1 0.00017 3.6E-09 66.3 16.4 72 68-139 2-80 (325)
138 PRK07993 DNA polymerase III su 98.1 0.00017 3.8E-09 66.0 15.7 176 69-262 9-200 (334)
139 PF00004 AAA: ATPase family as 98.1 7.5E-06 1.6E-10 64.4 6.0 22 86-107 1-22 (132)
140 KOG0743 AAA+-type ATPase [Post 98.1 0.0014 3E-08 60.8 21.2 170 83-289 235-434 (457)
141 KOG0744 AAA+-type ATPase [Post 98.0 5.9E-05 1.3E-09 66.5 11.1 84 82-177 176-262 (423)
142 PRK08181 transposase; Validate 98.0 1.4E-05 3E-10 70.7 7.2 105 76-204 101-209 (269)
143 PRK12377 putative replication 98.0 1.9E-05 4.1E-10 69.0 7.9 74 82-175 100-173 (248)
144 TIGR01243 CDC48 AAA family ATP 98.0 7.4E-05 1.6E-09 76.2 13.4 171 63-260 179-381 (733)
145 KOG2004 Mitochondrial ATP-depe 98.0 9.8E-05 2.1E-09 71.6 13.1 157 62-234 411-596 (906)
146 PRK12608 transcription termina 98.0 8.7E-05 1.9E-09 67.9 12.1 105 70-176 119-231 (380)
147 KOG0741 AAA+-type ATPase [Post 98.0 0.00046 1E-08 64.9 15.7 145 82-256 537-704 (744)
148 PRK06964 DNA polymerase III su 98.0 0.00052 1.1E-08 62.8 16.1 89 164-264 131-223 (342)
149 KOG0734 AAA+-type ATPase conta 97.9 0.00012 2.6E-09 68.7 11.8 45 63-107 305-361 (752)
150 TIGR00763 lon ATP-dependent pr 97.9 0.00012 2.6E-09 75.0 13.0 158 62-234 320-505 (775)
151 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00011 2.4E-09 70.5 11.9 172 62-260 228-429 (489)
152 TIGR01243 CDC48 AAA family ATP 97.9 0.00031 6.7E-09 71.7 15.7 177 62-266 453-664 (733)
153 PRK04296 thymidine kinase; Pro 97.9 1.4E-05 3E-10 67.3 4.7 114 84-206 3-118 (190)
154 PF04665 Pox_A32: Poxvirus A32 97.9 4.2E-05 9E-10 66.0 7.7 36 84-122 14-49 (241)
155 PRK06921 hypothetical protein; 97.9 3.3E-05 7.2E-10 68.4 7.3 39 82-122 116-154 (266)
156 PRK08118 topology modulation p 97.9 3.4E-05 7.4E-10 63.4 6.9 36 84-119 2-37 (167)
157 PF00448 SRP54: SRP54-type pro 97.8 7.2E-05 1.6E-09 63.1 8.1 90 83-175 1-93 (196)
158 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00087 1.9E-08 59.5 15.2 56 69-132 9-64 (262)
159 KOG0730 AAA+-type ATPase [Post 97.8 0.00063 1.4E-08 65.6 14.9 153 81-260 466-637 (693)
160 PRK07261 topology modulation p 97.8 7E-05 1.5E-09 61.9 7.4 66 85-175 2-67 (171)
161 PRK10787 DNA-binding ATP-depen 97.8 0.00015 3.3E-09 73.8 10.9 160 61-235 321-507 (784)
162 PRK06526 transposase; Provisio 97.8 2.6E-05 5.6E-10 68.6 4.7 26 82-107 97-122 (254)
163 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00031 6.8E-09 72.7 13.3 61 61-124 564-633 (852)
164 PRK04132 replication factor C 97.8 0.00041 8.8E-09 70.4 13.7 157 88-266 569-731 (846)
165 PRK06835 DNA replication prote 97.8 8.5E-05 1.9E-09 67.7 8.0 103 82-203 182-288 (329)
166 PRK09361 radB DNA repair and r 97.8 0.00015 3.2E-09 62.9 9.2 88 82-175 22-117 (225)
167 PHA00729 NTP-binding motif con 97.8 0.00019 4E-09 61.3 9.2 35 73-107 7-41 (226)
168 PRK07952 DNA replication prote 97.8 0.0001 2.2E-09 64.3 7.7 88 70-176 84-173 (244)
169 PRK08699 DNA polymerase III su 97.8 0.00057 1.2E-08 62.4 13.0 68 165-233 113-184 (325)
170 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00052 1.1E-08 65.6 12.9 153 82-260 544-718 (802)
171 KOG0731 AAA+-type ATPase conta 97.8 0.00083 1.8E-08 66.6 14.7 174 62-262 311-520 (774)
172 COG1484 DnaC DNA replication p 97.7 0.00022 4.8E-09 62.7 9.8 89 67-175 88-177 (254)
173 KOG0735 AAA+-type ATPase [Post 97.7 0.00071 1.5E-08 65.8 13.5 151 84-262 702-872 (952)
174 cd01120 RecA-like_NTPases RecA 97.7 5.2E-05 1.1E-09 61.8 5.2 39 85-126 1-39 (165)
175 PF14532 Sigma54_activ_2: Sigm 97.7 2.9E-05 6.3E-10 61.8 3.5 43 65-107 1-45 (138)
176 TIGR02639 ClpA ATP-dependent C 97.7 0.00063 1.4E-08 69.3 13.8 47 61-107 453-508 (731)
177 PF10236 DAP3: Mitochondrial r 97.7 0.0025 5.4E-08 57.9 16.2 49 215-263 258-306 (309)
178 PRK10865 protein disaggregatio 97.7 0.00061 1.3E-08 70.4 13.5 46 62-107 568-622 (857)
179 PF03215 Rad17: Rad17 cell cyc 97.7 0.00027 5.9E-09 68.3 10.2 55 62-121 19-78 (519)
180 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00018 3.9E-09 74.0 9.5 47 61-107 565-620 (852)
181 TIGR02237 recomb_radB DNA repa 97.7 0.00018 3.8E-09 61.7 8.0 89 82-175 11-107 (209)
182 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.0002 4.4E-09 62.5 8.6 92 82-175 18-125 (235)
183 smart00763 AAA_PrkA PrkA AAA d 97.7 6.1E-05 1.3E-09 68.6 5.3 46 63-108 52-103 (361)
184 COG0470 HolB ATPase involved i 97.7 0.00037 7.9E-09 64.0 10.5 141 63-222 2-169 (325)
185 TIGR02012 tigrfam_recA protein 97.7 0.00015 3.2E-09 65.6 7.4 86 82-175 54-143 (321)
186 COG1223 Predicted ATPase (AAA+ 97.6 0.0014 3.1E-08 56.3 12.7 171 62-260 121-319 (368)
187 KOG0735 AAA+-type ATPase [Post 97.6 0.00027 5.9E-09 68.6 9.3 161 82-267 430-617 (952)
188 TIGR02902 spore_lonB ATP-depen 97.6 0.00028 6E-09 69.0 9.5 46 62-107 65-110 (531)
189 cd00983 recA RecA is a bacter 97.6 0.00015 3.3E-09 65.5 7.1 86 82-175 54-143 (325)
190 cd01393 recA_like RecA is a b 97.6 0.00069 1.5E-08 58.7 11.0 93 82-175 18-124 (226)
191 PF02562 PhoH: PhoH-like prote 97.6 0.00011 2.4E-09 62.0 5.7 128 66-203 4-155 (205)
192 PRK09183 transposase/IS protei 97.6 5E-05 1.1E-09 67.1 3.7 26 82-107 101-126 (259)
193 PF01695 IstB_IS21: IstB-like 97.6 0.00017 3.8E-09 59.8 6.5 74 81-175 45-118 (178)
194 PRK09354 recA recombinase A; P 97.6 0.00021 4.6E-09 65.1 7.5 86 82-175 59-148 (349)
195 cd01394 radB RadB. The archaea 97.6 0.00071 1.5E-08 58.3 10.4 41 82-125 18-58 (218)
196 PF13207 AAA_17: AAA domain; P 97.6 6.3E-05 1.4E-09 58.3 3.3 23 85-107 1-23 (121)
197 PTZ00494 tuzin-like protein; P 97.6 0.016 3.4E-07 54.2 18.8 198 20-234 335-544 (664)
198 PRK08939 primosomal protein Dn 97.5 0.0005 1.1E-08 62.2 9.0 116 66-202 135-259 (306)
199 COG0542 clpA ATP-binding subun 97.5 0.00052 1.1E-08 68.5 9.7 155 62-233 170-345 (786)
200 KOG1969 DNA replication checkp 97.5 0.00033 7.2E-09 68.3 8.1 73 82-177 325-399 (877)
201 PLN00020 ribulose bisphosphate 97.5 0.0002 4.3E-09 65.1 6.1 26 82-107 147-172 (413)
202 CHL00095 clpC Clp protease ATP 97.5 0.00056 1.2E-08 70.6 10.2 47 61-107 508-563 (821)
203 COG0542 clpA ATP-binding subun 97.5 0.00022 4.7E-09 71.1 6.8 105 61-177 490-605 (786)
204 KOG0736 Peroxisome assembly fa 97.5 0.011 2.3E-07 58.5 17.8 92 62-177 672-776 (953)
205 PRK06696 uridine kinase; Valid 97.5 0.00018 4E-09 62.2 5.2 42 66-107 2-46 (223)
206 KOG2035 Replication factor C, 97.5 0.0036 7.7E-08 54.4 12.7 211 63-291 14-263 (351)
207 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0004 8.7E-09 56.1 6.6 117 84-205 3-139 (159)
208 PF08423 Rad51: Rad51; InterP 97.4 0.00074 1.6E-08 59.6 8.8 57 82-139 37-96 (256)
209 PRK10733 hflB ATP-dependent me 97.4 0.0055 1.2E-07 61.5 15.4 150 83-259 185-356 (644)
210 COG1066 Sms Predicted ATP-depe 97.4 0.0012 2.6E-08 60.5 9.6 86 82-177 92-180 (456)
211 TIGR02238 recomb_DMC1 meiotic 97.4 0.0013 2.8E-08 59.8 9.9 93 82-175 95-201 (313)
212 COG0465 HflB ATP-dependent Zn 97.4 0.0024 5.1E-08 62.1 12.0 173 62-261 150-356 (596)
213 PRK11034 clpA ATP-dependent Cl 97.4 0.00074 1.6E-08 68.4 8.9 47 61-107 457-512 (758)
214 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0013 2.9E-08 57.4 9.5 89 82-176 20-137 (237)
215 COG2607 Predicted ATPase (AAA+ 97.4 0.0012 2.5E-08 56.2 8.4 46 62-107 60-109 (287)
216 PRK00771 signal recognition pa 97.3 0.0025 5.3E-08 60.4 11.5 90 82-175 94-185 (437)
217 cd03115 SRP The signal recogni 97.3 0.001 2.3E-08 55.0 8.0 89 85-176 2-93 (173)
218 PRK07132 DNA polymerase III su 97.3 0.014 3.1E-07 52.5 15.6 167 71-265 5-184 (299)
219 PF13604 AAA_30: AAA domain; P 97.3 0.00018 3.8E-09 60.9 3.2 32 76-107 11-42 (196)
220 PRK06067 flagellar accessory p 97.3 0.0015 3.3E-08 57.0 9.2 88 82-175 24-130 (234)
221 cd01131 PilT Pilus retraction 97.3 0.00039 8.5E-09 58.9 5.2 110 84-206 2-111 (198)
222 COG2884 FtsE Predicted ATPase 97.3 0.0021 4.5E-08 52.8 8.9 125 81-210 26-203 (223)
223 PRK05541 adenylylsulfate kinas 97.3 0.00061 1.3E-08 56.6 6.3 36 82-120 6-41 (176)
224 cd01121 Sms Sms (bacterial rad 97.3 0.0014 3.1E-08 60.9 9.2 86 82-176 81-169 (372)
225 TIGR00708 cobA cob(I)alamin ad 97.3 0.0016 3.5E-08 53.3 8.3 118 83-204 5-140 (173)
226 KOG0737 AAA+-type ATPase [Post 97.3 0.0069 1.5E-07 54.8 12.7 49 63-114 93-155 (386)
227 PLN03187 meiotic recombination 97.3 0.0017 3.6E-08 59.5 9.1 93 82-175 125-231 (344)
228 PF13481 AAA_25: AAA domain; P 97.3 0.0014 3.1E-08 55.2 8.2 43 83-125 32-81 (193)
229 PRK15455 PrkA family serine pr 97.3 0.00036 7.8E-09 67.1 4.8 45 63-107 77-127 (644)
230 PF12775 AAA_7: P-loop contain 97.2 0.00046 9.9E-09 61.4 5.3 87 73-175 24-110 (272)
231 PRK13531 regulatory ATPase Rav 97.2 0.0005 1.1E-08 65.2 5.7 44 62-107 20-63 (498)
232 COG1875 NYN ribonuclease and A 97.2 0.00063 1.4E-08 61.2 5.9 135 65-203 227-387 (436)
233 PF00485 PRK: Phosphoribulokin 97.2 0.0026 5.6E-08 53.8 9.4 86 85-170 1-88 (194)
234 PRK05342 clpX ATP-dependent pr 97.2 0.00092 2E-08 63.0 7.0 47 61-107 70-132 (412)
235 KOG0739 AAA+-type ATPase [Post 97.2 0.0062 1.3E-07 53.5 11.3 169 64-260 135-335 (439)
236 COG0464 SpoVK ATPases of the A 97.2 0.0045 9.9E-08 60.3 12.0 152 82-258 275-445 (494)
237 COG0572 Udk Uridine kinase [Nu 97.2 0.0014 3.1E-08 55.4 7.2 26 82-107 7-32 (218)
238 PRK10867 signal recognition pa 97.2 0.0019 4.1E-08 61.0 8.9 39 83-123 100-138 (433)
239 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0027 5.9E-08 57.8 9.6 59 82-141 95-156 (316)
240 COG0563 Adk Adenylate kinase a 97.2 0.00077 1.7E-08 55.9 5.5 23 85-107 2-24 (178)
241 PRK11889 flhF flagellar biosyn 97.2 0.0023 5E-08 59.1 9.0 89 82-175 240-330 (436)
242 PRK10463 hydrogenase nickel in 97.2 0.0024 5.3E-08 56.7 8.9 31 77-107 98-128 (290)
243 COG4133 CcmA ABC-type transpor 97.2 0.0026 5.6E-08 52.1 8.3 36 82-120 27-62 (209)
244 PRK06547 hypothetical protein; 97.2 0.0007 1.5E-08 55.9 5.1 34 74-107 6-39 (172)
245 KOG0727 26S proteasome regulat 97.2 0.0072 1.6E-07 51.8 11.1 27 81-107 187-213 (408)
246 PRK13765 ATP-dependent proteas 97.2 0.00073 1.6E-08 66.9 6.1 76 60-140 29-104 (637)
247 PRK07667 uridine kinase; Provi 97.2 0.0011 2.3E-08 56.0 6.3 36 72-107 4-41 (193)
248 COG0468 RecA RecA/RadA recombi 97.2 0.0031 6.7E-08 55.9 9.4 87 82-175 59-151 (279)
249 PRK14722 flhF flagellar biosyn 97.2 0.0019 4.2E-08 59.7 8.4 89 82-175 136-225 (374)
250 PTZ00035 Rad51 protein; Provis 97.1 0.0053 1.1E-07 56.4 11.2 93 82-175 117-223 (337)
251 KOG0652 26S proteasome regulat 97.1 0.025 5.3E-07 48.9 14.1 45 63-107 172-229 (424)
252 PRK11823 DNA repair protein Ra 97.1 0.0024 5.1E-08 61.1 8.9 86 82-176 79-167 (446)
253 PRK09270 nucleoside triphospha 97.1 0.0051 1.1E-07 53.4 10.3 27 81-107 31-57 (229)
254 PF07728 AAA_5: AAA domain (dy 97.1 0.0013 2.9E-08 52.1 6.1 41 86-132 2-42 (139)
255 TIGR00959 ffh signal recogniti 97.1 0.0028 6.2E-08 59.9 9.1 25 83-107 99-123 (428)
256 KOG0728 26S proteasome regulat 97.1 0.0098 2.1E-07 50.9 11.3 151 64-238 148-335 (404)
257 TIGR02236 recomb_radA DNA repa 97.1 0.0031 6.7E-08 57.5 9.1 58 82-140 94-154 (310)
258 TIGR00064 ftsY signal recognit 97.1 0.0042 9.2E-08 55.3 9.7 92 82-176 71-165 (272)
259 PF13238 AAA_18: AAA domain; P 97.1 0.00046 1E-08 53.8 3.2 22 86-107 1-22 (129)
260 COG1618 Predicted nucleotide k 97.1 0.00063 1.4E-08 54.1 3.8 26 83-108 5-30 (179)
261 PF00154 RecA: recA bacterial 97.1 0.0023 5E-08 57.8 7.9 88 82-177 52-143 (322)
262 TIGR03499 FlhF flagellar biosy 97.1 0.0032 6.9E-08 56.5 8.8 88 82-174 193-281 (282)
263 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0025 5.4E-08 56.4 8.0 40 82-124 35-74 (259)
264 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0018 3.9E-08 57.4 7.1 96 72-181 70-165 (264)
265 KOG1970 Checkpoint RAD17-RFC c 97.1 0.0023 5E-08 60.7 7.9 50 67-121 87-143 (634)
266 PRK04301 radA DNA repair and r 97.0 0.0044 9.6E-08 56.7 9.8 58 82-140 101-161 (317)
267 PRK04328 hypothetical protein; 97.0 0.0024 5.2E-08 56.2 7.7 40 82-124 22-61 (249)
268 PRK05973 replicative DNA helic 97.0 0.0049 1.1E-07 53.4 9.4 86 82-175 63-157 (237)
269 PF13671 AAA_33: AAA domain; P 97.0 0.00057 1.2E-08 54.5 3.5 23 85-107 1-23 (143)
270 PRK05986 cob(I)alamin adenolsy 97.0 0.0017 3.7E-08 53.9 6.3 118 82-204 21-158 (191)
271 PF07724 AAA_2: AAA domain (Cd 97.0 0.0012 2.6E-08 54.4 5.4 42 83-127 3-45 (171)
272 KOG0738 AAA+-type ATPase [Post 97.0 0.0081 1.7E-07 54.7 10.8 25 83-107 245-269 (491)
273 PRK05917 DNA polymerase III su 97.0 0.021 4.7E-07 50.9 13.4 38 70-107 5-43 (290)
274 TIGR00390 hslU ATP-dependent p 97.0 0.0016 3.5E-08 60.6 6.5 47 61-107 11-71 (441)
275 KOG3347 Predicted nucleotide k 97.0 0.001 2.2E-08 52.2 4.3 70 83-165 7-76 (176)
276 COG1102 Cmk Cytidylate kinase 97.0 0.0013 2.7E-08 52.5 4.9 44 85-142 2-45 (179)
277 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0063 1.4E-07 52.8 9.9 40 82-124 19-58 (229)
278 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0033 7.2E-08 55.5 8.0 94 82-177 68-175 (274)
279 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.0011 2.3E-08 55.5 4.7 23 85-107 1-23 (183)
280 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0016 3.4E-08 51.0 5.3 39 69-107 6-46 (133)
281 TIGR00764 lon_rel lon-related 97.0 0.0028 6.1E-08 62.9 8.3 76 60-140 16-91 (608)
282 COG3910 Predicted ATPase [Gene 97.0 0.0036 7.8E-08 51.3 7.4 136 81-219 35-202 (233)
283 PRK08233 hypothetical protein; 97.0 0.00072 1.6E-08 56.4 3.7 25 83-107 3-27 (182)
284 COG1136 SalX ABC-type antimicr 97.0 0.0056 1.2E-07 52.3 8.9 25 82-106 30-54 (226)
285 PRK14974 cell division protein 97.0 0.0079 1.7E-07 55.0 10.6 93 82-177 139-234 (336)
286 PF01583 APS_kinase: Adenylyls 97.0 0.00097 2.1E-08 53.6 4.0 36 83-121 2-37 (156)
287 TIGR01425 SRP54_euk signal rec 97.0 0.0038 8.2E-08 58.8 8.5 25 83-107 100-124 (429)
288 PRK14527 adenylate kinase; Pro 97.0 0.0015 3.2E-08 55.1 5.4 26 82-107 5-30 (191)
289 COG1419 FlhF Flagellar GTP-bin 97.0 0.0081 1.7E-07 55.5 10.4 89 82-175 202-291 (407)
290 cd03238 ABC_UvrA The excision 96.9 0.004 8.7E-08 51.5 7.8 116 82-207 20-152 (176)
291 TIGR00382 clpX endopeptidase C 96.9 0.0035 7.5E-08 58.9 8.1 47 61-107 76-140 (413)
292 PF00910 RNA_helicase: RNA hel 96.9 0.00056 1.2E-08 51.7 2.4 22 86-107 1-22 (107)
293 TIGR02655 circ_KaiC circadian 96.9 0.0055 1.2E-07 59.4 9.8 88 82-175 262-363 (484)
294 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.00091 2E-08 61.9 4.2 105 82-203 61-167 (362)
295 TIGR00554 panK_bact pantothena 96.9 0.0071 1.5E-07 54.1 9.7 82 81-165 60-141 (290)
296 PF06745 KaiC: KaiC; InterPro 96.9 0.0018 4E-08 56.1 5.9 89 82-175 18-125 (226)
297 PRK08533 flagellar accessory p 96.9 0.007 1.5E-07 52.6 9.4 49 82-135 23-71 (230)
298 PF08433 KTI12: Chromatin asso 96.9 0.0026 5.6E-08 56.5 6.8 25 84-108 2-26 (270)
299 TIGR00416 sms DNA repair prote 96.9 0.0044 9.6E-08 59.3 8.8 86 82-176 93-181 (454)
300 PRK09519 recA DNA recombinatio 96.9 0.0033 7.2E-08 63.3 8.2 86 82-175 59-148 (790)
301 cd02019 NK Nucleoside/nucleoti 96.9 0.00078 1.7E-08 46.4 2.8 23 85-107 1-23 (69)
302 PF13245 AAA_19: Part of AAA d 96.9 0.0025 5.5E-08 44.7 5.3 42 82-123 9-51 (76)
303 PLN03186 DNA repair protein RA 96.9 0.01 2.3E-07 54.4 10.7 93 82-175 122-228 (342)
304 PRK06762 hypothetical protein; 96.9 0.00093 2E-08 54.9 3.5 25 83-107 2-26 (166)
305 cd00984 DnaB_C DnaB helicase C 96.9 0.006 1.3E-07 53.4 8.8 51 82-136 12-62 (242)
306 PTZ00301 uridine kinase; Provi 96.9 0.00093 2E-08 57.0 3.5 25 83-107 3-27 (210)
307 TIGR02858 spore_III_AA stage I 96.9 0.013 2.8E-07 52.0 10.8 126 72-206 99-231 (270)
308 PF03308 ArgK: ArgK protein; 96.9 0.0023 4.9E-08 55.5 5.7 56 70-126 14-71 (266)
309 PF05970 PIF1: PIF1-like helic 96.9 0.0023 5E-08 59.7 6.2 38 70-107 9-46 (364)
310 COG0714 MoxR-like ATPases [Gen 96.8 0.0032 6.9E-08 58.0 7.1 64 62-133 24-87 (329)
311 PRK12723 flagellar biosynthesi 96.8 0.0059 1.3E-07 57.0 8.8 90 83-176 174-265 (388)
312 PF00006 ATP-synt_ab: ATP synt 96.8 0.011 2.3E-07 50.6 9.6 95 75-176 6-116 (215)
313 PRK12726 flagellar biosynthesi 96.8 0.0081 1.8E-07 55.4 9.4 90 82-176 205-296 (407)
314 cd03214 ABC_Iron-Siderophores_ 96.8 0.0063 1.4E-07 50.7 8.0 121 82-207 24-161 (180)
315 KOG1051 Chaperone HSP104 and r 96.8 0.012 2.5E-07 60.0 11.1 102 62-177 562-672 (898)
316 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0057 1.2E-07 50.2 7.6 26 82-107 26-51 (166)
317 cd03247 ABCC_cytochrome_bd The 96.8 0.012 2.5E-07 49.0 9.5 26 82-107 27-52 (178)
318 PF02456 Adeno_IVa2: Adenoviru 96.8 0.069 1.5E-06 47.4 14.3 40 84-124 88-127 (369)
319 PRK05201 hslU ATP-dependent pr 96.8 0.0043 9.2E-08 57.9 7.4 47 61-107 14-74 (443)
320 cd02025 PanK Pantothenate kina 96.8 0.0079 1.7E-07 51.8 8.7 40 85-125 1-40 (220)
321 PRK05480 uridine/cytidine kina 96.8 0.0013 2.8E-08 56.3 3.8 27 81-107 4-30 (209)
322 PRK12727 flagellar biosynthesi 96.8 0.0059 1.3E-07 58.7 8.5 89 82-175 349-438 (559)
323 PRK06217 hypothetical protein; 96.8 0.0028 6.1E-08 53.0 5.8 23 85-107 3-25 (183)
324 PF00158 Sigma54_activat: Sigm 96.8 0.0025 5.5E-08 52.3 5.3 44 64-107 1-46 (168)
325 COG4608 AppF ABC-type oligopep 96.8 0.011 2.4E-07 51.6 9.4 125 82-210 38-176 (268)
326 KOG2170 ATPase of the AAA+ sup 96.8 0.0036 7.8E-08 55.0 6.3 99 64-177 84-190 (344)
327 cd03228 ABCC_MRP_Like The MRP 96.8 0.0058 1.3E-07 50.4 7.4 26 82-107 27-52 (171)
328 PF07726 AAA_3: ATPase family 96.8 0.00087 1.9E-08 51.6 2.2 28 86-116 2-29 (131)
329 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.014 3.1E-07 63.4 11.7 26 82-107 1629-1654(2281)
330 PRK12678 transcription termina 96.7 0.0018 4E-08 62.2 4.7 101 74-176 406-514 (672)
331 PRK12724 flagellar biosynthesi 96.7 0.0065 1.4E-07 56.8 8.2 57 83-141 223-280 (432)
332 PF00625 Guanylate_kin: Guanyl 96.7 0.0023 4.9E-08 53.5 4.8 36 83-121 2-37 (183)
333 cd03216 ABC_Carb_Monos_I This 96.7 0.003 6.4E-08 51.8 5.3 114 82-206 25-144 (163)
334 PRK15429 formate hydrogenlyase 96.7 0.0047 1E-07 62.7 7.9 46 62-107 376-423 (686)
335 COG5635 Predicted NTPase (NACH 96.7 0.0022 4.8E-08 66.2 5.6 198 83-288 222-449 (824)
336 COG1643 HrpA HrpA-like helicas 96.7 0.011 2.4E-07 60.1 10.3 130 68-203 52-204 (845)
337 cd03246 ABCC_Protease_Secretio 96.7 0.0047 1E-07 51.1 6.6 26 82-107 27-52 (173)
338 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0027 5.9E-08 57.6 5.4 46 62-107 61-112 (358)
339 PF06309 Torsin: Torsin; Inte 96.7 0.0092 2E-07 45.9 7.5 45 63-107 26-77 (127)
340 PF13086 AAA_11: AAA domain; P 96.7 0.0039 8.5E-08 54.0 6.4 65 71-137 7-75 (236)
341 cd01122 GP4d_helicase GP4d_hel 96.7 0.017 3.8E-07 51.5 10.7 53 82-138 29-81 (271)
342 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0014 3.1E-08 54.9 3.5 26 82-107 2-27 (188)
343 cd01125 repA Hexameric Replica 96.7 0.012 2.7E-07 51.4 9.5 23 85-107 3-25 (239)
344 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0053 1.1E-07 50.8 6.8 120 82-208 25-159 (173)
345 cd02027 APSK Adenosine 5'-phos 96.7 0.0049 1.1E-07 49.6 6.4 23 85-107 1-23 (149)
346 TIGR01420 pilT_fam pilus retra 96.7 0.0022 4.8E-08 59.2 4.9 111 81-204 120-230 (343)
347 PRK05439 pantothenate kinase; 96.7 0.016 3.5E-07 52.3 10.2 83 81-166 84-166 (311)
348 PRK00131 aroK shikimate kinase 96.7 0.0016 3.5E-08 53.7 3.5 26 82-107 3-28 (175)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0073 1.6E-07 48.3 7.1 26 82-107 25-50 (144)
350 cd00227 CPT Chloramphenicol (C 96.7 0.0016 3.5E-08 54.0 3.4 25 83-107 2-26 (175)
351 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0049 1.1E-07 51.1 6.2 27 81-107 23-49 (177)
352 TIGR00235 udk uridine kinase. 96.7 0.0017 3.7E-08 55.4 3.7 26 82-107 5-30 (207)
353 PRK05800 cobU adenosylcobinami 96.7 0.0088 1.9E-07 49.2 7.7 84 84-175 2-86 (170)
354 TIGR01650 PD_CobS cobaltochela 96.7 0.0052 1.1E-07 55.6 6.7 45 61-107 44-88 (327)
355 PRK07276 DNA polymerase III su 96.7 0.085 1.8E-06 47.3 14.4 67 164-232 103-173 (290)
356 PRK03839 putative kinase; Prov 96.7 0.0016 3.4E-08 54.3 3.3 23 85-107 2-24 (180)
357 COG1703 ArgK Putative periplas 96.6 0.0034 7.3E-08 55.3 5.3 55 72-127 38-94 (323)
358 PRK04040 adenylate kinase; Pro 96.6 0.0018 3.9E-08 54.3 3.5 25 83-107 2-26 (188)
359 PF09848 DUF2075: Uncharacteri 96.6 0.0097 2.1E-07 55.3 8.7 40 84-124 2-41 (352)
360 KOG3928 Mitochondrial ribosome 96.6 0.15 3.3E-06 47.1 15.8 59 212-270 402-460 (461)
361 PRK05703 flhF flagellar biosyn 96.6 0.011 2.3E-07 56.2 9.0 88 83-175 221-309 (424)
362 cd00544 CobU Adenosylcobinamid 96.6 0.017 3.6E-07 47.5 9.1 81 85-175 1-83 (169)
363 COG0467 RAD55 RecA-superfamily 96.6 0.0052 1.1E-07 54.5 6.6 49 82-135 22-70 (260)
364 PTZ00088 adenylate kinase 1; P 96.6 0.0021 4.6E-08 55.6 3.9 23 85-107 8-30 (229)
365 COG0529 CysC Adenylylsulfate k 96.6 0.0064 1.4E-07 49.3 6.2 30 78-107 18-47 (197)
366 cd01124 KaiC KaiC is a circadi 96.6 0.0042 9.1E-08 52.0 5.6 45 85-134 1-45 (187)
367 PHA02244 ATPase-like protein 96.6 0.0046 9.9E-08 56.7 6.1 45 61-107 95-143 (383)
368 cd03229 ABC_Class3 This class 96.6 0.0056 1.2E-07 50.9 6.2 26 82-107 25-50 (178)
369 PRK10416 signal recognition pa 96.6 0.018 3.9E-07 52.4 9.9 92 82-176 113-207 (318)
370 COG1428 Deoxynucleoside kinase 96.6 0.0049 1.1E-07 51.5 5.4 25 83-107 4-28 (216)
371 PF03266 NTPase_1: NTPase; In 96.6 0.0019 4E-08 53.1 2.9 22 86-107 2-23 (168)
372 cd02021 GntK Gluconate kinase 96.6 0.0018 3.8E-08 52.2 2.8 23 85-107 1-23 (150)
373 PRK15453 phosphoribulokinase; 96.5 0.016 3.4E-07 51.2 8.8 80 82-164 4-89 (290)
374 cd00046 DEXDc DEAD-like helica 96.5 0.0083 1.8E-07 46.9 6.6 37 85-122 2-38 (144)
375 TIGR01069 mutS2 MutS2 family p 96.5 0.0012 2.7E-08 67.1 2.1 118 164-289 401-523 (771)
376 TIGR03575 selen_PSTK_euk L-ser 96.5 0.01 2.2E-07 54.3 7.7 22 86-107 2-23 (340)
377 PRK10875 recD exonuclease V su 96.5 0.013 2.8E-07 58.1 9.0 55 82-136 166-220 (615)
378 PF13479 AAA_24: AAA domain 96.5 0.012 2.7E-07 50.4 7.8 20 84-103 4-23 (213)
379 TIGR02322 phosphon_PhnN phosph 96.5 0.0025 5.3E-08 53.1 3.4 24 84-107 2-25 (179)
380 PF03205 MobB: Molybdopterin g 96.5 0.0042 9E-08 49.4 4.5 39 84-124 1-39 (140)
381 PF02374 ArsA_ATPase: Anion-tr 96.5 0.0033 7.2E-08 56.9 4.4 47 84-133 2-48 (305)
382 TIGR01351 adk adenylate kinase 96.5 0.0044 9.5E-08 53.1 4.9 22 86-107 2-23 (210)
383 KOG0729 26S proteasome regulat 96.5 0.014 3.1E-07 50.5 7.8 45 63-107 178-235 (435)
384 PF03193 DUF258: Protein of un 96.5 0.0048 1E-07 49.9 4.8 36 69-107 24-59 (161)
385 PRK14737 gmk guanylate kinase; 96.5 0.0031 6.8E-08 52.7 3.9 26 82-107 3-28 (186)
386 PRK00625 shikimate kinase; Pro 96.5 0.0028 6.1E-08 52.3 3.5 23 85-107 2-24 (173)
387 COG3598 RepA RecA-family ATPas 96.5 0.017 3.6E-07 51.4 8.3 91 85-175 91-204 (402)
388 TIGR02868 CydC thiol reductant 96.5 0.014 3E-07 57.6 9.0 27 81-107 359-385 (529)
389 PRK14721 flhF flagellar biosyn 96.5 0.021 4.6E-07 53.8 9.7 88 82-174 190-278 (420)
390 KOG0924 mRNA splicing factor A 96.5 0.012 2.6E-07 57.3 8.0 123 72-204 362-510 (1042)
391 cd02028 UMPK_like Uridine mono 96.4 0.0028 6E-08 52.8 3.4 23 85-107 1-23 (179)
392 PRK06002 fliI flagellum-specif 96.4 0.012 2.7E-07 55.5 8.0 89 82-176 164-265 (450)
393 cd00071 GMPK Guanosine monopho 96.4 0.0027 5.9E-08 50.3 3.2 23 85-107 1-23 (137)
394 PRK14528 adenylate kinase; Pro 96.4 0.0058 1.2E-07 51.2 5.3 24 84-107 2-25 (186)
395 PRK00279 adk adenylate kinase; 96.4 0.005 1.1E-07 52.9 5.0 23 85-107 2-24 (215)
396 PRK12597 F0F1 ATP synthase sub 96.4 0.01 2.3E-07 56.4 7.4 93 82-176 142-248 (461)
397 PLN02165 adenylate isopentenyl 96.4 0.0038 8.3E-08 56.5 4.3 29 79-107 39-67 (334)
398 COG2401 ABC-type ATPase fused 96.4 0.0029 6.2E-08 58.1 3.4 134 83-216 409-580 (593)
399 PRK00889 adenylylsulfate kinas 96.4 0.0044 9.6E-08 51.3 4.4 26 82-107 3-28 (175)
400 PF03029 ATP_bind_1: Conserved 96.4 0.0042 9.1E-08 54.1 4.4 35 88-125 1-35 (238)
401 cd02024 NRK1 Nicotinamide ribo 96.4 0.0025 5.3E-08 53.2 2.8 23 85-107 1-23 (187)
402 PF02367 UPF0079: Uncharacteri 96.4 0.0072 1.6E-07 46.5 5.0 27 81-107 13-39 (123)
403 COG3640 CooC CO dehydrogenase 96.4 0.0071 1.5E-07 51.4 5.3 42 85-128 2-43 (255)
404 COG0003 ArsA Predicted ATPase 96.4 0.0064 1.4E-07 55.1 5.4 49 83-134 2-50 (322)
405 PRK06995 flhF flagellar biosyn 96.4 0.02 4.3E-07 54.9 8.9 88 83-175 256-344 (484)
406 PRK13407 bchI magnesium chelat 96.3 0.0046 1E-07 56.5 4.5 46 62-107 8-53 (334)
407 COG0194 Gmk Guanylate kinase [ 96.3 0.0039 8.4E-08 51.1 3.6 25 83-107 4-28 (191)
408 cd02023 UMPK Uridine monophosp 96.3 0.0027 5.8E-08 53.8 2.8 23 85-107 1-23 (198)
409 PRK12339 2-phosphoglycerate ki 96.3 0.0038 8.2E-08 52.7 3.7 25 83-107 3-27 (197)
410 cd01130 VirB11-like_ATPase Typ 96.3 0.0048 1.1E-07 51.7 4.3 36 71-107 14-49 (186)
411 KOG0736 Peroxisome assembly fa 96.3 0.046 1E-06 54.2 11.3 43 65-107 404-455 (953)
412 PRK08972 fliI flagellum-specif 96.3 0.015 3.2E-07 54.8 7.8 91 82-177 161-264 (444)
413 cd01135 V_A-ATPase_B V/A-type 96.3 0.014 3E-07 51.5 7.2 96 82-177 68-178 (276)
414 PRK13947 shikimate kinase; Pro 96.3 0.0034 7.3E-08 51.8 3.2 23 85-107 3-25 (171)
415 TIGR03263 guanyl_kin guanylate 96.3 0.0032 6.9E-08 52.4 3.1 24 84-107 2-25 (180)
416 TIGR01313 therm_gnt_kin carboh 96.3 0.0027 5.8E-08 51.9 2.6 22 86-107 1-22 (163)
417 cd02020 CMPK Cytidine monophos 96.3 0.003 6.5E-08 50.5 2.8 23 85-107 1-23 (147)
418 COG1936 Predicted nucleotide k 96.3 0.0031 6.7E-08 51.0 2.7 20 85-104 2-21 (180)
419 cd02029 PRK_like Phosphoribulo 96.3 0.013 2.8E-07 51.3 6.8 79 85-166 1-85 (277)
420 PF08477 Miro: Miro-like prote 96.3 0.0037 8.1E-08 47.9 3.1 22 86-107 2-23 (119)
421 COG2842 Uncharacterized ATPase 96.3 0.036 7.8E-07 48.9 9.4 106 60-177 70-177 (297)
422 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.0036 7.8E-08 53.7 3.3 23 83-105 29-51 (213)
423 PRK09280 F0F1 ATP synthase sub 96.3 0.015 3.4E-07 55.1 7.7 93 82-176 143-249 (463)
424 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.011 2.4E-07 48.0 6.0 117 82-208 24-144 (157)
425 COG4240 Predicted kinase [Gene 96.3 0.03 6.5E-07 47.4 8.4 85 81-167 48-135 (300)
426 PRK00300 gmk guanylate kinase; 96.2 0.0043 9.2E-08 52.9 3.6 26 82-107 4-29 (205)
427 PRK09302 circadian clock prote 96.2 0.032 6.9E-07 54.7 10.1 88 82-175 272-373 (509)
428 TIGR02030 BchI-ChlI magnesium 96.2 0.0073 1.6E-07 55.4 5.1 46 62-107 4-49 (337)
429 PRK08927 fliI flagellum-specif 96.2 0.023 5.1E-07 53.6 8.6 90 82-176 157-259 (442)
430 PRK13949 shikimate kinase; Pro 96.2 0.0043 9.2E-08 51.1 3.3 24 84-107 2-25 (169)
431 PF06068 TIP49: TIP49 C-termin 96.2 0.011 2.4E-07 53.9 6.2 47 61-107 23-74 (398)
432 PRK14530 adenylate kinase; Pro 96.2 0.004 8.6E-08 53.5 3.2 24 84-107 4-27 (215)
433 PRK05922 type III secretion sy 96.2 0.017 3.8E-07 54.4 7.6 92 81-177 155-259 (434)
434 PRK03846 adenylylsulfate kinas 96.2 0.0071 1.5E-07 51.2 4.7 27 81-107 22-48 (198)
435 PRK14529 adenylate kinase; Pro 96.2 0.023 4.9E-07 48.9 7.7 83 85-176 2-87 (223)
436 PRK09099 type III secretion sy 96.2 0.021 4.5E-07 54.2 8.1 93 81-177 161-265 (441)
437 PRK08149 ATP synthase SpaL; Va 96.2 0.026 5.6E-07 53.3 8.7 90 82-177 150-253 (428)
438 PRK14723 flhF flagellar biosyn 96.2 0.04 8.7E-07 55.6 10.4 58 83-141 185-243 (767)
439 KOG0726 26S proteasome regulat 96.2 0.088 1.9E-06 46.3 11.1 45 63-107 186-243 (440)
440 TIGR00041 DTMP_kinase thymidyl 96.2 0.013 2.8E-07 49.5 6.1 25 83-107 3-27 (195)
441 COG1124 DppF ABC-type dipeptid 96.2 0.0071 1.5E-07 51.7 4.4 26 82-107 32-57 (252)
442 COG1224 TIP49 DNA helicase TIP 96.2 0.013 2.9E-07 52.8 6.2 49 59-107 36-89 (450)
443 COG0488 Uup ATPase components 96.2 0.021 4.5E-07 55.6 8.1 134 82-219 347-510 (530)
444 PRK10751 molybdopterin-guanine 96.2 0.0054 1.2E-07 50.4 3.5 26 82-107 5-30 (173)
445 CHL00081 chlI Mg-protoporyphyr 96.2 0.0077 1.7E-07 55.3 4.9 46 62-107 17-62 (350)
446 PRK14738 gmk guanylate kinase; 96.2 0.0052 1.1E-07 52.4 3.6 26 81-106 11-36 (206)
447 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.008 1.7E-07 55.7 5.0 101 74-181 126-228 (358)
448 cd00464 SK Shikimate kinase (S 96.1 0.0045 9.7E-08 50.0 3.0 22 86-107 2-23 (154)
449 PRK05537 bifunctional sulfate 96.1 0.0088 1.9E-07 58.9 5.6 47 61-107 368-416 (568)
450 cd01672 TMPK Thymidine monopho 96.1 0.012 2.7E-07 49.5 5.9 23 85-107 2-24 (200)
451 smart00072 GuKc Guanylate kina 96.1 0.0064 1.4E-07 50.9 4.0 25 83-107 2-26 (184)
452 TIGR00073 hypB hydrogenase acc 96.1 0.0071 1.5E-07 51.6 4.3 30 78-107 17-46 (207)
453 cd01136 ATPase_flagellum-secre 96.1 0.034 7.5E-07 50.6 8.9 90 82-176 68-170 (326)
454 TIGR01039 atpD ATP synthase, F 96.1 0.022 4.7E-07 54.0 7.8 94 82-177 142-249 (461)
455 KOG1532 GTPase XAB1, interacts 96.1 0.0062 1.4E-07 52.8 3.8 26 82-107 18-43 (366)
456 PF06414 Zeta_toxin: Zeta toxi 96.1 0.0048 1E-07 52.3 3.2 90 81-175 13-102 (199)
457 PRK11608 pspF phage shock prot 96.1 0.01 2.3E-07 54.4 5.5 46 62-107 6-53 (326)
458 PLN02200 adenylate kinase fami 96.1 0.0059 1.3E-07 53.1 3.7 26 82-107 42-67 (234)
459 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0068 1.5E-07 45.4 3.4 23 82-104 14-36 (107)
460 PRK13768 GTPase; Provisional 96.1 0.0089 1.9E-07 52.7 4.8 37 84-123 3-39 (253)
461 TIGR02768 TraA_Ti Ti-type conj 96.1 0.023 4.9E-07 58.1 8.2 25 83-107 368-392 (744)
462 PRK13975 thymidylate kinase; P 96.1 0.0057 1.2E-07 51.6 3.4 24 84-107 3-26 (196)
463 PRK06761 hypothetical protein; 96.1 0.013 2.9E-07 52.1 5.8 25 83-107 3-27 (282)
464 TIGR03498 FliI_clade3 flagella 96.1 0.022 4.7E-07 53.7 7.5 92 82-177 139-242 (418)
465 TIGR03305 alt_F1F0_F1_bet alte 96.0 0.016 3.5E-07 54.8 6.6 94 82-177 137-244 (449)
466 PRK10646 ADP-binding protein; 96.0 0.014 3E-07 46.8 5.3 40 68-107 11-52 (153)
467 PRK13946 shikimate kinase; Pro 96.0 0.0067 1.4E-07 50.8 3.7 25 83-107 10-34 (184)
468 PF13521 AAA_28: AAA domain; P 96.0 0.0052 1.1E-07 50.3 2.9 21 86-106 2-22 (163)
469 COG4088 Predicted nucleotide k 96.0 0.005 1.1E-07 51.2 2.8 25 84-108 2-26 (261)
470 PRK10078 ribose 1,5-bisphospho 96.0 0.0055 1.2E-07 51.4 3.1 24 84-107 3-26 (186)
471 COG3854 SpoIIIAA ncharacterize 96.0 0.024 5.2E-07 48.1 6.8 118 74-204 128-253 (308)
472 PRK05057 aroK shikimate kinase 96.0 0.0064 1.4E-07 50.2 3.4 25 83-107 4-28 (172)
473 PRK09435 membrane ATPase/prote 96.0 0.021 4.5E-07 52.2 6.9 36 72-107 43-80 (332)
474 cd01132 F1_ATPase_alpha F1 ATP 96.0 0.031 6.7E-07 49.4 7.7 91 82-177 68-173 (274)
475 PRK14531 adenylate kinase; Pro 96.0 0.0062 1.3E-07 50.9 3.4 24 84-107 3-26 (183)
476 PRK13948 shikimate kinase; Pro 96.0 0.0071 1.5E-07 50.3 3.6 26 82-107 9-34 (182)
477 PRK14532 adenylate kinase; Pro 96.0 0.0057 1.2E-07 51.3 3.1 23 85-107 2-24 (188)
478 PRK09302 circadian clock prote 96.0 0.023 4.9E-07 55.7 7.6 90 82-176 30-141 (509)
479 cd03213 ABCG_EPDR ABCG transpo 96.0 0.024 5.1E-07 47.9 6.8 27 81-107 33-59 (194)
480 PHA02530 pseT polynucleotide k 96.0 0.0065 1.4E-07 55.1 3.6 24 84-107 3-26 (300)
481 PRK13657 cyclic beta-1,2-gluca 96.0 0.043 9.4E-07 54.8 9.7 27 81-107 359-385 (588)
482 PHA02774 E1; Provisional 96.0 0.095 2.1E-06 51.0 11.4 49 69-122 419-468 (613)
483 TIGR03574 selen_PSTK L-seryl-t 96.0 0.005 1.1E-07 54.2 2.7 23 85-107 1-23 (249)
484 PF10923 DUF2791: P-loop Domai 96.0 0.069 1.5E-06 50.1 10.2 79 62-143 25-113 (416)
485 PF01078 Mg_chelatase: Magnesi 95.9 0.015 3.2E-07 49.0 5.2 44 62-107 3-46 (206)
486 PRK00698 tmk thymidylate kinas 95.9 0.018 4E-07 48.8 6.0 25 83-107 3-27 (205)
487 cd01428 ADK Adenylate kinase ( 95.9 0.0064 1.4E-07 51.2 3.1 22 86-107 2-23 (194)
488 COG4619 ABC-type uncharacteriz 95.9 0.013 2.7E-07 47.3 4.4 25 83-107 29-53 (223)
489 TIGR01817 nifA Nif-specific re 95.9 0.028 6.1E-07 55.4 7.9 47 61-107 195-243 (534)
490 COG0396 sufC Cysteine desulfur 95.9 0.048 1E-06 46.4 8.0 26 82-107 29-54 (251)
491 TIGR02974 phageshock_pspF psp 95.9 0.014 3.1E-07 53.5 5.5 44 64-107 1-46 (329)
492 PRK06936 type III secretion sy 95.9 0.035 7.5E-07 52.5 8.1 92 81-177 160-264 (439)
493 TIGR01287 nifH nitrogenase iro 95.9 0.009 1.9E-07 53.5 4.0 38 84-124 1-38 (275)
494 PRK07721 fliI flagellum-specif 95.8 0.045 9.7E-07 52.1 8.7 91 81-176 156-259 (438)
495 COG0703 AroK Shikimate kinase 95.8 0.0095 2.1E-07 48.5 3.6 24 84-107 3-26 (172)
496 PLN02348 phosphoribulokinase 95.8 0.06 1.3E-06 50.0 9.2 27 81-107 47-73 (395)
497 TIGR02533 type_II_gspE general 95.8 0.026 5.6E-07 54.6 7.1 105 65-182 224-328 (486)
498 TIGR02173 cyt_kin_arch cytidyl 95.8 0.0084 1.8E-07 49.3 3.4 23 85-107 2-24 (171)
499 COG2019 AdkA Archaeal adenylat 95.8 0.0092 2E-07 47.9 3.3 25 83-107 4-28 (189)
500 cd01134 V_A-ATPase_A V/A-type 95.8 0.14 2.9E-06 46.9 11.1 50 82-136 156-206 (369)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-55 Score=436.89 Aligned_cols=365 Identities=45% Similarity=0.802 Sum_probs=325.0
Q ss_pred hhhhhhcccccCCCcchhchHHHHHHHHHHHHHhhhccCCCCcccC-CCCCCccccCCCCCcc-ccchhHHHHHHHHHhc
Q 043737 3 EVEKLCLVCLWSKNCSSGYKIGRKVFKTLQQVQGLTNEGDFKEVPQ-PVPENLVDERPLPPTV-VGLQSTFDRVWRCLME 80 (371)
Q Consensus 3 ~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-vGR~~~~~~l~~~L~~ 80 (371)
+.+.-|+..+|..+...-|.+++++-+..+.++.+.....+..+.. +.+.......|..+.- ||.+..++++.+.|.+
T Consensus 97 ~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 97 ERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLME 176 (889)
T ss_pred HHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhcc
Confidence 4677888899999999999999999999999999998876655543 2222222333333333 9999999999999998
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
++..+++|+||||+||||||+++.++...+..+|+.++|+.+++.++...+..+|+..++.....+......+....+.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 87799999999999999999999999955899999999999999999999999999999887766666666889999999
Q ss_pred HhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCC
Q 043737 161 NMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEIL 239 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~ 239 (371)
.|+++|++||+||+|+..+|+.+..++| ....|++|++|||+..++.. +++...+++.-|+++|||+||++.++....
T Consensus 257 ~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 257 LLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred HhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 9999999999999999999999999999 66889999999999999988 777888999999999999999999987765
Q ss_pred CCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhcc-cccCCCChhHHHHHHhhccCCCCCcchhH
Q 043737 240 DSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSS-AYKFSGMESRVFSRLKISYDFLPGDETRF 318 (371)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ 318 (371)
...+.++++|++++++|+|+|||+..+|+.|+.+.+..+|.++.+.+.+. ..+.+++.+.++.++..||+.|++ +.|.
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~ 414 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKS 414 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHH
Confidence 66677899999999999999999999999999999999999999999888 666677788999999999999996 9999
Q ss_pred HhchhccCCCCCccCHHHHHHHHHHcCCcccCC------ChHHHHHHHHHhCcCCcc
Q 043737 319 YLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYD------GFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 319 ~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~------~~~~~~l~~L~~~sll~~ 369 (371)
||+|||+||+|+.|+.+.|+.+|+||||+.+.. ++|++|+++|+++||++.
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998844 239999999999999875
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-47 Score=347.10 Aligned_cols=282 Identities=34% Similarity=0.603 Sum_probs=230.4
Q ss_pred chhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC
Q 043737 67 LQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE 144 (371)
Q Consensus 67 R~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~ 144 (371)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||.+++++. ..+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 678999999999999999999999985 248899999999999988889999999999987755
Q ss_pred CC-CcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhhccC-CCceeecCCC
Q 043737 145 SW-NSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQMEA-HKSFKVERLG 222 (371)
Q Consensus 145 ~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~~~-~~~~~l~~L~ 222 (371)
.. ...+..+....+.+.+.++++||||||+|+...++.+...++ ....+++||||||+..+...... ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 43 567788899999999999999999999999998888877776 66779999999999888765544 6789999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhcccccCCCChhHHHH
Q 043737 223 YEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFS 302 (371)
Q Consensus 223 ~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 302 (371)
.++|.+||.+.++.......+..++.+++|++.|+|+||||.++|++|+.+.+..+|...++.+.....+..+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876542233444567999999999999999999999976557789999999988887665556679999
Q ss_pred HHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCC
Q 043737 303 RLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYD 351 (371)
Q Consensus 303 ~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~ 351 (371)
++..||+.|++ +.|.||.+||+||+++.|+.+.|+++|+++||+...+
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 99999999999 9999999999999999999999999999999998764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-34 Score=304.43 Aligned_cols=284 Identities=17% Similarity=0.240 Sum_probs=222.2
Q ss_pred CCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC---CcC---------
Q 043737 61 PPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS---KDL--------- 126 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~~~--------- 126 (371)
.+.+|||+..++++..+|.- ++.++|+|+||||+||||||+.++++. ...|++.+|+... ...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 46799999999999988752 567899999999999999999999988 6788888887421 100
Q ss_pred --C-HHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCc
Q 043737 127 --Q-LEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 127 --~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~ 203 (371)
+ ...+..+++..+..... ..... ...+++.+.++++||||||+|+..+++.+..... +...|++||||||+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd 333 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKD 333 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCc
Confidence 0 12233444444321111 01111 2456778899999999999999888888766555 66789999999999
Q ss_pred hHHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHH
Q 043737 204 LEVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAI 283 (371)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l 283 (371)
..++.......+|+++.|+.++|++||.+.++... ..+.+..+++++|+++|+|+||||+.+|++|+. ++..+|+..+
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 99987666678999999999999999999998654 234457889999999999999999999999997 5789999999
Q ss_pred HHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCCChHHHHHHHHHh
Q 043737 284 EVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYDGFEHEIKDTLLF 363 (371)
Q Consensus 284 ~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~l~~L~~ 363 (371)
+.++... +..+..+|..||+.|+++..|.+|+++|+|+.+..++ .+..|++.+.... +.-++.|++
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----~~~l~~L~~ 477 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----NIGLKNLVD 477 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----hhChHHHHh
Confidence 9987643 2479999999999998746899999999999887654 4677887654432 233999999
Q ss_pred CcCCcc
Q 043737 364 VSFFMH 369 (371)
Q Consensus 364 ~sll~~ 369 (371)
+||++.
T Consensus 478 ksLi~~ 483 (1153)
T PLN03210 478 KSLIHV 483 (1153)
T ss_pred cCCEEE
Confidence 999864
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.68 E-value=6.3e-15 Score=153.62 Aligned_cols=275 Identities=15% Similarity=0.161 Sum_probs=174.5
Q ss_pred cCCCCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHH
Q 043737 57 ERPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSI 135 (371)
Q Consensus 57 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l 135 (371)
||+.++.+|-|+..++.|.+. ...+++.|+||+|.||||++.++++.. . .+.|+++.. ..++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~----~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N----NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C----CeEEEecCcccCCHHHHHHHH
Confidence 344567789998776665432 457899999999999999999998643 1 589999864 44667777777
Q ss_pred HHHhccCCCCC-----------CcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc--cc-ccccccCCCCCCCcEEEE
Q 043737 136 AKKINLFNESW-----------NSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD--LS-QVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 136 ~~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--~~-~~~~~l~~~~~~~~~ili 199 (371)
+..++...+.. ...+.......+...+. +++++|||||++...+ .. .+...+. ....+.+++|
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~ 157 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVV 157 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEE
Confidence 77774222110 11233334444444443 6789999999986532 22 2333333 4456778889
Q ss_pred ecCchHHH---hhccCCCceeec----CCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcC
Q 043737 200 TARELEVC---GQMEAHKSFKVE----RLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMAS 272 (371)
Q Consensus 200 TsR~~~~~---~~~~~~~~~~l~----~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~ 272 (371)
|||...-. ..........+. +|+.+|+.+||....+... ..+.+.+|++.|+|+|+++.+++..+..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99984211 111122344555 9999999999987764321 2345889999999999999999887754
Q ss_pred CCChhHHHHHHHHHhcccccCCCChhHHHHHHhh-ccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCC
Q 043737 273 KKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKI-SYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYD 351 (371)
Q Consensus 273 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~ 351 (371)
.... .......+.. .....+...+.. .+..||+ +.+.++..+|+++ . ++.+.+-.+. | .
T Consensus 232 ~~~~--~~~~~~~~~~------~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~--~~~~l~~~l~---~---~-- 291 (903)
T PRK04841 232 NNSS--LHDSARRLAG------INASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-S--MNDALIVRVT---G---E-- 291 (903)
T ss_pred CCCc--hhhhhHhhcC------CCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-c--CCHHHHHHHc---C---C--
Confidence 3211 0111111100 011245555444 4789999 8999999999997 3 4444333221 2 1
Q ss_pred ChHHHHHHHHHhCcCCc
Q 043737 352 GFEHEIKDTLLFVSFFM 368 (371)
Q Consensus 352 ~~~~~~l~~L~~~sll~ 368 (371)
..+...+++|.++++|.
T Consensus 292 ~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 292 ENGQMRLEELERQGLFI 308 (903)
T ss_pred CcHHHHHHHHHHCCCee
Confidence 22678899998888863
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=3.1e-14 Score=134.39 Aligned_cols=296 Identities=14% Similarity=0.097 Sum_probs=177.7
Q ss_pred CCCCCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 133 (371)
...|+.|+||++++++|...+.+ ...+.+.|+|++|+|||++++.++++.. .....-.++++++....+...++.
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHH
Confidence 33568899999999999998854 3456789999999999999999999873 222233567777777778889999
Q ss_pred HHHHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCcc---cccccccccCC-CCCC--CcEEEEecCchH
Q 043737 134 SIAKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELV---DLSQVGLPVPC-RTSA--SNKTVFTARELE 205 (371)
Q Consensus 134 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---~~~~~~~~l~~-~~~~--~~~iliTsR~~~ 205 (371)
.++.++.....+....+..+....+.+.+. +++.+||||+++... ..+.+...+.. .... +..+|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999998652222233456667777777765 456899999998643 11112111110 1112 233455554433
Q ss_pred HHhhc-------cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc----CCCcHHHHHHHHHH--c-
Q 043737 206 VCGQM-------EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKEC----GGLPLALITVGRAM--A- 271 (371)
Q Consensus 206 ~~~~~-------~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~a~~l--~- 271 (371)
+.... .....+.+++++.++..+++..++.... ....-..+.++.+++.+ |..+.++.++-... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 21111 1234679999999999999998863211 11111223344444444 55667776664322 1
Q ss_pred -CC---CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCC--CCccCHHHHHHH--HHH
Q 043737 272 -SK---KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPE--DYKIFVEDLIDC--WIC 343 (371)
Q Consensus 272 -~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~--~~~i~~~~li~~--w~a 343 (371)
.+ -+.+....+.+.+. ...+...+..||. .++.++..++...+ ...+....+... .++
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 11 13445555444331 1224456788988 67777666554332 134666666643 222
Q ss_pred --cCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 344 --EGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 344 --~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
.|..........+++++|.+.||++.
T Consensus 330 ~~~~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 330 EELGYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HHcCCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 24332222337789999999999863
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.61 E-value=5.7e-14 Score=136.06 Aligned_cols=275 Identities=18% Similarity=0.208 Sum_probs=185.2
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIA 136 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~ 136 (371)
|+.+.+.|-|....+.|.+. .+.|++.|+.|+|.|||||+.+++... ..-..+.|++++. +.++..+++.++
T Consensus 15 P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHH
Confidence 34467788897766665543 378999999999999999999998743 4445799999865 457889999999
Q ss_pred HHhccCCCCC-----------CcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc--c-cccccccCCCCCCCcEEEEe
Q 043737 137 KKINLFNESW-----------NSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD--L-SQVGLPVPCRTSASNKTVFT 200 (371)
Q Consensus 137 ~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--~-~~~~~~l~~~~~~~~~iliT 200 (371)
..++...+.. ...+...+...+...+. .+++++||||.+-..+ + ..+...+. ....+...++|
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~ 166 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVT 166 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEE
Confidence 9987544332 22334445555555554 4689999999975432 2 23444444 66688899999
Q ss_pred cCchHHHhh---ccCCCceee----cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCC
Q 043737 201 ARELEVCGQ---MEAHKSFKV----ERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASK 273 (371)
Q Consensus 201 sR~~~~~~~---~~~~~~~~l----~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 273 (371)
||+.+-... --....+++ -.|+.+|+.++|....+..- .+..++.+...++|-+-|+.+++=.++.+
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 998653221 111223344 35899999999988864322 23348999999999999999999888744
Q ss_pred CChhHHHHHHHHHhcccccCCCChhHHHHH-HhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCCC
Q 043737 274 KTPREWEHAIEVLRSSAYKFSGMESRVFSR-LKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYDG 352 (371)
Q Consensus 274 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~ 352 (371)
.+.+..... +++..+.+.+. ..-.++.||+ +.+.++..+|+++. +..+ |+..-. .. +
T Consensus 241 ~~~~q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~---f~~e-L~~~Lt-----g~--~ 298 (894)
T COG2909 241 TSAEQSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR---FNDE-LCNALT-----GE--E 298 (894)
T ss_pred CcHHHHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH---hhHH-HHHHHh-----cC--C
Confidence 343322221 12222234443 3456888999 99999999999984 3322 333221 11 2
Q ss_pred hHHHHHHHHHhCcCCc
Q 043737 353 FEHEIKDTLLFVSFFM 368 (371)
Q Consensus 353 ~~~~~l~~L~~~sll~ 368 (371)
.+..++++|-+++||-
T Consensus 299 ng~amLe~L~~~gLFl 314 (894)
T COG2909 299 NGQAMLEELERRGLFL 314 (894)
T ss_pred cHHHHHHHHHhCCCce
Confidence 2888999999999874
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.61 E-value=6.5e-15 Score=128.64 Aligned_cols=198 Identities=15% Similarity=0.185 Sum_probs=105.8
Q ss_pred cccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH---------H
Q 043737 64 VVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG---------S 134 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~ 134 (371)
|+||+.++++|.+++..+..+.++|+|+.|+|||+|++++.+.. ......++|+............. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 79999999999999987777899999999999999999999987 22222344444433322211111 1
Q ss_pred HHHHhccCCCC--------CCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCcc-ccc-------ccccccC-CCCCCCc
Q 043737 135 IAKKINLFNES--------WNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELV-DLS-------QVGLPVP-CRTSASN 195 (371)
Q Consensus 135 l~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~-------~~~~~l~-~~~~~~~ 195 (371)
+...+....+. ............+.+.+. +++++||+||++... ... .+...+. .....+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 12222211111 011222333444444443 345999999998666 111 1111111 1223444
Q ss_pred EEEEecCchHHHhh--------ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 196 KTVFTARELEVCGQ--------MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 196 ~iliTsR~~~~~~~--------~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.+++++....+... ......+.+++|+.+++.+++...+... ... +...+..++|+..+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 45555444433322 1233458999999999999999976543 122 224566899999999999998753
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.59 E-value=1.3e-12 Score=122.17 Aligned_cols=294 Identities=17% Similarity=0.164 Sum_probs=172.8
Q ss_pred CCCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CCeEEEEEeCCcCCHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPND---FDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 132 (371)
.|+.|+||++++++|..++.+ ...+.+.|+|++|+|||++++.+++.+...... .-.++|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 356899999999999999864 345689999999999999999999876211111 1256788877777788899
Q ss_pred HHHHHHhc---cCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCcc-cccc-cccccCC---CC--CCCcEEEEe
Q 043737 133 GSIAKKIN---LFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELV-DLSQ-VGLPVPC---RT--SASNKTVFT 200 (371)
Q Consensus 133 ~~l~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~~-~~~~l~~---~~--~~~~~iliT 200 (371)
..++.++. ...+. ...+..+....+...+. +++++||||+++... ..+. +...+.+ .. +.+..+|.+
T Consensus 93 ~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 93 VELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999883 22211 23344555566666553 567899999998662 1111 1111111 11 123344444
Q ss_pred cCchHHHhhc-----c--CCCceeecCCChHHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHH-H
Q 043737 201 ARELEVCGQM-----E--AHKSFKVERLGYEDAWKLFEEKVGKE--ILDSHPDIPELAETVAKECGGLPLALITVGRA-M 270 (371)
Q Consensus 201 sR~~~~~~~~-----~--~~~~~~l~~L~~~ea~~ll~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~-l 270 (371)
+........+ . ....+.+++++.++..+++..++... ....+++..+.+..++..+.|.|..+..+... .
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4333221111 1 12468999999999999999887421 11122333345556677777887544332221 1
Q ss_pred --c--CC---CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCC--CCCccCHHHHHHHH
Q 043737 271 --A--SK---KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYP--EDYKIFVEDLIDCW 341 (371)
Q Consensus 271 --~--~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp--~~~~i~~~~li~~w 341 (371)
. .+ -+.+....+.+.+. ......++..||. .++.++..++..- ++..+....+...+
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 13344444443331 1223456678887 6665555544211 34457777777744
Q ss_pred H--Hc--CCcccCCChHHHHHHHHHhCcCCc
Q 043737 342 I--CE--GFLDEYDGFEHEIKDTLLFVSFFM 368 (371)
Q Consensus 342 ~--a~--g~~~~~~~~~~~~l~~L~~~sll~ 368 (371)
- ++ |..........+++++|...||+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeE
Confidence 2 12 322222233889999999999875
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.53 E-value=6.4e-13 Score=120.97 Aligned_cols=272 Identities=15% Similarity=0.132 Sum_probs=146.6
Q ss_pred CccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
..|||+++.+++|..++.. ...+.+.++|++|+|||+||+.+++.. ...+ ..+..........+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 4689999999999888862 335678999999999999999999987 2222 12221111111111 1222
Q ss_pred HHhccCC----CCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhhc--
Q 043737 137 KKINLFN----ESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQM-- 210 (371)
Q Consensus 137 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~-- 210 (371)
..++... ......+ ......+...+.+.+..+|+++..+...+. .. ..+.+.|..|++...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~----~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LD----LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ec----CCCeEEEEecCCccccCHHHHh
Confidence 2221100 0000000 111223333344444444444433222221 11 12244555677764332211
Q ss_pred cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhccc
Q 043737 211 EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSA 290 (371)
Q Consensus 211 ~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~~ 290 (371)
.....+.+++++.++..+++.+.+....... ..+.+..|++.|+|.|..+..++..+.. .. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~~--------~a--~~~~~~ 215 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRVRD--------FA--QVRGQK 215 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHHH--------HH--HHcCCC
Confidence 1234678999999999999998876443222 3456889999999999777655544311 00 000000
Q ss_pred ccCCCChhHHHHHHhhccCCCCCcchhHHhc-hhccCCCCCccCHHHHHHHHHHcCCcccCCChHHHHHH-HHHhCcCCc
Q 043737 291 YKFSGMESRVFSRLKISYDFLPGDETRFYLL-YCSSYPEDYKIFVEDLIDCWICEGFLDEYDGFEHEIKD-TLLFVSFFM 368 (371)
Q Consensus 291 ~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~-~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~l~-~L~~~sll~ 368 (371)
.-....-......+...+..+++ ..+..+. .++.++.+ ++....+.... | ......+..++ .|++++|+.
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---EDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C---CCcchHHHhhhHHHHHcCCcc
Confidence 00000001222235566778887 5665555 55666644 56666555543 2 23333788888 699999986
Q ss_pred c
Q 043737 369 H 369 (371)
Q Consensus 369 ~ 369 (371)
.
T Consensus 288 ~ 288 (305)
T TIGR00635 288 R 288 (305)
T ss_pred c
Confidence 4
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.51 E-value=1.4e-11 Score=110.15 Aligned_cols=182 Identities=13% Similarity=0.155 Sum_probs=115.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+.++|+|++|+|||||++.+++... ... ..+.|+ .....+..+++..++..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~-~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD--QER-VVAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC--CCC-eEEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 3456899999999999999999998872 111 122333 23345677889999988876532 2222233333332
Q ss_pred ----H-hCCCceEEEEeCCCCcc--cccccccccCC--CCCCCcEEEEecCchHHHhhc----------cCCCceeecCC
Q 043737 161 ----N-MSNKKFVLLLDHIWELV--DLSQVGLPVPC--RTSASNKTVFTARELEVCGQM----------EAHKSFKVERL 221 (371)
Q Consensus 161 ----~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~--~~~~~~~iliTsR~~~~~~~~----------~~~~~~~l~~L 221 (371)
. ..+++.++|+||++... .++.+...... .......|++|...... ..+ .....+.+++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~-~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFR-ETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHH-HHHcCchhHHHHhheeeeeeCCCC
Confidence 2 25678899999998653 33333222210 11223345666554321 111 11345789999
Q ss_pred ChHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 222 GYEDAWKLFEEKVGKEILD-SHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 222 ~~~ea~~ll~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+|..+++...+...... ...-..+.++.|++.++|+|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999998887543311 112345789999999999999999998876
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.48 E-value=1.9e-12 Score=118.81 Aligned_cols=258 Identities=15% Similarity=0.110 Sum_probs=145.4
Q ss_pred CCCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
.-..|+|+++.++.+..++.. ...+.+.|+|++|+|||+||+.+++.. ...+ .++..... .....+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~-~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPAL-EKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccc-cChHHHHH
Confidence 346799999999998877752 335688999999999999999999997 2221 12221111 11111222
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccc---------c---------CCCCCCC
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLP---------V---------PCRTSAS 194 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~---------l---------~~~~~~~ 194 (371)
++..+ +...+|+||+++.... .+.+... + .......
T Consensus 96 ~l~~l------------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 96 ILTNL------------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHhc------------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 22222 1223555666543211 0000000 0 0001123
Q ss_pred cEEEEecCchHHHhhc--cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcC
Q 043737 195 NKTVFTARELEVCGQM--EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMAS 272 (371)
Q Consensus 195 ~~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~ 272 (371)
+-|..|++...+...+ .....+.+++++.++..+++.+.+.......+ .+.+..|++.|+|.|..+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 4455577654332211 12346899999999999999988865543333 45689999999999976665555432
Q ss_pred CCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhc-hhccCCCCCccCHHHHHHHHHHcCCcccCC
Q 043737 273 KKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLL-YCSSYPEDYKIFVEDLIDCWICEGFLDEYD 351 (371)
Q Consensus 273 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~-~la~fp~~~~i~~~~li~~w~a~g~~~~~~ 351 (371)
.|... .....-....-......+...+..|++ ..+..+. .+..|+.+ ++..+.+.... ....
T Consensus 228 -----~~a~~----~~~~~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~~~ 290 (328)
T PRK00080 228 -----DFAQV----KGDGVITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------GEER 290 (328)
T ss_pred -----HHHHH----cCCCCCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------CCCc
Confidence 11110 000000000011333445667778887 5566664 66667754 57766665443 3333
Q ss_pred ChHHHHHH-HHHhCcCCcc
Q 043737 352 GFEHEIKD-TLLFVSFFMH 369 (371)
Q Consensus 352 ~~~~~~l~-~L~~~sll~~ 369 (371)
...++.++ .|++.+|++.
T Consensus 291 ~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred chHHHHhhHHHHHcCCccc
Confidence 33777888 8999998864
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.47 E-value=5.8e-12 Score=112.83 Aligned_cols=258 Identities=17% Similarity=0.126 Sum_probs=152.0
Q ss_pred CccccchhHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 62 PTVVGLQSTF---DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 62 ~~~vGR~~~~---~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
+.+||.+..+ .-|...+..+....+.+|||+|+||||||+.++... ...| ..++...+-..-++.+++.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHH
Confidence 4456665544 234555556788899999999999999999999887 4443 2222222212222222222
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEE--ecCchHH---Hhhcc
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVF--TARELEV---CGQME 211 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~ili--TsR~~~~---~~~~~ 211 (371)
.. .....+++++|++|+++.- .+.+ .++| ....|..|+| ||.++.+ ....+
T Consensus 96 a~------------------~~~~~gr~tiLflDEIHRfnK~QQD---~lLp-~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 96 AR------------------KNRLLGRRTILFLDEIHRFNKAQQD---ALLP-HVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HH------------------HHHhcCCceEEEEehhhhcChhhhh---hhhh-hhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 10 1122478999999999743 3333 3345 5567777777 6766543 22235
Q ss_pred CCCceeecCCChHHHHHHHHHHhCCCC--CC--CCCCHHHHHHHHHHHcCCCcHHH----HHHHHHHcCCC--ChhHHHH
Q 043737 212 AHKSFKVERLGYEDAWKLFEEKVGKEI--LD--SHPDIPELAETVAKECGGLPLAL----ITVGRAMASKK--TPREWEH 281 (371)
Q Consensus 212 ~~~~~~l~~L~~~ea~~ll~~~~~~~~--~~--~~~~~~~~~~~i~~~~~g~Plal----~~~a~~l~~~~--~~~~~~~ 281 (371)
...++.+++|+.++-.+++.+.+.... .. ...-.++..+.+++.++|--.+. .+++..-.... ..+..+.
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 667899999999999999998442222 11 11123557888999999965432 22222222221 2344444
Q ss_pred HHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHH-HHHcCCccc
Q 043737 282 AIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDC-WICEGFLDE 349 (371)
Q Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~-w~a~g~~~~ 349 (371)
.+..-....+.....+..+..+|..|...=+++.+-..|..+---++|...-.++|+++ |---|+..+
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP 302 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADP 302 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCCh
Confidence 44333333344444456799999999999998665555656655666555555555543 222354443
No 13
>PF05729 NACHT: NACHT domain
Probab=99.38 E-value=5.1e-12 Score=104.18 Aligned_cols=144 Identities=15% Similarity=0.225 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CCeEEEEEeCCcCCHH---HHHHHHHHHhccCCCCCCcCCHHHHHHH
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPND---FDFVIWVVASKDLQLE---QIQGSIAKKINLFNESWNSRSLQEKSQD 157 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 157 (371)
|++.|+|.+|+||||+++.++..+...... +..++|++........ .+...+....... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---H
Confidence 589999999999999999999887422211 3467777765543322 3444444443221 111111 2
Q ss_pred HHHH-hCCCceEEEEeCCCCccccc---------c-cccccCCCCCCCcEEEEecCchHH---HhhccCCCceeecCCCh
Q 043737 158 IVKN-MSNKKFVLLLDHIWELVDLS---------Q-VGLPVPCRTSASNKTVFTARELEV---CGQMEAHKSFKVERLGY 223 (371)
Q Consensus 158 l~~~-l~~~~~LlVlDdv~~~~~~~---------~-~~~~l~~~~~~~~~iliTsR~~~~---~~~~~~~~~~~l~~L~~ 223 (371)
+... ...++++||||++|+...-. . +...+......+++++||||.... .........+.+.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 24689999999998654311 1 222233123568999999999765 33334446799999999
Q ss_pred HHHHHHHHHHhC
Q 043737 224 EDAWKLFEEKVG 235 (371)
Q Consensus 224 ~ea~~ll~~~~~ 235 (371)
++..+++++.+.
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=125.93 Aligned_cols=265 Identities=15% Similarity=0.174 Sum_probs=159.3
Q ss_pred cccchhHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH---HHHHHHHH
Q 043737 64 VVGLQSTFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE---QIQGSIAK 137 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~---~~~~~l~~ 137 (371)
++||+.+++.|...+.+ +...++.|.|.+|||||+|++++.....+.+..|-...+-......... +.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 79999999999999875 5667999999999999999999999984332332222222222222222 22222222
Q ss_pred Hh-------------------ccC---------------C---CCCC--cCCHHH-----HHHHHHHHh-CCCceEEEEe
Q 043737 138 KI-------------------NLF---------------N---ESWN--SRSLQE-----KSQDIVKNM-SNKKFVLLLD 172 (371)
Q Consensus 138 ~l-------------------~~~---------------~---~~~~--~~~~~~-----~~~~l~~~l-~~~~~LlVlD 172 (371)
++ +.. . +... ...... ....+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 110 0 0000 000011 122222223 3469999999
Q ss_pred CCC--CcccccccccccCC-----CCCCCcEEEEecCch--HHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCC
Q 043737 173 HIW--ELVDLSQVGLPVPC-----RTSASNKTVFTAREL--EVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHP 243 (371)
Q Consensus 173 dv~--~~~~~~~~~~~l~~-----~~~~~~~iliTsR~~--~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~ 243 (371)
|++ |...++-+...... ........+.|.+.. .........+.+.|.||+..+...++...++... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 996 33333332222110 001112222333332 1222224457899999999999999999987643 2
Q ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHHHcCC------CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchh
Q 043737 244 DIPELAETVAKECGGLPLALITVGRAMASK------KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETR 317 (371)
Q Consensus 244 ~~~~~~~~i~~~~~g~Plal~~~a~~l~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 317 (371)
...+....|++++.|+|+.+..+...+... .+...|......++. .+.. +.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhh-HHHHHHHHHHHhcCCH-HHH
Confidence 234558999999999999999999998864 344556553333222 2222 3466678899999999 899
Q ss_pred HHhchhccCCCCCccCHHHHHHH
Q 043737 318 FYLLYCSSYPEDYKIFVEDLIDC 340 (371)
Q Consensus 318 ~~l~~la~fp~~~~i~~~~li~~ 340 (371)
.++...||++..|. .+.|-.+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l 332 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAAL 332 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHH
Confidence 99999999996665 3444443
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=1.1e-10 Score=114.48 Aligned_cols=292 Identities=16% Similarity=0.170 Sum_probs=163.9
Q ss_pred CCCccccchhHHHHHHHHHhc----C-CceEEEEEcCCCCcHHHHHHHHHhhccCC--CCCC--CeEEEEEeCCcCCHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME----E-QMGIVGLYGMGEVGKTTLLTQINKKFLHT--PNDF--DFVIWVVASKDLQLEQ 130 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~----~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~f--~~~~wv~~~~~~~~~~ 130 (371)
.|+.+.||++++++|...|.. . ...++.|+|++|+|||++++.+++.+... .... -.++++++....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 367789999999999988864 2 23567899999999999999998876311 1111 2467888777778889
Q ss_pred HHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC---CCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE--ecCc
Q 043737 131 IQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS---NKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF--TARE 203 (371)
Q Consensus 131 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili--TsR~ 203 (371)
++..|..++....+. ........+..+...+. ....+||||+++.... -+.+...+.+....+++++| +|..
T Consensus 833 IYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 999999888443322 23334445555555542 2346999999985432 11122222222223445443 3332
Q ss_pred hHH--------HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHHHcCCCcHHHHHHHHHHcCCC
Q 043737 204 LEV--------CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPD-IPELAETVAKECGGLPLALITVGRAMASKK 274 (371)
Q Consensus 204 ~~~--------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~Plal~~~a~~l~~~~ 274 (371)
..+ ...+ ....+..+|++.++-.+++..++.......+++ ++-+|+.++...|..-.||.++-.......
T Consensus 912 lDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 111 1111 123467799999999999999886421112222 222333333334445566666544432211
Q ss_pred ----ChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhcc-CC--CCCccCHHHHHHHHH--Hc-
Q 043737 275 ----TPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSS-YP--EDYKIFVEDLIDCWI--CE- 344 (371)
Q Consensus 275 ----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~-fp--~~~~i~~~~li~~w~--a~- 344 (371)
+.+....+.+++. ...+......||. ..+.+|..+.. .. ....++...+....- ++
T Consensus 991 gskVT~eHVrkAleeiE-------------~srI~e~IktLPl-HqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~ 1056 (1164)
T PTZ00112 991 GQKIVPRDITEATNQLF-------------DSPLTNAINYLPW-PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVET 1056 (1164)
T ss_pred CCccCHHHHHHHHHHHH-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHh
Confidence 1222222222221 1223345567887 55555553332 22 123466666655432 23
Q ss_pred -----CCcccCCChHHHHHHHHHhCcCCc
Q 043737 345 -----GFLDEYDGFEHEIKDTLLFVSFFM 368 (371)
Q Consensus 345 -----g~~~~~~~~~~~~l~~L~~~sll~ 368 (371)
|...... ...+++.+|...|++-
T Consensus 1057 ~Gk~iGv~plTq-RV~d~L~eL~~LGIIl 1084 (1164)
T PTZ00112 1057 SGKYIGMCSNNE-LFKIMLDKLVKMGILL 1084 (1164)
T ss_pred hhhhcCCCCcHH-HHHHHHHHHHhcCeEE
Confidence 3333333 5888899999988763
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.27 E-value=2.3e-10 Score=108.26 Aligned_cols=222 Identities=16% Similarity=0.098 Sum_probs=124.2
Q ss_pred CCccccchhHHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDR---VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 61 ~~~~vGR~~~~~~---l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
-+.|||++..+.. |..++..+..+.+.|+|++|+||||||+.+++.. ...| +.++.........+.+..
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH
Confidence 4568999988766 8888877777788999999999999999999886 2222 222211111111112221
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE--ecCchHH---Hhh
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF--TARELEV---CGQ 209 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili--TsR~~~~---~~~ 209 (371)
. .... ..+++.+|+||+++.... .+.+...+. .+..++| ||.+... ...
T Consensus 83 ~-------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 83 E-------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred H-------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHH
Confidence 1 1111 135678999999986532 222322222 2444444 3443221 111
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcC---CCChhHHHHHHHHH
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMAS---KKTPREWEHAIEVL 286 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~---~~~~~~~~~~l~~l 286 (371)
.+....+.+.+++.++...++.+.+.........-..+..+.|++.++|.+..+..+...... .-+.+.....+...
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQKR 219 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Confidence 233467899999999999999987643211111223566888999999999876555444321 11333334433322
Q ss_pred hcccccCCCChhHHHHHHhhccCCCCC
Q 043737 287 RSSAYKFSGMESRVFSRLKISYDFLPG 313 (371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~s~~~L~~ 313 (371)
.............+...+..|...-++
T Consensus 220 ~~~~d~~~~~~~~~isa~~ks~rgsd~ 246 (413)
T PRK13342 220 AARYDKDGDEHYDLISALHKSIRGSDP 246 (413)
T ss_pred hhccCCCccHHHHHHHHHHHHHhcCCH
Confidence 211111111223455556666655555
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=2.6e-10 Score=111.33 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTP------------------NDFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 122 (371)
..+||.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.+.... +.|..+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 568999999999999997765 45678999999999999999998872110 01111222222
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEe
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFT 200 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliT 200 (371)
.....++++ +++++..... -..++.-++|||+++.... ++.+...+. ....++++|++
T Consensus 96 as~rgVDdI-ReLIe~a~~~------------------P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILa 155 (830)
T PRK07003 96 ASNRGVDEM-AALLERAVYA------------------PVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILA 155 (830)
T ss_pred cccccHHHH-HHHHHHHHhc------------------cccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEE
Confidence 211111111 1111111100 0123455899999986643 444444444 34456777776
Q ss_pred cCchH-HH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-HHHHHHHH
Q 043737 201 ARELE-VC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP-LALITVGR 268 (371)
Q Consensus 201 sR~~~-~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~ 268 (371)
|.+.. +. ...+....+.+.+++.++..+.+.+.+....... ..+..+.|++.++|.. -+|.++-.
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66543 32 2234457899999999999999999876544322 2455888999999865 46665433
No 18
>PRK06893 DNA replication initiation factor; Validated
Probab=99.23 E-value=1.3e-10 Score=100.93 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+.+.|+|++|+|||+|+..+++... .....+.|+++... ......+ .+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~~~-----------------------~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSPAV-----------------------LEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhHHH-----------------------Hhh
Confidence 456789999999999999999999872 22234567665321 0011111 111
Q ss_pred hCCCceEEEEeCCCCc---ccccc-cccccCCCCCCCcEE-EEecCc---------hHHHhhccCCCceeecCCChHHHH
Q 043737 162 MSNKKFVLLLDHIWEL---VDLSQ-VGLPVPCRTSASNKT-VFTARE---------LEVCGQMEAHKSFKVERLGYEDAW 227 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~~~i-liTsR~---------~~~~~~~~~~~~~~l~~L~~~ea~ 227 (371)
+. +.-+|+|||++.. ..|+. +...+......+..+ ++|+.. +.+.+.+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 11 2249999999853 22321 222222122234455 455554 244455556678899999999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 228 KLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+++++.+.......+ ++....|++.+.|....+..+...|
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999988864443333 4558899999988877766665544
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.22 E-value=1.1e-10 Score=101.50 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=107.7
Q ss_pred Ccccc--chhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 62 PTVVG--LQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 62 ~~~vG--R~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
++|++ .+..++.+..++.....+.+.|+|++|+|||+||+.+++... ......+++++..-.. ....+.
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~---~~~~~~--- 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ---ADPEVL--- 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH---hHHHHH---
Confidence 44552 455777777776556678999999999999999999998872 2223455665443211 001111
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCchH---------H
Q 043737 140 NLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTARELE---------V 206 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~~---------~ 206 (371)
..+.+. -+|||||++.... .+.+...+......+..+|+||+... +
T Consensus 86 --------------------~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 86 --------------------EGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred --------------------hhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 112222 3899999985432 22232222211123447888887532 1
Q ss_pred HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 207 CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 207 ~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
.........+.+++++.++...+++......... -.++.++.|.+.+.|+|..+..+...+
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222234678999999999999998765432222 234557888889999998888775544
No 20
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.21 E-value=3e-09 Score=94.20 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=135.8
Q ss_pred CccccchhHHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDR---VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 62 ~~~vGR~~~~~~---l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
..+||.++.+.+ |.+++.++..+.+.+||++|+||||||+.++..- +.+- +.||..+....-..-.+.+.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 346776655433 4555556788999999999999999999998876 2222 5677766544433444444443
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCC--cccccccccccCCCCCCCcEEEE--ecCchHH---Hhhcc
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWE--LVDLSQVGLPVPCRTSASNKTVF--TARELEV---CGQME 211 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~~~ili--TsR~~~~---~~~~~ 211 (371)
... ...+.+++++|++|+++. ..+.+ .++| ....|..++| ||.++.+ ...++
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHRFNksQQD---~fLP-~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLP-HVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhhhhhhhhh---cccc-eeccCceEEEecccCCCccchhHHHHh
Confidence 311 112457889999999974 33333 3456 6667877777 7777654 22235
Q ss_pred CCCceeecCCChHHHHHHHHHHhC---CCC---CCCCC----CHHHHHHHHHHHcCCCcH----HHHHHHHHH--cCCC-
Q 043737 212 AHKSFKVERLGYEDAWKLFEEKVG---KEI---LDSHP----DIPELAETVAKECGGLPL----ALITVGRAM--ASKK- 274 (371)
Q Consensus 212 ~~~~~~l~~L~~~ea~~ll~~~~~---~~~---~~~~~----~~~~~~~~i~~~~~g~Pl----al~~~a~~l--~~~~- 274 (371)
...++.|+.|+.++...++.+... ... ...+. -...+.+-++..|+|-.. ++.+.+... +...
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~ 351 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQS 351 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 567899999999999999987432 111 11121 234567888889999654 233332222 2211
Q ss_pred --ChhHHHHHHHHHhccc---ccCCCChhHHHHHHhhccCCCCC
Q 043737 275 --TPREWEHAIEVLRSSA---YKFSGMESRVFSRLKISYDFLPG 313 (371)
Q Consensus 275 --~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~l~~s~~~L~~ 313 (371)
..-...++.+.|..+. +.....+.+...+|..|...=+.
T Consensus 352 ~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~ 395 (554)
T KOG2028|consen 352 SRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQ 395 (554)
T ss_pred ccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCcc
Confidence 1122333334444442 23333344677778888877665
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.17 E-value=1.3e-09 Score=100.81 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=112.7
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHH----
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIA---- 136 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~---- 136 (371)
+.++|++..++.|..++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.+++..... .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 67899999999999998776666789999999999999999998872 12211 234444332110 0000000
Q ss_pred --HHhccCCCCCCcCCHHHHHHHHHHH----h--CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCch-H
Q 043737 137 --KKINLFNESWNSRSLQEKSQDIVKN----M--SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTAREL-E 205 (371)
Q Consensus 137 --~~l~~~~~~~~~~~~~~~~~~l~~~----l--~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~~-~ 205 (371)
..++.. .. ......+....+.+. . .+.+-+||+||++.... ...+...+. .....+++|+|+... .
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 000000 00 011111222222211 1 13345899999975532 222322232 233456677766442 2
Q ss_pred HHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 206 VCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 206 ~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
+.. ..+....+.+.+++.++...++...+....... ..+.+..+++.++|.+..+.....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 221 123345789999999999999998775444222 245688999999998766554443
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.1e-09 Score=105.76 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=109.7
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTP------------------NDFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 122 (371)
..+||.+...+.|.+++..++ ...+.++|+.|+||||+|+.+++.+.... +.+..++.++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 568999999999999998765 46779999999999999999998872100 01111222222
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEe
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFT 200 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliT 200 (371)
+....+.++ +.++..... .-..++.-++|||+++... ..+.+...+. ....++.+|++
T Consensus 95 As~~~VddI-Reli~~~~y------------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILa 154 (702)
T PRK14960 95 ASRTKVEDT-RELLDNVPY------------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFA 154 (702)
T ss_pred cccCCHHHH-HHHHHHHhh------------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEE
Confidence 111111111 111111100 0012455699999998653 3344444443 33345666666
Q ss_pred cCch-HHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 201 AREL-EVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 201 sR~~-~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
|.+. .+. ...+....+++.+++.++..+.+...+....... ..+.+..|++.++|.+..+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 5543 222 2234557899999999999999998876544222 24458889999999775433
No 23
>PF14516 AAA_35: AAA-like domain
Probab=99.14 E-value=1.6e-08 Score=92.61 Aligned_cols=272 Identities=13% Similarity=0.098 Sum_probs=148.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-----CCHHHHHH-
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-----LQLEQIQG- 133 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~- 133 (371)
..+.+|+|....+++.+.+.+ ....+.|.|+..+|||+|...+.+... ..-..++++++... .+...+++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~---~~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQ---QQGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHH---HCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 346678999677788887754 246999999999999999999999883 22335667776542 24554444
Q ss_pred ---HHHHHhccCCCC---C--CcCCHHHHHHHHHHHh---CCCceEEEEeCCCCccccc----ccccccC-C----C-C-
Q 043737 134 ---SIAKKINLFNES---W--NSRSLQEKSQDIVKNM---SNKKFVLLLDHIWELVDLS----QVGLPVP-C----R-T- 191 (371)
Q Consensus 134 ---~l~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~----~~~~~l~-~----~-~- 191 (371)
.+..+++....- + ...........+.+.+ .+++.+|+||+++...... .+...+. | . .
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 444455443210 0 1112223333343332 2589999999998654321 1111111 0 0 0
Q ss_pred -CCCcEEE-EecCchHHHhh-----ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 192 -SASNKTV-FTARELEVCGQ-----MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 192 -~~~~~il-iTsR~~~~~~~-----~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
-..-+++ +.+........ ...+..+.|++++.+|...|+...... .. .+..++|...+||||..+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~---~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS---QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC---HHHHHHHHHHHCCCHHHHH
Confidence 0111222 22211111100 123457899999999999999876422 11 2238999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCC--CCcchhHHhchhccCCCCCccCHHHHHHHHH
Q 043737 265 TVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFL--PGDETRFYLLYCSSYPEDYKIFVEDLIDCWI 342 (371)
Q Consensus 265 ~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L--~~~~~~~~l~~la~fp~~~~i~~~~li~~w~ 342 (371)
.++..+.... ...+..++.-.... ......+... ...| .+ +.+..+...-.-+....++......+ .
T Consensus 238 ~~~~~l~~~~--~~~~~l~~~a~~~~---~~~~~hL~~l----~~~L~~~~-~L~~~~~~il~~~~~~~~~~~~~~~L-~ 306 (331)
T PF14516_consen 238 KACYLLVEEQ--ITLEQLLEEAITDN---GIYNDHLDRL----LDRLQQNP-ELLEAYQQILFSGEPVDLDSDDIYKL-E 306 (331)
T ss_pred HHHHHHHHcc--CcHHHHHHHHHHhc---ccHHHHHHHH----HHHHccCH-HHHHHHHHHHhCCCCcccChHHHHHH-H
Confidence 9999997632 11222222111111 1111112222 2223 22 45555554433344455665555544 3
Q ss_pred HcCCcccCCCh
Q 043737 343 CEGFLDEYDGF 353 (371)
Q Consensus 343 a~g~~~~~~~~ 353 (371)
.-|+|...++.
T Consensus 307 ~~GLV~~~~~~ 317 (331)
T PF14516_consen 307 SLGLVKRDGNQ 317 (331)
T ss_pred HCCeEEEeCCE
Confidence 55888777554
No 24
>PRK04195 replication factor C large subunit; Provisional
Probab=99.14 E-value=3e-09 Score=102.68 Aligned_cols=247 Identities=18% Similarity=0.190 Sum_probs=138.5
Q ss_pred CCccccchhHHHHHHHHHhc---C-CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME---E-QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~---~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
-..++|+++.+++|.+|+.. + ..+.+.|+|++|+||||+|..+++.+ . ++ ++-++.+...+.. ....++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHH-HHHHHH
Confidence 35689999999999999864 1 26789999999999999999999987 2 22 2333444332222 233333
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc------ccccccccCCCCCCCcEEEEecCch-HHH--
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD------LSQVGLPVPCRTSASNKTVFTAREL-EVC-- 207 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~iliTsR~~-~~~-- 207 (371)
........ ....++-+||||+++.... ...+...+. ..++.+|+|+.+. ...
T Consensus 86 ~~~~~~~s----------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 86 GEAATSGS----------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHhhccCc----------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchh
Confidence 22211100 0113567999999986532 222322222 2234455555332 111
Q ss_pred hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHh
Q 043737 208 GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLR 287 (371)
Q Consensus 208 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~ 287 (371)
........+.+.+++.++....+...+.......+ .+.+..|++.++|....+......+......-+-..+- .+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~-~~~ 222 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVK-TLG 222 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHH-Hhh
Confidence 11234567899999999999999888755443332 45689999999997765554444443322111111111 111
Q ss_pred cccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccC
Q 043737 288 SSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEY 350 (371)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~ 350 (371)
. ......++.++...+..-........+.. ..++.+ .+..|+.+.+....
T Consensus 223 ~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~~ 272 (482)
T PRK04195 223 R-----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKEY 272 (482)
T ss_pred c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhcccccc
Confidence 1 11223567777766653333123322221 223333 46679998887654
No 25
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.14 E-value=1e-10 Score=105.63 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=178.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+.+.++|+|||||||++.++.. .. ..+-+.+.++.+..-.+...+...+...++.+.. +-+.....+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 3468999999999999999999988 41 3344567778888888888888888888887542 22334456666
Q ss_pred HhCCCceEEEEeCCCCcccc-cccccccCCCCCCCcEEEEecCchHHHhhccCCCceeecCCChH-HHHHHHHHHhCCC-
Q 043737 161 NMSNKKFVLLLDHIWELVDL-SQVGLPVPCRTSASNKTVFTARELEVCGQMEAHKSFKVERLGYE-DAWKLFEEKVGKE- 237 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~~-~~~~~~l~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~-ea~~ll~~~~~~~- 237 (371)
.+.+++.++|+||.....+- ......+. .....-.++.|+|..... .+.....+++|+.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhc
Confidence 77789999999998654321 11111111 233455688888875432 34556777888765 7888876665322
Q ss_pred -CCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCC---hhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCC
Q 043737 238 -ILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKT---PREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPG 313 (371)
Q Consensus 238 -~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~ 313 (371)
.+...........+|.+..+|.|++|..+++..+.-.. .+.+.+....+..........+......+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 22233444566899999999999999999998876321 22333334444444322233345688889999999999
Q ss_pred cchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCC-ChHHHHHHHHHhCcCC
Q 043737 314 DETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYD-GFEHEIKDTLLFVSFF 367 (371)
Q Consensus 314 ~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~-~~~~~~l~~L~~~sll 367 (371)
..+..+..++.|...|... ...|.+.|-..... -.+..-+-.|++.|+.
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv 289 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLV 289 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccch
Confidence 8899999999999877766 33455544332111 1144555666666654
No 26
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.2e-08 Score=94.06 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=133.3
Q ss_pred CCCCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 59 PLPPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 59 ~~~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
-.|+.+.+|+.+++++...|.. +.+..+.|+|++|+|||+.++.+++++....... .++++++....+..+++..
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~-~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV-EVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC-ceEEEeeeeCCCHHHHHHH
Confidence 3456699999999999988764 3445599999999999999999999983222222 2899999999999999999
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccccc--ccccccCCCCCCCcEEE--EecCchHH--
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVDLS--QVGLPVPCRTSASNKTV--FTARELEV-- 206 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~--~~~~~l~~~~~~~~~il--iTsR~~~~-- 206 (371)
|+.+++.. +.......+....+.+.+. ++.+++|||+++....-. .+...+.+.....++|. ..+-+..+
T Consensus 93 i~~~~~~~--p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 93 ILNKLGKV--PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHHHcCCC--CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 99999722 2245666677777777775 478899999998653332 22222221122234333 33333322
Q ss_pred ------HhhccCCCceeecCCChHHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHHcCC-CcHHHHHH
Q 043737 207 ------CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEI--LDSHPDIPELAETVAKECGG-LPLALITV 266 (371)
Q Consensus 207 ------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~--~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 266 (371)
...++ ...+..+|-+.+|-.+.+..++...- ...+++.-+++..++...+| --.||.++
T Consensus 171 ~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 171 YLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 12222 23478999999999999998874221 12334455555555566665 34455444
No 27
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.12 E-value=3.7e-09 Score=96.93 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|+++.++.+..++.....+.+.|+|++|+|||++++.+++... ...+. ..+-++.+.......+...+ ..+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i-~~~~ 93 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKI-KEFA 93 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHH-HHHH
Confidence 55899999999999999776666789999999999999999999872 11221 11222222221211111111 1111
Q ss_pred cCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc-hHHHh-hccCCCce
Q 043737 141 LFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE-LEVCG-QMEAHKSF 216 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~-~~~~~-~~~~~~~~ 216 (371)
...+ .....+-++++|+++.... ...+...+. .....+.+|+++.. ..+.. .......+
T Consensus 94 ~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 0000 0012345999999975532 223333333 23344566665533 22211 11234568
Q ss_pred eecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 217 KVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 217 ~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
++.+++.++...++...+...+... .++.+..+++.++|.+.-+....
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998876544322 24568899999999887644433
No 28
>PRK08727 hypothetical protein; Validated
Probab=99.12 E-value=1.3e-09 Score=94.86 Aligned_cols=172 Identities=10% Similarity=0.061 Sum_probs=101.1
Q ss_pred Cccccch-hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQ-STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~-~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
++|++.. ..+..+...........+.|+|++|+|||+|+..+++... .....+.|++... ....+..
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~~--- 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLRD--- 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHHH---
Confidence 4465544 3444444433333445799999999999999999988872 2223556665432 1111111
Q ss_pred cCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc---ccc-ccccccCCCCCCCcEEEEecCchH---------HH
Q 043737 141 LFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV---DLS-QVGLPVPCRTSASNKTVFTARELE---------VC 207 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~~~~~l~~~~~~~~~iliTsR~~~---------~~ 207 (371)
..+.+ .+.-+|||||++... .+. .+...+......+..+|+||+... +.
T Consensus 87 -----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 87 -----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred -----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 11111 122499999997442 121 122222212234567999988632 23
Q ss_pred hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 208 GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 208 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
+.+.....+++++++.++-.+++.+.+.......+ ++....|++.++|....+..+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHH
Confidence 33344668899999999999999987654332232 455888888888766555433
No 29
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.6e-09 Score=106.35 Aligned_cols=181 Identities=15% Similarity=0.172 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhccCCCCC-------------------CCeEEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMG-IVGLYGMGEVGKTTLLTQINKKFLHTPND-------------------FDFVIWVV 121 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 121 (371)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+.. ... |..+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 56899999999999999876654 5689999999999999999998731 111 11112221
Q ss_pred eCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEE
Q 043737 122 ASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 122 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~ili 199 (371)
......+.. .+.+...+.. .-..++.-++|||+++.. ...+.+...+. ....++++|+
T Consensus 95 Aas~~kVDd-IReLie~v~~------------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDD-TRELLDNVQY------------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLL 154 (944)
T ss_pred cccccCHHH-HHHHHHHHHh------------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 111111111 1222221110 011356679999999865 33444444444 3344555555
Q ss_pred ec-CchHHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 200 TA-RELEVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 200 Ts-R~~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
+| ....+. ...+....+.+.+|+.++...++.+.+...... ...+.+..|++.++|.|.-+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 444333 223445789999999999999998877543322 22456889999999988644433
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=7e-09 Score=96.40 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=107.5
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCC-------------------CCeEEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPND-------------------FDFVIWVV 121 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 121 (371)
..++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++.+. .... +..+.++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 6689999999999999877554 5678999999999999999998872 1110 01111111
Q ss_pred eCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE
Q 043737 122 ASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 122 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili 199 (371)
........+ .+++...+.... ..+++-++|+|+++.... ++.+...+. ....++.+|+
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~~p------------------~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl 154 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYYSP------------------SKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFIL 154 (363)
T ss_pred ccccCCHHH-HHHHHHHHhcCc------------------ccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEE
Confidence 111111111 112222111000 123455999999986643 334433443 3344556666
Q ss_pred ecCc-hHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 200 TARE-LEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 200 TsR~-~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
+|.+ ..+... .+....+++.+++.++..+.+...+....... .++.+..|++.++|.|..+.
T Consensus 155 ~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 155 ATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 5544 333222 23456789999999999999988765433222 23557889999999886433
No 31
>PTZ00202 tuzin; Provisional
Probab=99.09 E-value=2.3e-08 Score=91.82 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHHHHhhhccCCCCcccCCCCCCccccCCCCCccccchhHHHHHHHHHhc---CCceEEEEEcCCCCcHH
Q 043737 21 YKIGRKVFKTLQQVQGLTNEGDFKEVPQPVPENLVDERPLPPTVVGLQSTFDRVWRCLME---EQMGIVGLYGMGEVGKT 97 (371)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKT 97 (371)
|+-..+=-++...++.+.+..+. .+......|+.++.|+||+.++.+|...|.+ +..+++.|+|++|+|||
T Consensus 227 y~rqQR~~Ql~~Av~tL~~~~~~------~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKT 300 (550)
T PTZ00202 227 YRTQQRSYQLKVAVSTLTQPLNP------RPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKS 300 (550)
T ss_pred HHHHHhHHHHHHHHHHhhcccCC------CcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHH
Confidence 44444444555666666654321 1122223345568999999999999999864 23569999999999999
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-----C-CCceEEEE
Q 043737 98 TLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-----S-NKKFVLLL 171 (371)
Q Consensus 98 tLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVl 171 (371)
||++.+.... . + ..++++.. +..+++..++.+|+... .....++...+.+.+ . +++.+||+
T Consensus 301 TLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 301 SLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRSVVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHhcC---C--c-eEEEECCC---CHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999776 1 1 13333333 67999999999999732 222234444444333 2 55666665
Q ss_pred eCCCCccccccc---ccccCCCCCCCcEEEEecCchHHHhh---ccCCCceeecCCChHHHHHHHHHHh
Q 043737 172 DHIWELVDLSQV---GLPVPCRTSASNKTVFTARELEVCGQ---MEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 172 Ddv~~~~~~~~~---~~~l~~~~~~~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
-== +..++..+ ...+. ....-|.|++----+.+... +..-..|.+++++.++|..+-+...
T Consensus 368 ~lr-eg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 368 KLR-EGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred Eec-CCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 422 22222211 01111 33345666653332222111 1223457899999999999887765
No 32
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.09 E-value=1.8e-09 Score=94.09 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=105.2
Q ss_pred Cccc-cch-hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 62 PTVV-GLQ-STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 62 ~~~v-GR~-~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
++|+ |.. ..+..+.++......+.+.|+|++|+|||+|+..+++... .....+.++++..... ...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~---~~~------ 89 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW---FVP------ 89 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---hhH------
Confidence 3444 633 3444444444344557899999999999999999998872 2234566776643110 000
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc---ccccc-cccccCCC-CCCCcEEEEecCch---------H
Q 043737 140 NLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL---VDLSQ-VGLPVPCR-TSASNKTVFTAREL---------E 205 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~-~~~~~~iliTsR~~---------~ 205 (371)
+ +.+.+.+ --+|+|||++.. ..++. +...+... ...+.++|+||+.. .
T Consensus 90 -------------~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 90 -------------E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred -------------H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 1 1111111 138999999753 22222 21222211 12234788988764 2
Q ss_pred HHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 206 VCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+.+..+.++++.+++.++-.+++++.+....... .++.+..|++.+.|....+..+...+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 334455667899999999999999988664433233 34568899999988776666555544
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.3e-08 Score=97.89 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=109.5
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|.+...+.|..++..+.. ..+.++|++|+||||+|+.+++.+. ..+.+...+|.+.+.. .+....+.-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 5689999999999999877654 4569999999999999999998872 1111222222221100 00000000000000
Q ss_pred cCCCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEec-CchHHHh-hcc
Q 043737 141 LFNESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTA-RELEVCG-QME 211 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTs-R~~~~~~-~~~ 211 (371)
.. .....++ ++.+.+.+ .+++-++|||+++... .++.+...+. ....++.+|+++ ....+.. ..+
T Consensus 92 --~~--~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 --AA--SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred --cc--ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 11222221 2455699999998553 2444444444 333344544444 3333322 223
Q ss_pred CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHH
Q 043737 212 AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALIT 265 (371)
Q Consensus 212 ~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 265 (371)
....+++.+++.++..+++...+...+... ..+.+..|++.++|.+.-+..
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln 216 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAES 216 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 456899999999999999999875544222 245689999999999865543
No 34
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=7.7e-09 Score=99.63 Aligned_cols=183 Identities=18% Similarity=0.149 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPN------------------DFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 122 (371)
..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+..... .|..+++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5689999999999999977554 45789999999999999999987621000 1122223322
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEE-
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTV- 198 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~il- 198 (371)
.....+++ .+.+... +... ..+++-++|+|+++.... .+.+...+. ....++.+|
T Consensus 96 as~~gvd~-ir~ii~~-------------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEE-TKEILDN-------------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFIL 154 (546)
T ss_pred ccccCHHH-HHHHHHH-------------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEE
Confidence 22112111 1112211 1111 124566999999986533 444444444 333455444
Q ss_pred EecCchHHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHHHH
Q 043737 199 FTARELEVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITVGR 268 (371)
Q Consensus 199 iTsR~~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 268 (371)
+||....+. ...+....+++.+++.++....+.+.+...+... ..+.+..|++.++|.+. ++..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455444343 2234567899999999999999888765433222 24557889999999764 5555433
No 35
>PRK09087 hypothetical protein; Validated
Probab=99.02 E-value=4.5e-09 Score=90.79 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+.+.|+|++|+|||+|++.++... . ..+++.. .+...+...+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~~~~--------------------- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAANAAA--------------------- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHHhhh---------------------
Confidence 35679999999999999999888764 1 1233221 22222222111
Q ss_pred hCCCceEEEEeCCCCcc-cccccccccCCCCCCCcEEEEecCc---------hHHHhhccCCCceeecCCChHHHHHHHH
Q 043737 162 MSNKKFVLLLDHIWELV-DLSQVGLPVPCRTSASNKTVFTARE---------LEVCGQMEAHKSFKVERLGYEDAWKLFE 231 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~~~iliTsR~---------~~~~~~~~~~~~~~l~~L~~~ea~~ll~ 231 (371)
+ -+|++||++... +-+.+...+......|..+|+|++. +.+.+.+.....+++++++.++-.+++.
T Consensus 88 --~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 --E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred --c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 288899997542 1122322332233446789998874 2334445667889999999999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 232 EKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+.......+ ++....|++.+.|....+..+...|
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 98865443333 4568899999988887777554444
No 36
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.4e-08 Score=99.04 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTP-NDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
+.+||-+..+..|.+++..++. ..+.++|+.|+||||+|+.+++.+.... ....+...-.++. -.....+...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHHHHcCC
Confidence 5689999999999999987655 5678999999999999999988762110 0000100001111 11111111100
Q ss_pred ccC---CCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHH-
Q 043737 140 NLF---NESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVC- 207 (371)
Q Consensus 140 ~~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~- 207 (371)
... .........++. +.+.+.. .++.-++|||+++... ..+.+...+. ....++.+|+ |+....+.
T Consensus 92 h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhH
Confidence 000 000001111121 1111211 2344599999998653 3444444444 3334555554 44433332
Q ss_pred hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 208 GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 208 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
...+....+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+.-+..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 23345678999999999999999988765443222 345788999999977544433
No 37
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.3e-08 Score=97.92 Aligned_cols=182 Identities=14% Similarity=0.140 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTP------------------NDFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 122 (371)
..+||-+..++.|.+++.++.. ..+.++|+.|+||||+|+.+++.+.... +.+..++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 5689999999999999977655 4578999999999999999998872110 11222333333
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF- 199 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili- 199 (371)
.....++++ ++++..+.... ..++.-++|||+++... ..+.+...+. ....++.+|+
T Consensus 96 as~~~v~~i-R~l~~~~~~~p------------------~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIla 155 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYAP------------------TKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILA 155 (509)
T ss_pred cccCCHHHH-HHHHHHHhhcc------------------ccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEE
Confidence 222223222 22333222110 12455599999998653 3344444444 3334565555
Q ss_pred ecCchHHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 200 TARELEVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 200 TsR~~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
||....+. ...+....+++.+++.++....+...+...+...+ .+.+..|++.++|.+.-+...
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 44433332 22234567899999999999888877755442222 345788999999988644433
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=99.02 E-value=4.2e-09 Score=96.30 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=108.1
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|.++.++.|..++..+..+.+.++|++|+||||+|..+++.+. ...+. .++-++.+...+.. ..+.+...+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 56899999999998888777667788999999999999999998872 12222 22222222222222 2222222111
Q ss_pred cCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc-hHHHh-hccCCCce
Q 043737 141 LFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE-LEVCG-QMEAHKSF 216 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~-~~~~~-~~~~~~~~ 216 (371)
..... ...++.-+++||+++.... ...+...+. .....+++++++.. ..+.. ..+....+
T Consensus 90 ~~~~~---------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKVT---------------LPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hcccc---------------CCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 10000 0013456999999986533 222222222 22345566665543 22211 12234678
Q ss_pred eecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 217 KVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 217 ~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
++.+++.++....+...+...+...+ .+.+..|++.++|....+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999999999988765443333 3458899999999765443
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.8e-08 Score=96.00 Aligned_cols=187 Identities=18% Similarity=0.139 Sum_probs=109.7
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCCeEEEEE
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPN------------------DFDFVIWVV 121 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~ 121 (371)
-+.+||.+...+.|...+.++.. ..+.++|++|+||||+|+.+++.+..... .+..+..++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 36689999998888888877655 46899999999999999999888621100 011122222
Q ss_pred eCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE
Q 043737 122 ASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 122 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili 199 (371)
.+...+...+ +.+....... -..+++-++|+|+++... ..+.+...+. .....+.+++
T Consensus 93 aa~~~gid~i-R~i~~~~~~~------------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Il 152 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGYR------------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVL 152 (472)
T ss_pred CcccCCHHHH-HHHHHHHhhC------------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 2222222211 1222211100 012455699999997542 2333433333 2223444444
Q ss_pred -ecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHHHHHH
Q 043737 200 -TARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITVGRAM 270 (371)
Q Consensus 200 -TsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~~l 270 (371)
|+....+.. ..+....+.+.+++.++....+...+....... ..+.+..|++.++|. +.++..+-...
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443333322 224456889999999999999988875433222 245578888878654 67777765543
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=6.4e-09 Score=100.42 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=109.7
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcCCHHHHHHHHHHH-
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDLQLEQIQGSIAKK- 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~- 138 (371)
..+||.+..++.|.+++.+++. ..+.++|+.|+||||+|+.+++.+...... -.....-.++. -.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~----C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ----CRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc----cHHHHHHHcCC
Confidence 5689999999999999987654 467899999999999999999887311000 00000000000 0111111100
Q ss_pred ----hccCCCCCCcCCHHHHHHHHHHH----hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHH
Q 043737 139 ----INLFNESWNSRSLQEKSQDIVKN----MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVC 207 (371)
Q Consensus 139 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~ 207 (371)
+.+... .....++....+... ..++.-++|||+++... ..+.+...+. ....++.+|+ ||....+.
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhh
Confidence 000000 111122222111111 13455699999998653 3444444444 3344555554 55544443
Q ss_pred h-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 208 G-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 208 ~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
. ..+....+.+..++.++..+.+.+.+....... ..+.++.|++.++|.|.-..
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2 234457899999999999999988775443222 23456889999999986433
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.00 E-value=4.5e-10 Score=88.75 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC--CCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT--PNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIV 159 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 159 (371)
+.+.+.|+|++|+|||+++.++++..... ......++|+.+....+...+...++..++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35689999999999999999999986210 00145678999988889999999999999876542 456777778888
Q ss_pred HHhCCCc-eEEEEeCCCCc-c--cccccccccCCCCCCCcEEEEecCc
Q 043737 160 KNMSNKK-FVLLLDHIWEL-V--DLSQVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 160 ~~l~~~~-~LlVlDdv~~~-~--~~~~~~~~l~~~~~~~~~iliTsR~ 203 (371)
+.+...+ .+||+|+++.. . .++.+.. + ....+.++++..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l--~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-L--LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-H--TCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-H--HhCCCCeEEEEECh
Confidence 8887655 49999999765 2 1222222 1 23677788887765
No 42
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.2e-08 Score=99.63 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=108.2
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH--
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK-- 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~-- 138 (371)
..++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+. ...... +..+... .....+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg~C----~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCGVC----QSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCccc----HHHHHHhccCc
Confidence 5689999999999999987653 5789999999999999999988762 111100 0000000 000110000
Q ss_pred ---hccCCCCCCcCCHHHHHHHHHHH-----hCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc-hHHH
Q 043737 139 ---INLFNESWNSRSLQEKSQDIVKN-----MSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE-LEVC 207 (371)
Q Consensus 139 ---l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~-~~~~ 207 (371)
+.+... .....+.. +.+... ..+++-++|||+++.... .+.+...+. ....++.+|++|.+ ..+.
T Consensus 88 ~DvlEidaA--s~~gVd~I-Relle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDAA--SNTGIDNI-REVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEecc--ccCCHHHH-HHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCCccccc
Confidence 000000 11111111 111111 124556999999986533 333333333 23345566665543 2222
Q ss_pred -hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 208 -GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 208 -~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
...+....+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 1123345678899999999999998876554322 23458899999999885444433
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.00 E-value=1.3e-08 Score=101.63 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=101.5
Q ss_pred CCccccchhHHH---HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFD---RVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 61 ~~~~vGR~~~~~---~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
-+.|+|.+..+. .+...+..+..+.+.|+|++|+||||||+.+++.. ...|. .++... ....+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d------- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD------- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH-------
Confidence 356899998874 56666766777788999999999999999999876 33331 111110 01111
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHh--CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE--ecCchH--HH-h
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNM--SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF--TARELE--VC-G 208 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili--TsR~~~--~~-~ 208 (371)
..+........+ .+++.+|+|||++.... .+.+... ...+..++| ||.+.. +. .
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----lE~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----VENGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----hcCceEEEEEecCCChHhhhhhH
Confidence 111111121111 24567999999975432 2223222 223445555 333321 11 1
Q ss_pred hccCCCceeecCCChHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 209 QMEAHKSFKVERLGYEDAWKLFEEKVGKEI----LDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 209 ~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
..+....+.+++++.++...++.+.+.... .....-.++....|++.+.|....+.-+
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 122346789999999999999988764100 0011223456888999999976544433
No 44
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.97 E-value=7e-09 Score=89.28 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|+.|+|||.|.+.+++...+ ...-..+++++ ..++...+...+.. .. ...++..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~-------~~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRD-------GE----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHT-------TS----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHc-------cc----chhhhhhh
Confidence 357899999999999999999998731 12223566764 44566666555532 11 22344444
Q ss_pred CCCceEEEEeCCCCccc---c-cccccccCCCCCCCcEEEEecCch---------HHHhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWELVD---L-SQVGLPVPCRTSASNKTVFTAREL---------EVCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
.+-. +|+|||++.... + +.+...+......|.++|+|++.. .+.+.+..+-.+++.+.+.++-.++
T Consensus 96 ~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4333 999999975432 2 122222222234567899998653 2344455677899999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+.+....... .++.++.|++.+.+..-.|..+...|
T Consensus 175 l~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 175 LQKKAKERGIEL---PEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 999886554333 35568888888877777666555444
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.5e-08 Score=95.29 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-..++|.+..+..|..++..+.. ..+.++|+.|+||||+|+.+++.+. ...... ...+....+-..+.......+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~---~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIG---NEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccC---ccccCCCcHHHHHHccCCccc
Confidence 35689999999999999987664 4689999999999999999999872 111111 011111111111111110000
Q ss_pred c-cCCC-CCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHH-hhccC
Q 043737 140 N-LFNE-SWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVC-GQMEA 212 (371)
Q Consensus 140 ~-~~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~-~~~~~ 212 (371)
. .... ........++...+... ..++.-++|||+++... .++.+...+. ....++.+|+ ||....+. ...+.
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhh
Confidence 0 0000 00011111122222111 13456699999998553 3444444443 3334444444 55444442 22344
Q ss_pred CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 213 HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 213 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
...|.+.+++.++..+.+...+...+... ..+.+..|++.++|.+.-.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHH
Confidence 56799999999999999988875543222 2456899999999998533
No 46
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=6.5e-08 Score=89.36 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=110.8
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEE---EEEeCCcCCHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVI---WVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~l~ 136 (371)
...++|.+...+.|.+.+..++. ..+.++|+.|+||+++|..+++.+......-.... -.++.. ...-...+.+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHHH
Confidence 35689999999999999987664 46889999999999999999988731110000000 000000 00011222221
Q ss_pred HHhcc----CCC---C-----CCcCCHHHHHHHHHHHhC-----CCceEEEEeCCCCcc--cccccccccCCCCCCCcEE
Q 043737 137 KKINL----FNE---S-----WNSRSLQEKSQDIVKNMS-----NKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 137 ~~l~~----~~~---~-----~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~i 197 (371)
..-.. -.+ . .....+++ ++.+.+.+. +++.++|+|+++... ....+...+. ....++.+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~ 174 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLF 174 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEE
Confidence 11100 000 0 01112222 334444432 456799999998553 2334444444 33345555
Q ss_pred EEecCch-HHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 198 VFTAREL-EVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 198 liTsR~~-~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
|++|.+. .+.. ..+....+.+.+++.++..+++....... . .+....+++.++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C--HHHHHHHHHHcCCCHHHHHHH
Confidence 5555543 3322 23456789999999999999998864211 1 122367899999999855443
No 47
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=1.8e-08 Score=98.62 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=110.2
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI- 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l- 139 (371)
..+||.+..++.|.+.+..++. ..+.++|+.|+||||+|+.+++.+... .... ...+..-.....+...-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCC
Confidence 5689999999999999977654 456899999999999999999887211 1000 00001112222221100
Q ss_pred ----ccCCCCCCcCCHHHHHHHHHHH-----hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHH
Q 043737 140 ----NLFNESWNSRSLQEKSQDIVKN-----MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVC 207 (371)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~ 207 (371)
.+... .....++. +.+.+. ..++.-++|||+++... ..+.+...+. ....++++|+ ||....+.
T Consensus 88 ~D~ieidaa--s~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 88 VDLIEIDAA--SRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCceeeccc--ccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccc
Confidence 00000 01112221 122221 23556699999998653 3444444444 3334555554 55444443
Q ss_pred h-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 208 G-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 208 ~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
. ..+....+.+.+++.++....+...+....... ..+....|++.++|.+.-...+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 234457899999999999999988774433222 2345788999999987644333
No 48
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=4.5e-08 Score=93.76 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
..++|.+..+..|...+.+++ ...+.++|+.|+||||+|+.+++.+... .... .-.+..+... .....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~-~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccccCcCcCCCCCC----hHHHHHhcCC
Confidence 567999999999998887655 3688999999999999999999887211 1100 0000000000 0011110000
Q ss_pred ccC---CCCCCcCCHHHHHHHHHHH----hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHHhh
Q 043737 140 NLF---NESWNSRSLQEKSQDIVKN----MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVCGQ 209 (371)
Q Consensus 140 ~~~---~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~~~ 209 (371)
... .........++....+... ..+++-++|+|+++... .++.+...+. .....+.+|+ |++...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHH
Confidence 000 0000111111111111111 12456699999998653 3444444444 3344555544 5555444332
Q ss_pred -ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 210 -MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 210 -~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
.+....+++.+++.++....+...+....... ..+.+..|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23456789999999999999998886544222 2345788999999987544
No 49
>PF13173 AAA_14: AAA domain
Probab=98.95 E-value=3.1e-09 Score=83.62 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.+++.|.|+.|+|||||+++++++. . ....++++++...........+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~~-------------------~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADPD-------------------LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhhh-------------------hHHHHHHhh
Confidence 4689999999999999999999887 2 4456788877654321100000 222333333
Q ss_pred CCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhhc------cCCCceeecCCChHHH
Q 043737 163 SNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQM------EAHKSFKVERLGYEDA 226 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~------~~~~~~~l~~L~~~ea 226 (371)
..++.+++||+++...+|......+. ......+|++|+......... +....+++.||+..|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34678999999998888776544444 333568999998876554221 1224579999998763
No 50
>PRK05642 DNA replication initiation factor; Validated
Probab=98.95 E-value=1.2e-08 Score=88.88 Aligned_cols=155 Identities=13% Similarity=0.181 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.+.+.|+|++|+|||.|++.+++... .....++|++... +.... ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~~--------------------~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDRG--------------------PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhhh--------------------HHHHHhh
Confidence 36789999999999999999988762 2224567776532 21110 1122222
Q ss_pred CCCceEEEEeCCCCc---ccccc-cccccCCCCCCCcEEEEecCchHH---------HhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWEL---VDLSQ-VGLPVPCRTSASNKTVFTARELEV---------CGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~~~iliTsR~~~~---------~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
.+-. +||+||++.. ..++. +...+......|..+|+||+..+- .+.+..+..+++.+++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 7889999733 23322 333333223346788888875322 22334456789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
++.++.......+ ++.+..|++.+.|....+..+...|
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9866543322222 4668888888888877666655554
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.94 E-value=4.1e-08 Score=91.46 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=110.5
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCC-------------------CCCCeEEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTP-------------------NDFDFVIWVV 121 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~ 121 (371)
..++|.+..++.|..++.++.. ..+.++|++|+|||++|..++..+.... .+++ +++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 5689999999999999977654 5678999999999999999988862110 0122 22222
Q ss_pred eCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE
Q 043737 122 ASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 122 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili 199 (371)
........ ..+.+...+.... ..+++-++|+|+++... ..+.+...+. ....++.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~p------------------~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYAP------------------SSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcCc------------------ccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEE
Confidence 22111111 1222222221100 12345599999997552 2333433343 3334556555
Q ss_pred ecCchH-HHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 200 TARELE-VCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 200 TsR~~~-~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
+|.+.. +.. ..+....+++.+++.++..+++...+...+...+ ++.+..+++.++|.|..+.....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 554432 222 2234567899999999999999887754432222 45688899999999876655543
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=2.7e-08 Score=94.60 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=111.8
Q ss_pred CccccchhHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhccCCC------------------CCCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMG-IVGLYGMGEVGKTTLLTQINKKFLHTP------------------NDFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 122 (371)
..+||.+..++.|.+++..++.. .+.++|+.|+||||+|+.++..+.... ..+..++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56899999999999988776654 799999999999999999987641100 11223344444
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE-
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF- 199 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili- 199 (371)
+...+++++ +.+........ ..++.-++|+|+++.... .+.+...+. ....++.+|+
T Consensus 93 as~~~vddI-R~Iie~~~~~P------------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYLP------------------ISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhcc------------------ccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 333333322 22222221100 124455999999975532 444444444 3344555555
Q ss_pred ecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 200 TARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 200 TsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
|+....+.. ..+....+++.+++.++..+.+...+...+... .++.+..|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 444444432 234567899999999999999998876544222 2445788999999987643
No 53
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.93 E-value=2.6e-09 Score=89.70 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=33.0
Q ss_pred ccccchhHHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 63 TVVGLQSTFDRVWRCLM---EEQMGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
.||||+++++++...+. ....+.+.|+|++|+|||+|+++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999993 24568999999999999999999999983
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.93 E-value=9e-09 Score=89.53 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=100.4
Q ss_pred Cccc-cchhHH-HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 62 PTVV-GLQSTF-DRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 62 ~~~v-GR~~~~-~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
++|+ |+.... ..+.++... ...+.+.|+|++|+|||+||..+++... ..-..+.+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPL------LA---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhH------HH----
Confidence 4455 554443 444444332 3456899999999999999999998862 112234555443311 00
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccc--cccccccCCCCCCCc-EEEEecCchHHH--------
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDL--SQVGLPVPCRTSASN-KTVFTARELEVC-------- 207 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--~~~~~~l~~~~~~~~-~iliTsR~~~~~-------- 207 (371)
+ ... ...-++|+||++..... ..+...+......+. .+++|++.....
T Consensus 85 ~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 001 12338999999754321 222222221112233 466776653321
Q ss_pred hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHc
Q 043737 208 GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMA 271 (371)
Q Consensus 208 ~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~ 271 (371)
+.+.....+++++++.++-..++.+......... .++..+.+++.+.|++..+..+...+.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 1223346889999999888887776543322222 345688899999999998887776663
No 55
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=5.4e-08 Score=94.71 Aligned_cols=192 Identities=11% Similarity=0.094 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH--
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMG-IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK-- 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~-- 138 (371)
..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.++..+.. ....+ +..++.. .....+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CCccccc----HHHHHhhcccC
Confidence 56899999999999999876654 5789999999999999999988721 11000 0001110 001111100
Q ss_pred -----hccCCCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEE-EecCchH
Q 043737 139 -----INLFNESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTV-FTARELE 205 (371)
Q Consensus 139 -----l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTsR~~~ 205 (371)
+..... .....++. +.+.+.+ .+++-++|+|+++... ..+.+...+. ....++.+| +|+....
T Consensus 85 ~~~dvieidaa--s~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~k 160 (584)
T PRK14952 85 GSIDVVELDAA--SHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEK 160 (584)
T ss_pred CCceEEEeccc--cccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHh
Confidence 000000 00111111 1111111 2345599999998543 3444444444 333455544 4555444
Q ss_pred HHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHHHH
Q 043737 206 VCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITVGR 268 (371)
Q Consensus 206 ~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 268 (371)
+.. ..+....+++.+++.++..+++...+...+...+ .+.+..|++.++|.+. ++.++-.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 432 2344678999999999999999887754432222 3457888999999775 4444433
No 56
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3e-08 Score=96.13 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=108.1
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPN------------------DFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 122 (371)
..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+..... .|..+++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 5689999999999999987654 45789999999999999999888721000 0111222222
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE-
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF- 199 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili- 199 (371)
.....++. .+++...+.... ..+++-++|+|+++.... .+.+...+. ....++.+|+
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~p------------------~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYAP------------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILA 155 (527)
T ss_pred cccCCHHH-HHHHHHHHhhCc------------------ccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEE
Confidence 11111111 112222211100 124566999999986543 344444444 3334555554
Q ss_pred ecCchHHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHH
Q 043737 200 TARELEVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITV 266 (371)
Q Consensus 200 TsR~~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 266 (371)
|+....+. ...+....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+. ++.++
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44433332 1123346789999999999999988775433222 23457889999999875 44444
No 57
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=3e-08 Score=91.12 Aligned_cols=196 Identities=10% Similarity=0.081 Sum_probs=113.4
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
-..++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++.+...... +... .....+......+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 35689999999999999977653 468999999999999999999987321100 1100 011111111233333322
Q ss_pred hc-----cCCC--C-----CCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCc-EEE
Q 043737 139 IN-----LFNE--S-----WNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASN-KTV 198 (371)
Q Consensus 139 l~-----~~~~--~-----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~-~il 198 (371)
-. +..+ . ......++ +..+.+.+ .++.-++|+|+++.... .+.+...+. ....++ .|+
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiL 176 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFIL 176 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEE
Confidence 10 0000 0 01122333 23444443 24566999999986532 333433333 222334 455
Q ss_pred EecCchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 199 FTARELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 199 iTsR~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
+|++...+... .+....+.+.+++.++..+++...... .. -..+.+..+++.++|.|.....+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 56555433222 234568999999999999999885321 11 22445788999999999855433
No 58
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=4.4e-08 Score=95.18 Aligned_cols=196 Identities=15% Similarity=0.161 Sum_probs=111.0
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|.+..++.|.+++.+++ ...+.++|+.|+||||+|+.+++.+.. ....... .+ +.-.....+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~~---pC----g~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTGE---PC----NTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCCC---CC----cccHHHHHHhcCCC
Confidence 567999999999999887765 467889999999999999999988721 1110000 00 00011111111100
Q ss_pred cCC---CCCCcCCHHHHHHHHHHH-----hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHHhh
Q 043737 141 LFN---ESWNSRSLQEKSQDIVKN-----MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVCGQ 209 (371)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~~~ 209 (371)
... ........++ ++.+.+. ..+++-++|||+++... ..+.+...+. .......+|+ |+....+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHH
Confidence 000 0000011111 1112211 13456699999998652 2344444443 2233455555 4443433322
Q ss_pred -ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-HHHHHHHHHH
Q 043737 210 -MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP-LALITVGRAM 270 (371)
Q Consensus 210 -~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~~l 270 (371)
.+....+++.+++.++....+...+....... ..+.++.|++.++|.+ .++.++...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23456789999999999999988765443222 2455888999999965 6777765544
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.92 E-value=9.5e-09 Score=82.48 Aligned_cols=123 Identities=17% Similarity=0.071 Sum_probs=72.6
Q ss_pred ccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC
Q 043737 65 VGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE 144 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~ 144 (371)
+|++..+..+...+.....+.+.|+|++|+|||++++.+++... .....++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999988766678999999999999999999999872 223356666655433221111111000
Q ss_pred CCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc--cccccc---ccccCCC--CCCCcEEEEecCch
Q 043737 145 SWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL--VDLSQV---GLPVPCR--TSASNKTVFTAREL 204 (371)
Q Consensus 145 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~---~~~l~~~--~~~~~~iliTsR~~ 204 (371)
............++.++++||++.. .....+ ....... ...+..+|+||...
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111122346789999999854 111112 1111101 13577888887754
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=6.1e-08 Score=88.44 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEe-CCcCCHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVA-SKDLQLEQIQGSIA 136 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~l~ 136 (371)
..++|.+...+.+..++..+.. ..+.++|+.|+|||++|..+++.+.. ...|++...|... +....+++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3578999999999999977654 57789999999999999999987521 2345555555442 22223333 22333
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCchH-HHh-hccC
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTARELE-VCG-QMEA 212 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~~-~~~-~~~~ 212 (371)
..+.... ..+++-++|+|+++.. ...+.+...+. ....++.+|++|.+.. +.. ..+.
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhh
Confidence 3332111 1244558888988754 33555655665 5556777777765543 222 1244
Q ss_pred CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 213 HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 213 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
...+.+.++++++...++.+.... . ..+.++.++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~----~---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYND----I---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcC----C---CHHHHHHHHHHcCCCHHHHH
Confidence 578999999999999988776531 1 13347788999999886543
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.92 E-value=1.4e-08 Score=85.35 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=97.0
Q ss_pred CCCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
.-+.|||.++.++.+.-++.. +....+.+|||+|+||||||.-+++.+ ...| .+.+...-....++ ..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~---~~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF---KITSGPAIEKAGDL-AA 94 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E---EEEECCC--SCHHH-HH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe---EeccchhhhhHHHH-HH
Confidence 347899999998887655431 345789999999999999999999998 3333 22322111111111 11
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc---------ccccccccCCCC-----------CCC
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD---------LSQVGLPVPCRT-----------SAS 194 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---------~~~~~~~l~~~~-----------~~~ 194 (371)
++.. + +++.+|++|+++.... ++.....+.... .+-
T Consensus 95 il~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 95 ILTN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1111 1 2345888899986421 111111000001 112
Q ss_pred cEEEEecCchHHHhhccC-C-CceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcC
Q 043737 195 NKTVFTARELEVCGQMEA-H-KSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMAS 272 (371)
Q Consensus 195 ~~iliTsR~~~~~~~~~~-~-~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~ 272 (371)
+.|=-|||...+..-+.. . -..+++..+.+|-.+++.+.+....... .++.+.+|++.+.|-|.-..-+...++.
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 223348887655433322 2 2347999999999999988775544322 3567999999999999877766666654
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=2.3e-08 Score=96.65 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.+++.+.. .. |.... .++.-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCCC-CCcccHHHHHHHcCCC
Confidence 568999999999999987654 457889999999999999999988721 11 11000 0111111111111110
Q ss_pred cCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHHh-
Q 043737 141 LFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVCG- 208 (371)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~~- 208 (371)
... ........++. +.+.... .+++-++|+|+++... ....+...+. ....++.+|+ |+....+..
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHH
Confidence 000 00001111111 1111111 1234479999997642 2333434333 2333444444 544444432
Q ss_pred hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHHHH
Q 043737 209 QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITVGR 268 (371)
Q Consensus 209 ~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 268 (371)
..+....+++.+++.++....+...+.......+ .+.+..+++.++|.+. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2345678999999999999999987754332222 3457889999999765 4444433
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.2e-08 Score=93.13 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=110.5
Q ss_pred CCccccchhHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE-eCCcCCHHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMG-IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV-ASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~l~~~ 138 (371)
-..++|.+...+.|..++.++..+ .+.++|+.|+||||+|..+++.+. -.......-|.. ....+..=.....+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 366899999999999999876654 588999999999999999998872 111110000000 00000000111111111
Q ss_pred hccCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHH
Q 043737 139 INLFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVC 207 (371)
Q Consensus 139 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~ 207 (371)
..... ........++. ..+.+.+ .+.+-++|+||++... .++.+...+. .....+.+|+ |++...+.
T Consensus 94 ~~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhH
Confidence 00000 00011112222 2233333 2345599999998653 3444444444 3334555544 54444443
Q ss_pred hh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHH
Q 043737 208 GQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALIT 265 (371)
Q Consensus 208 ~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 265 (371)
.. ......+++.+++.++..+.+...+....... ..+.+..|+..++|.+.-+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22 23345789999999999999988775433222 245589999999998864444
No 64
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=5.1e-08 Score=98.52 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=107.9
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCC--------------------CCeEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPND--------------------FDFVIWV 120 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--------------------f~~~~wv 120 (371)
..+||.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+...... +..++++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 5689999999999999987655 457899999999999999999887311100 0011222
Q ss_pred EeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEE
Q 043737 121 VASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTV 198 (371)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~il 198 (371)
+......++++ +++...+.. .-..++.-++|||+++.+.. .+.+...+. ....++.+|
T Consensus 95 daas~~~Vd~i-R~l~~~~~~------------------~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fI 154 (824)
T PRK07764 95 DAASHGGVDDA-RELRERAFF------------------APAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFI 154 (824)
T ss_pred cccccCCHHHH-HHHHHHHHh------------------chhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEE
Confidence 21111111111 111111100 01234555899999986533 344444554 334455555
Q ss_pred E-ecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 199 F-TARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 199 i-TsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
+ |+....+.. ..+....|++..++.++..+++.+.+....... ..+.+..|++.++|.+..+
T Consensus 155 l~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 155 FATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4 544444433 234567899999999999999988775443222 2344788899999987433
No 65
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.1e-07 Score=88.51 Aligned_cols=183 Identities=9% Similarity=0.061 Sum_probs=102.8
Q ss_pred CccccchhHHHHHHHHHhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ----------MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~----------~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
+.++|.+..++.|.+++..+. ...+.++|++|+|||++|..++..+.. .... +..++.. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c-~~~~----~~~Cg~C----~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC-TDPD----EPGCGEC----RA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-CCCC----CCCCCCC----HH
Confidence 457899999999999997653 467889999999999999999887621 1100 0001100 01
Q ss_pred HHHHHHHhc----cCCCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE-
Q 043737 132 QGSIAKKIN----LFNESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF- 199 (371)
Q Consensus 132 ~~~l~~~l~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili- 199 (371)
...+...-. ...+.......++ ++.+.+.. .+++-++|||+++.... .+.+...+. ....++.+|+
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-ep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-EPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-cCCCCCeEEEE
Confidence 111110000 0000001111122 11222222 24555899999986532 233333343 3334555555
Q ss_pred ecCchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 200 TARELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 200 TsR~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
|+....+... .+....+.+.+++.++..+++.+..+ .+ .+.+..+++.++|.|...
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHH
Confidence 4444444322 34457899999999999999875432 11 344788999999998643
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=6.6e-08 Score=94.60 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
-..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+......-. ...+-.+... ...+.+...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhcC
Confidence 35689999999999999987654 47889999999999999999988721110000 0000001110 111112111
Q ss_pred hccCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE-ecCchHHH
Q 043737 139 INLFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF-TARELEVC 207 (371)
Q Consensus 139 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili-TsR~~~~~ 207 (371)
..... ........++ ++.+.+.+ .+++-++|+|+++.... .+.+...+. ....++.+|+ |+....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhh
Confidence 10000 0001111222 11222222 23455899999976532 444444444 3334555554 54444333
Q ss_pred hh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 208 GQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 208 ~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
.. .+....+++.+++.++....+.+.+.......+ .+.+..|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 244568999999999999999988754442222 3558889999999987554444
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.83 E-value=1.4e-07 Score=79.52 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=92.6
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCC-------------------CCCCeEEEEEeCC-cCCHHHH
Q 043737 73 RVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTP-------------------NDFDFVIWVVASK-DLQLEQI 131 (371)
Q Consensus 73 ~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~~-~~~~~~~ 131 (371)
.|.+.+.+++. ..+.++|+.|+|||++|..++..+.... .+.+ ..++.... ..+. +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCH-HH
Confidence 45556655554 6789999999999999999988872110 1111 12222111 1111 11
Q ss_pred HHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCch-HHHh
Q 043737 132 QGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTAREL-EVCG 208 (371)
Q Consensus 132 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~~-~~~~ 208 (371)
.+++...+.... ..+.+-++|+||++.... .+.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~~------------------~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRTP------------------QESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccCc------------------ccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 112222221100 124556999999986532 444544444 334455566555442 2222
Q ss_pred h-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 209 Q-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 209 ~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
. .+....+.+.+++.++..+++.+. + .+ .+.+..|++.++|.|.
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCcc
Confidence 1 234568999999999999999887 1 11 3558999999999885
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.8e-07 Score=78.63 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=137.5
Q ss_pred CCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
-..|||.++..++|.=++.. +..--+.++||+|.||||||.-+++.+ ...+ -+..+....-..-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~----k~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNL----KITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCe----EecccccccChhhHHHH
Confidence 36699999888887655542 345689999999999999999999998 2221 11111100001111122
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc---------ccccccccC-----------CCCCCCc
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD---------LSQVGLPVP-----------CRTSASN 195 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---------~~~~~~~l~-----------~~~~~~~ 195 (371)
+..+ ..+. +|.+|+++.... .+.+..-+. ....+-+
T Consensus 98 Lt~L-----------------------e~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 98 LTNL-----------------------EEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred HhcC-----------------------CcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 2222 2222 777888875421 121111000 0111222
Q ss_pred EEEEecCchHHHhhc--cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCC
Q 043737 196 KTVFTARELEVCGQM--EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASK 273 (371)
Q Consensus 196 ~iliTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 273 (371)
.|=-|||.-.+.+-+ .-+-+.+++-.+.+|-.+.+.+.+.......+ ++.+.+|++...|-|.-..-+.+.++.-
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVRDF 230 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 233588875543322 22345688889999999999888755443333 4459999999999998766665555421
Q ss_pred ------C--ChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcC
Q 043737 274 ------K--TPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEG 345 (371)
Q Consensus 274 ------~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g 345 (371)
. +..--...+..|.-....+...+..+..++...|..=|- ....+-..++. +..=-.+.+-=+.+.+|
T Consensus 231 a~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPV-Gl~tia~~lge---~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 231 AQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPV-GLDTIAAALGE---DRDTIEDVIEPYLIQQG 306 (332)
T ss_pred HHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCc-cHHHHHHHhcC---chhHHHHHHhHHHHHhc
Confidence 1 222333445555544455555555666666666655544 44444322222 21111233333555667
Q ss_pred CcccC
Q 043737 346 FLDEY 350 (371)
Q Consensus 346 ~~~~~ 350 (371)
|+...
T Consensus 307 fi~RT 311 (332)
T COG2255 307 FIQRT 311 (332)
T ss_pred hhhhC
Confidence 77544
No 69
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.5e-07 Score=87.90 Aligned_cols=180 Identities=14% Similarity=0.199 Sum_probs=105.5
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCC-----CCCCCe-EEEEEeCCcCCHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHT-----PNDFDF-VIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~ 134 (371)
..++|.+..++.+.+++.++.. +.+.++|++|+|||++|..+++..... ...|.. ++-++.....+. +....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHH
Confidence 5689999999999999977554 588899999999999999998886211 011211 111111111111 11222
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec-CchHHHh-hc
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA-RELEVCG-QM 210 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs-R~~~~~~-~~ 210 (371)
+...+.... ..+++-++++|+++.... ++.+...+. ....++.+|+++ ....+.. ..
T Consensus 96 l~~~~~~~p------------------~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIPP------------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhcc------------------ccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHH
Confidence 222221100 123455899999975432 333333333 223344455444 3333221 12
Q ss_pred cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 211 EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 211 ~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
+....+++.+++.++....+...+...+...+ .+.+..+++.++|.+..+.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDAL 207 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHH
Confidence 34467899999999999999887754442222 4568889999999766443
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.81 E-value=6e-08 Score=92.29 Aligned_cols=170 Identities=10% Similarity=0.080 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|+.|+|||+|++.+++.+.. ......+++++ ..++...+...+... ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 356899999999999999999987621 12223455553 346666666665421 01233444444
Q ss_pred CCCceEEEEeCCCCcc----cccccccccCCCCCCCcEEEEecCchH---------HHhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWELV----DLSQVGLPVPCRTSASNKTVFTARELE---------VCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
.+ .-+||+||++... ..+.+...+......+..||+||...+ +...+..+-.+.+.+++.++-.++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 3488999997442 123333333322334557888876532 233345566789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+.+...... ..-.++.+..|++.++|.|..+.-+...+
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99988643321 12346779999999999998887776544
No 71
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=2.3e-07 Score=91.05 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=108.5
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-------------------CeEEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDF-------------------DFVIWVV 121 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-------------------~~~~wv~ 121 (371)
..++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++.+.. .... ..++.++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 5689999999999999877654 56789999999999999999888621 1110 0011111
Q ss_pred eCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEE-
Q 043737 122 ASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTV- 198 (371)
Q Consensus 122 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~il- 198 (371)
......+++ .+++...+.... ..++.-++|||+++.... .+.+...+. ....++.+|
T Consensus 95 ~~s~~~v~~-ir~l~~~~~~~p------------------~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl 154 (576)
T PRK14965 95 GASNTGVDD-IRELRENVKYLP------------------SRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIF 154 (576)
T ss_pred ccCccCHHH-HHHHHHHHHhcc------------------ccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEE
Confidence 111111111 111222111100 123445899999976532 334444443 333455554
Q ss_pred EecCchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-HHHHHHHH
Q 043737 199 FTARELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP-LALITVGR 268 (371)
Q Consensus 199 iTsR~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~a~ 268 (371)
+|+....+... .+....+++.+++.++....+...+...+...+ .+.+..|++.++|.. .++..+-.
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555544432 345567899999999999998887654432222 345788999999976 45555433
No 72
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.8e-07 Score=91.79 Aligned_cols=194 Identities=11% Similarity=0.092 Sum_probs=108.6
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE-eCCcCCHHHHHHHHHHHh
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV-ASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~l~~~l 139 (371)
..++|.+..+..|.+++.++.. ..+.++|+.|+||||+|..+++.+. -....+.-.|.. ....++.-.....+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 5689999999999999877654 4588999999999999999998872 111111001111 000111111111111110
Q ss_pred ccCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEE-EEecCchHHHh
Q 043737 140 NLFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKT-VFTARELEVCG 208 (371)
Q Consensus 140 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~i-liTsR~~~~~~ 208 (371)
.... ........++.. .+.+.+ .+.+-++|+||++.... .+.+...+. .....+.+ ++|++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhH
Confidence 0000 000111122222 222222 23455899999986533 444444444 33334444 44554444432
Q ss_pred -hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 209 -QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 209 -~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
..+....+++.+++.++....+.+.+....... ..+.++.|++.++|...
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 235567899999999999999988765433222 24458899999999665
No 73
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.6e-07 Score=88.62 Aligned_cols=183 Identities=11% Similarity=0.104 Sum_probs=106.8
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCC--CC----------------CCCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHT--PN----------------DFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~----------------~f~~~~wv~~ 122 (371)
..++|.+..+..|.+++..+.. ..+.++|+.|+||||+|+.++..+... .. .+..+++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 5679999999999999977554 456789999999999999998876210 00 0111222221
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEE-E
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTV-F 199 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-i 199 (371)
+....... .+.+...+... -..+++-++|+|+++... ..+.+...+. ....++.+| .
T Consensus 96 as~~gvd~-ir~I~~~~~~~------------------P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~Il~ 155 (486)
T PRK14953 96 ASNRGIDD-IRALRDAVSYT------------------PIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIFILC 155 (486)
T ss_pred ccCCCHHH-HHHHHHHHHhC------------------cccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEE
Confidence 11111111 11111111100 012455699999997552 2333433444 223344444 4
Q ss_pred ecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 200 TARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 200 TsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
|++...+.. ..+....+.+.+++.++....+...+...+...+ .+.+..|+..++|.+..+....
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555443332 2234567899999999999999887754442222 3457888999999876544444
No 74
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.7e-07 Score=92.43 Aligned_cols=190 Identities=12% Similarity=0.141 Sum_probs=107.0
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH-Hh
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK-KI 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~-~l 139 (371)
..++|.+..++.|..++..++ ...+.++|+.|+|||++|+.++..+.. ....+ .+-.+.. +..... ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~--~~~pC~~-------C~~~~~~~~ 87 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD--LLEPCQE-------CIENVNNSL 87 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC--CCCchhH-------HHHhhcCCC
Confidence 568999999999999997765 456789999999999999999888621 11000 0000000 000000 00
Q ss_pred ccC-CCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcE-EEEecCchHHHh-h
Q 043737 140 NLF-NESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNK-TVFTARELEVCG-Q 209 (371)
Q Consensus 140 ~~~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~-iliTsR~~~~~~-~ 209 (371)
... .........++ ++.+.+.+ .+++-++|+|+++... .+..+...+. .....+. |++|+....+.. .
T Consensus 88 Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 88 DIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred cEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhHHH
Confidence 000 00000011111 22222222 2455699999997553 3444444443 2333444 445655554432 2
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHH
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITV 266 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 266 (371)
.+....+++.+++.++....+...+...+...+ .+.+..|++.++|.+. |+..+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 345578999999999999999887644332222 3457889999999765 44443
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.75 E-value=1.9e-07 Score=87.13 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=98.5
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..+.|++..+++|.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3578999999999887642 124569999999999999999999987 3332 22111
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc----------------ccccccccC-CC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD----------------LSQVGLPVP-CR 190 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~ 190 (371)
..+..... + ........+.+.. ...+.+|+||+++.... +..+...+. ..
T Consensus 190 ~~l~~~~~---g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKYI---G---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHhh---h---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 11111110 0 0111222233222 34678999999975311 111111111 01
Q ss_pred CCCCcEEEEecCchHH-----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 191 TSASNKTVFTARELEV-----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 191 ~~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
...+..||.||..... .+...-...+.++..+.++..++|...........+-. ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 2346677777765322 11111235689999999999999998875543222222 567777887754
No 76
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.7e-07 Score=90.09 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=111.9
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+. ...... ....++.-..+..+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCC
Confidence 35689999999999998876554 5678999999999999999998872 111000 000111122333333221
Q ss_pred ccCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEec-CchHHHh
Q 043737 140 NLFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTA-RELEVCG 208 (371)
Q Consensus 140 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTs-R~~~~~~ 208 (371)
.... ........++ ++.+.+.+ .+++-++|||+++... ..+.+...+. ....++.+|+++ ....+..
T Consensus 88 ~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 88 AVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhH
Confidence 1100 0001111222 12222222 1345699999997553 3444444443 333445555544 3333322
Q ss_pred -hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 209 -QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 209 -~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
..+....+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+.....
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234567889999999999999887755432222 35588999999998865554443
No 77
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=7e-07 Score=87.07 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=108.4
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|-+..++.|..++.++.. ..+.++|+.|+||||+|+.+++.+.. ...... ..++...+ ...+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C~~----C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGECSS----CKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccchH----HHHHHcCCC
Confidence 5689999999999999987654 46889999999999999999988721 111000 00000000 011111000
Q ss_pred cC---CCCCCcCCHHHHHHHHHHH-----hCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec-CchHHHhh
Q 043737 141 LF---NESWNSRSLQEKSQDIVKN-----MSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA-RELEVCGQ 209 (371)
Q Consensus 141 ~~---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs-R~~~~~~~ 209 (371)
.. .........++.. .+.+. ..+++-++|+|+++.... .+.+...+. .....+.+|++| ....+...
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHH
Confidence 00 0000011122221 12111 124556899999986532 444444444 333455555544 43333322
Q ss_pred -ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 210 -MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 210 -~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.+....+++.+++.++..+.+...+....... .++.+..|++.++|.+..+...
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 34456789999999999999988775433222 2455888999999988544433
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.74 E-value=1.9e-07 Score=95.45 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=101.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--C-CCCe-EEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--N-DFDF-VIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~-~f~~-~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||++++.+++..|.......+.++|++|+|||++|..+++++.... . -.+. ++.++++.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~----------- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ----------- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-----------
Confidence 56899999999999998777667888999999999999999999872110 0 1112 2223222100
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc-------ccccccccCCCCCCCcEEEEecCchHHH-
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD-------LSQVGLPVPCRTSASNKTVFTARELEVC- 207 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~~~~~~l~~~~~~~~~iliTsR~~~~~- 207 (371)
.... .....+..++.+...+. +++++|++|+++.... .+.-....+.......++|-+|....+.
T Consensus 256 ----ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 256 ----AGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKK 330 (852)
T ss_pred ----cccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhh
Confidence 0000 11112222223333222 4689999999975421 1110012231122334555555543221
Q ss_pred ------hhccCCCceeecCCChHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHcCCCc
Q 043737 208 ------GQMEAHKSFKVERLGYEDAWKLFEEKVGKEIL-DSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 208 ------~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 260 (371)
......+.+.+++++.+++.++++........ ..-.-..+....+++.+.++.
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 11124468999999999999997544321110 011122455677777776644
No 79
>PRK06620 hypothetical protein; Validated
Probab=98.73 E-value=1.8e-07 Score=80.18 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
+.+.|+|++|+|||+|++.+++.. .. .++.... . .. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~~~--~----~~--------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKDIF--F----NE--------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcchhh--h----ch--------------------------hHH-
Confidence 679999999999999999887765 11 1211000 0 00 001
Q ss_pred CCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchH-------HHhhccCCCceeecCCChHHHHHHHHHHhCC
Q 043737 164 NKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELE-------VCGQMEAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~-------~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
...-++++||++...+. .+...+......|..+|+|++..+ +.+.+..+.++++++++.++-..++.+.+..
T Consensus 84 ~~~d~lliDdi~~~~~~-~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQEP-ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchHH-HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 12247899999854321 222222212245668899887532 2334455668999999999999898887753
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 237 EILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
.....+ ++.++.|++.+.|.-..+.-+...+
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 332232 4568888888887665555444433
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.2e-06 Score=78.83 Aligned_cols=175 Identities=12% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
+...+||+.++..+..++.. +..+.+.|.|.+|.|||.+...++.+.. ....-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHH
Confidence 57799999999999999865 4567899999999999999999999873 122223567888776667777887777
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHhCC--CceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCchHH------
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNMSN--KKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARELEV------ 206 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~~~~------ 206 (371)
..+..... ......+....+.++..+ ..+|+|+|++|.... ...+...+.|..-.++++++..-...+
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 77622111 111124555666666654 358999999975422 222333333445556666654332211
Q ss_pred Hhhc-----cCCCceeecCCChHHHHHHHHHHhCCCC
Q 043737 207 CGQM-----EAHKSFKVERLGYEDAWKLFEEKVGKEI 238 (371)
Q Consensus 207 ~~~~-----~~~~~~~l~~L~~~ea~~ll~~~~~~~~ 238 (371)
...+ -....+..+|.+.++..++|..++....
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 1111 1234678899999999999999986543
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.71 E-value=4.5e-07 Score=85.03 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=97.4
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
+.+.|++..+++|.+.+.. ...+.|.|+|++|+|||++|+.+++.. ... |+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3467999999999887632 235679999999999999999999887 222 222211
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc------------c-ccccccc---C-CC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD------------L-SQVGLPV---P-CR 190 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~------------~-~~~~~~l---~-~~ 190 (371)
.++... . .. ........+.... ...+.+|+||+++.... . ..+...+ . ..
T Consensus 199 ~~l~~~----~-------~g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQK----F-------IG-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhHh----h-------cc-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111111 0 00 1112222333322 34678999999975310 0 0111111 1 01
Q ss_pred CCCCcEEEEecCchHH-Hhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043737 191 TSASNKTVFTARELEV-CGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL 259 (371)
Q Consensus 191 ~~~~~~iliTsR~~~~-~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 259 (371)
...+..||.||..... ...+ .-...+.+++.+.++-.++|+.+..........+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2235566666654322 1111 1235689999999999999998876544332223 56677777775
No 82
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=5.4e-07 Score=86.60 Aligned_cols=183 Identities=12% Similarity=0.159 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhccCCCC-C-----------------CCeEEEEEe
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMG-IVGLYGMGEVGKTTLLTQINKKFLHTPN-D-----------------FDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~-----------------f~~~~wv~~ 122 (371)
..++|-+...+.|..++..+... .+.++|+.|+||||+|+.+++.+-.... . ...++.++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 56899999999999999776554 6689999999999999999888621110 0 011222221
Q ss_pred CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEe
Q 043737 123 SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFT 200 (371)
Q Consensus 123 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliT 200 (371)
.....++++. ++........ ..+++-++|+|+++.... .+.+...+. ....++.+|++
T Consensus 94 as~~gId~IR-elie~~~~~P------------------~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ 153 (535)
T PRK08451 94 ASNRGIDDIR-ELIEQTKYKP------------------SMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILA 153 (535)
T ss_pred ccccCHHHHH-HHHHHHhhCc------------------ccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEE
Confidence 1111122211 1111111000 013455999999986532 334444443 33445666655
Q ss_pred cCch-HHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 201 AREL-EVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 201 sR~~-~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
|.+. .+. ...+....+++.+++.++....+...+...+... ..+.+..|++.++|.+.-+....
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 5442 222 1223456889999999999999988775544222 24568899999999886554443
No 83
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=4.9e-07 Score=86.14 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCC--------------------CCCeEEE
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPN--------------------DFDFVIW 119 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--------------------~f~~~~w 119 (371)
-..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|..+++.+..... +++ +++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 36689999999999999977654 56889999999999999999888621100 111 111
Q ss_pred EEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEE
Q 043737 120 VVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 120 v~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~i 197 (371)
+........++ .+++...+.. .-..+.+-++|+|+++... ..+.+...+. ....++.+
T Consensus 95 i~g~~~~gid~-ir~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~ 154 (451)
T PRK06305 95 IDGASHRGIED-IRQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKF 154 (451)
T ss_pred eeccccCCHHH-HHHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceE
Confidence 11111111111 1111111110 0012456689999997553 2333433443 33345555
Q ss_pred EEec-CchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 198 VFTA-RELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 198 liTs-R~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
|++| +...+.. ..+....+++.+++.++....+...+...+... ..+.+..|++.++|.+.-+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDA 219 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 5554 3333322 223456789999999999999988765433222 2455889999999976533
No 84
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.70 E-value=2.2e-06 Score=75.71 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=118.7
Q ss_pred Cccccchh---HHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---CeEEEEEeCCcCCHHHHH
Q 043737 62 PTVVGLQS---TFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF---DFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 62 ~~~vGR~~---~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 132 (371)
+.++|-.. .+++|.+.+.. ...+.+.|+|.+|+|||++++++.+.+....+.- --|+.+.....++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 55677543 34444444433 3557899999999999999999998874222111 147778888899999999
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHHHHHhCC-CceEEEEeCCCCccc---------ccccccccCCCCCCCcEEEEecC
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDIVKNMSN-KKFVLLLDHIWELVD---------LSQVGLPVPCRTSASNKTVFTAR 202 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~~~~~l~~~~~~~~~iliTsR 202 (371)
..|+.+++.+... ..+...........++. +.-+||||++++... ++.+. .+. ..-.=+-|.+-|+
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLG-NELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHh-hccCCCeEEeccH
Confidence 9999999987653 34445555555555554 344999999987421 11111 111 1112224445454
Q ss_pred chHHH-hh----ccCCCceeecCCCh-HHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 203 ELEVC-GQ----MEAHKSFKVERLGY-EDAWKLFEEKVGKEI--LDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 203 ~~~~~-~~----~~~~~~~~l~~L~~-~ea~~ll~~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.-..+ .. .+...++.++.... ++...|+........ ..+.-...+++..|+..++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 32111 00 02245666766664 344455443322111 1223345678999999999987555444
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.65 E-value=8.2e-07 Score=84.09 Aligned_cols=163 Identities=19% Similarity=0.193 Sum_probs=98.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|++|+|||+|++.+++.... ...-..+++++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 357899999999999999999998731 111235666643 34444555544311 11 2233333
Q ss_pred CCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCchH---------HHhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTARELE---------VCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
.+ .-+|+|||++.... .+.+...+......+..+++||.... +.+.+..+..+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 33899999975322 11222222211223556788776421 222333445789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
+.+.+.......+ ++.+..|++.+.|....+.-+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 9998865443333 4668999999999877655443
No 86
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.65 E-value=1.9e-06 Score=73.44 Aligned_cols=195 Identities=13% Similarity=0.152 Sum_probs=114.3
Q ss_pred hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe-CCcCCHHHHHHHHHHHhccCCCCCC
Q 043737 69 STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA-SKDLQLEQIQGSIAKKINLFNESWN 147 (371)
Q Consensus 69 ~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 147 (371)
+.+..+...+ .++.+++.|+|.-|+|||.+.+.+...+ .+. .... +.. .+..+...+...+...+........
T Consensus 38 e~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~---~~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~ 111 (269)
T COG3267 38 EALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASL---NED-QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNV 111 (269)
T ss_pred HHHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhc---CCC-ceEE-EEecCcchhHHHHHHHHHHHhccCccchh
Confidence 3344444443 3456799999999999999999665555 111 2222 333 3445677888888888876322111
Q ss_pred cCCHHHHHHHHHHHh-CCCc-eEEEEeCCCCc--ccccccccccCC--CCCCCcEEEEecCchHH-------Hhhc-cCC
Q 043737 148 SRSLQEKSQDIVKNM-SNKK-FVLLLDHIWEL--VDLSQVGLPVPC--RTSASNKTVFTARELEV-------CGQM-EAH 213 (371)
Q Consensus 148 ~~~~~~~~~~l~~~l-~~~~-~LlVlDdv~~~--~~~~~~~~~l~~--~~~~~~~iliTsR~~~~-------~~~~-~~~ 213 (371)
....+...+.+.... ++++ ..+++|+.++. ..++.+..+... .....-+|+.....+-. .... ...
T Consensus 112 ~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~ 191 (269)
T COG3267 112 NAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI 191 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE
Confidence 222333344444444 3455 89999999754 333333222221 11122234443322110 1111 111
Q ss_pred Cc-eeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Q 043737 214 KS-FKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRA 269 (371)
Q Consensus 214 ~~-~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 269 (371)
.. |++.|++.++...+++.++.....+.+--..+....|.....|.|.+|+.++..
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 23 899999999999999998866543343344567889999999999999988743
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.65 E-value=1.2e-07 Score=82.48 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~ 136 (371)
|..-..++|-+..++-|.+.+.....+....|||+|.|||+-|..++..+ ...+-|. +++=.+++......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki- 109 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI- 109 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-
Confidence 33446789999999999999988778899999999999999999999987 2334444 44444444433222000000
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHh--CCCc-eEEEEeCCCCc--ccccccccccCCCCCCCcEE-EEecCchHHHh-h
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNM--SNKK-FVLLLDHIWEL--VDLSQVGLPVPCRTSASNKT-VFTARELEVCG-Q 209 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~i-liTsR~~~~~~-~ 209 (371)
.+............ ...+ -++|||+++.+ +.|..+...+. .....++. +||+--..+.. .
T Consensus 110 ------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 110 ------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHH
Confidence 00000000000000 0122 38999999866 44666655555 33444554 45543332211 1
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
.+...-+..++|..++...-++..+...+...+. +..+.|++.++|--.
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHH
Confidence 1234568899999999999999888766644443 348899999998543
No 88
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=9.5e-07 Score=87.13 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|.+..++.|..++..+. ...+.++|+.|+||||+|+.+++.+.. . ....... ..+..-..++.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~-~~~~~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC-L-NSDKPTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC-C-CcCCCCC----CCCcccHHHHHHhcCCC
Confidence 568999999999999997754 367889999999999999999998721 1 1100000 11111122333322211
Q ss_pred cCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEE-EecCchHHHhh
Q 043737 141 LFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTV-FTARELEVCGQ 209 (371)
Q Consensus 141 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~il-iTsR~~~~~~~ 209 (371)
... ........++ ++.+.+.+ .+++-++|||+++... ..+.+...+. .....+.+| +|+....+...
T Consensus 90 ~D~~ei~~~~~~~vd~-IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDN-IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHH-HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 100 0001111211 12222222 2345599999998653 3444444444 223344444 45544333322
Q ss_pred -ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 210 -MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 210 -~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
.+....+++.+++.++....+...+.......+ .+.+..|++.++|.+..+....
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 234567888999999999888877654332222 3458899999999876544433
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=7.8e-07 Score=87.74 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=108.6
Q ss_pred CccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCC--------------------CCCCCeEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHT--------------------PNDFDFVIWV 120 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~~f~~~~wv 120 (371)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.++..+... ..+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 5689999999999999987654 458899999999999999988876210 11222 1222
Q ss_pred EeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEE
Q 043737 121 VASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTV 198 (371)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~il 198 (371)
+.......+++ +.+..++.... ..+++-++|+|+++.... .+.+...+. ....++.+|
T Consensus 96 d~~~~~~vd~I-r~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDI-RNLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFI 155 (614)
T ss_pred cccccCCHHHH-HHHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 22211112111 12222221110 113445899999986533 444544444 333445544
Q ss_pred E-ecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 199 F-TARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 199 i-TsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
+ |+....+.. ..+....+++.+++.++....+...+...+...+ .+.+..|+..++|...-+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4 555444433 2345678999999999999999887755442222 345788999999976543
No 90
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.64 E-value=7.2e-06 Score=75.60 Aligned_cols=202 Identities=13% Similarity=0.184 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCCeEEEEEeCC---cCCHHHHHHHHHHHhccC
Q 043737 67 LQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLL-TQINKKFLHTPNDFDFVIWVVASK---DLQLEQIQGSIAKKINLF 142 (371)
Q Consensus 67 R~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~l~~~l~~~ 142 (371)
|.+.+++|..||.+.....|+|+||-|+||+.|+ .++..+. ..++.+++.+ ..+...+...++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 6678899999999888889999999999999999 7776664 2277887653 234566677777776541
Q ss_pred ---------------------C-CCCCcCCHHHHHHHHHHHh------------------------------CCCceEEE
Q 043737 143 ---------------------N-ESWNSRSLQEKSQDIVKNM------------------------------SNKKFVLL 170 (371)
Q Consensus 143 ---------------------~-~~~~~~~~~~~~~~l~~~l------------------------------~~~~~LlV 170 (371)
+ ..--+.+.+..+..+.+.. ...+-++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 0 0001223333222222110 01256999
Q ss_pred EeCCCCcccc-----cc---cccccCCCCCCCcEEEEecCchHH----Hhhc--cCCCceeecCCChHHHHHHHHHHhCC
Q 043737 171 LDHIWELVDL-----SQ---VGLPVPCRTSASNKTVFTARELEV----CGQM--EAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 171 lDdv~~~~~~-----~~---~~~~l~~~~~~~~~iliTsR~~~~----~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
|||+.....- +. ....+ ..++-.+||++|-+... ...+ ...+.+.|...+++.|.+++..++..
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASL--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHH--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 9999643221 11 11222 23344567777766433 2222 34567899999999999999999865
Q ss_pred CCCC------------CC-----CCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChh
Q 043737 237 EILD------------SH-----PDIPELAETVAKECGGLPLALITVGRAMASKKTPR 277 (371)
Q Consensus 237 ~~~~------------~~-----~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~ 277 (371)
.... .+ ....+-.+..+..+||--.-|..+++.++...++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 3110 00 12344567788889999999999999998765543
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.64 E-value=2.7e-07 Score=93.51 Aligned_cols=157 Identities=15% Similarity=0.229 Sum_probs=90.6
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CCC-CeEEE-EEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--NDF-DFVIW-VVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-~~~~w-v~~~~~~~~~~~~~~l~~ 137 (371)
+.++||++++.++...|.......+.++|++|+|||++|..++++..... ..+ +..+| ++.+ . +..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~----l~a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------S----LLA 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------H----Hhh
Confidence 56899999999999998776667788999999999999999999873211 111 22233 2211 1 111
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc--------ccccccccCCCCCCCcEEEEecCchHHH-
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD--------LSQVGLPVPCRTSASNKTVFTARELEVC- 207 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~~~~~~iliTsR~~~~~- 207 (371)
... .....+..++.+.+.+. .++.+|++|+++.... .+.-....+.......++|-+|....+.
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHH
Confidence 000 11223334444444443 4578999999974321 1111111121112233444444432210
Q ss_pred ------hhccCCCceeecCCChHHHHHHHHHHh
Q 043737 208 ------GQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 208 ------~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
......+.+.+++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111234679999999999999998654
No 92
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.61 E-value=3.8e-07 Score=87.49 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|++|+|||+|++.+++... .......+++++.. ++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35799999999999999999999973 11112346666443 344444444421 111 2233333
Q ss_pred CCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCchH---------HHhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTARELE---------VCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
++ .-+|+|||++.... .+.+...+......+..+++||.... +.+.+..+..+++++.+.++-..+
T Consensus 210 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 RS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 32 44899999974321 12222212111223456777776532 223344556799999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHc------CC-CChhHHHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMA------SK-KTPREWEHAIEVL 286 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~------~~-~~~~~~~~~l~~l 286 (371)
+++.+....... .++.+..|++.+.|....+.-+...|. +. -+....+..+..+
T Consensus 289 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 289 LKKKAEEEGIDL---PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999886433222 345689999999998775544433321 11 2445555555544
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.5e-06 Score=85.02 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=106.0
Q ss_pred CCccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-..++|.+..++.|.+++..++ ...+.++|+.|+|||++|+.++..+. .....+.. .++. -.....+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~~---pC~~----C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDGE---PCNE----CEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCC---CCCc----cHHHHHHhcCC
Confidence 3678999999999999997754 45677899999999999999988862 11110000 0000 01111111111
Q ss_pred ccCC---CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEE-EecCchHHHh
Q 043737 140 NLFN---ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTV-FTARELEVCG 208 (371)
Q Consensus 140 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~il-iTsR~~~~~~ 208 (371)
.... ........+ .+..+.... .++.-++|+|+++.... ...+...+. ....++.+| .||....+..
T Consensus 87 ~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 87 LMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcH
Confidence 0000 000011111 122222221 24556999999986532 333433333 233344444 4554443332
Q ss_pred h-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 209 Q-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 209 ~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
. .+....+++.+++.++....+...+...+...+ .+.+..|++.++|.+..+
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 234567889999999999999887754432222 345788888999877543
No 94
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.61 E-value=4.3e-07 Score=86.41 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|++|+|||+|++.+++... ....-..++|++. .++...+...+.. ... ..+.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~----~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKL----NEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccH----HHHHHHH
Confidence 35699999999999999999999873 1111235677753 4556666555531 111 2233333
Q ss_pred CCCceEEEEeCCCCccc---c-cccccccCCCCCCCcEEEEecCc-hH--------HHhhccCCCceeecCCChHHHHHH
Q 043737 163 SNKKFVLLLDHIWELVD---L-SQVGLPVPCRTSASNKTVFTARE-LE--------VCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~~~iliTsR~-~~--------~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
....-+|++||++.... . +.+...+......+..+|+||.. .. +.+.+..+..+.+++.+.+.-..+
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 33455899999974321 1 12212221112234578888753 21 122234456789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 230 FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
+++.+.......+ ++.+..|++.+.|....|.-+.
T Consensus 272 L~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 272 ARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHH
Confidence 9988764432332 4568899999888766555443
No 95
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.60 E-value=1.8e-07 Score=81.70 Aligned_cols=95 Identities=20% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCC-CcC---CHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD--LQLEQIQGSIAKKINLFNESW-NSR---SLQEK 154 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~l~~~l~~~~~~~-~~~---~~~~~ 154 (371)
.....++|.|++|+|||||++++++... ..+|+.++|+.+... .++.++++.+...+-...-+. ... .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999983 338899999987665 688999999843332221110 000 11111
Q ss_pred HHHHHHH-hCCCceEEEEeCCCCc
Q 043737 155 SQDIVKN-MSNKKFVLLLDHIWEL 177 (371)
Q Consensus 155 ~~~l~~~-l~~~~~LlVlDdv~~~ 177 (371)
....... -.++++++++|++.+.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222211 2478999999999654
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.59 E-value=1.5e-06 Score=85.92 Aligned_cols=203 Identities=12% Similarity=0.010 Sum_probs=104.2
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---CeEEEEEeCCc---CCHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF---DFVIWVVASKD---LQLEQIQGS 134 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 134 (371)
-+.++|++..+..+.+.+.......+.|+|++|+||||||+.+.+... ....+ ...-|+.++.. .+...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~-~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK-KLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh-hccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 456899999999998888656667899999999999999999877652 11111 12234433221 122222111
Q ss_pred HH---------------HHhccCCC----------------CCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc--cccc
Q 043737 135 IA---------------KKINLFNE----------------SWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL--VDLS 181 (371)
Q Consensus 135 l~---------------~~l~~~~~----------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~ 181 (371)
++ ...+.... ..... .......+...+..+++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11110000 00000 011233334444444444443333221 1122
Q ss_pred ccccccCCCCCCCcEEEE--ecCchHH-Hhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC
Q 043737 182 QVGLPVPCRTSASNKTVF--TARELEV-CGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECG 257 (371)
Q Consensus 182 ~~~~~l~~~~~~~~~ili--TsR~~~~-~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~ 257 (371)
.+...+. ...+...++| ||++... ... .+....+.+.+++.++...++.+.+....... ..+..+.|.+.+.
T Consensus 311 ~ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 311 YIKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCC
Confidence 2222222 2233334444 5554321 111 12234678999999999999999875432212 2345666666666
Q ss_pred CCcHHHHHHHHH
Q 043737 258 GLPLALITVGRA 269 (371)
Q Consensus 258 g~Plal~~~a~~ 269 (371)
.-+.++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 557777766544
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=2e-06 Score=83.51 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
..++|+|..|+|||.|+..+++... .......++|++. .++..++...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4689999999999999999999872 1112234566643 4455555444321 11 122333333
Q ss_pred CCceEEEEeCCCCccc---c-cccccccCCCCCCCcEEEEecCch---------HHHhhccCCCceeecCCChHHHHHHH
Q 043737 164 NKKFVLLLDHIWELVD---L-SQVGLPVPCRTSASNKTVFTAREL---------EVCGQMEAHKSFKVERLGYEDAWKLF 230 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ll 230 (371)
+- =+|||||++.... + +.+...+......+..|||||... .+.+.+...-.+.|.+.+.+.-..++
T Consensus 377 ~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 EM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred cC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 32 4899999974421 1 222222221223456788888763 23444556678999999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 231 EEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
.+.+.......+ ++.++.|++.+.+..-.|.-+..
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 998865543333 45688888888877665554443
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.54 E-value=9.4e-07 Score=83.92 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
..+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+.. .. ...++..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~-------~~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRS-------GE----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhc-------ch----HHHHHHHcc
Confidence 57899999999999999999998731 223455654 23444555555421 01 123444333
Q ss_pred CCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCch---------HHHhhccCCCceeecCCChHHHHHHH
Q 043737 164 NKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTAREL---------EVCGQMEAHKSFKVERLGYEDAWKLF 230 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ll 230 (371)
+ .-+|++||++.... .+.+...+......+..||+||... .+.+.+..+..+.+.+++.++-..++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 34889999975422 1222222211112355788877542 12333445578899999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 231 EEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
++.+.......+ ++.+..|+..+.+.-
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 988765442232 455777777777654
No 99
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=5.8e-06 Score=75.00 Aligned_cols=198 Identities=13% Similarity=0.112 Sum_probs=112.9
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCC------------CCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHT------------PNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------~~~f~~~~wv~~~~~~~~ 128 (371)
..++|.+...+.+...+.+++ .....++|+.|+||+++|..+++.+... ...++...|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 357999999999999998776 4789999999999999999998886311 111223344432100000
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-----CCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-----NKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA 201 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs 201 (371)
.......+...+...........++ ++.+.+.+. +++-++|+|+++.+.. .+.+...+. ......-|++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPGNGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCCCCeEEEEEC
Confidence 0000111112211111111222222 233443332 4556999999986633 333434443 223344455555
Q ss_pred CchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 202 RELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 202 R~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
....+... .+....+.+.+++.++..+.+........ .......++..++|.|.......
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHH
Confidence 55444332 35567899999999999999998753211 11114678899999997655433
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.53 E-value=1.1e-06 Score=80.34 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=85.1
Q ss_pred CCccccchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-..++|.+...+.+..++.++.. .++.++|++|+|||++|..+++.. ... +..++.+. .....+...+....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHH
Confidence 36689999999999999876554 566679999999999999998876 221 23444433 12221111111111
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc---ccccccccCCCCCCCcEEEEecCchHH-H-hhccCCC
Q 043737 140 NLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD---LSQVGLPVPCRTSASNKTVFTARELEV-C-GQMEAHK 214 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTsR~~~~-~-~~~~~~~ 214 (371)
.. . ...+.+-++|+|+++.... ...+...+. ....++.+|+||..... . ...+...
T Consensus 93 ~~-~-----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 93 ST-V-----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred Hh-h-----------------cccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhce
Confidence 00 0 0113455899999975511 122322233 33456788888765321 1 1112335
Q ss_pred ceeecCCChHHHHHHHHH
Q 043737 215 SFKVERLGYEDAWKLFEE 232 (371)
Q Consensus 215 ~~~l~~L~~~ea~~ll~~ 232 (371)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677878888887766543
No 101
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.51 E-value=2.5e-06 Score=76.56 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=106.7
Q ss_pred CCCccccchhHHHHHHHHHhcCC---ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEEQ---MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
+.+.|.+|+.++..+...+.+.. +..|.|+|.+|+|||.+.+++.+.. .- ..+|+++-...+...++..|+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHH
Confidence 45788999999999999987643 3466999999999999999999886 22 358999999999999999999
Q ss_pred HHhccCCCCC-CcC----CHHHHHHHHHH--HhC--CCceEEEEeCCCCccccccc-----ccccCCCCCCCcEEEEecC
Q 043737 137 KKINLFNESW-NSR----SLQEKSQDIVK--NMS--NKKFVLLLDHIWELVDLSQV-----GLPVPCRTSASNKTVFTAR 202 (371)
Q Consensus 137 ~~l~~~~~~~-~~~----~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~-----~~~l~~~~~~~~~iliTsR 202 (371)
.+.+....+. ... +..+.+..+.+ ... ++.++||+||++...+.+.. ........... .+|+++-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~ 156 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSA 156 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEec
Confidence 9986322211 111 11122333333 122 35799999999876554432 11111112223 3333333
Q ss_pred c---hHHHhhccCC--CceeecCCChHHHHHHHHHH
Q 043737 203 E---LEVCGQMEAH--KSFKVERLGYEDAWKLFEEK 233 (371)
Q Consensus 203 ~---~~~~~~~~~~--~~~~l~~L~~~ea~~ll~~~ 233 (371)
. .......+.. .++.++.-+.++...++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 2222222332 34677888899988888654
No 102
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.50 E-value=1.1e-06 Score=81.95 Aligned_cols=108 Identities=16% Similarity=0.068 Sum_probs=71.0
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+ .....+..+.|+.++...+..++...+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP---- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP---- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----
Confidence 4578889999999999854 4588889999999999999999987 34456778899999887776665532210
Q ss_pred CCCCCCcCCHHHHHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 142 FNESWNSRSLQEKSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
.... -....+...+.+.... ..++++||||+++..
T Consensus 248 ~~vg-y~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 NGVG-FRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCC-eEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000 0000111111222211 246899999999644
No 103
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.49 E-value=2.1e-06 Score=76.24 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=78.3
Q ss_pred ccccchhHHHHHHH---HHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCC
Q 043737 63 TVVGLQSTFDRVWR---CLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQ 127 (371)
Q Consensus 63 ~~vGR~~~~~~l~~---~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 127 (371)
.++|.+...++|.+ +..- .....+.++|++|+||||+|+.+++.+... .......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecH---
Confidence 47887766655543 2210 134578899999999999999998875211 1111111222221
Q ss_pred HHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc----------cccccccccCCCCCCCcEE
Q 043737 128 LEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV----------DLSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 128 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~~~i 197 (371)
.++. ... .... ......+.+... ..+|+||+++... .++.+...+. .......+
T Consensus 83 -~~l~----~~~-------~g~~-~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 83 -ADLV----GEY-------IGHT-AQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred -HHhh----hhh-------ccch-HHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 1111 110 0111 111122222222 3489999997532 1222222222 22233345
Q ss_pred EEecCchHH---Hh---h-ccC-CCceeecCCChHHHHHHHHHHhCCC
Q 043737 198 VFTARELEV---CG---Q-MEA-HKSFKVERLGYEDAWKLFEEKVGKE 237 (371)
Q Consensus 198 liTsR~~~~---~~---~-~~~-~~~~~l~~L~~~ea~~ll~~~~~~~ 237 (371)
++++..... .. . ... ...+.+++++.++-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 555443221 00 0 111 2458999999999999998887543
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.47 E-value=4.5e-06 Score=74.86 Aligned_cols=132 Identities=10% Similarity=0.078 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCC
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSN 164 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 164 (371)
.+.++|++|+|||++|+.+++.+. .......--++.++. .++ ...+.. .+... ...+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~-~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPK-TKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH----HHH----hHhhcc-------cchHH-HHHHHHHc--
Confidence 688999999999999988877662 111111112333331 122 222111 11111 22222222
Q ss_pred CceEEEEeCCCCcc------c-----ccccccccCCCCCCCcEEEEecCchHHHhhc--------cCCCceeecCCChHH
Q 043737 165 KKFVLLLDHIWELV------D-----LSQVGLPVPCRTSASNKTVFTARELEVCGQM--------EAHKSFKVERLGYED 225 (371)
Q Consensus 165 ~~~LlVlDdv~~~~------~-----~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~--------~~~~~~~l~~L~~~e 225 (371)
..-+|+||+++... . .+.+...+. ....+.+||+++......... .-...+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 23589999997331 1 122222232 233455666665443221111 113568999999999
Q ss_pred HHHHHHHHhCC
Q 043737 226 AWKLFEEKVGK 236 (371)
Q Consensus 226 a~~ll~~~~~~ 236 (371)
-.+++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 105
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.45 E-value=8.1e-06 Score=76.40 Aligned_cols=170 Identities=13% Similarity=0.162 Sum_probs=94.6
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|-+...++|.+.+.- ...+-+.|+|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~----s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG----S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467888888887776531 245789999999999999999999886 3332 11111 1
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHH-HHhCCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIV-KNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.+. ... .... ...+..+. ......+.+|+||+++.... +..+...+. ...
T Consensus 214 ~l~----~k~-------~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 214 EFV----QKY-------LGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHh-------cchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 111 0111 11222222 22345789999999874310 001111111 012
Q ss_pred CCCcEEEEecCchHHH-hh-c---cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTARELEVC-GQ-M---EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~~~~~-~~-~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||+||...... .. . .-...+.++..+.++-.++|+..........+-+ ..++++.+.|+.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 3456677766653321 11 1 2234588888889988888887765444333333 456667776653
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.43 E-value=1.3e-06 Score=89.76 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=90.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CC-CCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--ND-FDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~-f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
..++||+++++++.+.|.....+.+.++|++|+|||++|..++++..... .. -+..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 45899999999999999776666778999999999999999998873111 11 1233332 1 111111 0
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc---------ccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD---------LSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~---------~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
+.. .....++.+..+.+.+. .++++|+||+++.... ...+. .+.......++|.+|....+..
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lL--kp~l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANIL--KPALARGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHh--HHHHhCCCcEEEEeCCHHHHHH
Confidence 000 11223334444444333 4678999999974321 11111 1211223345665555544311
Q ss_pred -------hccCCCceeecCCChHHHHHHHHHH
Q 043737 209 -------QMEAHKSFKVERLGYEDAWKLFEEK 233 (371)
Q Consensus 209 -------~~~~~~~~~l~~L~~~ea~~ll~~~ 233 (371)
.......+.+...+.++...+++..
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1123456888889999988887654
No 107
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.42 E-value=1e-05 Score=78.11 Aligned_cols=203 Identities=15% Similarity=0.088 Sum_probs=134.9
Q ss_pred CCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccC--CC---CCCCeEEEEEeCCcCCHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLH--TP---NDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~---~~f~~~~wv~~~~~~~~~~ 130 (371)
|..+-+|+.+..+|.+++.. +..+.+.|.|.+|+|||..+..|.+.+.. .+ ..| ..+.++.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHH
Confidence 46678899999999888763 23459999999999999999999987631 11 223 344555555667999
Q ss_pred HHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-----CCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc
Q 043737 131 IQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-----NKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 131 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~ 203 (371)
++..|..++.. ........+..+..+.. .+++++++|+++.... -+-+...+.|....+++++|.+=.
T Consensus 474 ~Y~~I~~~lsg-----~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSG-----ERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhccc-----CcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999999865 33344445555555543 4678999999976533 233455566777788887764322
Q ss_pred h--HH---------HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 204 L--EV---------CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 204 ~--~~---------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
. ++ ... -+...+.+.|.+.++-.+.+..++.....-.....+-.+++++...|..-.|+...-+..
T Consensus 549 NTmdlPEr~l~nrvsSR-lg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSR-LGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccccCHHHHhccchhhh-ccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 11 111 234567889999999999998887655322223344456777777777767766664433
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.42 E-value=1e-06 Score=81.34 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC--eEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD--FVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...++|+|+.|.|||.|++.+.+.. ..... .++++ +...+...++..+.. .....+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk~ 172 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFKE 172 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHHH
Confidence 6799999999999999999999998 23333 45554 334555555555431 22334444
Q ss_pred HhCCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCch---------HHHhhccCCCceeecCCChHHHH
Q 043737 161 NMSNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTAREL---------EVCGQMEAHKSFKVERLGYEDAW 227 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~ea~ 227 (371)
.. .-=++++||++.... -+.+...++.....|..|++|++.. .+.+.+..+-.+++.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 44 223999999974322 2223333332233445899998763 33445566778999999999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 228 KLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
.++.+.+.......++ +.+..|++.....=.
T Consensus 251 aiL~kka~~~~~~i~~---ev~~~la~~~~~nvR 281 (408)
T COG0593 251 AILRKKAEDRGIEIPD---EVLEFLAKRLDRNVR 281 (408)
T ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHHhhccHH
Confidence 9999987655544443 336666666555433
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.42 E-value=1.1e-05 Score=69.09 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.++|.+.+.+.|.+.... .....+.+||..|+|||+|++.+.+..
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 46789999998888766432 356788999999999999999999887
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.41 E-value=4.3e-06 Score=86.22 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=89.8
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CC-CC-eEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--ND-FD-FVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~-f~-~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.++.++...|.......+.++|++|+|||++|..++++..... .. .. .++.++++ .+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh----h
Confidence 45899999999999999776667788999999999999999998872110 00 11 22222221 111 0
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc-------ccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD-------LSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
... .....+..+..+...+. +++.+|+||+++.... .+......+.......++|.+|....+..
T Consensus 243 ~~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 GAK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred cch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 000 11122333334443332 4689999999985421 11111112211222344554554443311
Q ss_pred -------hccCCCceeecCCChHHHHHHHHHHh
Q 043737 209 -------QMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 209 -------~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
.......+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11234678899999999999987654
No 111
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.40 E-value=9.4e-07 Score=80.80 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=64.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhccCCCCCCcCC
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL--QLEQIQGSIAKKINLFNESWNSRS 150 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~ 150 (371)
+++.+.. +......|+|++|+|||||++++++... ..+|+.++|+.+.... .+.++.+.+...+-.... ....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~--d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF--DEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC--CCCH
Confidence 3444433 3455788999999999999999999983 3389999999987766 677777777643222211 1111
Q ss_pred HHH-----HHHHHHHH--hCCCceEEEEeCCCCc
Q 043737 151 LQE-----KSQDIVKN--MSNKKFVLLLDHIWEL 177 (371)
Q Consensus 151 ~~~-----~~~~l~~~--l~~~~~LlVlDdv~~~ 177 (371)
... ..-...+. ..+++++|++|++...
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111 11111111 2578999999999643
No 112
>CHL00181 cbbX CbbX; Provisional
Probab=98.39 E-value=1.3e-05 Score=71.81 Aligned_cols=134 Identities=9% Similarity=0.066 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
..+.++|++|+|||++|+.+++... ....-...-|+.++ ..++. ..+.. ..... ...+.+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~-~~g~~~~~~~~~v~----~~~l~----~~~~g-------~~~~~-~~~~l~~a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY-KLGYIKKGHLLTVT----RDDLV----GQYIG-------HTAPK-TKEVLKKAM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEec----HHHHH----HHHhc-------cchHH-HHHHHHHcc
Confidence 3588999999999999999988752 11111111133333 12222 21110 01111 122222222
Q ss_pred CCceEEEEeCCCCcc-----------cccccccccCCCCCCCcEEEEecCchHHHhh--------ccCCCceeecCCChH
Q 043737 164 NKKFVLLLDHIWELV-----------DLSQVGLPVPCRTSASNKTVFTARELEVCGQ--------MEAHKSFKVERLGYE 224 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~-----------~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~--------~~~~~~~~l~~L~~~ 224 (371)
.-+|+||+++... ..+.+...+. ....+..||+++........ ..-...+.+++++.+
T Consensus 123 --ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 123 --GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --CCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 2499999997531 1122222222 23345566666654322110 012357899999999
Q ss_pred HHHHHHHHHhCCC
Q 043737 225 DAWKLFEEKVGKE 237 (371)
Q Consensus 225 ea~~ll~~~~~~~ 237 (371)
|..+++...+...
T Consensus 200 el~~I~~~~l~~~ 212 (287)
T CHL00181 200 ELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887543
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.38 E-value=4.9e-06 Score=85.51 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=88.1
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CC--CCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--ND--FDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.++.+++..|.......+.++|++|+|||++|..++.+..... .. ...+++++++.- . .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~----a 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V----A 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h----h
Confidence 56899999999999999776667888999999999999999999872110 00 112333333221 0 0
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHh--CCCceEEEEeCCCCcccc-------cccccccCCCCCCCcEEEEecCchHHH-
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNM--SNKKFVLLLDHIWELVDL-------SQVGLPVPCRTSASNKTVFTARELEVC- 207 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~-------~~~~~~l~~~~~~~~~iliTsR~~~~~- 207 (371)
... .....+..+..+...+ .+++++|++|+++....- +.-....+.......++|-+|....+.
T Consensus 248 g~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 GAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred ccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 000 1112223333333322 246889999999754211 111111221122334555554444321
Q ss_pred ------hhccCCCceeecCCChHHHHHHHHHHh
Q 043737 208 ------GQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 208 ------~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
........+.+..-+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111233467777778899888886554
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.3e-05 Score=73.23 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=58.5
Q ss_pred CceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCch-HHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCC
Q 043737 165 KKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTAREL-EVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILD 240 (371)
Q Consensus 165 ~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~-~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~ 240 (371)
++-++|||+++.+. ..+.+...+. ....++.+|++|.+. .+.. ..+....+.+.+++.+++.+.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 34466789998653 3344444444 334456666665553 3332 2345677999999999999999876421
Q ss_pred CCCCHHHHHHHHHHHcCCCcHHHHH
Q 043737 241 SHPDIPELAETVAKECGGLPLALIT 265 (371)
Q Consensus 241 ~~~~~~~~~~~i~~~~~g~Plal~~ 265 (371)
. ..+.+..++..++|.|.....
T Consensus 181 ~---~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 181 S---DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred C---ChHHHHHHHHHcCCCHHHHHH
Confidence 1 123366778999999975443
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=2.7e-06 Score=78.22 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCCCcCCHHHHHH--
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD--LQLEQIQGSIAKKINLFNESWNSRSLQEKSQ-- 156 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-- 156 (371)
+....++|+|++|+|||||++.+++... ..+|+..+|+.+... .++.++++.+...+-...-+.+.........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3456899999999999999999999873 347898889988755 6888999998654432221111111111111
Q ss_pred --HHHHH-hCCCceEEEEeCCCCc
Q 043737 157 --DIVKN-MSNKKFVLLLDHIWEL 177 (371)
Q Consensus 157 --~l~~~-l~~~~~LlVlDdv~~~ 177 (371)
..... ..+++++|++|+++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 11111 2578999999999743
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.33 E-value=2.9e-06 Score=79.99 Aligned_cols=171 Identities=14% Similarity=0.148 Sum_probs=94.6
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|.+..+++|.+++.- ...+.+.|+|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~----s 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVG----S 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEec----c
Confidence 357888888888877631 234678899999999999999999987 3333 11111 0
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccC-CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 192 (371)
.+.. .. ...........+.....+.+++++||+++.... +..+...+. ....
T Consensus 252 eL~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1111 10 011111111222222245788999999863311 000110111 0123
Q ss_pred CCcEEEEecCchHHH-hhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 193 ASNKTVFTARELEVC-GQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 193 ~~~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.+..||+||...... ..+ .....+.++..+.++..++|..+........+.+ ...++..+.|.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 356677776653322 211 1235689999999999999998775544333333 455666666643
No 117
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.32 E-value=1e-05 Score=67.89 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=68.1
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
..+||-++.++++.-...+++.+.+.|.||+|+||||-+..+++.+. ....-+.++-++++....++-+-..|-.....
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 56899999999998888888899999999999999999999998882 23344466666666555444333333221111
Q ss_pred CCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc
Q 043737 142 FNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD 179 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~ 179 (371)
.. .+ .++--++|||+.+.+.+
T Consensus 106 kv-----------------~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 106 KV-----------------TLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred hc-----------------cCCCCceeEEEeeccchhhh
Confidence 00 01 13445899999987643
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.31 E-value=8.9e-06 Score=81.95 Aligned_cols=156 Identities=12% Similarity=0.227 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPND---FDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
+.++||+.++.++.+.|.......+.|+|++|+|||++|..+++........ .+..+|. . +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHHHH----hc-
Confidence 4589999999999999977656677899999999999999999875221111 1233331 1 11111 10
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcc--------cccc--cccccCCCCCCCcEEEEecCchHHH
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELV--------DLSQ--VGLPVPCRTSASNKTVFTARELEVC 207 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------~~~~--~~~~l~~~~~~~~~iliTsR~~~~~ 207 (371)
+.. .....+.....+...+ +..+.+|+||+++... +.+. +..++. .....++|-+|....+.
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFS 328 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHH
Confidence 000 1122333333443333 3467799999997431 1111 111111 22334445444443321
Q ss_pred h-------hccCCCceeecCCChHHHHHHHHHHh
Q 043737 208 G-------QMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 208 ~-------~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
. .....+.+.+++.+.+++.+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 11234679999999999999998654
No 119
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-05 Score=75.87 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=96.2
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.++=|-+..+++|.+.+.- ...+-|.+|||+|+|||.||+.++.++ .+-++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--------~vPf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--------GVPFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--------CCceEeecch----
Confidence 3467788888888776642 256789999999999999999999998 2344444432
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-------------ccccc---cccCCCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-------------LSQVG---LPVPCRTSA 193 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~---~~l~~~~~~ 193 (371)
+|...+ ...+.+.+...+.+....-+++++||+++-..- ..++. ..+......
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 122221 233333344444444556899999999974310 11111 111111111
Q ss_pred Cc-EEEE--ecCchHHHhhc---c-CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043737 194 SN-KTVF--TARELEVCGQM---E-AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL 259 (371)
Q Consensus 194 ~~-~ili--TsR~~~~~~~~---~-~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 259 (371)
|- .++| |+|...+-..+ + -...|.+.-=+...-.+++.....+.....+-+ .++|++.+-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 22 3333 67775543222 1 224466665555555666666554444333333 56777777765
No 120
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.30 E-value=9.9e-06 Score=77.63 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=88.0
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CCCCeEEEEEeCCcC
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--NDFDFVIWVVASKDL 126 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~~ 126 (371)
..+.|.+..++++.+.+.- ...+-+.|+|++|+|||++|+.+++.+.... .......|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4577899999998887641 2356799999999999999999999872110 01223444444321
Q ss_pred CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc--------------ccccccccCC-C
Q 043737 127 QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD--------------LSQVGLPVPC-R 190 (371)
Q Consensus 127 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~--------------~~~~~~~l~~-~ 190 (371)
+++.... + . ............+... .+++++++||+++.... +..+...+.. .
T Consensus 261 ---eLl~kyv---G---e--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 ---ELLNKYV---G---E--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ---hhccccc---c---h--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1111000 0 0 0001111122222221 34789999999974311 1112112221 1
Q ss_pred CCCCcEEEEecCchHH-Hhhc----cCCCceeecCCChHHHHHHHHHHhCC
Q 043737 191 TSASNKTVFTARELEV-CGQM----EAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 191 ~~~~~~iliTsR~~~~-~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
...+..||.||..... -..+ .-...|+++..+.++..++|..++..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1233344445543322 1111 12345899999999999999998753
No 121
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.29 E-value=5.2e-05 Score=73.69 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=95.7
Q ss_pred CccccchhHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+++|-+...+++.+.+. . ...+-+.++|++|+|||+||+.++... ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 457888776666554432 1 124568999999999999999999886 2222 22221 1
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccCC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVPC-RTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 192 (371)
++.... ...........+.......+.+|+|||++.... +..+...+.. ...
T Consensus 123 ~~~~~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 221111 011112222233333345778999999975311 0011111110 122
Q ss_pred CCcEEEEecCchH-H----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHH
Q 043737 193 ASNKTVFTARELE-V----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITV 266 (371)
Q Consensus 193 ~~~~iliTsR~~~-~----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 266 (371)
.+..||.||.... + .+...-...+.++..+.++-.+++...+.......+. ....+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCCHHHHHHH
Confidence 3444555554432 1 1111223568888888888899998877544322211 256788888874 4444444
Q ss_pred H
Q 043737 267 G 267 (371)
Q Consensus 267 a 267 (371)
.
T Consensus 268 ~ 268 (495)
T TIGR01241 268 L 268 (495)
T ss_pred H
Confidence 3
No 122
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=74.84 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=83.1
Q ss_pred ccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC
Q 043737 65 VGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN 143 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~ 143 (371)
..|..-+.++.+.+..... ++.|.|+-++||||+++.+.... ... +++++..... +...+ .+....
T Consensus 20 ~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~~~~----- 86 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDLLRA----- 86 (398)
T ss_pred hhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHHHHH-----
Confidence 3344556666666643333 99999999999999997777666 222 5555543321 11111 111111
Q ss_pred CCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhh------ccCCCcee
Q 043737 144 ESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQ------MEAHKSFK 217 (371)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~------~~~~~~~~ 217 (371)
+...-..++.+++||.|+....|......+. ..... +++||+.+..+... .+....+.
T Consensus 87 --------------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~ 150 (398)
T COG1373 87 --------------YIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred --------------HHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEE
Confidence 1111112667999999999999888655554 22223 78888777554221 13345789
Q ss_pred ecCCChHHHHHH
Q 043737 218 VERLGYEDAWKL 229 (371)
Q Consensus 218 l~~L~~~ea~~l 229 (371)
+.||+..|-..+
T Consensus 151 l~PlSF~Efl~~ 162 (398)
T COG1373 151 LYPLSFREFLKL 162 (398)
T ss_pred ECCCCHHHHHhh
Confidence 999999998754
No 123
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3e-05 Score=71.12 Aligned_cols=161 Identities=9% Similarity=0.061 Sum_probs=86.6
Q ss_pred cccc-chhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-
Q 043737 63 TVVG-LQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI- 139 (371)
Q Consensus 63 ~~vG-R~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l- 139 (371)
.++| .+..++.|...+..++. ..+.++|+.|+|||++|..+++.+.. ....... .++.. ...+.+...-
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 3566 77788888888876654 56789999999999999999888621 1101000 00000 0111110000
Q ss_pred ---ccCCCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc-hHHHh
Q 043737 140 ---NLFNESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE-LEVCG 208 (371)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~-~~~~~ 208 (371)
....+.......++.. .+.+.+ .+++-++|+|+++.... .+.+...+. ....++.+|++|.+ ..+..
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCcH
Confidence 0000000111122221 122211 23455899999976533 344444444 44456666655544 33322
Q ss_pred -hccCCCceeecCCChHHHHHHHHHH
Q 043737 209 -QMEAHKSFKVERLGYEDAWKLFEEK 233 (371)
Q Consensus 209 -~~~~~~~~~l~~L~~~ea~~ll~~~ 233 (371)
..+....+++.+++.++..+.+...
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2345678999999999998888653
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=5.8e-05 Score=68.36 Aligned_cols=176 Identities=10% Similarity=0.069 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh----ccC-
Q 043737 69 STFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI----NLF- 142 (371)
Q Consensus 69 ~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l----~~~- 142 (371)
...+++...+..++. ..+.++|+.|+||+++|..+++.+.- ......- . . ...+.+...- ..-
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~------~-c---~~c~~~~~g~HPD~~~i~ 79 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA------A-Q---RTRQLIAAGTHPDLQLVS 79 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC------c-c---hHHHHHhcCCCCCEEEEe
Confidence 445677777766554 46889999999999999999887631 1111000 0 0 0000000000 000
Q ss_pred -CCCC------CcCCHHHHHHHHHHHhC-----CCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecC-chHHH
Q 043737 143 -NESW------NSRSLQEKSQDIVKNMS-----NKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTAR-ELEVC 207 (371)
Q Consensus 143 -~~~~------~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR-~~~~~ 207 (371)
.+.. ..... +.++.+.+.+. ++.-++|||+++.+.. -+.+...+. ....++.+|++|. ...+.
T Consensus 80 ~~p~~~~~k~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 80 FIPNRTGDKLRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARLP 157 (319)
T ss_pred cCCCcccccccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhCc
Confidence 0000 00111 22233333332 3455999999986633 333444444 4445665555554 44443
Q ss_pred hh-ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 208 GQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 208 ~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.. .+....+.+.+++.+++.+.+.... .+ .+.+..++..++|.|+....+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~------~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQG------VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcC------CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 32 3456778999999999999987541 11 222667899999999865433
No 125
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.3e-05 Score=68.38 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=108.3
Q ss_pred cccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 64 VVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
+=|-++.+++|.+.+.- +.++-|.+|||+|+|||-||++++++- ... |+.+.. .+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvg----SE 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVG----SE 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEecc----HH
Confidence 45677888888777641 367789999999999999999999986 333 333332 12
Q ss_pred HHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc--------------------ccccccccCC
Q 043737 131 IQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD--------------------LSQVGLPVPC 189 (371)
Q Consensus 131 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~--------------------~~~~~~~l~~ 189 (371)
+ .+..-.. -..+++.+.+..+ ..+++|++|+++.... +.++..+
T Consensus 221 l----VqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF--- 285 (406)
T COG1222 221 L----VQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF--- 285 (406)
T ss_pred H----HHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC---
Confidence 2 2222110 1233444444444 4689999999974310 1122211
Q ss_pred CCCCCcEEEEec-CchHHHhh-cc---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc----
Q 043737 190 RTSASNKTVFTA-RELEVCGQ-ME---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP---- 260 (371)
Q Consensus 190 ~~~~~~~iliTs-R~~~~~~~-~~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P---- 260 (371)
....+.+||..| |...+-+. +. -...|+++.=+.+.-.+.|.-+...-....+-+ .+.|++.|.|.-
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdl 361 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADL 361 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHH
Confidence 345677888755 44332211 12 234678875555555666777766555444444 466677777764
Q ss_pred HHHHHHHHHHc--CCC---ChhHHHHHHHHHh
Q 043737 261 LALITVGRAMA--SKK---TPREWEHAIEVLR 287 (371)
Q Consensus 261 lal~~~a~~l~--~~~---~~~~~~~~l~~l~ 287 (371)
.|+..=|++++ ..+ +.+++..+.++.-
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 34444455443 222 3345555444433
No 126
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=7.2e-06 Score=80.62 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=40.6
Q ss_pred CCCccccchhHHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEE-----QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~-----~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....++|.++.++++..++... ..++++|+|++|+||||+++.++..+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466899999999999998752 34579999999999999999998876
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.20 E-value=1e-05 Score=77.02 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=110.1
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH--
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK-- 138 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~-- 138 (371)
+++||-+.....|..++..++ .......|+.|+||||+|+-++..+-- ...-. ...++.=...+.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC-~~~~~-------~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC-ENGPT-------AEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC-CCCCC-------CCcchhhhhhHhhhcCCc
Confidence 557999999999999997765 356778999999999999999888621 11000 0011111111222111
Q ss_pred hccCCCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCC--CcccccccccccCCCCCCCcEEEEecCc-hHH-Hhh
Q 043737 139 INLFNESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIW--ELVDLSQVGLPVPCRTSASNKTVFTARE-LEV-CGQ 209 (371)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~~~iliTsR~-~~~-~~~ 209 (371)
+....-+-.+.+.-+-++.+.+.. .++.=++|+|+++ +...+..+...+. ....+...|+.|.+ ..+ ...
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchhh
Confidence 000000001111112233333333 2344499999997 3344555555555 44556665554444 333 233
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
.+..+.|.+..++.++....+...+.......+ ++....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 456688999999999999999998876654333 3447778888888554
No 128
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00014 Score=66.05 Aligned_cols=174 Identities=7% Similarity=0.039 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc-----cCC
Q 043737 70 TFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN-----LFN 143 (371)
Q Consensus 70 ~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~-----~~~ 143 (371)
.-+.|.+.+.++. ...+.++|+.|+||+++|..++..+.-. ...... .++.. ...+.+...-. ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcc
Confidence 3456777776654 4577899999999999999999887311 111000 00000 11111111000 000
Q ss_pred CCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCc-hHHHhh-ccCCC
Q 043737 144 ESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTARE-LEVCGQ-MEAHK 214 (371)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~-~~~~~~-~~~~~ 214 (371)
........++ ++.+.+.+ .++.-++|+|+++.+.. ...+...+. ....++.+|++|.+ ..+... .+...
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhce
Confidence 0001112222 22233332 24455899999986643 344444454 44555566655554 344432 34567
Q ss_pred ceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 215 SFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 215 ~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
.+.+.+++.++..+.+...... + ...+...+..++|.|+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSA-----E---ISEILTALRINYGRPL 198 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhcc-----C---hHHHHHHHHHcCCCHH
Confidence 8999999999999999876421 1 1125677888999996
No 129
>CHL00176 ftsH cell division protein; Validated
Probab=98.18 E-value=5.4e-05 Score=74.99 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=96.1
Q ss_pred CccccchhHHHHHHHH---HhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRC---LMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~---L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..+.|.++..+++.+. +... ..+-|.++|++|+|||+||+.++... ... |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 4578877665555444 3321 24579999999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccC-CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 192 (371)
++.... ...........+.......+++|+|||++.... +..+...+. ....
T Consensus 251 ~f~~~~-----------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF-----------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh-----------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111110 001111222233344456789999999974310 111111111 0123
Q ss_pred CCcEEEEecCchHH-Hhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHHHH
Q 043737 193 ASNKTVFTARELEV-CGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALITV 266 (371)
Q Consensus 193 ~~~~iliTsR~~~~-~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 266 (371)
.+..||.||..... ...+ .-...+.++..+.++-.++++.++....... ......+++.+.| .+--|..+
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCCCHHHHHHH
Confidence 34455555544322 1111 1235688888899999999988876532111 2236778888887 34334433
No 130
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.17 E-value=2.4e-05 Score=69.33 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=104.2
Q ss_pred CccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-----CHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-----QLEQIQ 132 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~ 132 (371)
..++|-.++...+..++.+ +...-|.|.||.|+|||+|......+. +..-...+-+.++... .+..+.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4589999998999888875 456788899999999999998887774 2222334444444432 233444
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHHHHHhC------CCceEEEEeCCCCccc-------ccccccccCCCCCCCcEEEE
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDIVKNMS------NKKFVLLLDHIWELVD-------LSQVGLPVPCRTSASNKTVF 199 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~-------~~~~~~~l~~~~~~~~~ili 199 (371)
+++..++..... ...+..+....+...|+ +.++++|+|++|--.. +..+...-. ...+=|.|-+
T Consensus 101 rql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs-~r~Piciig~ 177 (408)
T KOG2228|consen 101 RQLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS-ARAPICIIGV 177 (408)
T ss_pred HHHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh-cCCCeEEEEe
Confidence 444444433221 34445555666666664 2468999999863211 122222211 3445566778
Q ss_pred ecCchHH-------HhhccCCCceeecCCChHHHHHHHHHHhC
Q 043737 200 TARELEV-------CGQMEAHKSFKVERLGYEDAWKLFEEKVG 235 (371)
Q Consensus 200 TsR~~~~-------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~ 235 (371)
|||-..+ -+..+...++-++.++.++..+++++.+.
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 9997533 23333334566678889999999998874
No 131
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=3.9e-05 Score=74.51 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
..+-+|-++..++|++.|.- -+.+++.++||+|+|||+|++.+++.. ...| +-++++.-.+..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEI--- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEI--- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHh---
Confidence 35569999999999998852 245799999999999999999999998 4444 23344443333222
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc------------------cccccc-ccCCCCCCCc
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD------------------LSQVGL-PVPCRTSASN 195 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------------------~~~~~~-~l~~~~~~~~ 195 (371)
..+.+.....=++..+..+.+ .+.++-+++||+++.+.. -..|.. ++.....-..
T Consensus 393 -----RGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 393 -----RGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -----ccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 122222233333444444443 344566999999985421 111211 1111122222
Q ss_pred EEEEecCchH--H-HhhccCCCceeecCCChHHHHHHHHHHh
Q 043737 196 KTVFTARELE--V-CGQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 196 ~iliTsR~~~--~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
.++|||-+.. + .+.+..-+++++.+.+.+|-.+.-.+++
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3445555421 1 2223455789999999999988887776
No 132
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1.1e-05 Score=63.88 Aligned_cols=90 Identities=21% Similarity=0.079 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|++|+||||++..++.... .....+++++.+........... .... ...............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIV---GGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhh---hccCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999882 22234566654433221111111 0011 11112233333344444444
Q ss_pred CCC-ceEEEEeCCCCccc
Q 043737 163 SNK-KFVLLLDHIWELVD 179 (371)
Q Consensus 163 ~~~-~~LlVlDdv~~~~~ 179 (371)
... ..++++|+++....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 443 48999999986543
No 133
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00017 Score=65.39 Aligned_cols=176 Identities=9% Similarity=0.015 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc----CC
Q 043737 69 STFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL----FN 143 (371)
Q Consensus 69 ~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~----~~ 143 (371)
...+++.+.+..++ ...+.++|+.|+||+++|..+++.+.-.. ..+. .++.. ...+.+...-.. ..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~-~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSE----ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC-CCCC----CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34466677665554 45788999999999999999988763111 1000 01110 111111110000 00
Q ss_pred CC--CCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHHHh-hccC
Q 043737 144 ES--WNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEVCG-QMEA 212 (371)
Q Consensus 144 ~~--~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~~~-~~~~ 212 (371)
+. ......++. +.+.+.+ .++.-++|+|+++.+. ..+.+...+. ....++.+|+ |+....+.. ..+.
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 00 011222222 2222222 2344599999998653 3444444454 4444555555 454444433 3455
Q ss_pred CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 213 HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 213 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
...+.+.+++.+++.+.+.... .+ .+..+++.++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 6789999999999999987642 11 1456788999999866543
No 134
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.14 E-value=3e-05 Score=63.43 Aligned_cols=137 Identities=13% Similarity=0.172 Sum_probs=74.3
Q ss_pred cchhHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccCCCC-----------------CCCeEEEEEeCCc--
Q 043737 66 GLQSTFDRVWRCLMEEQM-GIVGLYGMGEVGKTTLLTQINKKFLHTPN-----------------DFDFVIWVVASKD-- 125 (371)
Q Consensus 66 GR~~~~~~l~~~L~~~~~-~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----------------~f~~~~wv~~~~~-- 125 (371)
|-+...+.|.+.+.+++. ..+.++|+.|+||+++|..+++.+-.... ....+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777888888877654 46899999999999999999988732111 1223333332221
Q ss_pred -CCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecC
Q 043737 126 -LQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTAR 202 (371)
Q Consensus 126 -~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR 202 (371)
...+++. .+...+.... ..++.=++||||++.+. ....+...+. ....++.+|++|.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 1222222 3333332211 01345599999998653 3344444444 4556777777776
Q ss_pred chH-H-HhhccCCCceeecCCC
Q 043737 203 ELE-V-CGQMEAHKSFKVERLG 222 (371)
Q Consensus 203 ~~~-~-~~~~~~~~~~~l~~L~ 222 (371)
+.. + .+..+....+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 643 2 2223445567776654
No 135
>PRK08116 hypothetical protein; Validated
Probab=98.13 E-value=8.3e-06 Score=72.41 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...+.|+|++|+|||.||..+++.+. .....+++++ ..+++..+....... ...+ ...+.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l 176 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSL 176 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHh
Confidence 34689999999999999999999983 2223456664 344555555443211 1111 22233444
Q ss_pred CCCceEEEEeCCC--Ccccccc--cccccCCCCCCCcEEEEecCc
Q 043737 163 SNKKFVLLLDHIW--ELVDLSQ--VGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 163 ~~~~~LlVlDdv~--~~~~~~~--~~~~l~~~~~~~~~iliTsR~ 203 (371)
.+-. ||||||+. ...+|.. +...+......+..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4444 89999994 3333322 222222122345668888864
No 136
>PRK10536 hypothetical protein; Provisional
Probab=98.12 E-value=7.7e-05 Score=64.75 Aligned_cols=135 Identities=11% Similarity=0.083 Sum_probs=75.6
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc---------CCHH---
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD---------LQLE--- 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---------~~~~--- 129 (371)
..+.+|......+..++.+. .+|.+.|++|+|||+||..++.+.. ....+..++...-.-. -+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 34677888888899988653 4999999999999999999888631 1234554444321110 0111
Q ss_pred -HHHHHHHHHhccCCCCCCcCCHHHHHH--------HHHHHhCCCc---eEEEEeCCCCcccccccccccCCCCCCCcEE
Q 043737 130 -QIQGSIAKKINLFNESWNSRSLQEKSQ--------DIVKNMSNKK---FVLLLDHIWELVDLSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 130 -~~~~~l~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~~~---~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~i 197 (371)
..+.-+...+.... .....+.... .-..++++++ -++|+|++++... ..+...+. ....++++
T Consensus 132 ~p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~lt-R~g~~sk~ 206 (262)
T PRK10536 132 APYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLT-RLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHh-hcCCCCEE
Confidence 11222222221100 0000111100 0012455654 4999999976644 33333344 56789999
Q ss_pred EEecCch
Q 043737 198 VFTAREL 204 (371)
Q Consensus 198 liTsR~~ 204 (371)
++|.-..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9987654
No 137
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.11 E-value=0.00017 Score=66.28 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC----CHHHHHHHHHHHh
Q 043737 68 QSTFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL----QLEQIQGSIAKKI 139 (371)
Q Consensus 68 ~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~----~~~~~~~~l~~~l 139 (371)
+.-.+.|.+.+.+ +...+|+|.|.-|+|||++.+.+.+.+......--.+++++..... -...++..+..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4455667777765 3567999999999999999999999983221112244454433222 2344454554444
No 138
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00017 Score=66.00 Aligned_cols=176 Identities=8% Similarity=0.053 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc-----cC
Q 043737 69 STFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN-----LF 142 (371)
Q Consensus 69 ~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~-----~~ 142 (371)
..-+++.+.+.+++ ...+.++|+.|+||+++|..++..+.-. ...+.. .++.. ...+.+...-. ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGHK---SCGHC----RGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34467777776654 4678899999999999999988887311 100000 01110 01111110000 00
Q ss_pred CCC-CCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec-CchHHHhh-ccC
Q 043737 143 NES-WNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA-RELEVCGQ-MEA 212 (371)
Q Consensus 143 ~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs-R~~~~~~~-~~~ 212 (371)
... ......++. +.+.+.+ .+++-++|+|+++.+.. -+.+...+. ....++.+|++| +...+... .+.
T Consensus 81 p~~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 000 011222222 2233322 24555999999986633 344444454 344455555544 44444433 455
Q ss_pred CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHH
Q 043737 213 HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLA 262 (371)
Q Consensus 213 ~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 262 (371)
...+.+.+++.+++.+.+....+ .+ .+.+..++..++|.|..
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----~~---~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVT-----MS---QDALLAALRLSAGAPGA 200 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccC-----CC---HHHHHHHHHHcCCCHHH
Confidence 67889999999999998876431 11 22367889999999963
No 139
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.09 E-value=7.5e-06 Score=64.40 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999998
No 140
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0014 Score=60.79 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.|-..++||+|+|||+++.++++.+ .|+ |+-+.++...+-.+ ++.|+...
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~t----------------------- 284 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLAT----------------------- 284 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHhC-----------------------
Confidence 3678899999999999999999998 233 33344433322223 44444332
Q ss_pred CCCceEEEEeCCCCccccc--------------------ccccccC-CCCCC-CcEEEE-ecCchHHH--hhccC---CC
Q 043737 163 SNKKFVLLLDHIWELVDLS--------------------QVGLPVP-CRTSA-SNKTVF-TARELEVC--GQMEA---HK 214 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~~~--------------------~~~~~l~-~~~~~-~~~ili-TsR~~~~~--~~~~~---~~ 214 (371)
..+-+||+.|++...++. .+...+. .+..+ +=+|+| ||-...-. ..+.+ ..
T Consensus 285 -~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 285 -PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred -CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 234588999987542210 0111111 12222 335554 66654321 11122 34
Q ss_pred ceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC-Ch-hHHHHHHHHHhcc
Q 043737 215 SFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKK-TP-REWEHAIEVLRSS 289 (371)
Q Consensus 215 ~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~-~~-~~~~~~l~~l~~~ 289 (371)
.+.+.-=+++.-..|+.+.++.+. +. .+..+|.+...|.-+.=..++..|-.+. +. ...+.+.+.+.+.
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~---~h---~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE---DH---RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESK 434 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC---Cc---chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 578888899999999999886432 22 3467777777777666666666654433 22 2344444444443
No 141
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.9e-05 Score=66.47 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcc-CCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFL-HTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
-.|+|.+|||+|.|||+|++.+++++. +..+.+....-+.++ -..++......- ..-.......+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsES--------gKlV~kmF~kI~E 243 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSES--------GKLVAKMFQKIQE 243 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhh--------hhHHHHHHHHHHH
Confidence 358999999999999999999999973 123334333333333 234444444332 2334455666666
Q ss_pred HhCCCc--eEEEEeCCCCc
Q 043737 161 NMSNKK--FVLLLDHIWEL 177 (371)
Q Consensus 161 ~l~~~~--~LlVlDdv~~~ 177 (371)
.+..+. +.+.+|+|+..
T Consensus 244 Lv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHhCCCcEEEEEeHHHHHH
Confidence 666544 46678998643
No 142
>PRK08181 transposase; Validated
Probab=98.03 E-value=1.4e-05 Score=70.69 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHH
Q 043737 76 RCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKS 155 (371)
Q Consensus 76 ~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 155 (371)
+|+. ....+.|+|++|+|||.||..+++... .....+.|++ ..+++..+.... ...+....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVAR-------RELQLESA- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHH-------hCCcHHHH-
Confidence 4553 345799999999999999999998762 2223455553 345555554332 11122222
Q ss_pred HHHHHHhCCCceEEEEeCCCCc--ccc--cccccccCCCCCCCcEEEEecCch
Q 043737 156 QDIVKNMSNKKFVLLLDHIWEL--VDL--SQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 156 ~~l~~~l~~~~~LlVlDdv~~~--~~~--~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
.+.+. +.-||||||+... ... ..+...+..... +..+||||...
T Consensus 162 ---l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~ 209 (269)
T PRK08181 162 ---IAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQP 209 (269)
T ss_pred ---HHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCC
Confidence 22222 2349999999632 111 112222221112 24688888753
No 143
>PRK12377 putative replication protein; Provisional
Probab=98.03 E-value=1.9e-05 Score=68.97 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
....+.|+|++|+|||+||..+++.+. .....+.++++ .+++..+-.... ...... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~------~~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYD------NGQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHh------ccchHH----HHHHH
Confidence 346899999999999999999999983 22233566543 345555544331 111111 22333
Q ss_pred hCCCceEEEEeCCC
Q 043737 162 MSNKKFVLLLDHIW 175 (371)
Q Consensus 162 l~~~~~LlVlDdv~ 175 (371)
+. +.-||||||+.
T Consensus 161 l~-~~dLLiIDDlg 173 (248)
T PRK12377 161 LC-KVDLLVLDEIG 173 (248)
T ss_pred hc-CCCEEEEcCCC
Confidence 32 34499999994
No 144
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.03 E-value=7.4e-05 Score=76.21 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|.+..+++|.+.+.- ...+.+.|+|++|+|||+||+.+++.. ...| +.++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999888777631 234678999999999999999999886 2222 222211
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-------------ccccccccCCCCCCCcE
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-------------LSQVGLPVPCRTSASNK 196 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~~ 196 (371)
++.. .. ...........+.......+.+|+||+++.... ...+...+......+..
T Consensus 247 ~i~~----~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIMS----KY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHhc----cc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 00 111111222222233345678999999864311 11121222211122334
Q ss_pred EEE-ecCchH-HHhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 197 TVF-TARELE-VCGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 197 ili-TsR~~~-~~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
++| ||.... +...+ .-...+.+...+.++-.+++...........+. ....+++.+.|..
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCC
Confidence 444 443322 21111 113457788888888888888665433322222 2577888888865
No 145
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.8e-05 Score=71.63 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=91.8
Q ss_pred CccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
..-+|.++..++|++++.- -+.+++.++||+|+|||++++.++..+ ...| +-++++.-.+..++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhc---
Confidence 4459999999999988752 356799999999999999999999998 2222 233455544444332
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc------------------ccccc-ccccCCCCCCCcE
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV------------------DLSQV-GLPVPCRTSASNK 196 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------------~~~~~-~~~l~~~~~~~~~ 196 (371)
...+.....=++..+..++.. +..+-|+.||+++... +-..| ..++. ..-.=|+
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd-Vp~DLSk 554 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD-VPVDLSK 554 (906)
T ss_pred -----ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc-cccchhh
Confidence 222222222233334333332 3455699999997531 11111 11122 1122345
Q ss_pred EEE-ecCch--HH-HhhccCCCceeecCCChHHHHHHHHHHh
Q 043737 197 TVF-TAREL--EV-CGQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 197 ili-TsR~~--~~-~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
|++ +|-+. .+ ......-+.|++.+...+|-..+-.+++
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 554 44331 00 1112344789999999999888877765
No 146
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.01 E-value=8.7e-05 Score=67.94 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=66.7
Q ss_pred HHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCe-EEEEEeCC-cCCHHHHHHHHHHHhccCCCCC
Q 043737 70 TFDRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDF-VIWVVASK-DLQLEQIQGSIAKKINLFNESW 146 (371)
Q Consensus 70 ~~~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~ 146 (371)
...++++.+.. +....+.|+|++|+|||||++++++... ..+.+. ++|+.+.. ..++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 33457777754 4455779999999999999999999873 223333 46656554 4478889988888776533211
Q ss_pred Cc---CCHHHHHHHHHHHh--CCCceEEEEeCCCC
Q 043737 147 NS---RSLQEKSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 147 ~~---~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
.. .........+.+++ .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 11111222333333 47899999999953
No 147
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00046 Score=64.88 Aligned_cols=145 Identities=23% Similarity=0.225 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHH--
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIV-- 159 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-- 159 (371)
....+.++|++|+|||+||.+++..- .|+.+=-++...- ...+......++.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM---------------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc---------------------cCccHHHHHHHHHHH
Confidence 34577899999999999999998664 4554433322211 1112222222222
Q ss_pred --HHhCCCceEEEEeCCCCcccccccccc------------cCCCCCCCcEEEE--ecCchHHHhhcc----CCCceeec
Q 043737 160 --KNMSNKKFVLLLDHIWELVDLSQVGLP------------VPCRTSASNKTVF--TARELEVCGQME----AHKSFKVE 219 (371)
Q Consensus 160 --~~l~~~~~LlVlDdv~~~~~~~~~~~~------------l~~~~~~~~~ili--TsR~~~~~~~~~----~~~~~~l~ 219 (371)
...++.--.+|+||++...+|..+... +......|-+.+| ||....+...++ -...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 223344469999999887666544332 2223334445444 666666665543 23468888
Q ss_pred CCCh-HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc
Q 043737 220 RLGY-EDAWKLFEEKVGKEILDSHPDIPELAETVAKEC 256 (371)
Q Consensus 220 ~L~~-~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~ 256 (371)
.++. ++..+.++..-. -.+.+.+..+.+....+
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8887 777777765431 12233344455555444
No 148
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00052 Score=62.83 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCceEEEEeCCCCcc--cccccccccCCCCCCCcE-EEEecCchHHHhh-ccCCCceeecCCChHHHHHHHHHHhCCCCC
Q 043737 164 NKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNK-TVFTARELEVCGQ-MEAHKSFKVERLGYEDAWKLFEEKVGKEIL 239 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~-iliTsR~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~ 239 (371)
++.-++|+|+++.+. ..+.+...+. ....++. |++|++...+... .+....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----
Confidence 344589999998653 3444444454 3444554 4556665555433 3456789999999999999997752
Q ss_pred CCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 240 DSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 240 ~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
.++ ...++..++|.|....
T Consensus 205 -~~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 205 -VAD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred -CCh-----HHHHHHHcCCCHHHHH
Confidence 111 2335778899997443
No 149
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00012 Score=68.74 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=35.9
Q ss_pred ccccch---hHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQ---STFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~---~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.-|-+ .|+++|+++|.+. -++-|.++||+|.|||-||++++-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345554 5778889988762 24679999999999999999998887
No 150
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.94 E-value=0.00012 Score=74.96 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=84.1
Q ss_pred CccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
...+|.+...++|.+++.. ...+.+.++|++|+|||++|+.++..+ ...|- -++++...+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~---~i~~~~~~~~~~i~--- 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV---RFSLGGVRDEAEIR--- 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeE---EEeCCCcccHHHHc---
Confidence 4578988888888886542 134589999999999999999999987 33332 22223222222221
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccc------cccccc--------cC-----CCC-CCCc
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDL------SQVGLP--------VP-----CRT-SASN 195 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~------~~~~~~--------l~-----~~~-~~~~ 195 (371)
...........+.....+... ...+.+++||+++....- ..+... +. ... ..+.
T Consensus 391 -----g~~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 -----GHRRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred -----CCCCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 111111222223333333333 233348899999755220 001000 00 000 1233
Q ss_pred EEEEecCchH-HH-hhccCCCceeecCCChHHHHHHHHHHh
Q 043737 196 KTVFTARELE-VC-GQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 196 ~iliTsR~~~-~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
.+|.||.... +. ........+++.+++.++-.+++.+.+
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 3444544321 11 112334578999999999888887654
No 151
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.93 E-value=0.00011 Score=70.51 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=89.0
Q ss_pred CccccchhHHHHHHHH---Hhc-------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 62 PTVVGLQSTFDRVWRC---LME-------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~---L~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
.++.|.+...+.+... +.. ...+-|.++|++|+|||.+|+.++... ...| +-++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 4567766555544432 111 235679999999999999999999987 2222 112111 11
Q ss_pred HHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCcccc--------------cccccccCCCCCCCcE
Q 043737 132 QGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVDL--------------SQVGLPVPCRTSASNK 196 (371)
Q Consensus 132 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~--------------~~~~~~l~~~~~~~~~ 196 (371)
. ... ...+ +..+..+... -...+++|+||+++....- ..+...+. ....+..
T Consensus 296 ~----~~~-------vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~ 362 (489)
T CHL00195 296 F----GGI-------VGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVF 362 (489)
T ss_pred c----ccc-------cChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceE
Confidence 1 000 1111 1222222222 2357899999999743110 00111111 1223334
Q ss_pred EEEecCchH-H----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 197 TVFTARELE-V----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 197 iliTsR~~~-~----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
||.||.... + .+...-...+.++.-+.++-.++|+.++......... ......+++.+.|.-
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 455665432 1 1111223567888888899999998887553211101 112566777777653
No 152
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.93 E-value=0.00031 Score=71.71 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=95.8
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..+.|.+...+.|.+.+.- ...+-+.++|++|+|||+||+.++... ...| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467777777766665431 234568999999999999999999987 3222 22221
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc--------------ccccccccCC-CCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD--------------LSQVGLPVPC-RTS 192 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~--------------~~~~~~~l~~-~~~ 192 (371)
.+++ ... ...+ +..+..+.... ...+++|+||+++.... ...+...+.. ...
T Consensus 521 ~~l~----~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 PEIL----SKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HHHh----hcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1111 111 1111 22333333332 45689999999974311 1111111110 122
Q ss_pred CCcEEEEecCchHH-Hhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-HHHHHH
Q 043737 193 ASNKTVFTARELEV-CGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP-LALITV 266 (371)
Q Consensus 193 ~~~~iliTsR~~~~-~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 266 (371)
.+..||.||..... ...+ .-...+.++..+.++-.++|...........+.+ ...+++.+.|.- ..|..+
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYTGADIEAV 664 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCCHHHHHHH
Confidence 34444545544332 1111 2245688888899988889887765443322223 566777887754 334443
No 153
>PRK04296 thymidine kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=67.34 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
.++.++|+.|+||||++..++.+.. .+...++.+.- ..+.......++.+++...+........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999998872 22334444421 111122233455555543322122344455555555 33
Q ss_pred CCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCchHH
Q 043737 164 NKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 164 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
++.-+||+|+++-. +++..+... ....|..|++|.+....
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~---l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEV---LDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHH---HHHcCCeEEEEecCccc
Confidence 34459999999643 212222111 13467889999887443
No 154
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.91 E-value=4.2e-05 Score=65.99 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA 122 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 122 (371)
-.++|.|.+|+|||+|+..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367789999999999999999887 677777777654
No 155
>PRK06921 hypothetical protein; Provisional
Probab=97.91 E-value=3.3e-05 Score=68.45 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA 122 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 122 (371)
....+.++|++|+|||+||..+++.+. ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999999872 221345566654
No 156
>PRK08118 topology modulation protein; Reviewed
Probab=97.90 E-value=3.4e-05 Score=63.44 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEE
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIW 119 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~w 119 (371)
+.|.|+|++|+||||||+.+++.......+++.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999997323356677776
No 157
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.85 E-value=7.2e-05 Score=63.13 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCC-CCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINLFNES-WNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 160 (371)
+++++++|+.|+||||.+.+++.+.. ..-..+..++.... ....+-++.+++.++.+... ....++.+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 46899999999999999999888873 22446777777543 35667788888888865322 123345555544444
Q ss_pred HhCCC-ceEEEEeCCC
Q 043737 161 NMSNK-KFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~-~~LlVlDdv~ 175 (371)
....+ .=++++|-.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 44333 3488888764
No 158
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.84 E-value=0.00087 Score=59.48 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHH
Q 043737 69 STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 69 ~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 132 (371)
..++++..++.. .+.|.|.|++|+|||+||+.++... .. ..+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344555555533 3477899999999999999998765 22 23455555544444443
No 159
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00063 Score=65.65 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=85.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
+..+-|.++||+|+|||++|+.+++.. ...| +.+... +++... -..+...+...+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL~sk~-----------vGeSEr~ir~iF~k 522 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----ELFSKY-----------VGESERAIREVFRK 522 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HHHHHh-----------cCchHHHHHHHHHH
Confidence 356889999999999999999999987 3333 333221 222111 11222222222333
Q ss_pred HhCCCceEEEEeCCCCccc-------------ccccccccCCCCCCCcEEEE--ecCchHHHhh-cc---CCCceeecCC
Q 043737 161 NMSNKKFVLLLDHIWELVD-------------LSQVGLPVPCRTSASNKTVF--TARELEVCGQ-ME---AHKSFKVERL 221 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~~ili--TsR~~~~~~~-~~---~~~~~~l~~L 221 (371)
.-+.-++++.||+++.... +..+...+.........++| |-|...+... +. -...+.++.=
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 3334678999999974311 11111222211122223333 5565544222 22 3456788777
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 222 GYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 222 ~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
+.+.-.++|+.++.+.....+-+ ..+|++.+.|.-
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~S 637 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVD----LEELAQATEGYS 637 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCcccc----HHHHHHHhccCC
Confidence 78888889999987766555444 455666666653
No 160
>PRK07261 topology modulation protein; Provisional
Probab=97.82 E-value=7e-05 Score=61.89 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCC
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSN 164 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 164 (371)
.|+|+|++|+||||||+++........-+.+.+.|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58899999999999999998775211223444444211 1222334455555555655
Q ss_pred CceEEEEeCCC
Q 043737 165 KKFVLLLDHIW 175 (371)
Q Consensus 165 ~~~LlVlDdv~ 175 (371)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 55 6778764
No 161
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.80 E-value=0.00015 Score=73.77 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
....+|.+...++|.+++.. ....++.++|++|+||||+++.++..+ ...|- -++++...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 35589999999999888762 245689999999999999999999876 33332 2333333232222111
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccc------cccccc-------------cCC-CCCCC
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDL------SQVGLP-------------VPC-RTSAS 194 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~------~~~~~~-------------l~~-~~~~~ 194 (371)
- .......++.....+.. ....+-+++||+++....- ..+... +.. ..-.+
T Consensus 395 ~--------~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 R--------RTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred h--------hccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1 01111122233333332 2223447899999754221 111110 100 11133
Q ss_pred cEEEEecCchHHHh-hccCCCceeecCCChHHHHHHHHHHhC
Q 043737 195 NKTVFTARELEVCG-QMEAHKSFKVERLGYEDAWKLFEEKVG 235 (371)
Q Consensus 195 ~~iliTsR~~~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~ 235 (371)
..+|.|+....+.. ..+....+.+.+++.++-.++..+.+.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 34444554332211 123346789999999999888877763
No 162
>PRK06526 transposase; Provisional
Probab=97.80 E-value=2.6e-05 Score=68.56 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+.|+|++|+|||+||..++...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45679999999999999999998886
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=0.00031 Score=72.67 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=44.8
Q ss_pred CCccccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 61 PPTVVGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...++|.+..++.+...+... ....+.++|++|+|||++|+.++.... ......+.++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~ 633 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSE 633 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 456899999999999988641 134688999999999999999998872 2223344455443
No 164
>PRK04132 replication factor C small subunit; Provisional
Probab=97.79 E-value=0.00041 Score=70.44 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=94.8
Q ss_pred EEc--CCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCC
Q 043737 88 LYG--MGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNK 165 (371)
Q Consensus 88 I~G--~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 165 (371)
+.| |.++||||+|..+++++. ....-..++-++++...+.+.+- ++...+....+. -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~----------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELF-GENWRHNFLELNASDERGINVIR-EKVKEFARTKPI----------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc----------------CCCC
Confidence 347 889999999999999872 22112356777777655554333 333332211100 0123
Q ss_pred ceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCc-hHHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCC
Q 043737 166 KFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARE-LEVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDS 241 (371)
Q Consensus 166 ~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~-~~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~ 241 (371)
.-++|||+++... ....+...+. .....+++|+++.+ ..+. +..+....+.+.+++.++....+...+.......
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4699999998764 3333444443 33455666655544 3332 2234467899999999999988887765433222
Q ss_pred CCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 242 HPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 242 ~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
+ ++.+..|++.++|.+...-.+
T Consensus 710 ~---~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 710 T---EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 456899999999988544333
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.79 E-value=8.5e-05 Score=67.72 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
....+.++|+.|+|||.||..+++.+. .....++|+++ .+++..+...-. . ........ .+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~------~~l~~~l~~~~~-~----~~~~~~~~----~~~ 243 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA------DELIEILREIRF-N----NDKELEEV----YDL 243 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH------HHHHHHHHHHHh-c----cchhHHHH----HHH
Confidence 347899999999999999999999883 22235666644 334444433211 0 11111111 223
Q ss_pred hCCCceEEEEeCCCCc--ccc--cccccccCCCCCCCcEEEEecCc
Q 043737 162 MSNKKFVLLLDHIWEL--VDL--SQVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~--~~~--~~~~~~l~~~~~~~~~iliTsR~ 203 (371)
+.+- =||||||+... ..+ +.+...+......+..+||||..
T Consensus 244 l~~~-DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 244 LINC-DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred hccC-CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3322 38999999533 222 22222222122334568888864
No 166
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.78 E-value=0.00015 Score=62.93 Aligned_cols=88 Identities=22% Similarity=0.230 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH--------hccCCCCCCcCCHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK--------INLFNESWNSRSLQE 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~--------l~~~~~~~~~~~~~~ 153 (371)
...++.|+|++|+|||+++.+++.... .....++|++.. ..+...+. ++... +..... .......+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEP-SSFEEQSE 95 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeC-CCHHHHHH
Confidence 356999999999999999999998762 234578899887 44443332 22221 111110 01111122
Q ss_pred HHHHHHHHhCCCceEEEEeCCC
Q 043737 154 KSQDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 154 ~~~~l~~~l~~~~~LlVlDdv~ 175 (371)
.+..+...+..+.-++|+|.+.
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCcH
Confidence 3334444444556699999984
No 167
>PHA00729 NTP-binding motif containing protein
Probab=97.76 E-value=0.00019 Score=61.31 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 73 RVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 73 ~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+...+.+.....|+|+|.+|+||||||..+++.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555656666789999999999999999999886
No 168
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.76 E-value=0.0001 Score=64.31 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCC
Q 043737 70 TFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWN 147 (371)
Q Consensus 70 ~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~ 147 (371)
.+..+.++..+ .....+.++|.+|+|||+||..+++.+. .....+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444432 2235789999999999999999999983 2233556653 34555554443310 1
Q ss_pred cCCHHHHHHHHHHHhCCCceEEEEeCCCC
Q 043737 148 SRSLQEKSQDIVKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 176 (371)
..+.. .+.+.+.+ .=+|||||+..
T Consensus 150 ~~~~~----~~l~~l~~-~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLSN-VDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhcc-CCEEEEeCCCC
Confidence 11222 23333443 33899999964
No 169
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00057 Score=62.41 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=40.0
Q ss_pred CceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCch-HHHhh-ccCCCceeecCCChHHHHHHHHHH
Q 043737 165 KKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTAREL-EVCGQ-MEAHKSFKVERLGYEDAWKLFEEK 233 (371)
Q Consensus 165 ~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~ea~~ll~~~ 233 (371)
++-++|+|+++... ....+...+. ....++.+|++|.+. .+... .+....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34466778887542 2222323332 222355566666653 33322 244577899999999999998764
No 170
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00052 Score=65.61 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
...-|.+|||+|+|||-||+++++.. +. -|+++... +++...... .+..++.+.++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~-----NFisVKGP----ELlNkYVGE------------SErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GA-----NFISVKGP----ELLNKYVGE------------SERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cC-----ceEeecCH----HHHHHHhhh------------HHHHHHHHHHH
Confidence 45678999999999999999999997 33 34555442 333332211 12334444444
Q ss_pred h-CCCceEEEEeCCCCccc-------------ccccccccC-CCCCCCcEEEE-ecCchHHHhh-cc---CCCceeecCC
Q 043737 162 M-SNKKFVLLLDHIWELVD-------------LSQVGLPVP-CRTSASNKTVF-TARELEVCGQ-ME---AHKSFKVERL 221 (371)
Q Consensus 162 l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~-~~~~~~~~ili-TsR~~~~~~~-~~---~~~~~~l~~L 221 (371)
. .+-+|+|.||+++.... +.++...+. .....|.-||- |.|...+-.. +. -.....++.=
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 4 36799999999974311 122222222 12344544554 5555433222 22 2345677777
Q ss_pred ChHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 222 GYEDAWKLFEEKVG--KEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 222 ~~~ea~~ll~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
+.+|-.++++.... +.....+-++.+++.. .+|.|..
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888889988887 3334444455444432 2344543
No 171
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00083 Score=66.62 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=98.6
Q ss_pred Cccccchh---HHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQS---TFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~---~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.++.|-++ |+.++++.|.+. -++-+.|+||+|+|||-||++++-.. .+-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH----
Confidence 34677654 556667777651 35678999999999999999999886 3455555542
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc-----------------ccccccccCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD-----------------LSQVGLPVPCRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~ 191 (371)
++. +.+.. .. ...++.+.... .+.++++.+|+++...- ++++........
T Consensus 379 EFv----E~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 EFV----EMFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred HHH----HHhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 222 22111 01 12223333333 35789999999874311 222222222112
Q ss_pred CCCcEEEE-ecCchHH-Hhh-cc---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHH
Q 043737 192 SASNKTVF-TARELEV-CGQ-ME---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLA 262 (371)
Q Consensus 192 ~~~~~ili-TsR~~~~-~~~-~~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 262 (371)
..+..|++ +|...++ ... +. -...+.++.=+...-.++|.-++...... .+..++.+ |+..+-|++=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 22223333 3433322 111 11 23467777778888888898888765532 34445566 88888888754
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00022 Score=62.74 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC
Q 043737 67 LQSTFDRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES 145 (371)
Q Consensus 67 R~~~~~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~ 145 (371)
+...+..+.+.... ++..-+.++|++|+|||.||..+.+++. +. --.+.++ +..+++..+......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~-g~sv~f~------~~~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KA-GISVLFI------TAPDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--Hc-CCeEEEE------EHHHHHHHHHHHHhc----
Confidence 44444444333211 3667899999999999999999999982 22 2345555 345666666665532
Q ss_pred CCcCCHHHHHHHHHHHhCCCceEEEEeCCC
Q 043737 146 WNSRSLQEKSQDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 175 (371)
. .....+...+..- =||||||+-
T Consensus 155 ---~---~~~~~l~~~l~~~-dlLIiDDlG 177 (254)
T COG1484 155 ---G---RLEEKLLRELKKV-DLLIIDDIG 177 (254)
T ss_pred ---C---chHHHHHHHhhcC-CEEEEeccc
Confidence 1 1112222222222 299999995
No 173
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00071 Score=65.83 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
.-|.++|++|+|||-||.+++... ..-++++... +++.... | .+ ++.++.+..+.+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~KyI---G--------aS-Eq~vR~lF~rA~ 757 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLSKYI---G--------AS-EQNVRDLFERAQ 757 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHHHHh---c--------cc-HHHHHHHHHHhh
Confidence 468899999999999999998886 2345666543 2222221 1 11 334444444443
Q ss_pred -CCceEEEEeCCCCccc-------------ccccccccCC-CCCCCcEEEE-ecCchHHHhhc-cCC---CceeecCCCh
Q 043737 164 -NKKFVLLLDHIWELVD-------------LSQVGLPVPC-RTSASNKTVF-TARELEVCGQM-EAH---KSFKVERLGY 223 (371)
Q Consensus 164 -~~~~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~~~~ili-TsR~~~~~~~~-~~~---~~~~l~~L~~ 223 (371)
-++|+|.||+++...- ..++...+.. ..-.|.-|+- |||...+...+ .++ +.+.-+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 5899999999975411 2222222221 2233544443 77775442221 222 2333444556
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHH
Q 043737 224 EDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLA 262 (371)
Q Consensus 224 ~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 262 (371)
.+-.+.|+............+ .+.++.+++|..-|
T Consensus 838 ~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 677777776654333222222 67788888887644
No 174
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.72 E-value=5.2e-05 Score=61.85 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL 126 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 126 (371)
++.|+|++|+|||+++..++... ......++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36899999999999999999887 2344567888776543
No 175
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.72 E-value=2.9e-05 Score=61.76 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 65 VGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
||+...++++.+.+.. .....|.|+|+.|+||+++|+.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777788888777764 456788999999999999999887765
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.71 E-value=0.00063 Score=69.34 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHHhc------C---CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME------E---QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~------~---~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.+..++.+...+.. + ....+.++||+|+|||+||+.+++.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 35678999999998888763 1 12357899999999999999999887
No 177
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.70 E-value=0.0025 Score=57.92 Aligned_cols=49 Identities=29% Similarity=0.281 Sum_probs=36.2
Q ss_pred ceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Q 043737 215 SFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLAL 263 (371)
Q Consensus 215 ~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 263 (371)
++++++++.+|+..++.-.............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877655443332344556777777779999755
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.70 E-value=0.00061 Score=70.36 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcC-------C--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEE-------Q--MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~-------~--~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+..++.+...+... + ...+.++|+.|+|||+||+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999988887631 1 1468899999999999999999876
No 179
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.69 E-value=0.00027 Score=68.34 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=43.5
Q ss_pred CccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 62 PTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
..++-..+.++++..||.+ ...+++.|+||+|+||||.++.+++.+ .++.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4456667788999999875 235799999999999999999999887 455666764
No 180
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.69 E-value=0.00018 Score=74.04 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhc--------C-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME--------E-QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~--------~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.+..++.+.+.+.. . ...++.++||+|+|||.||+.+++.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888753 1 12468899999999999999998887
No 181
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.68 E-value=0.00018 Score=61.66 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH-------hccCCCCCCcCCHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK-------INLFNESWNSRSLQEK 154 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~~~~~~ 154 (371)
...++.|+|++|+|||+++.+++.... .....++|++... .+...+.+..... +..... .........
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEV-FDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEEC-CCHHHHHHH
Confidence 357999999999999999999988762 3346789998875 4544444332211 111000 011112223
Q ss_pred HHHHHHHhCC-CceEEEEeCCC
Q 043737 155 SQDIVKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 155 ~~~l~~~l~~-~~~LlVlDdv~ 175 (371)
...+.+.+.. +.-++|+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4444444443 45689999985
No 182
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.68 E-value=0.0002 Score=62.46 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC----CCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPN----DFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRS 150 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~ 150 (371)
...++.|+|++|+|||+|+.+++.... ... ....++|++.....+...+.. ++...+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~-~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQ-LPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHee-CccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 457999999999999999999986641 111 135899998877655444433 33332221100 01112
Q ss_pred HH---HHHHHHHHHhCC--CceEEEEeCCC
Q 043737 151 LQ---EKSQDIVKNMSN--KKFVLLLDHIW 175 (371)
Q Consensus 151 ~~---~~~~~l~~~l~~--~~~LlVlDdv~ 175 (371)
.. .....+...+.. +.-++|+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 233444444433 45699999985
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.67 E-value=6.1e-05 Score=68.64 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=40.8
Q ss_pred ccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 63 TVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
.++|-++.++++++++.. ...+++.|+|++|+||||||..+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999865 2457899999999999999999999983
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00037 Score=63.97 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=80.8
Q ss_pred ccccchhHHHHHHHHHhc-CCce-EEEEEcCCCCcHHHHHHHHHhhccCCCC------------------CCCeEEEEEe
Q 043737 63 TVVGLQSTFDRVWRCLME-EQMG-IVGLYGMGEVGKTTLLTQINKKFLHTPN------------------DFDFVIWVVA 122 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 122 (371)
.++|-+....++..+..+ ++.+ .+.++|++|+||||+|..+++.+..... .++.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777788888888774 3344 5999999999999999999998731110 1234444444
Q ss_pred CCcCC---HHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEE
Q 043737 123 SKDLQ---LEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 123 ~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~i 197 (371)
+.... ..+..+.+......... .++.-++++|+++.... ...+...+. .....+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEE
Confidence 43333 23344444444332211 24556999999986533 233333333 44456666
Q ss_pred EEecCc-hHHHh-hccCCCceeecCCC
Q 043737 198 VFTARE-LEVCG-QMEAHKSFKVERLG 222 (371)
Q Consensus 198 liTsR~-~~~~~-~~~~~~~~~l~~L~ 222 (371)
+++|.. ..+.. ..+....+.+.+.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCch
Confidence 666653 33322 22334566776633
No 185
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00015 Score=65.58 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---CCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---WNSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 158 (371)
..+++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+..++..... ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999888762 233567788776654432 34444432111 0223455555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 043737 159 VKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~ 175 (371)
...++ +..-++|+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 355699999985
No 186
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.0014 Score=56.26 Aligned_cols=171 Identities=12% Similarity=0.188 Sum_probs=92.4
Q ss_pred CccccchhHHHH---HHHHHhcC------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHH
Q 043737 62 PTVVGLQSTFDR---VWRCLMEE------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 62 ~~~vGR~~~~~~---l~~~L~~~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 132 (371)
+..||.++.... |+..|.+. .++.|..+|++|.|||.+|+.+++.. +-. ++.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp-----~l~vka----t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVP-----LLLVKA----TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCc-----eEEech----HHH-
Confidence 456887765433 55666542 46799999999999999999999887 222 222221 111
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcc----------c----ccccccccC-CCCCCCcE
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELV----------D----LSQVGLPVP-CRTSASNK 196 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~----~~~~~~~l~-~~~~~~~~ 196 (371)
|.... .+-...+..+.+.. +.-+|++.+|+++-.. + .+.+...+. ...+.|..
T Consensus 188 --iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111 11112222333322 3478999999986321 1 111111111 12344544
Q ss_pred EEEecCchHHH-hhc--cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 197 TVFTARELEVC-GQM--EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 197 iliTsR~~~~~-~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.|-.|-...+. ... .-.+.|+..--+.+|-.++++..+..-....+.. .+.++++++|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 44444433332 111 1224567777788888888888875544333333 566777777753
No 187
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00027 Score=68.62 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL--QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIV 159 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 159 (371)
....|.|.|+.|+|||+||+++++... ++..-.+.+++++.-. ..+.+.+.+-.. +.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-------------------fs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-------------------FS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH-------------------HH
Confidence 346889999999999999999999984 4555566666665422 233333222222 22
Q ss_pred HHhCCCceEEEEeCCCCccc-------------------ccccccccCCCCCCCcEEEEecCchHH-----HhhccCCCc
Q 043737 160 KNMSNKKFVLLLDHIWELVD-------------------LSQVGLPVPCRTSASNKTVFTARELEV-----CGQMEAHKS 215 (371)
Q Consensus 160 ~~l~~~~~LlVlDdv~~~~~-------------------~~~~~~~l~~~~~~~~~iliTsR~~~~-----~~~~~~~~~ 215 (371)
+.+.-.+-++||||++.... +.++...+. ..+....+|.|.....- ....-...+
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~ 567 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIV 567 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-ccCcEEEEEEechhhhhcChhhcCccceEEE
Confidence 33445677999999974311 111111111 12222234445444221 111112235
Q ss_pred eeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHHH
Q 043737 216 FKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITVG 267 (371)
Q Consensus 216 ~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a 267 (371)
..++++...+-.++++.......... .......+..+|+|. |.-+.++.
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHHH
Confidence 68889998888888877664332111 122345588888885 66565554
No 188
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.63 E-value=0.00028 Score=68.98 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=39.2
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+..++.+...+.......|.|+|++|+|||++|+.+.+..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999988766556678999999999999999987654
No 189
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.63 E-value=0.00015 Score=65.54 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++-|+|++|+||||||.+++... ...-..++|++.....++. .+..++...... ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45799999999999999999988776 2233567888876655432 333443321110 223455555555
Q ss_pred HHHhCC-CceEEEEeCCC
Q 043737 159 VKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~~-~~~LlVlDdv~ 175 (371)
...++. ..-++|+|.+.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555543 45699999984
No 190
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.62 E-value=0.00069 Score=58.72 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~ 151 (371)
...++.|+|++|+|||+|+.+++....... ..-..++|++.....+...+. .+.......... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 356999999999999999999987752110 012578899887655554443 233322211000 012344
Q ss_pred HHHHHHHHHHhC----CCceEEEEeCCC
Q 043737 152 QEKSQDIVKNMS----NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~~~~~~l~~~l~----~~~~LlVlDdv~ 175 (371)
++....+..... .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 555555444432 344599999985
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=0.00011 Score=61.96 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=62.1
Q ss_pred cchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC---------C----HHHHH
Q 043737 66 GLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL---------Q----LEQIQ 132 (371)
Q Consensus 66 GR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~---------~----~~~~~ 132 (371)
.+..+-...+++|. ...++.+.|++|+|||.||...+-+. -....++.++++.-.-.. + ....+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455566677776 45599999999999999999988765 234788888887532110 0 11111
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHH------HHHhCCC---ceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEec
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDI------VKNMSNK---KFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTA 201 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTs 201 (371)
.-+...+.... .....+.....= ...++++ ..++|+|++++.. ++..+ +. +.+.+|+++++.
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lT-R~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LT-RIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HT-TB-TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---Hc-ccCCCcEEEEec
Confidence 22222221111 111111111100 0123443 5699999997653 34433 33 566899999987
Q ss_pred Cc
Q 043737 202 RE 203 (371)
Q Consensus 202 R~ 203 (371)
-.
T Consensus 154 D~ 155 (205)
T PF02562_consen 154 DP 155 (205)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=97.61 E-value=5e-05 Score=67.12 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+.|+|++|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998775
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.59 E-value=0.00017 Score=59.85 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=42.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
+....+.++|++|+|||.||..+++... . .-..+.|++ ..+++..+-..- ........ .+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~--~-~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~~----~~ 104 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAI--R-KGYSVLFIT------ASDLLDELKQSR-------SDGSYEEL----LK 104 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHH--H-TT--EEEEE------HHHHHHHHHCCH-------CCTTHCHH----HH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhc--c-CCcceeEee------cCceeccccccc-------cccchhhh----cC
Confidence 3456899999999999999999998873 2 223456664 345555543221 11222222 22
Q ss_pred HhCCCceEEEEeCCC
Q 043737 161 NMSNKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~ 175 (371)
.+.+- =||||||+.
T Consensus 105 ~l~~~-dlLilDDlG 118 (178)
T PF01695_consen 105 RLKRV-DLLILDDLG 118 (178)
T ss_dssp HHHTS-SCEEEETCT
T ss_pred ccccc-cEecccccc
Confidence 33332 388999995
No 194
>PRK09354 recA recombinase A; Provisional
Probab=97.59 E-value=0.00021 Score=65.14 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---CCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---WNSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 158 (371)
..+++-|+|++|+|||||+.+++... ...-..++|++....++.. .+..++..... ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999998776 2334578899887765542 34444432111 0223455555555
Q ss_pred HHHhCC-CceEEEEeCCC
Q 043737 159 VKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~~-~~~LlVlDdv~ 175 (371)
...++. ..-++|+|.+.
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 555543 45699999985
No 195
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.58 E-value=0.00071 Score=58.33 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
...++.|+|++|+|||+|+.+++.... ..-..++|++....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~ 58 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGL 58 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCC
Confidence 457899999999999999999998872 23346788876543
No 196
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=6.3e-05 Score=58.26 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 197
>PTZ00494 tuzin-like protein; Provisional
Probab=97.55 E-value=0.016 Score=54.17 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred hchHHHHHHHHHHHHHhhhccCCCCcccCCCCCCccccCCCCCccccchhHHHHHHHHHhc---CCceEEEEEcCCCCcH
Q 043737 20 GYKIGRKVFKTLQQVQGLTNEGDFKEVPQPVPENLVDERPLPPTVVGLQSTFDRVWRCLME---EQMGIVGLYGMGEVGK 96 (371)
Q Consensus 20 r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~---~~~~~v~I~G~~GiGK 96 (371)
.|+-.++--++...++.+.+.-+.. +......+..+..+|.|+.+-..+.+.|.+ ..++++++.|.-|.||
T Consensus 335 nYr~qQRs~Ql~~Av~TLsk~~~~~------~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGK 408 (664)
T PTZ00494 335 AYRRQQRGHQLRTAIETLSKAARPR------KEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGR 408 (664)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCC------cccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCc
Confidence 3444555556666666666653211 111222234457899999998888887765 4689999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHH---HHHhCCCceEEEEeC
Q 043737 97 TTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDI---VKNMSNKKFVLLLDH 173 (371)
Q Consensus 97 TtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l---~~~l~~~~~LlVlDd 173 (371)
|+|.+...... . -..+++++... ++-++.+.+.++.+.-+.-.+-.+-..+.. .....++.-+||+-=
T Consensus 409 SslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL 479 (664)
T PTZ00494 409 CVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL 479 (664)
T ss_pred hHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 99999988775 1 23567777654 455677788887654321111122222222 122345555666532
Q ss_pred CCCccccccc---ccccCCCCCCCcEEEEecCchHHHh---hccCCCceeecCCChHHHHHHHHHHh
Q 043737 174 IWELVDLSQV---GLPVPCRTSASNKTVFTARELEVCG---QMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 174 v~~~~~~~~~---~~~l~~~~~~~~~iliTsR~~~~~~---~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
= +..++..+ ...+. ....-|+|++----+.+.. .+..-..|.+++++.++|.++-+..+
T Consensus 480 R-EGssL~RVYnE~vaLa-cDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 480 R-EGSDLGRVYGEVVSLV-SDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred c-cCCcHHHHHHHHHHHH-ccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 2 11221111 01111 2334456665332222211 11223467899999999999988765
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.53 E-value=0.0005 Score=62.19 Aligned_cols=116 Identities=20% Similarity=0.183 Sum_probs=64.6
Q ss_pred cchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 66 GLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 66 GR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
+|...+....+++.+ ...+-+.|+|+.|+|||.||..+++.+. ... ..+.++++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555543 1346899999999999999999999983 222 23455543 3555555554421
Q ss_pred CCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCC--Ccccccc--ccc-ccCCCCCCCcEEEEecC
Q 043737 142 FNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIW--ELVDLSQ--VGL-PVPCRTSASNKTVFTAR 202 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~--~~~-~l~~~~~~~~~iliTsR 202 (371)
.+.. ...+.+.+ .=||||||+. ....|.. +.. .+......+..++|||-
T Consensus 206 -------~~~~----~~l~~l~~-~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVK----EKIDAVKE-APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHH----HHHHHhcC-CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1122 22233333 3499999995 2333432 211 22211124556777775
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00052 Score=68.47 Aligned_cols=155 Identities=16% Similarity=0.223 Sum_probs=90.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCC--CCC--CCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHT--PND--FDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~--f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+..+||++|+.++++.|.......-.++|.+|+|||+++.-++.+.-.. ... ...++-++++ .+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g----------~Lv- 238 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG----------SLV- 238 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH----------HHh-
Confidence 5579999999999999986544455678999999999999988887211 110 0111111111 000
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc--------ccccccccCCCCCCC-cEEEEecCchHHH
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD--------LSQVGLPVPCRTSAS-NKTVFTARELEVC 207 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~~~~-~~iliTsR~~~~~ 207 (371)
....-....++.++.+.+.++ ..+++|++|.++..-- .+.-...-| ....| .++|-.|.....-
T Consensus 239 -----AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP-aLARGeL~~IGATT~~EYR 312 (786)
T COG0542 239 -----AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP-ALARGELRCIGATTLDEYR 312 (786)
T ss_pred -----ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH-HHhcCCeEEEEeccHHHHH
Confidence 011133445556666665554 3589999999975411 222122222 22223 3445444333321
Q ss_pred h-------hccCCCceeecCCChHHHHHHHHHH
Q 043737 208 G-------QMEAHKSFKVERLGYEDAWKLFEEK 233 (371)
Q Consensus 208 ~-------~~~~~~~~~l~~L~~~ea~~ll~~~ 233 (371)
. .-...+.+.+..-+.+++...++-.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 1134578899999999999988654
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.52 E-value=0.00033 Score=68.26 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+++.++|++|.||||||.-++++. .| .++=++++...+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 35799999999999999999999886 12 4778888888888888777777664321 1
Q ss_pred h--CCCceEEEEeCCCCc
Q 043737 162 M--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 162 l--~~~~~LlVlDdv~~~ 177 (371)
+ .+++.-||+|+++-.
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 267889999999754
No 201
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.51 E-value=0.0002 Score=65.13 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++.++|||++|+|||.+|+.++..+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999998
No 202
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.51 E-value=0.00056 Score=70.61 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcC-------C--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEE-------Q--MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~-------~--~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.+..++.+...+... + ...+.++||.|+|||+||+.+++.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 466899999999998887531 1 2356789999999999999999887
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00022 Score=71.11 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=65.5
Q ss_pred CCccccchhHHHHHHHHHhc------C---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME------E---QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~------~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
...++|-++.++.+.+++.. + ........||.|+|||-||++++..+ .+.-+..+-++.+. .
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSE------y 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSE------Y 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHH------H
Confidence 46689999999999999864 1 23466779999999999999999998 32223444444333 2
Q ss_pred HH-HHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCce-EEEEeCCCCc
Q 043737 132 QG-SIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKF-VLLLDHIWEL 177 (371)
Q Consensus 132 ~~-~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 177 (371)
.. .-.+.|-..++..-..+. .-.+-+..+.+|| ++.||+++..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 22 122233233322222222 2334445556776 9999999854
No 204
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.011 Score=58.47 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=59.7
Q ss_pred CccccchhHHHHHHHHHhc---------C---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME---------E---QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~---------~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
+++=|-++...+|.+-+.- . +..-|.++|++|+|||-||++++-.+ ..-|+++...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 3455667777777766531 1 34578999999999999999999887 2455666543
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCc
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 177 (371)
+++..... .+ ++.++.+.++.+ ..+|+|.||+++..
T Consensus 740 ELLNMYVG-----------qS-E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYVG-----------QS-EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHhc-----------ch-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 33333221 12 333444444443 58999999999854
No 205
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.00018 Score=62.23 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 66 GLQSTFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 66 GR~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|.+.+++|.+.+.. +...+|+|.|.+|+||||||+++++.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888887753 467799999999999999999999987
No 206
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.0036 Score=54.40 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=118.0
Q ss_pred ccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCc--------------
Q 043737 63 TVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKD-------------- 125 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~-------------- 125 (371)
.+.++++.-..+......++.+-+.++||+|.||-|.+..+.+++-... -.-+..-|...+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 3667777777777766556789999999999999999988888872111 11122333332221
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCce-EEEEeCCCCc--ccccccccccCCCCCCCc
Q 043737 126 -------LQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKF-VLLLDHIWEL--VDLSQVGLPVPCRTSASN 195 (371)
Q Consensus 126 -------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~~~ 195 (371)
....-+.++++..+....+- +....+++ ++|+-.++.. +....+..... .-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCc
Confidence 01122333333333221100 00012344 6677666543 11111211111 223467
Q ss_pred EEEEecCc--hHHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCC
Q 043737 196 KTVFTARE--LEVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASK 273 (371)
Q Consensus 196 ~iliTsR~--~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 273 (371)
++|+..-+ +-+.+.-+..-.+.++..+++|....+.+...+.+...+ .+++.+|+++++|+-.-.-++...++-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 77764332 122222233346789999999999999999877765554 5679999999999754333333333211
Q ss_pred ----------CChhHHHHHHHHHhcccc
Q 043737 274 ----------KTPREWEHAIEVLRSSAY 291 (371)
Q Consensus 274 ----------~~~~~~~~~l~~l~~~~~ 291 (371)
-..-+|+-.+.++.....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~ 263 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVIL 263 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHH
Confidence 123479888877766543
No 207
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.45 E-value=0.0004 Score=56.08 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC---cCCHHHHHHHHHHHhccC--CC--CCCcCCHH----
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK---DLQLEQIQGSIAKKINLF--NE--SWNSRSLQ---- 152 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~l~~~l~~~--~~--~~~~~~~~---- 152 (371)
..|-|++..|.||||+|...+-+.. .+-..+.++.+-+ ......++..+- .+... .. .+...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4788888889999999998887762 2233455544322 334444444431 11110 00 00111111
Q ss_pred ---HHHHHHHHHhCCCc-eEEEEeCCCCc-----ccccccccccCCCCCCCcEEEEecCchH
Q 043737 153 ---EKSQDIVKNMSNKK-FVLLLDHIWEL-----VDLSQVGLPVPCRTSASNKTVFTARELE 205 (371)
Q Consensus 153 ---~~~~~l~~~l~~~~-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~~~iliTsR~~~ 205 (371)
...+..++.+.... =|+|||++-.. .+.+.+...+. ....+..+|+|.|+.+
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 12333444444444 49999998533 22333444444 4556779999999843
No 208
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.44 E-value=0.00074 Score=59.60 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
...+.=|+|++|+|||+|+.+++-.... ....-..++|++....++...+.+ +++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhcc
Confidence 3458889999999999999988755411 122345799999888887777654 45544
No 209
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.40 E-value=0.0055 Score=61.49 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.+-|.|+|++|+|||++|+.++... ..+| +.++.+ ++... . ...........+....
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~~~----~-------~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFVEM----F-------VGVGASRVRDMFEQAK 241 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhHHh----h-------hcccHHHHHHHHHHHH
Confidence 3459999999999999999998887 3232 222211 11110 0 0111112222222233
Q ss_pred CCCceEEEEeCCCCccc----------------ccccccccC-CCCCCCcEEEEecCchHH-Hhhc----cCCCceeecC
Q 043737 163 SNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRTSASNKTVFTARELEV-CGQM----EAHKSFKVER 220 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~~~~~iliTsR~~~~-~~~~----~~~~~~~l~~ 220 (371)
...+++|+||+++.... +..+...+. ...+.+..+|.||..... ...+ .-...+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 45788999999975411 111111111 012334444445555432 1111 1235678888
Q ss_pred CChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043737 221 LGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL 259 (371)
Q Consensus 221 L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 259 (371)
-+.++-.+++...+.......+.+ ...+++.+.|.
T Consensus 322 Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 322 PDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 888888888888776544322222 34566666663
No 210
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0012 Score=60.46 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|-|.+|+|||||..+++.++. ... .++|++-... ..+ .+--+.+++....+. ...+.++....+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHH
Confidence 346999999999999999999999983 222 6788765443 222 233455666543321 233334333333
Q ss_pred HHHhCCCceEEEEeCCCCc
Q 043737 159 VKNMSNKKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~~ 177 (371)
.+ .++-++|+|.++..
T Consensus 165 ~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 165 EQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred Hh---cCCCEEEEecccee
Confidence 33 57889999999643
No 211
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.39 E-value=0.0013 Score=59.77 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC-------CcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT---PNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW-------NSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~ 151 (371)
...++-|+|++|+|||+|+.+++-..... ...-..++|++....+++..+.+ ++..++...... ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45688899999999999999887543110 12234799999888777777654 455555432110 11233
Q ss_pred HHHH---HHHHHHhC-CCceEEEEeCCC
Q 043737 152 QEKS---QDIVKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~~~~---~~l~~~l~-~~~~LlVlDdv~ 175 (371)
++.. ..+...+. .+.-|+|+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 33333333 344589999874
No 212
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0024 Score=62.14 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=90.2
Q ss_pred CccccchhH---HHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQST---FDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~---~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.-|.++. +.++++.|.+. -++-|.++||+|+|||.||++++... .-.| .+.+..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPF-----f~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCc-----eeccch----
Confidence 456787654 45556666642 14578899999999999999999887 2222 222211
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc----------------cccccccccCCCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV----------------DLSQVGLPVPCRTSA 193 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~~~~ 193 (371)
++. +.+ ...........+.+..++-++++++|.++... .+.++..........
T Consensus 218 ~FV----emf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 DFV----EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhh----hhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 111 111 11111222333444445678999999987431 222222222211111
Q ss_pred CcEEEE--ecCchHHHhh-c---cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 194 SNKTVF--TARELEVCGQ-M---EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 194 ~~~ili--TsR~~~~~~~-~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
...|++ |.|..-+... + .-...+.++.-+...-.+.++-++........-+ ...|++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCccc
Confidence 223443 5555333111 1 2234455665565666666776665544333333 3447777777543
No 213
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00074 Score=68.38 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHHHhc--------C-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME--------E-QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~--------~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|-++.++.|...+.. + ....+.++|++|+|||.||+.++..+
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999888762 1 13468899999999999999998887
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.37 E-value=0.0013 Score=57.41 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC----------------
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---------------- 145 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---------------- 145 (371)
...++.|.|++|+|||+||.+++.... ..-..++|++... +..++.+.+. .++.....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 457999999999999999999887651 2345688887765 4455555432 22221000
Q ss_pred ------------CCcCCHHHHHHHHHHHhCC-CceEEEEeCCCC
Q 043737 146 ------------WNSRSLQEKSQDIVKNMSN-KKFVLLLDHIWE 176 (371)
Q Consensus 146 ------------~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 176 (371)
....+.......+.+.+.. +.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123455566666665543 344799999854
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.0012 Score=56.19 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|-+...+.|.+.-.. -....|.+||..|+|||+|++++....
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3478988887777665432 345689999999999999999999887
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.35 E-value=0.0025 Score=60.45 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCC-CcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINLFNESW-NSRSLQEKSQDIV 159 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~l~ 159 (371)
.+.+|.++|+.|+||||++..++..+. . .. ..+..++++.. +...+.+..++..++.+.... ...++........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KG-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cC-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999999998873 2 22 24555554432 233455666677766532211 1233444444444
Q ss_pred HHhCCCceEEEEeCCC
Q 043737 160 KNMSNKKFVLLLDHIW 175 (371)
Q Consensus 160 ~~l~~~~~LlVlDdv~ 175 (371)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 444443 467777763
No 217
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.33 E-value=0.001 Score=55.00 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCC-CCcCCHHHHHH-HHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNES-WNSRSLQEKSQ-DIVKN 161 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~-~l~~~ 161 (371)
++.+.|++|+||||++..++..+. ..-..+..++..... ...+.+...+...+..... ....++..... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998873 222345555554322 2334444444444432111 12234444432 33333
Q ss_pred hCCCceEEEEeCCCC
Q 043737 162 MSNKKFVLLLDHIWE 176 (371)
Q Consensus 162 l~~~~~LlVlDdv~~ 176 (371)
.....-++|+|....
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 344444666887643
No 218
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.014 Score=52.53 Aligned_cols=167 Identities=13% Similarity=0.025 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccC-------CCCCCCeEEEEEe-CCcCCHHHHHHHHHHHhcc
Q 043737 71 FDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLH-------TPNDFDFVIWVVA-SKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 71 ~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l~~ 141 (371)
++.+.+.+.+++ ..+..++|+.|+||+++|..+++.+-. ...+.+.+.++.. +.....+++. ++...+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445556665544 467779999999999999999888611 1112223333321 1222233322 33333322
Q ss_pred CCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEE-ecCchHHHh-hccCCCcee
Q 043737 142 FNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVF-TARELEVCG-QMEAHKSFK 217 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ili-TsR~~~~~~-~~~~~~~~~ 217 (371)
..- -.+.+-++|+|+++.... ...+...+. ....++.+|+ |+....+.. ..+....++
T Consensus 84 ~~~-----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SSF-----------------VQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CCc-----------------ccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 110 013556999999976643 334444554 4445555555 544444443 245677899
Q ss_pred ecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHH
Q 043737 218 VERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALIT 265 (371)
Q Consensus 218 l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 265 (371)
+.++++++..+.+... + .+ ++.+..++..++|.=.|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999888764 1 11 12366666677763344444
No 219
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.31 E-value=0.00018 Score=60.92 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=25.9
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 76 RCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 76 ~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+..+..+++.|.|++|+|||+++..+...+
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33334556799999999999999999988877
No 220
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.31 E-value=0.0015 Score=56.97 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC----------------
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---------------- 145 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---------------- 145 (371)
...++.|+|++|+|||+|+.+++.... ..-..++|++... +..++.+.+ ..++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 457999999999999999999976641 2345788888865 345555543 233321110
Q ss_pred --CCcCCHHHHHHHHHHHhCC-CceEEEEeCCC
Q 043737 146 --WNSRSLQEKSQDIVKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 146 --~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 175 (371)
............+.+.+.. ++-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122335566666666654 55699999985
No 221
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.30 E-value=0.00039 Score=58.94 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS 163 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 163 (371)
.++.|.|+.|+||||++..++... .......++..-... +-...... .+ ..... ...+.......++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~---E~~~~~~~-~~-i~q~~-vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPI---EFVHESKR-SL-INQRE-VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCc---cccccCcc-ce-eeecc-cCCCccCHHHHHHHHhc
Confidence 478999999999999999988877 222233333221111 00000000 00 00000 11112234455666666
Q ss_pred CCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHH
Q 043737 164 NKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
..+=++++|++-+.+....... ....|..++.|+-....
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~----~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALT----AAETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHH----HHHcCCEEEEEecCCcH
Confidence 6777999999976554433221 12235557777765543
No 222
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.30 E-value=0.0021 Score=52.78 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe---CC---------------------------------
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA---SK--------------------------------- 124 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~--------------------------------- 124 (371)
.....++|+|++|.|||||.+.++.... .-.+.+|++- +.
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 3456999999999999999999988762 1223344321 00
Q ss_pred ---------cCCHHHHHHHHHHHhccCCCCC----CcCCHHHHHHHHHHHhCCCceEEEEeCC----CCccccccccccc
Q 043737 125 ---------DLQLEQIQGSIAKKINLFNESW----NSRSLQEKSQDIVKNMSNKKFVLLLDHI----WELVDLSQVGLPV 187 (371)
Q Consensus 125 ---------~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~~~~~l 187 (371)
......-..+.+...++..... .-..-++..-.+.+.+-+++-+|+-|+- |....|+-+..+-
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 0012222333333333322110 1112223333444555677889999964 4344444443332
Q ss_pred CCCCCCCcEEEEecCchHHHhhc
Q 043737 188 PCRTSASNKTVFTARELEVCGQM 210 (371)
Q Consensus 188 ~~~~~~~~~iliTsR~~~~~~~~ 210 (371)
. .+..|+.|+++|.+..+...+
T Consensus 182 e-inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 E-INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred H-HhhcCcEEEEEeccHHHHHhc
Confidence 2 567799999999998876654
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.29 E-value=0.00061 Score=56.57 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEE
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWV 120 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 120 (371)
...+|++.|++|+||||+|+.++..+ ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999988 3444555555
No 224
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.29 E-value=0.0014 Score=60.88 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|.|++|+|||||+.+++.... .....++|++... +..++ ..-+..++...... ...+.+...+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 356999999999999999999998872 2234678887643 33332 22234555432221 122333333333
Q ss_pred HHHhCCCceEEEEeCCCC
Q 043737 159 VKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~ 176 (371)
. ..++-++|+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 23567999999854
No 225
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.28 E-value=0.0016 Score=53.26 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEE---EEEeCCcCCHHHHHHHHHHHhccCCC--CCCcCC-------
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVI---WVVASKDLQLEQIQGSIAKKINLFNE--SWNSRS------- 150 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~------- 150 (371)
...|-|++..|.||||.|..++-+.. ...+ .++ |+...........+..+.-.+..... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 46888888899999999998888872 2222 333 33333233444444443111110011 011111
Q ss_pred HHHHHHHHHHHhCCCce-EEEEeCCCCc-----ccccccccccCCCCCCCcEEEEecCch
Q 043737 151 LQEKSQDIVKNMSNKKF-VLLLDHIWEL-----VDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 151 ~~~~~~~l~~~l~~~~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
..+.....++.+...++ |+|||++-.. -+.+.+...+. ....+..+|+|.|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 12234444455555554 9999998532 23334444444 555678999999984
No 226
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0069 Score=54.78 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC
Q 043737 63 TVVGLQSTFDRVWRCLME--------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF 114 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f 114 (371)
.+-|-+...+.+.+...= ...+-|.++||+|.|||-||+.++.+. ...|
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 345556666666555320 245689999999999999999999997 4444
No 227
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.26 E-value=0.0017 Score=59.53 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~ 151 (371)
...++-|+|++|+|||+|+.+++-.... ....-..++|++....+++.++.+ ++..++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4568889999999999999998754311 112235899999988777777654 45555543211 012233
Q ss_pred HHHH---HHHHHHhC-CCceEEEEeCCC
Q 043737 152 QEKS---QDIVKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~~~~---~~l~~~l~-~~~~LlVlDdv~ 175 (371)
++.. ..+...+. .+.-|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 3332 22322332 334588999884
No 228
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.26 E-value=0.0014 Score=55.15 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCC-------CCCeEEEEEeCCc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPN-------DFDFVIWVVASKD 125 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------~f~~~~wv~~~~~ 125 (371)
..++.|.|++|+|||+++.+++........ .-..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 348999999999999999999888743222 2237888887664
No 229
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.25 E-value=0.00036 Score=67.14 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=40.2
Q ss_pred ccccchhHHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLM------EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|-++.+++|++.|. +...+++.++||+|+||||||..+++-+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999883 2466899999999999999999999987
No 230
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.25 E-value=0.00046 Score=61.43 Aligned_cols=87 Identities=23% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHH
Q 043737 73 RVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQ 152 (371)
Q Consensus 73 ~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 152 (371)
.+++.+... .+.|.++|+.|+|||++++.+.+.+. ...+ .+.-++.+...+...+...+-..+..... ....+
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~--~~~gP- 96 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG--RVYGP- 96 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT--EEEEE-
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC--CCCCC-
Confidence 344444444 56789999999999999999988762 2221 24445566554444433222222111000 00000
Q ss_pred HHHHHHHHHhCCCceEEEEeCCC
Q 043737 153 EKSQDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 153 ~~~~~l~~~l~~~~~LlVlDdv~ 175 (371)
-.+++.++.+||+.
T Consensus 97 ---------~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 97 ---------PGGKKLVLFIDDLN 110 (272)
T ss_dssp ---------ESSSEEEEEEETTT
T ss_pred ---------CCCcEEEEEecccC
Confidence 13678899999995
No 231
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.25 E-value=0.0005 Score=65.16 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=39.0
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 56899999999999988554 488999999999999999999876
No 232
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.24 E-value=0.00063 Score=61.22 Aligned_cols=135 Identities=14% Similarity=0.210 Sum_probs=71.4
Q ss_pred ccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE----eCCc---------CCHHHH
Q 043737 65 VGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV----ASKD---------LQLEQI 131 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~----~~~~---------~~~~~~ 131 (371)
-+|..+-.--+++|.++....|.+.|.+|+|||-||..+.-.--..+..|..++-.. +++. ..+..-
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 446666566678888889999999999999999887654332111234454433321 2211 111122
Q ss_pred HHHHHHHhccCCCCCCcCCHHHHHHHHH----------HHhCCC---ceEEEEeCCCCcccccccccccCCCCCCCcEEE
Q 043737 132 QGSIAKKINLFNESWNSRSLQEKSQDIV----------KNMSNK---KFVLLLDHIWELVDLSQVGLPVPCRTSASNKTV 198 (371)
Q Consensus 132 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~~---~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~il 198 (371)
+..+..-+..-... .... ...+..+. .+++++ .-++|+|++++..-- .+...+. ..+.|++|+
T Consensus 307 mq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph-eikTilt-R~G~GsKIV 382 (436)
T COG1875 307 MQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH-ELKTILT-RAGEGSKIV 382 (436)
T ss_pred HHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH-HHHHHHH-hccCCCEEE
Confidence 22222222211111 1111 22333331 123443 459999999765321 1222233 677899999
Q ss_pred EecCc
Q 043737 199 FTARE 203 (371)
Q Consensus 199 iTsR~ 203 (371)
.|.-.
T Consensus 383 l~gd~ 387 (436)
T COG1875 383 LTGDP 387 (436)
T ss_pred EcCCH
Confidence 88754
No 233
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.22 E-value=0.0026 Score=53.77 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcCCHHHHHHHHHHH-hccCCCCCCcCCHHHHHHHHHHHh
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDLQLEQIQGSIAKK-INLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
+|+|.|++|+||||||+.+...+...... ......++.............-... -..........+.+...+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 68999999999999999999998311111 1124444444333222222221111 011112224556666777777666
Q ss_pred CCCceEEE
Q 043737 163 SNKKFVLL 170 (371)
Q Consensus 163 ~~~~~LlV 170 (371)
.++.+-+-
T Consensus 81 ~g~~i~~p 88 (194)
T PF00485_consen 81 NGGSIEIP 88 (194)
T ss_dssp TTSCEEEE
T ss_pred CCCccccc
Confidence 66665443
No 234
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.20 E-value=0.00092 Score=62.96 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCccccchhHHHHHHHHHhc-------C---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME-------E---------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-------~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.+...+.+..++.+ . ..+.+.++|++|+|||+||+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999988888665521 0 23579999999999999999998876
No 235
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0062 Score=53.52 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=87.2
Q ss_pred cccchhHHHHHHHHHhc---------C---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 64 VVGLQSTFDRVWRCLME---------E---QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~---------~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
+-|-+...+.|.++..= + ..+-|.++||+|.|||.||++++-.. . .-|++++.. ++
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSS----DL 202 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSS----DL 202 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehH----HH
Confidence 45666666666555321 1 24689999999999999999998876 1 223344332 22
Q ss_pred HHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc---------ccccc----cccC--CCCCCCc
Q 043737 132 QGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD---------LSQVG----LPVP--CRTSASN 195 (371)
Q Consensus 132 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~---------~~~~~----~~l~--~~~~~~~ 195 (371)
....+ + ..+.++..+.+..+ +++.+|.+|+++.... ...+. .... ...+.|.
T Consensus 203 vSKWm---G---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 203 VSKWM---G---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred HHHHh---c---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 22221 1 12344555555443 6788999999974311 11110 1111 1233454
Q ss_pred EEEEecCchHHHhh-c--cCCCceeecCCChHHHH-HHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 196 KTVFTARELEVCGQ-M--EAHKSFKVERLGYEDAW-KLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 196 ~iliTsR~~~~~~~-~--~~~~~~~l~~L~~~ea~-~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.||-.|..+-+... + .-...|.+ ||....|+ .+|.-+++...- .-.++..+++.+++.|..
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~---~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPH---VLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcc---ccchhhHHHHHhhcCCCC
Confidence 45545554332211 0 11223333 45555554 345555554321 122344677888887754
No 236
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0045 Score=60.34 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+.+.++|++|+|||.||+.++... ..+|-.+ ... +++... -..+.......+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v-----~~~----~l~sk~-----------vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISV-----KGS----ELLSKW-----------VGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEe-----eCH----HHhccc-----------cchHHHHHHHHHHHH
Confidence 34589999999999999999999976 3333222 211 111111 111122222223333
Q ss_pred hCCCceEEEEeCCCCcccc-------------cccccccCC-CCCCCcEEEEecCch-HHHhhc----cCCCceeecCCC
Q 043737 162 MSNKKFVLLLDHIWELVDL-------------SQVGLPVPC-RTSASNKTVFTAREL-EVCGQM----EAHKSFKVERLG 222 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~~~~-------------~~~~~~l~~-~~~~~~~iliTsR~~-~~~~~~----~~~~~~~l~~L~ 222 (371)
.+..+++|.+|+++..... .++...+.. ....+..||-+|-.. .+...+ .-...+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 3578899999999754221 111122211 122233333333332 221111 224578889999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC
Q 043737 223 YEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG 258 (371)
Q Consensus 223 ~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g 258 (371)
.++..+.|..+....... -...-..+.+++.+.|
T Consensus 412 ~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 412 LEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcC
Confidence 999999999998643311 0111224555566666
No 237
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0014 Score=55.38 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999998
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=97.18 E-value=0.0019 Score=61.04 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
+.+|.++|++|+||||++..++..+. ...-..+..+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEcc
Confidence 57899999999999999999888772 1112345555544
No 239
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.18 E-value=0.0027 Score=57.78 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
...++.|+|++|+|||+|+.+++..... .......++|++.....+...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 4579999999999999999998764310 1112236799988776666653 344455443
No 240
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00077 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|.|.|++|+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999996
No 241
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0023 Score=59.11 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
..++|+|+|++|+||||++..++..+. ..-..+..+..+... ...+-+...+..++.+.. ...++......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 347899999999999999999998872 222345566654332 222333444445543321 22344555444433
Q ss_pred HhCC-CceEEEEeCCC
Q 043737 161 NMSN-KKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~-~~~LlVlDdv~ 175 (371)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23488888774
No 242
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.17 E-value=0.0024 Score=56.72 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=26.5
Q ss_pred HHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 77 CLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 77 ~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.+.+..++.|.|.+|+|||||+..++..+
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334567899999999999999999999987
No 243
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=52.11 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEE
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWV 120 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv 120 (371)
..-.+.|.|+.|+|||||.+.++--+ +..-..+.|-
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~ 62 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQ 62 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEec
Confidence 34588999999999999999998776 3333455665
No 244
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.0007 Score=55.87 Aligned_cols=34 Identities=26% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 74 VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 74 l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...+......+|+|.|++|+||||+|..+++..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444545677899999999999999999998875
No 245
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0072 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++-|.++||+|+|||-||+.++++-
T Consensus 187 dpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 467889999999999999999999886
No 246
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.16 E-value=0.00073 Score=66.92 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
.-+.++|.++.++.|...+.+. +.+.++|++|+||||+|+.+++.+. ..+++.++|..- ...+...+++.+...+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 3467899999999888877554 4799999999999999999998872 344577788655 3346667777666555
Q ss_pred c
Q 043737 140 N 140 (371)
Q Consensus 140 ~ 140 (371)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 247
>PRK07667 uridine kinase; Provisional
Probab=97.15 E-value=0.0011 Score=56.05 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=29.0
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 72 DRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 72 ~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|.+.+.. +...+|+|.|.+|+||||+|..+...+
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555543 345799999999999999999999887
No 248
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0031 Score=55.87 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH---HhccCCCCCCcCCHHH---HH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK---KINLFNESWNSRSLQE---KS 155 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~---~~ 155 (371)
..+++=|+|+.|+||||+|.+++-.. +.....++|++.-...++..+...... .+... ...+.++ ..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~----~~~~~e~q~~i~ 131 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVS----QPDTGEQQLEIA 131 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEe----cCCCHHHHHHHH
Confidence 45788899999999999999988777 444448999999888777665543333 22221 2223333 33
Q ss_pred HHHHHHhCCCceEEEEeCCC
Q 043737 156 QDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 156 ~~l~~~l~~~~~LlVlDdv~ 175 (371)
..+......+--|+|+|.+-
T Consensus 132 ~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHhccCCCCEEEEecCc
Confidence 33333333334599999984
No 249
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0019 Score=59.69 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+++++|+.|+||||++.+++.... .......+..+.... .....+-+..+.+.++.+.. ...+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-H
Confidence 356999999999999999999998751 111223566666443 23445666666777765432 122222232222 3
Q ss_pred HhCCCceEEEEeCCC
Q 043737 161 NMSNKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~ 175 (371)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 467799885
No 250
>PTZ00035 Rad51 protein; Provisional
Probab=97.15 E-value=0.0053 Score=56.41 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~ 151 (371)
...++.|+|++|+|||+|+.+++-.... ....-..++|++.....+...+ .++++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4578999999999999999998765410 1112346789987766565553 3444444432110 012233
Q ss_pred HHHHHH---HHHHhC-CCceEEEEeCCC
Q 043737 152 QEKSQD---IVKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~~~~~~---l~~~l~-~~~~LlVlDdv~ 175 (371)
++.... +...+. .+.-|+|+|.+.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 333332 233333 344589999884
No 251
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.025 Score=48.86 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+=|-+..+++|++++.- ..++-|.++||+|.|||-+|+..+.+-
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 356778888888887641 245678999999999999999987764
No 252
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.11 E-value=0.0024 Score=61.09 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|.|++|+|||||+.+++.... ..-..++|++... +..++... +..++...... ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 356999999999999999999998873 2234678887643 33333322 44554322111 122333333333
Q ss_pred HHHhCCCceEEEEeCCCC
Q 043737 159 VKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~ 176 (371)
. ..++-++|+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 2 23566999999853
No 253
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.10 E-value=0.0051 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999887
No 254
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.10 E-value=0.0013 Score=52.15 Aligned_cols=41 Identities=32% Similarity=0.283 Sum_probs=31.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHH
Q 043737 86 VGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 132 (371)
|.|+|++|+|||+||+.+++.+ . ....-+.++...+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccce
Confidence 7899999999999999999887 1 234456777776766665
No 255
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.09 E-value=0.0028 Score=59.85 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++.++|++|+||||++..++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999998886
No 256
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0098 Score=50.94 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=80.4
Q ss_pred cccc-hhHHHHHHHHHh-------------cCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 64 VVGL-QSTFDRVWRCLM-------------EEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 64 ~vGR-~~~~~~l~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
++|+ +..+++|.+.+. -.+++-|.++|++|.|||-||+.++++- ...|+.++..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 4554 556666555442 1366789999999999999999998775 3455666542
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc-----------------ccccccccCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD-----------------LSQVGLPVPCRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~ 191 (371)
++.+..... . ......+.-.. ..-+.++..|+++.... ++.+...-....
T Consensus 216 elvqk~ige----g--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ELVQKYIGE----G--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHHhhh----h--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 222221110 0 01111111111 13466888888875311 111111111134
Q ss_pred CCCcEEEEec-CchHHHhh-c---cCCCceeecCCChHHHHHHHHHHhCCCC
Q 043737 192 SASNKTVFTA-RELEVCGQ-M---EAHKSFKVERLGYEDAWKLFEEKVGKEI 238 (371)
Q Consensus 192 ~~~~~iliTs-R~~~~~~~-~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~ 238 (371)
..+.+||..| |...+... + .-...++.++-+.+.-.+++.-+...-+
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 5677777755 43322111 1 2234577888777777777776654443
No 257
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.08 E-value=0.0031 Score=57.52 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT---PNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
...++-|+|++|+|||+|+.+++...... ...-..++|++.....+...+.+ ++..++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45788999999999999999998775210 11123799999887767666543 344443
No 258
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.08 E-value=0.0042 Score=55.28 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCC-CCCcCCHHHH-HHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNE-SWNSRSLQEK-SQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-~~~l 158 (371)
+.+++.++|++|+||||++..++..+. ..-..+.++...... ...+-+.......+.... .....++... ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 457899999999999999999998872 223467777665321 123334445555553211 1112233332 2333
Q ss_pred HHHhCCCceEEEEeCCCC
Q 043737 159 VKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~ 176 (371)
........=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 333334445888898743
No 259
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.08 E-value=0.00046 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998884
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00063 Score=54.13 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
..-|+|+|++|+||||+++.+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35789999999999999999999883
No 261
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.07 E-value=0.0023 Score=57.83 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++-|+|+.|+||||||.+++... ......++|++.....+. ..+..++...... .....++.+...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 35699999999999999999998887 233457899988775544 3344444432221 233455666666
Q ss_pred HHHhCCC-ceEEEEeCCCCc
Q 043737 159 VKNMSNK-KFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~~~-~~LlVlDdv~~~ 177 (371)
...++.. .-++|+|.+...
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 6666544 358999998644
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.06 E-value=0.0032 Score=56.50 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
..++++|+|+.|+||||++..++..+. .......+..++..... .....+......++.+.. ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 346899999999999999999988772 11111356666655422 223344444555554332 2233444433333
Q ss_pred HhCCCceEEEEeCC
Q 043737 161 NMSNKKFVLLLDHI 174 (371)
Q Consensus 161 ~l~~~~~LlVlDdv 174 (371)
.+.+ .=++++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3443 347888853
No 263
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.06 E-value=0.0025 Score=56.43 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...++.|.|++|+|||+|+.+++.... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 456999999999999999999877652 2234678888764
No 264
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.06 E-value=0.0018 Score=57.43 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCH
Q 043737 72 DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSL 151 (371)
Q Consensus 72 ~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 151 (371)
+.+..++ .....++.|.|+.|+||||++..+..... .....++.+.-........ ..++.... ...
T Consensus 70 ~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~~--~~~--- 135 (264)
T cd01129 70 EIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVNE--KAG--- 135 (264)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeCC--cCC---
Confidence 3343443 44557999999999999999999887762 2222344332211111110 01111110 011
Q ss_pred HHHHHHHHHHhCCCceEEEEeCCCCccccc
Q 043737 152 QEKSQDIVKNMSNKKFVLLLDHIWELVDLS 181 (371)
Q Consensus 152 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~ 181 (371)
......+...++..+=.++++++.+.+...
T Consensus 136 ~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 136 LTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred cCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 124455666677778899999998776544
No 265
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.06 E-value=0.0023 Score=60.67 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHh-----cC--CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 67 LQSTFDRVWRCLM-----EE--QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 67 R~~~~~~l~~~L~-----~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
....+.++..||. .. +.+++.|+||+|+||||.++.++..+ .+..+=|.+
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~N 143 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWSN 143 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----CceeeeecC
Confidence 3456677888887 22 45799999999999999999998876 344566663
No 266
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.05 E-value=0.0044 Score=56.67 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
...++-|+|++|+|||+|+.+++....... ..-..++|++.....++..+.+ ++..++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 457889999999999999999987752111 1124799999887766666543 334443
No 267
>PRK04328 hypothetical protein; Provisional
Probab=97.04 E-value=0.0024 Score=56.22 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...++.|.|++|+|||+|+.+++... -..-..++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeC
Confidence 45799999999999999999988774 12234678887765
No 268
>PRK05973 replicative DNA helicase; Provisional
Probab=97.04 E-value=0.0049 Score=53.43 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---------CCcCCHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---------WNSRSLQ 152 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~ 152 (371)
...++.|.|.+|+|||+++.+++.... . .-..+++++.... ..++...+. .++..... ......+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHH
Confidence 456999999999999999999988762 2 2345677766543 344444432 22321110 0112233
Q ss_pred HHHHHHHHHhCCCceEEEEeCCC
Q 043737 153 EKSQDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 153 ~~~~~l~~~l~~~~~LlVlDdv~ 175 (371)
.....+... .+.-++|+|.+.
T Consensus 137 ~ii~~l~~~--~~~~lVVIDsLq 157 (237)
T PRK05973 137 YIIARLASA--PRGTLVVIDYLQ 157 (237)
T ss_pred HHHHHHHHh--hCCCEEEEEcHH
Confidence 333333331 234589999885
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.04 E-value=0.00057 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998886
No 270
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.04 E-value=0.0017 Score=53.90 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=64.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe---CCcCCHHHHHHHHHHHhcc--CCC--CCCcCCH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA---SKDLQLEQIQGSIAKKINL--FNE--SWNSRSL--- 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~l~~~l~~--~~~--~~~~~~~--- 151 (371)
....|.|+|..|-||||.|.-.+-+.. .+-..+..+.+ ....+....+..+- .+.. ... .+...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHH
Confidence 456999999999999999998888762 22223443333 22234444444321 1100 000 0111111
Q ss_pred ----HHHHHHHHHHhCCCce-EEEEeCCCCc-----ccccccccccCCCCCCCcEEEEecCch
Q 043737 152 ----QEKSQDIVKNMSNKKF-VLLLDHIWEL-----VDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 152 ----~~~~~~l~~~l~~~~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
.......++.+.+.+| |+|||++-.. -+.+.+...+. ....+..||+|-|..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 1234444455555544 9999998533 23344444444 455677999999974
No 271
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.04 E-value=0.0012 Score=54.40 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCeEEEEEeCCcCC
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTP-NDFDFVIWVVASKDLQ 127 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 127 (371)
...+.+.||.|+|||.||+.+++.+ . ......+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4578899999999999999999998 4 4555667777665444
No 272
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0081 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-+-|.++||+|.|||-||++++-..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3678999999999999999999987
No 273
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.021 Score=50.89 Aligned_cols=38 Identities=5% Similarity=0.085 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 70 TFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 70 ~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-++|...+.++. ...+.++|+.|+||+++|..++..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3466777776654 4577899999999999999998887
No 274
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.01 E-value=0.0016 Score=60.61 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEE--------------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.++..+.+.-++.+. ..+.|.++|++|+|||++|+.++...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899998888887666531 23689999999999999999999987
No 275
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.001 Score=52.17 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.+.|.|+|.+|+|||||+.+++... ..-|++++.-..-.++....-..... ...+.+.+++.+-..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHH
Confidence 4678999999999999999999665 34566666543333333322222211 2334455555555555
Q ss_pred CCC
Q 043737 163 SNK 165 (371)
Q Consensus 163 ~~~ 165 (371)
.+.
T Consensus 74 ~~G 76 (176)
T KOG3347|consen 74 IEG 76 (176)
T ss_pred hcC
Confidence 443
No 276
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0013 Score=52.45 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccC
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLF 142 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~ 142 (371)
+|.|.|++|+||||+|+.++++. ...+ + +.-.++++++...+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999998 2221 1 2236788888888765
No 277
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.99 E-value=0.0063 Score=52.82 Aligned_cols=40 Identities=30% Similarity=0.252 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
....+.|.|++|+|||+|+.+++.... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 457999999999999999999876542 1234678887644
No 278
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.99 E-value=0.0033 Score=55.47 Aligned_cols=94 Identities=14% Similarity=0.258 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
+...++|.|.+|+|||+|++++++... ..+-+.++++-++... .+.++.+.+...=.... -......+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 455889999999999999999999872 1223355666665543 45566666554211100 0001111211
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCCCCc
Q 043737 154 ---KSQDIVKNM---SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ---~~~~l~~~l---~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++.+|+++||+-+.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 122233444 388999999998543
No 279
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.98 E-value=0.0011 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998886
No 280
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.98 E-value=0.0016 Score=50.99 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 69 STFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 69 ~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++..++-+.|.. ....++.|.|+-|+|||||++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455444443 344699999999999999999999987
No 281
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.98 E-value=0.0028 Score=62.93 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
..+.++|.++.++.+..++.+. +.+.++|++|+|||++++.+++.+. ...|..++++.-. ..+..+++..++..+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGE 90 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhh
Confidence 3467899999888888877554 3677999999999999999998883 2233333433322 224445555555554
Q ss_pred c
Q 043737 140 N 140 (371)
Q Consensus 140 ~ 140 (371)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 3
No 282
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.98 E-value=0.0036 Score=51.26 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccC----CCCCCCeEEEEE-----------------------eCCcCCHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLH----TPNDFDFVIWVV-----------------------ASKDLQLEQIQG 133 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----~~~~f~~~~wv~-----------------------~~~~~~~~~~~~ 133 (371)
=..++-+|+|..|+|||||...++-...- ....|..-+..+ ...-.++..-+.
T Consensus 35 F~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~D 114 (233)
T COG3910 35 FRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLD 114 (233)
T ss_pred ccCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHH
Confidence 36789999999999999999888766521 111122111111 111112222222
Q ss_pred HHHHHhccCCCCCCcCCHHH-HHHHHHHHhCCCceEEEEeCCCCcc----cccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 134 SIAKKINLFNESWNSRSLQE-KSQDIVKNMSNKKFVLLLDHIWELV----DLSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 134 ~l~~~l~~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
++........++....+..+ ....+...+.++ =+.|||+-+... +++.+...-. ....|+.|||.|.++-+..
T Consensus 115 e~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~-la~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 115 EADGEANYGGRSLHHMSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRD-LADSGAQIIIATHSPILLA 192 (233)
T ss_pred hhhhhcccCCcchhhhccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHH-HHhcCCeEEEEecChhhee
Confidence 22222222222222333333 334444444444 488999986542 2222222222 3456789999999876654
Q ss_pred hccCCCceeec
Q 043737 209 QMEAHKSFKVE 219 (371)
Q Consensus 209 ~~~~~~~~~l~ 219 (371)
+.....+++.
T Consensus 193 -iP~A~I~~~~ 202 (233)
T COG3910 193 -IPGAEIYEIS 202 (233)
T ss_pred -CCCcEEEEEe
Confidence 3555555553
No 283
>PRK08233 hypothetical protein; Provisional
Probab=96.98 E-value=0.00072 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||||..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999887
No 284
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.97 E-value=0.0056 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
..-.|+|.|++|+|||||...+.--
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4459999999999999999877544
No 285
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.0079 Score=55.03 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCC-CCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINLFNES-WNSRSLQEKSQDIV 159 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~ 159 (371)
+..++.++|++|+||||++..++..+. ...+ .+..+..... ......+...+..++.+... ....++........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 357999999999999999999988773 2222 3444543321 22334456667777653221 12233333322222
Q ss_pred HHh-CCCceEEEEeCCCCc
Q 043737 160 KNM-SNKKFVLLLDHIWEL 177 (371)
Q Consensus 160 ~~l-~~~~~LlVlDdv~~~ 177 (371)
+.. ....-++++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 222 222239999998543
No 286
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.96 E-value=0.00097 Score=53.64 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
..+|.|+|.+|+||||||+.+.+++ ......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 4589999999999999999999998 33334566664
No 287
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.95 E-value=0.0038 Score=58.76 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|.++|+.|+||||++..++..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998877
No 288
>PRK14527 adenylate kinase; Provisional
Probab=96.95 E-value=0.0015 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 289
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.95 E-value=0.0081 Score=55.46 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
+.++|.++||.|+||||-..+++.+. ...+.-..+..++.+... ...+-++..+.-++.+.. ...++.+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47899999999999986555555554 122444567777665432 445666777777776543 33444444444433
Q ss_pred HhCCCceEEEEeCCC
Q 043737 161 NMSNKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~ 175 (371)
+++.. ++.+|-+.
T Consensus 279 -l~~~d-~ILVDTaG 291 (407)
T COG1419 279 -LRDCD-VILVDTAG 291 (407)
T ss_pred -hhcCC-EEEEeCCC
Confidence 33333 66677664
No 290
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.95 E-value=0.004 Score=51.54 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC--CC---CC--CeEEEEEeCCcCCHHHHHHHHHHHhccCCC----CCCcCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT--PN---DF--DFVIWVVASKDLQLEQIQGSIAKKINLFNE----SWNSRS 150 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~---~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~ 150 (371)
...+++|.|+.|+|||||.+.+......+ .. .+ ..+.|+. + .+.+..++.... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 45699999999999999999886321100 00 00 0122321 1 345566654321 111222
Q ss_pred HHHH-HHHHHHHhCCC--ceEEEEeCCCCccc---ccccccccCCCCCCCcEEEEecCchHHH
Q 043737 151 LQEK-SQDIVKNMSNK--KFVLLLDHIWELVD---LSQVGLPVPCRTSASNKTVFTARELEVC 207 (371)
Q Consensus 151 ~~~~-~~~l~~~l~~~--~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTsR~~~~~ 207 (371)
..+. .-.+...+-.+ +-++++|+-....+ .+.+...+......+..||++|.+....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 2222 22233333445 66999999754322 2222222221112466788888776654
No 291
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.94 E-value=0.0035 Score=58.89 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHHHHhc----------C--------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME----------E--------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~----------~--------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.++..+.+..++.+ . ....+.++|++|+|||+||+.++..+
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 46679999998888766521 0 12579999999999999999999776
No 292
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.94 E-value=0.00056 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|.|+|++|+|||+||..++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988887
No 293
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.94 E-value=0.0055 Score=59.44 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------------CCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------------WNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~ 148 (371)
...++.|.|++|+|||||+.+++.... ..-..+++++... +..++.... ..++..... ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 457999999999999999999998863 2334577776654 445555443 344432111 123
Q ss_pred CCHHHHHHHHHHHhCC-CceEEEEeCCC
Q 043737 149 RSLQEKSQDIVKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 149 ~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 175 (371)
...++.+..+.+.+.. ++-.+|+|.+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 3456677777777654 55689999985
No 294
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.93 E-value=0.00091 Score=61.85 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+-+.|||..|.|||.|.-.+++... .+.. ...-...+..++-+.+..... .. +.+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp-~~~k----------~R~HFh~Fm~~vh~~l~~~~~--~~----~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP-IKRK----------RRVHFHEFMLDVHSRLHQLRG--QD----DPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC-cccc----------ccccccHHHHHHHHHHHHHhC--CC----ccHHHHHHH
Confidence 467899999999999999999999983 2111 111223455555444432110 11 223344455
Q ss_pred hCCCceEEEEeCCC--CcccccccccccCCCCCCCcEEEEecCc
Q 043737 162 MSNKKFVLLLDHIW--ELVDLSQVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 162 l~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~~~iliTsR~ 203 (371)
+.++..||.||+++ +..+---+...+......|..++.||-.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 55666799999985 3333211222222233456555555543
No 295
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.93 E-value=0.0071 Score=54.14 Aligned_cols=82 Identities=15% Similarity=0.026 Sum_probs=43.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
..+.+|+|.|+.|+||||+|+.+..-+... ..-..+..++...-........... +.....-....+.......+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~vi~~D~f~~~~~~l~~~g--~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW-PEHRKVELITTDGFLHPNQVLKERN--LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEEEecccccccHHHHHHcC--CccccCCChhccHHHHHHHHHH
Confidence 346799999999999999998776655211 1112345555444332223222211 1111111245566666666666
Q ss_pred HhCCC
Q 043737 161 NMSNK 165 (371)
Q Consensus 161 ~l~~~ 165 (371)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 55544
No 296
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.93 E-value=0.0018 Score=56.10 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccC-------------CCCCC-
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLF-------------NESWN- 147 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~-------------~~~~~- 147 (371)
...++.|.|++|+|||+|+.+++.... ...-..++|++.... ..++.+.+. .++.. .....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 457999999999999999999876642 111346788887654 344444432 33221 00001
Q ss_pred ----cCCHHHHHHHHHHHhCC-CceEEEEeCCC
Q 043737 148 ----SRSLQEKSQDIVKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 148 ----~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 175 (371)
..+.......+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 35677777777776654 45799999974
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.92 E-value=0.007 Score=52.57 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
...++.|.|++|+|||||+.+++.... + .-..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~-~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--Q-NGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--h-CCCcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999988877652 1 124566666433 455666555
No 298
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.92 E-value=0.0026 Score=56.47 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
++|.|+|.+|+||||+|+++...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999883
No 299
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.92 E-value=0.0044 Score=59.33 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|.|++|+|||||+.+++.... ..-..++|++... +..++.. -+..++...... ...+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999988763 2223577877643 3333322 223343321111 122333333333
Q ss_pred HHHhCCCceEEEEeCCCC
Q 043737 159 VKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~ 176 (371)
. +.+.-++|+|.+..
T Consensus 167 ~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 E---EENPQACVIDSIQT 181 (454)
T ss_pred H---hcCCcEEEEecchh
Confidence 2 23566899999864
No 300
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.91 E-value=0.0033 Score=63.31 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++-|+|++|+|||||+.+++... ...-..++|++.....+. ..++.++...... ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46799999999999999999987765 222356789887765553 2556665532211 233445555555
Q ss_pred HHHhCC-CceEEEEeCCC
Q 043737 159 VKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~~-~~~LlVlDdv~ 175 (371)
...+.. ..-|+|+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 555543 56699999985
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.91 E-value=0.00078 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 302
>PF13245 AAA_19: Part of AAA domain
Probab=96.90 E-value=0.0025 Score=44.68 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC-CCCCCCeEEEEEeC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH-TPNDFDFVIWVVAS 123 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~ 123 (371)
+.+++.|.|++|+|||+++.+.+..+.. .......++.+..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4568888999999999766666555521 12223456665443
No 303
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.89 E-value=0.01 Score=54.43 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC---CCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC-------CcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH---TPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW-------NSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~ 151 (371)
...++-|+|++|+|||+|+.+++-.... ....-..++|++....++++++. ++++.++...... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 3568889999999999999988755311 01122379999998877776654 4455555432110 11233
Q ss_pred HHHHHHH---HHHhC-CCceEEEEeCCC
Q 043737 152 QEKSQDI---VKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~~~~~~l---~~~l~-~~~~LlVlDdv~ 175 (371)
+.....+ ...+. .+.-|||+|.+.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 3332222 22232 345588888874
No 304
>PRK06762 hypothetical protein; Provisional
Probab=96.88 E-value=0.00093 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.+|.|+|++|+||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998886
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.006 Score=53.43 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
...++.|.|++|+|||+++.+++.+.. ..+-..++|++... +..++...+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHH
Confidence 346999999999999999999888762 22234677777654 3444444443
No 306
>PTZ00301 uridine kinase; Provisional
Probab=96.88 E-value=0.00093 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988776
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.88 E-value=0.013 Score=52.02 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=65.1
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc-CCCC----
Q 043737 72 DRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL-FNES---- 145 (371)
Q Consensus 72 ~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~-~~~~---- 145 (371)
+.++..+.+ .....++|.|+.|+|||||.+.++.... ...+.+++.-..-... +-..++...... +...
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 444444443 3456899999999999999999998762 2233344321111001 111233322211 1110
Q ss_pred CCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHH
Q 043737 146 WNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
....+.......+...+. -.+-++++|++.....+..+...+ ..|..+|+||-+..+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHH
Confidence 011111111222333333 467799999987655444443322 247789999987554
No 308
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.86 E-value=0.0023 Score=55.47 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=35.5
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC
Q 043737 70 TFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL 126 (371)
Q Consensus 70 ~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 126 (371)
...++++.+.. ++..+|+|+|++|+|||||+..+...+. ..++--.++-++-+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCC
Confidence 33455555543 4678999999999999999999999883 23333455555544443
No 309
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.85 E-value=0.0023 Score=59.68 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 70 TFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 70 ~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++.+++.+.......++|.|+||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34555666666667899999999999999999999888
No 310
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.85 E-value=0.0032 Score=57.95 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=48.0
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 133 (371)
..++|+++.+..+..++..+ +.+.+.|++|+|||+||+.++... .. ..+++.+.......++.-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcC
Confidence 44899998888887777544 488899999999999999999998 32 345566666555555543
No 311
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0059 Score=56.99 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTP-NDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
.++|.++|+.|+||||.+..++..+.... ..-..+..++..... ....-+..+++.++.+.. ......+....+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHH
Confidence 57999999999999999999988762111 123356666665421 223336666666665432 23334444444433
Q ss_pred HhCCCceEEEEeCCCC
Q 043737 161 NMSNKKFVLLLDHIWE 176 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~ 176 (371)
+ .+.-++++|....
T Consensus 252 -~-~~~DlVLIDTaGr 265 (388)
T PRK12723 252 -S-KDFDLVLVDTIGK 265 (388)
T ss_pred -h-CCCCEEEEcCCCC
Confidence 3 3445899998853
No 312
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.84 E-value=0.011 Score=50.61 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=56.6
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCC----CCCCc
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINLFN----ESWNS 148 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~----~~~~~ 148 (371)
++.|.. .+...++|.|.+|+|||+|+.++++.. .-+.++++.++.. ....++.+++...-.... -....
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 444433 344588999999999999999999887 2344577777654 356666666644311100 00011
Q ss_pred CCHHH----------HHHHHHHHhCCCceEEEEeCCCC
Q 043737 149 RSLQE----------KSQDIVKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 149 ~~~~~----------~~~~l~~~l~~~~~LlVlDdv~~ 176 (371)
..+.. ..+.++. +++.+|+++||+..
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhHH
Confidence 12111 1222222 68999999999843
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0081 Score=55.37 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
..++++++|+.|+||||++..++.... ..-..+.+++..... ...+-+...+..++.+.. ...++.+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 467999999999999999999987762 122357777765432 234455566666654322 23455555444433
Q ss_pred HhC-CCceEEEEeCCCC
Q 043737 161 NMS-NKKFVLLLDHIWE 176 (371)
Q Consensus 161 ~l~-~~~~LlVlDdv~~ 176 (371)
.-. +..=++++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3345888888753
No 314
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.81 E-value=0.0063 Score=50.69 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE---eCCcCCHHH------HHHHHHHHhccCC---CCCCcC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV---ASKDLQLEQ------IQGSIAKKINLFN---ESWNSR 149 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~l~~~l~~~~---~~~~~~ 149 (371)
...+++|.|+.|+|||||++.++... . ...+.++++ +.. .+... ...+++..++... ......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~-~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---K-PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---C-CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45699999999999999999998765 2 233334332 111 11111 1122445554321 111222
Q ss_pred CHHHH-HHHHHHHhCCCceEEEEeCCCCccc---ccccccccCCCCCC-CcEEEEecCchHHH
Q 043737 150 SLQEK-SQDIVKNMSNKKFVLLLDHIWELVD---LSQVGLPVPCRTSA-SNKTVFTARELEVC 207 (371)
Q Consensus 150 ~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~-~~~iliTsR~~~~~ 207 (371)
+..+. .-.+...+-..+-++++|+-....+ .+.+...+...... +..+|++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22322 2223344455677999999764322 22222222211122 56788888775543
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.012 Score=59.99 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=66.7
Q ss_pred CccccchhHHHHHHHHHhcC--------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEE--------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 133 (371)
..++|-++.+..|.+++... ..-...+.||.|+|||-||+.++..+ .+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh
Confidence 44688888888888887641 23467789999999999999999988 45555555554443 222
Q ss_pred HHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCce-EEEEeCCCCc
Q 043737 134 SIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKF-VLLLDHIWEL 177 (371)
Q Consensus 134 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 177 (371)
..++...++. ..-.+...++.+.++.+++ +|+|||++..
T Consensus 633 --vskligsp~g---yvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 --VSKLIGSPPG---YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred --hhhccCCCcc---cccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3333222221 2222334466677777764 8889999854
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.80 E-value=0.0057 Score=50.23 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....++|.|+.|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998775
No 317
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.80 E-value=0.012 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998765
No 318
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.80 E-value=0.069 Score=47.37 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
-+.+|+||.|+|||+|.+.+...- ........|+||.-..
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~~ 127 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQK 127 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCCC
Confidence 466789999999999999988765 3455666888886443
No 319
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.80 E-value=0.0043 Score=57.88 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEE--------------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.++..+.+..++.+. ..+.+.++|++|+|||+||+.++...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999998888777430 14688999999999999999999887
No 320
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.80 E-value=0.0079 Score=51.82 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
+|+|.|++|+||||||+.+...+. ....-..+..++...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~-~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS-RWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh-hcCCCCcEEEEecCcc
Confidence 489999999999999999998872 1011123555555543
No 321
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.80 E-value=0.0013 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+..+|+|.|++|+|||||+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999886
No 322
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0059 Score=58.68 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+++|+|+.|+||||++.+++..+. .......+..++..... ...+.+......++.... ...+.......+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 457999999999999999999887762 12222345555543321 222333333344433221 222333333333 3
Q ss_pred HhCCCceEEEEeCCC
Q 043737 161 NMSNKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~ 175 (371)
.+.+ .-+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4488899874
No 323
>PRK06217 hypothetical protein; Validated
Probab=96.79 E-value=0.0028 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|.+|+||||||+++...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999887
No 324
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.79 E-value=0.0025 Score=52.33 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 64 VVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|.+..+.++.+.+.. .....|.|+|+.|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887764 344678899999999999999998765
No 325
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.79 E-value=0.011 Score=51.58 Aligned_cols=125 Identities=16% Similarity=0.103 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-----cCCHHHHHHHHHHHhccCCCC----CCcCCHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-----DLQLEQIQGSIAKKINLFNES----WNSRSLQ 152 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 152 (371)
....++|+|.+|+|||||++.++.-. ... .+.++..-.. .....+-..+++..++..... ...-+-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45699999999999999999998776 223 3333333211 112334455666666643211 1112222
Q ss_pred HH-HHHHHHHhCCCceEEEEeCCCCcccc---ccccccc-CCCCCCCcEEEEecCchHHHhhc
Q 043737 153 EK-SQDIVKNMSNKKFVLLLDHIWELVDL---SQVGLPV-PCRTSASNKTVFTARELEVCGQM 210 (371)
Q Consensus 153 ~~-~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l-~~~~~~~~~iliTsR~~~~~~~~ 210 (371)
+. .-.+.+.+.-++-++|.|+.....+. .++...+ ......+...++.|-+-.+...+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 22 22344556678889999998654332 1111111 11233456677777766665543
No 326
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.78 E-value=0.0036 Score=55.03 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=54.8
Q ss_pred cccchhHHHHHHHHHh----cC---CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 64 VVGLQSTFDRVWRCLM----EE---QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~----~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
++|..-..+.++..+. +. ++-++.+||.+|+||.-++..+++......-. ......+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~---------------S~~V~~fv 148 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR---------------SPFVHHFV 148 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc---------------chhHHHhh
Confidence 5665444444555544 32 34588899999999999999999887322211 12233333
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCc
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 177 (371)
..+..+.+.....--+++...++...+ -++.|+|||+++.+
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 333322211111112223333333333 36789999999876
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0058 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998775
No 328
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.76 E-value=0.00087 Score=51.60 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCCe
Q 043737 86 VGLYGMGEVGKTTLLTQINKKFLHTPNDFDF 116 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~ 116 (371)
|.|+|.+|+|||++|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999998 556654
No 329
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.75 E-value=0.014 Score=63.42 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999887
No 330
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.75 E-value=0.0018 Score=62.23 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=53.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEE-EEEeCCcC-CHHHHHHHHHHHhccCCCCCC---
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVI-WVVASKDL-QLEQIQGSIAKKINLFNESWN--- 147 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~--- 147 (371)
+++.|.. +......|+|++|+|||+|++.+++... ..+.+..+ .+-+...+ .+.++...+-..+-....+.+
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~ 483 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSD 483 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHH
Confidence 3444433 3455788999999999999999998763 22334333 33444433 333333333111111111000
Q ss_pred cCCHHHHHHHHHHHh--CCCceEEEEeCCCC
Q 043737 148 SRSLQEKSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 148 ~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
........-.+.+++ .++.+||++|++..
T Consensus 484 ~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 484 HTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 011112222233444 57899999999853
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0065 Score=56.81 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINL 141 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~ 141 (371)
..+++++|++|+||||++.+++..... ... ..+..++.... ......+...+..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgv 280 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-HMG-KSVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEecccchhhhHHHHHHHHHHhcCC
Confidence 357899999999999999999876411 111 23444444331 1233444455555554
No 332
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.73 E-value=0.0023 Score=53.53 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
.++++|+|++|+|||||+..++... ...|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 5789999999999999999999988 56675444443
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.73 E-value=0.003 Score=51.76 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=58.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc--CCHHHHHHHHHHHhccCCCCCCcCCHHHH-HHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD--LQLEQIQGSIAKKINLFNESWNSRSLQEK-SQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~l 158 (371)
...+++|.|+.|+|||||.+.++... ....+.+++.-... .+..+. ....++... + -+..+. .-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---q-LS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---Q-LSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---e-cCHHHHHHHHH
Confidence 44699999999999999999998765 23344455432111 111111 111122111 1 222222 2233
Q ss_pred HHHhCCCceEEEEeCCCCccc---ccccccccCCCCCCCcEEEEecCchHH
Q 043737 159 VKNMSNKKFVLLLDHIWELVD---LSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
...+-..+-++++|+-....+ ...+...+......+..||++|.+...
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 344455667999999864433 222222222112236678888877654
No 334
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.73 E-value=0.0047 Score=62.73 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|+...+.++.+.+.. .....|.|+|+.|+|||.+|+.+....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4689999998888776653 344689999999999999999997765
No 335
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.73 E-value=0.0022 Score=66.25 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCeEEEEEeCCcC----CHH--HHHHHHHHHhccCCCCCCcCCHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTP-NDFDFVIWVVASKDL----QLE--QIQGSIAKKINLFNESWNSRSLQEKS 155 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~----~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~ 155 (371)
..-+.|+|.+|+||||+...++-...... ..-+..+++.+.... ... .+..-+...+.... ...+..
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~------~~~~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG------IAKQLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC------Ccchhh
Confidence 34788999999999999998887764222 122344455443111 111 33333333332211 112222
Q ss_pred HHHHHHhCCCceEEEEeCCCCccc------ccccccccCCCCCCCcEEEEecCchHHHhhccCCCceeecCCChHHHHHH
Q 043737 156 QDIVKNMSNKKFVLLLDHIWELVD------LSQVGLPVPCRTSASNKTVFTARELEVCGQMEAHKSFKVERLGYEDAWKL 229 (371)
Q Consensus 156 ~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~ea~~l 229 (371)
....+.++..++++++|.++.... ...+...++ .-+.+.+|+|+|....-........+++..+.++.-...
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~--~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ--EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh--hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 233677888999999999985522 222222222 334789999999876654444455666767666655544
Q ss_pred HHHHh-----CCC-CCCCCC---CHHHH---HHHHHHHcCCCcHHHHHHHHHHcCC-----CChhHHHHHHHHHhc
Q 043737 230 FEEKV-----GKE-ILDSHP---DIPEL---AETVAKECGGLPLALITVGRAMASK-----KTPREWEHAIEVLRS 288 (371)
Q Consensus 230 l~~~~-----~~~-~~~~~~---~~~~~---~~~i~~~~~g~Plal~~~a~~l~~~-----~~~~~~~~~l~~l~~ 288 (371)
..... ... ...... ....+ ...-.+.....|+.|.+.+..-... ...+-++..++.+-.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 43111 110 000111 00000 1222333478899999998555411 234445555544443
No 336
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.011 Score=60.15 Aligned_cols=130 Identities=14% Similarity=0.067 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC--
Q 043737 68 QSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-- 145 (371)
Q Consensus 68 ~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-- 145 (371)
.....+|.+++.+ ..++.|.|+.|+||||-.-+++.+.. -...+.+-+.=.......++...++++++.....
T Consensus 52 ~~~~~~i~~ai~~--~~vvii~getGsGKTTqlP~~lle~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQ--NQVVIIVGETGSGKTTQLPQFLLEEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHh--CCEEEEeCCCCCChHHHHHHHHHhhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4566788888844 55999999999999999999888762 1222333333333334567777888887653221
Q ss_pred ---------------CCcCCHHHHHHHHHH-HhCCCceEEEEeCCCCccccccc-----ccccCCCCCCCcEEEEecCc
Q 043737 146 ---------------WNSRSLQEKSQDIVK-NMSNKKFVLLLDHIWELVDLSQV-----GLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 146 ---------------~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~-----~~~l~~~~~~~~~iliTsR~ 203 (371)
....+.+.++..+.. .+-++--.+|+|++++..--.++ ...+. .....-||||+|-.
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~-~rr~DLKiIimSAT 204 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLA-RRRDDLKLIIMSAT 204 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHh-hcCCCceEEEEecc
Confidence 012344444444441 11233448999999865332221 11122 22234899998765
No 337
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.72 E-value=0.0047 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45699999999999999999998765
No 338
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.72 E-value=0.0027 Score=57.57 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=41.5
Q ss_pred CccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..|+|.++.++++++.+.. ...+++.+.||.|.|||||+..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999874 356899999999999999999998887
No 339
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.72 E-value=0.0092 Score=45.87 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.1
Q ss_pred ccccchhHHHHHHHHHh----c---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLM----E---EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~----~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|-.-..+.+.+++. + .++-++.++|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45665555555555543 3 244577899999999999999999885
No 340
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.72 E-value=0.0039 Score=53.96 Aligned_cols=65 Identities=26% Similarity=0.300 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCC----CCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHT----PNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 71 ~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
.+.+..++.. ..+..|+||+|+|||+++..++..+... .......+-+....+..++.++..+..
T Consensus 7 ~~Ai~~~~~~--~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSS--NGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTS--SE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC--CCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3444444422 2278999999999998887777776110 123333334444444445555555444
No 341
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.72 E-value=0.017 Score=51.47 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
...++.|.|++|+|||+++.+++.... ..+-..++|+++.. +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345899999999999999999988762 22245788888765 345555555443
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.71 E-value=0.0014 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++|+|.|++|+||||+++.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998775
No 343
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.71 E-value=0.012 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..|.|++|+|||+|+.+++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0053 Score=50.78 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---CCc--------CC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---WNS--------RS 150 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---~~~--------~~ 150 (371)
....++|.|+.|+|||||++.++... ....+.++++-....... ..+...++..... ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45699999999999999999988765 123444444321110100 1111222211110 011 11
Q ss_pred HHHH-HHHHHHHhCCCceEEEEeCCCCcccc---cccccccCCCCCCCcEEEEecCchHHHh
Q 043737 151 LQEK-SQDIVKNMSNKKFVLLLDHIWELVDL---SQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 151 ~~~~-~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
..+. .-.+...+-.++-++++|+-....+. ..+...+......+..+|++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1221 22334445567779999998644332 2222222111123567888887765543
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.70 E-value=0.0049 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++.|+|.+|+||||||+.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887
No 346
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.70 E-value=0.0022 Score=59.23 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=59.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
.....+.|.|+.|+||||++..++... .......++.- ... .+-..... ..+ ..... ...........+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp--~E~~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDP--IEYVHRNK-RSL-INQRE-VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCC--hhhhccCc-cce-EEccc-cCCCCcCHHHHHHH
Confidence 345799999999999999999988876 32333333332 111 11000000 000 00000 11112234555666
Q ss_pred HhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCch
Q 043737 161 NMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
.++..+=.+++|++-+.+....... ....|..++.|.-..
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~----aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALT----AAETGHLVFGTLHTN 230 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHH----HHHcCCcEEEEEcCC
Confidence 7778888999999976655543211 223355566665543
No 347
>PRK05439 pantothenate kinase; Provisional
Probab=96.70 E-value=0.016 Score=52.28 Aligned_cols=83 Identities=16% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...-+|+|.|.+|+||||+|..+...+. .......+.-++...-......+.. ..+..........+.+.....+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~-~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS-RWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-hhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 3456899999999999999999888662 1111223444554443322222221 111110111134455555655555
Q ss_pred HhCCCc
Q 043737 161 NMSNKK 166 (371)
Q Consensus 161 ~l~~~~ 166 (371)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 555554
No 348
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.68 E-value=0.0016 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|.|+|++|+||||+|+.+++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999987
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.67 E-value=0.0073 Score=48.29 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45699999999999999999987765
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.67 E-value=0.0016 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998876
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.67 E-value=0.0049 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999988765
No 352
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.67 E-value=0.0017 Score=55.44 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+|||||++.++..+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 353
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.66 E-value=0.0088 Score=49.23 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCc-CCHHHHHHHHHHHh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNS-RSLQEKSQDIVKNM 162 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~l 162 (371)
..+.|.|.+|+|||++|..++... .. .++++.... +...+....+..........+.. ..+.++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 11 133443332 33344555554443322222211 11222333333323
Q ss_pred CCCceEEEEeCCC
Q 043737 163 SNKKFVLLLDHIW 175 (371)
Q Consensus 163 ~~~~~LlVlDdv~ 175 (371)
.+ .-++++|.+.
T Consensus 75 ~~-~~~VlID~Lt 86 (170)
T PRK05800 75 AP-GRCVLVDCLT 86 (170)
T ss_pred CC-CCEEEehhHH
Confidence 33 3378999873
No 354
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.66 E-value=0.0052 Score=55.59 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=35.1
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.|+=..+....++.++.. .+.|.|.|++|+|||++|.+++..+
T Consensus 44 d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 34455555566777777743 4579999999999999999999998
No 355
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.085 Score=47.25 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=39.3
Q ss_pred CCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec-CchHHHhh-ccCCCceeecCCChHHHHHHHHH
Q 043737 164 NKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA-RELEVCGQ-MEAHKSFKVERLGYEDAWKLFEE 232 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs-R~~~~~~~-~~~~~~~~l~~L~~~ea~~ll~~ 232 (371)
+++-++|+|+++.+.. .+.+...+. ....++.+|++| ....+... .+....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLE-EPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIE-EPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhc-CCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4556999999987643 444545554 344445555544 44444333 34456777866 66766666653
No 356
>PRK03839 putative kinase; Provisional
Probab=96.65 E-value=0.0016 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 357
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0034 Score=55.26 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=39.0
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCC
Q 043737 72 DRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQ 127 (371)
Q Consensus 72 ~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 127 (371)
.+|+..+.. ++..+|+|+|.||+|||||.-.+...+ ....+--.++=|+-+...+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCC
Confidence 455555543 466799999999999999999999888 3344444566666555544
No 358
>PRK04040 adenylate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=54.32 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|+|++|+||||+++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999887
No 359
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.64 E-value=0.0097 Score=55.31 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
.+++|.|.+|+|||.||..++.++ ..........+++.+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecc
Confidence 588999999999999999999987 2234445566666665
No 360
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.15 Score=47.07 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=38.4
Q ss_pred CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 212 AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 212 ~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
...+++++..+.+|+..+..=.+...-......-++.-+++.=..+|+|--+..++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 44568899999999988875443222111111114457888888899997777776665
No 361
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.63 E-value=0.011 Score=56.24 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
.++++++|++|+||||++..++.... .......+..++..... ....-+......++.+.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 46899999999999999999887761 01223456677665421 122334444455554322 22333444444433
Q ss_pred hCCCceEEEEeCCC
Q 043737 162 MSNKKFVLLLDHIW 175 (371)
Q Consensus 162 l~~~~~LlVlDdv~ 175 (371)
+. ..=++++|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 33 34589999763
No 362
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.63 E-value=0.017 Score=47.49 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=44.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCC
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSN 164 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 164 (371)
++.|.|.+|+|||++|.+++... . ..++++......+. +....+..........+.. .+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~---~---~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t---~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL---G---GPVTYIATAEAFDD-EMAERIARHRKRRPAHWRT---IETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---C---CCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceE---eecHHHHHHHHHh
Confidence 36799999999999999998653 1 24566655554433 3444433322222222222 2222233333321
Q ss_pred --CceEEEEeCCC
Q 043737 165 --KKFVLLLDHIW 175 (371)
Q Consensus 165 --~~~LlVlDdv~ 175 (371)
+.-.+++|.+.
T Consensus 71 ~~~~~~VLIDclt 83 (169)
T cd00544 71 LDPGDVVLIDCLT 83 (169)
T ss_pred cCCCCEEEEEcHh
Confidence 33479999873
No 363
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.62 E-value=0.0052 Score=54.50 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
..+++.|+|.+|+|||+++.+++... ......++|++.... ..++....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHH
Confidence 56799999999999999999999987 344678999988764 34444444
No 364
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.62 E-value=0.0021 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 365
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0064 Score=49.31 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.0
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 78 LMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 78 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...+..+|.++|.+|+||||+|..+.+.+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 334566799999999999999999999998
No 366
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.61 E-value=0.0042 Score=51.96 Aligned_cols=45 Identities=22% Similarity=0.094 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
++.|.|++|+|||+|+.+++.... ..-..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999988762 2234577887654 34444433
No 367
>PHA02244 ATPase-like protein
Probab=96.61 E-value=0.0046 Score=56.73 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCccccchhHHHH----HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDR----VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~----l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|....+.. +..++ .....|.|+|++|+|||+||.+++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l--~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIV--NANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3556776555543 33444 233467889999999999999999886
No 368
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0056 Score=50.91 Aligned_cols=26 Identities=38% Similarity=0.335 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998664
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.59 E-value=0.018 Score=52.45 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCC-CCcCCHHH-HHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNES-WNSRSLQE-KSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~~~-~~~~l 158 (371)
...+++++|++|+||||++..++..+. ..-..+..+...... ...+-+.......+...-. ....++.. ....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 357999999999999999999998873 222345555543211 1111122333343332110 11222222 22333
Q ss_pred HHHhCCCceEEEEeCCCC
Q 043737 159 VKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~~ 176 (371)
........=++++|-.-.
T Consensus 190 ~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 190 QAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHhCCCCEEEEeCCCC
Confidence 333334444888898753
No 370
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0049 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 371
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.55 E-value=0.0019 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|+|++|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 372
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.55 E-value=0.0018 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998775
No 373
>PRK15453 phosphoribulokinase; Provisional
Probab=96.54 E-value=0.016 Score=51.24 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC--CHHHHHHHH--HHHhc--cCCCCCCcCCHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL--QLEQIQGSI--AKKIN--LFNESWNSRSLQEKS 155 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l--~~~l~--~~~~~~~~~~~~~~~ 155 (371)
+..+|+|.|.+|+||||+++.+.+.+. ..-.....++...-. +..+.-... ...-+ ...-.....+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 467999999999999999999987762 211234555544322 222222211 11222 222113555666666
Q ss_pred HHHHHHhCC
Q 043737 156 QDIVKNMSN 164 (371)
Q Consensus 156 ~~l~~~l~~ 164 (371)
+.+..+..+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 666665543
No 374
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.53 E-value=0.0083 Score=46.93 Aligned_cols=37 Identities=19% Similarity=-0.055 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA 122 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 122 (371)
.+.|.|+.|+|||+.+..++.... .......++|+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~-~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL-DSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH-hcccCCCEEEEcC
Confidence 478999999999999998888872 2234456677643
No 375
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.53 E-value=0.0012 Score=67.10 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCceEEEEeCCCCcccc---cccc-cccCCCCCCCcEEEEecCchHHHhhccCCCceeecCCChH-HHHHHHHHHhCCCC
Q 043737 164 NKKFVLLLDHIWELVDL---SQVG-LPVPCRTSASNKTVFTARELEVCGQMEAHKSFKVERLGYE-DAWKLFEEKVGKEI 238 (371)
Q Consensus 164 ~~~~LlVlDdv~~~~~~---~~~~-~~l~~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~-ea~~ll~~~~~~~~ 238 (371)
..+.|+++|++....+. ..+. ..+......++.+|+||....+.........+.-..+..+ +......+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~--- 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLK--- 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECC---
Confidence 46789999999754332 1121 1111112357889999998776432211111111111111 11110000000
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhcc
Q 043737 239 LDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSS 289 (371)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~ 289 (371)
+.+. ...+-.|++.+ |+|-.+..-|..+.. .....+..+++.|...
T Consensus 478 -G~~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 478 -GIPG--ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred -CCCC--CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 1111 22477787776 788777777776654 3344555555555443
No 376
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.50 E-value=0.01 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887
No 377
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.50 E-value=0.013 Score=58.10 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
..++..|.|.+|+||||++..++..+......-...+.+..........+.+.+.
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 3569999999999999999988877522111112345555544433444444443
No 378
>PF13479 AAA_24: AAA domain
Probab=96.49 E-value=0.012 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 043737 84 GIVGLYGMGEVGKTTLLTQI 103 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~ 103 (371)
-.+.|+|++|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999876
No 379
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.48 E-value=0.0025 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++|.|++|+|||||++.++..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 380
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.48 E-value=0.0042 Score=49.37 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
++|.|+|+.|+|||||+..+++.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4789999999999999999999983 34444455565554
No 381
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.48 E-value=0.0033 Score=56.95 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 133 (371)
+++++.|-||+||||+|...+-...+ .-..++-++.+...++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHHHhC
Confidence 68999999999999999888877732 223467777666655555443
No 382
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.48 E-value=0.0044 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|+|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 383
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.014 Score=50.46 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..=|-.+++++|.+...- +.++-|.++|++|.|||-+|++++++-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 345677788887766531 356789999999999999999999886
No 384
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.47 E-value=0.0048 Score=49.92 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 69 STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 69 ~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|...+.+ +.+++.|++|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 455777777733 799999999999999999998764
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.47 E-value=0.0031 Score=52.75 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|+|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998775
No 386
>PRK00625 shikimate kinase; Provisional
Probab=96.46 E-value=0.0028 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|+|++|+||||+++.+++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 387
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.017 Score=51.44 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=54.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCC-------CCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCCcCCH-----
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTP-------NDFDFVIWVVASKD-LQLEQIQGSIAKKINLFNESWNSRSL----- 151 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~-------~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~----- 151 (371)
.+.|+|++|+|||||+..++-.+...+ .....++++++... .++-.=++.+..++++++.+....+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 667789999999999987765543222 23347788877543 34555566777777775433222111
Q ss_pred -------H--HHHHHHHHHhC-CCceEEEEeCCC
Q 043737 152 -------Q--EKSQDIVKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 -------~--~~~~~l~~~l~-~~~~LlVlDdv~ 175 (371)
- .+...+...+. .++-++|+|-+-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 0 12233333333 466799999863
No 388
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.46 E-value=0.014 Score=57.56 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|+|+.|+|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999987665
No 389
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.021 Score=53.78 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+++++|+.|+||||++..++.... .......+.++.... .....+-+..+.+.++.+.. ...+..+....+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al-~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML-H 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-H
Confidence 356899999999999999998887641 112223344444332 12333445556666654432 223333333222 2
Q ss_pred HhCCCceEEEEeCC
Q 043737 161 NMSNKKFVLLLDHI 174 (371)
Q Consensus 161 ~l~~~~~LlVlDdv 174 (371)
.+.+. -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 33433 36667765
No 390
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.46 E-value=0.012 Score=57.26 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC-----
Q 043737 72 DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW----- 146 (371)
Q Consensus 72 ~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~----- 146 (371)
.+|+..+. ...+|+|+|..|+||||=..+++... ...-++.+-..-......-.+.+.+...++......
T Consensus 362 ~~ll~~ir--~n~vvvivgETGSGKTTQl~QyL~ed---GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 362 DQLLSVIR--ENQVVVIVGETGSGKTTQLAQYLYED---GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHh--hCcEEEEEecCCCCchhhhHHHHHhc---ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 44455553 35699999999999987666665554 333334443333333334566777777775422110
Q ss_pred -----C-------cCCHHHHHHHHHHHhC----CCceEEEEeCCCCccccccc-----ccccCCCCCCCcEEEEecCch
Q 043737 147 -----N-------SRSLQEKSQDIVKNMS----NKKFVLLLDHIWELVDLSQV-----GLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 147 -----~-------~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~~~~~~-----~~~l~~~~~~~~~iliTsR~~ 204 (371)
. -.+.+ -.+++.|. .+--.+|+|++++...-..+ ...+ ......++||||-.-
T Consensus 437 RFEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l--arRrdlKliVtSATm 510 (1042)
T KOG0924|consen 437 RFEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL--ARRRDLKLIVTSATM 510 (1042)
T ss_pred EeeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH--HhhccceEEEeeccc
Confidence 0 01111 22344443 34559999999865332221 1111 344577899998763
No 391
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.45 E-value=0.0028 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|.+|+||||||..+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 392
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.012 Score=55.54 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-----ccCCCCCCcCCHH----
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI-----NLFNESWNSRSLQ---- 152 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l-----~~~~~~~~~~~~~---- 152 (371)
....++|.|++|+|||||+..++... ....++++..-....++..+....+... ..... ....+.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHHHH
Confidence 44589999999999999998887654 2223455544333344555444333322 11111 111111
Q ss_pred --HHHHHHHHHh--CCCceEEEEeCCCC
Q 043737 153 --EKSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 153 --~~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
.....+.+++ +++.+|+++||+-+
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122223333 47899999999854
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.44 E-value=0.0027 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|.|+.|+|||||++.+++..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 394
>PRK14528 adenylate kinase; Provisional
Probab=96.43 E-value=0.0058 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++|.|++|+||||+|+.++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998776
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.42 E-value=0.005 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|+|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 396
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.41 E-value=0.01 Score=56.40 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|.+|+|||+|+.++++... +.+-+.++++-++... ...++...+...-.... -.....++..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 456899999999999999999998873 2355677777665443 45566666654321110 0001122221
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCCCC
Q 043737 154 ---KSQDIVKNM---SNKKFVLLLDHIWE 176 (371)
Q Consensus 154 ---~~~~l~~~l---~~~~~LlVlDdv~~ 176 (371)
....+.+++ .++.+||++|++-+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 223334444 37899999999954
No 397
>PLN02165 adenylate isopentenyltransferase
Probab=96.41 E-value=0.0038 Score=56.55 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.3
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 79 MEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 79 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+....+++|.|+.|+|||+||..++..+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34556799999999999999999999886
No 398
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.40 E-value=0.0029 Score=58.13 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCC---C-CCeEEEEEeC---------CcC--CHHHHHHH-------------
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPN---D-FDFVIWVVAS---------KDL--QLEQIQGS------------- 134 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~-f~~~~wv~~~---------~~~--~~~~~~~~------------- 134 (371)
.-+++|+|.+|+||||+.+++......... . -.+.+-+..+ -.+ +-..++.+
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 348999999999999999998877521111 0 0122222110 011 11133333
Q ss_pred HHHHhccCCCC-----CCcCCHH-HHHHHHHHHhCCCceEEEEeCCCCccc-c--cccccccC-CCCCCCcEEEEecCch
Q 043737 135 IAKKINLFNES-----WNSRSLQ-EKSQDIVKNMSNKKFVLLLDHIWELVD-L--SQVGLPVP-CRTSASNKTVFTAREL 204 (371)
Q Consensus 135 l~~~l~~~~~~-----~~~~~~~-~~~~~l~~~l~~~~~LlVlDdv~~~~~-~--~~~~~~l~-~~~~~~~~iliTsR~~ 204 (371)
+++..++.... ....+.+ .--..+.+.+.+++-++++|.+....+ . ..+...+. .....++.+++.|+.+
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 33333332111 1112222 234556677778888999999864322 1 11111111 1233566777767767
Q ss_pred HHHhhccCCCce
Q 043737 205 EVCGQMEAHKSF 216 (371)
Q Consensus 205 ~~~~~~~~~~~~ 216 (371)
.+.+.+.+...+
T Consensus 569 Ev~~AL~PD~li 580 (593)
T COG2401 569 EVGNALRPDTLI 580 (593)
T ss_pred HHHhccCCceeE
Confidence 777666555443
No 399
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.40 E-value=0.0044 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|++|+||||+|+.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 400
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.40 E-value=0.0042 Score=54.13 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=24.0
Q ss_pred EEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 88 LYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 88 I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
|.||+|+||||+++.+.+.. ......+..+++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEcchH
Confidence 68999999999999999998 333345666665543
No 401
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.39 E-value=0.0025 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999886
No 402
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.37 E-value=0.0072 Score=46.54 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|.+.|.-|+||||+++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999999987
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.0071 Score=51.37 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
.|+|+|-||+||||+|..++.++. ..+-..++-++...+.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCCh
Confidence 589999999999999999777763 222235666776665543
No 404
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.0064 Score=55.14 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
.+++++.|-||+||||+|...+-.+. .....++-++.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777763 22244777777666666555544
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.02 Score=54.90 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..+++++|+.|+||||++.+++..+. .......+..+.... ..+..+-+..+...++.... ...+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--ccCCchhHHHHH-Hh
Confidence 46999999999999999999998762 111122455555443 22334455555666654322 111222222222 23
Q ss_pred hCCCceEEEEeCCC
Q 043737 162 MSNKKFVLLLDHIW 175 (371)
Q Consensus 162 l~~~~~LlVlDdv~ 175 (371)
+.++ -.+++|-.-
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 3333 377777764
No 406
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.35 E-value=0.0046 Score=56.54 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+..+..+.-.+.+.+..-+.+.|++|+||||+|+.+..-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5679999998887765544444579999999999999999997776
No 407
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0039 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998774
No 408
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.34 E-value=0.0027 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 409
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.34 E-value=0.0038 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999886
No 410
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.33 E-value=0.0048 Score=51.69 Aligned_cols=36 Identities=22% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 71 ~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..++..... ....++|.|+.|+|||||++.++...
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3334443333 35689999999999999999998776
No 411
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.046 Score=54.21 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=34.8
Q ss_pred ccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 65 VGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++..+..+.+.+... -..++.++|++|+||||+++.++.++
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l 455 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL 455 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh
Confidence 56677777777777542 34688999999999999999999998
No 412
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.32 E-value=0.015 Score=54.83 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|+.|+|||||++.++... ..+.+++.-++... .+.++...++..-+... -......+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999988654 22455555555443 34556655544321110 0001111211
Q ss_pred ---HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 ---KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ---~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++.+|+++||+-+.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 112233333 579999999999543
No 413
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.32 E-value=0.014 Score=51.49 Aligned_cols=96 Identities=8% Similarity=0.083 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccC-CCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCC----CCCcCCHHH--
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLH-TPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNE----SWNSRSLQE-- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~----~~~~~~~~~-- 153 (371)
....++|.|.+|+|||+|+.+++++... .+.+-+.++++-+++.. ...++..++...=..... ......+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4458899999999999999998877621 12334677887776543 456666666543211100 001111111
Q ss_pred ----HHHHHHHHh---CCCceEEEEeCCCCc
Q 043737 154 ----KSQDIVKNM---SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ----~~~~l~~~l---~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ .++++|+++||+-+.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 122233443 368999999998543
No 414
>PRK13947 shikimate kinase; Provisional
Probab=96.32 E-value=0.0034 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+++.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 415
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.32 E-value=0.0032 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++++|.|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 416
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.31 E-value=0.0027 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|+|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998886
No 417
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.30 E-value=0.003 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 418
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0031 Score=50.96 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQIN 104 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~ 104 (371)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 419
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.30 E-value=0.013 Score=51.34 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=43.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCC--HHHHHHHHHHH----hccCCCCCCcCCHHHHHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQ--LEQIQGSIAKK----INLFNESWNSRSLQEKSQDI 158 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~l 158 (371)
+|+|.|.+|+||||++..+.+.+. ..-..+..++...-.. -...-..+... .....-.....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 489999999999999999988872 1112344554433222 11222222221 12222112455666666777
Q ss_pred HHHhCCCc
Q 043737 159 VKNMSNKK 166 (371)
Q Consensus 159 ~~~l~~~~ 166 (371)
+.+..++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 76666543
No 420
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.29 E-value=0.0037 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|+|.|..|+|||||++.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999776
No 421
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.28 E-value=0.036 Score=48.91 Aligned_cols=106 Identities=12% Similarity=0.159 Sum_probs=67.4
Q ss_pred CCCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
..+.|+|-..- .++...+.. ...+.+.++|.+|+|||+-++++++.. +..+.+..+...+...+...+..
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICA 141 (297)
T ss_pred ccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHH
Confidence 34566665432 223333321 234489999999999999999998776 23334455555566666666655
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL 177 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 177 (371)
..... ......+....+...+.+..-+++.|+.+..
T Consensus 142 ~~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 142 AAFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred HHhcc----cchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 55433 3344555666666677787889999998754
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.28 E-value=0.0036 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
.+.++|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999998874
No 423
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.27 E-value=0.015 Score=55.11 Aligned_cols=93 Identities=14% Similarity=0.249 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|.+|+|||+|+.+++.... .++-+.++++-++... .+.++.+.+...=.... -.....++..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999999999887762 2223456666665443 45666666665321110 0001121221
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCCCC
Q 043737 154 ---KSQDIVKNM---SNKKFVLLLDHIWE 176 (371)
Q Consensus 154 ---~~~~l~~~l---~~~~~LlVlDdv~~ 176 (371)
..-.+.+++ +++++||++|++-+
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 122334444 67899999999954
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.011 Score=47.97 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHH-HHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQ-EKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~l~~ 160 (371)
...+++|.|+.|.|||||++.+.... ....+.+++........ ........+..... -+.+ ...-.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q----lS~G~~~r~~l~~ 93 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ----LSGGQRQRVALAR 93 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee----CCHHHHHHHHHHH
Confidence 34699999999999999999998765 22344455432211110 01112222222111 1112 22222344
Q ss_pred HhCCCceEEEEeCCCCccc---ccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 161 NMSNKKFVLLLDHIWELVD---LSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
.+-..+-++++|+.....+ ...+...+......+..++++|.......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4445567999999864433 22222222101122467777777765544
No 425
>COG4240 Predicted kinase [General function prediction only]
Probab=96.26 E-value=0.03 Score=47.40 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc---CCCCCCcCCHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL---FNESWNSRSLQEKSQD 157 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~ 157 (371)
+++-+++|+|+-|+||||++..+...+. .++. ..+...++..-+-...-...++++... ........++.-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~-~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLA-AKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHH-Hhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 4566899999999999999999998883 2221 366666655444333333344444211 1111134455555555
Q ss_pred HHHHhCCCce
Q 043737 158 IVKNMSNKKF 167 (371)
Q Consensus 158 l~~~l~~~~~ 167 (371)
+....+++..
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 6666666544
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.25 E-value=0.0043 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.269 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998876
No 427
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.25 E-value=0.032 Score=54.67 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCC-------------CCCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFN-------------ESWNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~-------------~~~~~ 148 (371)
...++.|.|++|+|||+|+.+++.... ..-..++|++.... ..++.... ..++... .....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 356889999999999999999987762 23457888877653 44444433 3333211 00122
Q ss_pred CCHHHHHHHHHHHhCC-CceEEEEeCCC
Q 043737 149 RSLQEKSQDIVKNMSN-KKFVLLLDHIW 175 (371)
Q Consensus 149 ~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 175 (371)
...++....+.+.+.. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2345555666665543 45589999985
No 428
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.22 E-value=0.0073 Score=55.36 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+||.++.+..|.-.+.+....-|.|.|+.|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999998888777766556678899999999999999998766
No 429
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.22 E-value=0.023 Score=53.65 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|..|+|||||+++++... ..+.+++.-++... ...++....+..-+... -.....++..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999988765 12345555554433 34455544443322110 0001111111
Q ss_pred ---HHHHHHHHh--CCCceEEEEeCCCC
Q 043737 154 ---KSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 154 ---~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
..-.+.+++ +++.+|+++||+-+
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122233333 57899999999954
No 430
>PRK13949 shikimate kinase; Provisional
Probab=96.22 E-value=0.0043 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+|+|++|+||||+++.++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 431
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.22 E-value=0.011 Score=53.87 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCccccchhHHHH---HHHHHhcCC--ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDR---VWRCLMEEQ--MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~---l~~~L~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+||..+..+. +++.+.+.+ .+.+.+.|++|+|||+||..+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4678998765443 455555543 5899999999999999999999998
No 432
>PRK14530 adenylate kinase; Provisional
Probab=96.22 E-value=0.004 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+|.|++|+||||+++.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998887
No 433
>PRK05922 type III secretion system ATPase; Validated
Probab=96.21 E-value=0.017 Score=54.43 Aligned_cols=92 Identities=10% Similarity=0.172 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC-CcCCHHHHHHHHHHHhccCCCC----CCcCCHHH--
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS-KDLQLEQIQGSIAKKINLFNES----WNSRSLQE-- 153 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~-- 153 (371)
.....++|.|+.|+|||||++.++... . . +...+..++ ......+.+.+..........- ....++..
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~---~-~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS---K-S-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC---C-C-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 345579999999999999999998764 1 2 223332232 2334455665555433221100 01111111
Q ss_pred ----HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 ----KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ----~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++++|+++|++-+.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122233333 478999999999543
No 434
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.20 E-value=0.0071 Score=51.24 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|+|.+|+||||||+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 435
>PRK14529 adenylate kinase; Provisional
Probab=96.20 E-value=0.023 Score=48.87 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-e-EEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-F-VIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
.|+|.|++|+||||+++.++.... -.+.+ + ++.-.+..........+.++..= .....+.....+.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l 72 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETL 72 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHH
Confidence 378899999999999999998872 12222 1 11111222222223333333221 2223334455555555
Q ss_pred CCC-ceEEEEeCCCC
Q 043737 163 SNK-KFVLLLDHIWE 176 (371)
Q Consensus 163 ~~~-~~LlVlDdv~~ 176 (371)
.+. ..=+|||.+-.
T Consensus 73 ~~~~~~g~iLDGfPR 87 (223)
T PRK14529 73 KQDGKNGWLLDGFPR 87 (223)
T ss_pred hccCCCcEEEeCCCC
Confidence 431 34599999853
No 436
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.20 E-value=0.021 Score=54.16 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC----CCCcCCHHH---
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE----SWNSRSLQE--- 153 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~--- 153 (371)
.....++|.|+.|+|||||++.++... .. ...+++..-.+...+.++.+.+...-+.... .....++..
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT---QC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 355689999999999999999998765 11 1244444434444566666666543221100 001111111
Q ss_pred ---HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 ---KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ---~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++.+|+++|++-+.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122233333 478999999998543
No 437
>PRK08149 ATP synthase SpaL; Validated
Probab=96.20 E-value=0.026 Score=53.27 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC-CcCCHHHHHHHHHHHhccC-----CCCCCcCCHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS-KDLQLEQIQGSIAKKINLF-----NESWNSRSLQ--- 152 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~--- 152 (371)
+...++|.|++|+|||||+..++... ..+.++...+. ....+..+........... ... ...++.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~-sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT-SDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC-CCCCHHHHH
Confidence 45589999999999999999887654 22333333333 2334566666665532211 111 111111
Q ss_pred ---HHHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 153 ---EKSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 153 ---~~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
.....+.+++ +++++||++||+-+.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1222233333 488999999999543
No 438
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.04 Score=55.59 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINL 141 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~ 141 (371)
.++++++|+.|+||||++.+++..+. .......+..+..... ....+-+....+.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gv 243 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGV 243 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCC
Confidence 46999999999999999999987762 1111234555554322 1233444555555554
No 439
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.088 Score=46.35 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++=|-+..+++|.+...= ..++-|.++|++|.|||-||+++++.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 345678888888777641 245688899999999999999999886
No 440
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.18 E-value=0.013 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|+.|+||||+++.+.+.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 441
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.0071 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....++|+|++|+|||||++.++--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45699999999999999999987664
No 442
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.16 E-value=0.013 Score=52.79 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=37.6
Q ss_pred CCCCccccchhHHHH---HHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 59 PLPPTVVGLQSTFDR---VWRCLMEE--QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 59 ~~~~~~vGR~~~~~~---l~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..+.|||..+..+. +++.+.++ ..+.|.+.||+|+|||+||..+++.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 445779997654433 45555544 35799999999999999999999998
No 443
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.16 E-value=0.021 Score=55.64 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=71.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCC-----CCCeEEEEEeCC-----cCC------------HHHHHHHHHHHh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPN-----DFDFVIWVVASK-----DLQ------------LEQIQGSIAKKI 139 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~f~~~~wv~~~~-----~~~------------~~~~~~~l~~~l 139 (371)
....|+|.|+-|+|||||.+.+........+ ..-.+.|+.-.. ..+ .....+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4458999999999999999999666521111 111233332111 001 134455555566
Q ss_pred ccCCCCC----CcCCHHHHHHHH-HHHhCCCceEEEEeCCCCcccccc---cccccCCCCCCCcEEEEecCchHHHhhcc
Q 043737 140 NLFNESW----NSRSLQEKSQDI-VKNMSNKKFVLLLDHIWELVDLSQ---VGLPVPCRTSASNKTVFTARELEVCGQME 211 (371)
Q Consensus 140 ~~~~~~~----~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~~~~~---~~~~l~~~~~~~~~iliTsR~~~~~~~~~ 211 (371)
+.+.... ..-+-++..+.. ...+-.++-+||||+--+..+++. +...+. .-.+.||+.|-++.+.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~---~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL---DFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhc
Confidence 5543321 122333433333 344456788999999766544333 222222 22346777888877765432
Q ss_pred CCCceeec
Q 043737 212 AHKSFKVE 219 (371)
Q Consensus 212 ~~~~~~l~ 219 (371)
...+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 3444444
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.15 E-value=0.0054 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++++|+|+.|+|||||+..++..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 445
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.15 E-value=0.0077 Score=55.32 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=39.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+||-++....|...+.+....-|.|.|+.|+||||+|+.+++-+
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999988888888877777778899999999999999987765
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.15 E-value=0.0052 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...+.++|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999998654
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.14 E-value=0.008 Score=55.67 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=53.3
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHH--HHHHHhccCCCCCCcCCH
Q 043737 74 VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQG--SIAKKINLFNESWNSRSL 151 (371)
Q Consensus 74 l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~ 151 (371)
+.+++. .....|.|+|+.|+||||++..++.........-..++.+.-.-......... ....+.. .....
T Consensus 126 ~~~~~~-~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~------v~~~~ 198 (358)
T TIGR02524 126 IIDAIA-PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE------IPRHL 198 (358)
T ss_pred HHHHHh-ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee------ccccc
Confidence 344443 34579999999999999999999887621111111333332111111111100 0000100 11111
Q ss_pred HHHHHHHHHHhCCCceEEEEeCCCCccccc
Q 043737 152 QEKSQDIVKNMSNKKFVLLLDHIWELVDLS 181 (371)
Q Consensus 152 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~ 181 (371)
......++..++..+-.+++.++.+.+...
T Consensus 199 ~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 199 NNFAAGVRNALRRKPHAILVGEARDAETIS 228 (358)
T ss_pred cCHHHHHHHHhccCCCEEeeeeeCCHHHHH
Confidence 234455666777788899999887666554
No 448
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.14 E-value=0.0045 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998886
No 449
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.14 E-value=0.0088 Score=58.91 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++..+-|.+..+.|.++... ....+|+|+|++|+||||+|+.++..+
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 45667787777766666543 344589999999999999999999988
No 450
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.14 E-value=0.012 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|+.|+||||+++.+++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988
No 451
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.14 E-value=0.0064 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++++|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998875
No 452
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.13 E-value=0.0071 Score=51.64 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=26.5
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 78 LMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 78 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...+.++|++.|+.|+|||||..++++..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 334678999999999999999999999886
No 453
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.13 E-value=0.034 Score=50.57 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC-CcCCHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS-KDLQLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|+.|+|||||++.++... . .+..+..-+. ....+..+.......-+... -......+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44688999999999999999888765 2 2233333333 33355565555554322110 0001111111
Q ss_pred ---HHHHHHHHh--CCCceEEEEeCCCC
Q 043737 154 ---KSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 154 ---~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
..-.+.+++ +++.+|+++||+.+
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 112222333 57899999999854
No 454
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.11 E-value=0.022 Score=53.99 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|.+|+|||+|+.+++.... .++-..+++.-++... .+.++.+++...=.... -.....++..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999999999987762 2233466777665543 45666666654321110 0001222221
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCCCCc
Q 043737 154 ---KSQDIVKNM---SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ---~~~~l~~~l---~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++++||++|++-+.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 122333444 568999999999543
No 455
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.11 E-value=0.0062 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++..+.++||+|+||||+.+.+..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999988
No 456
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.10 E-value=0.0048 Score=52.33 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
+.+.++.+.|.+|+||||++..+...+ . ....+.++...-.........+...-..............+...+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~---~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF---G--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc---c--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999998876 2 45667776543221111122222211000000011112233444444
Q ss_pred HhCCCceEEEEeCCC
Q 043737 161 NMSNKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~ 175 (371)
..-.+++=+|+|..-
T Consensus 88 ~a~~~~~nii~E~tl 102 (199)
T PF06414_consen 88 YAIENRYNIIFEGTL 102 (199)
T ss_dssp HHHHCT--EEEE--T
T ss_pred HHHHcCCCEEEecCC
Confidence 444566677778764
No 457
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.10 E-value=0.01 Score=54.40 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|+...+.++.+.+.. .....|.|+|..|+||+++|+.+...-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4589999999988888764 345678999999999999999887543
No 458
>PLN02200 adenylate kinase family protein
Probab=96.09 E-value=0.0059 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998876
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.07 E-value=0.0068 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQIN 104 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~ 104 (371)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999875
No 460
>PRK13768 GTPase; Provisional
Probab=96.07 E-value=0.0089 Score=52.71 Aligned_cols=37 Identities=27% Similarity=0.117 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
.+++|.|++|+||||++..+...+. ..-..+..++..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~---~~g~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE---EQGYDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH---hcCCceEEEECC
Confidence 5789999999999999999988873 222345555543
No 461
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.06 E-value=0.023 Score=58.07 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++.|.|.+|+||||++..+...+
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~ 392 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAW 392 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHH
Confidence 4688999999999999999988776
No 462
>PRK13975 thymidylate kinase; Provisional
Probab=96.06 E-value=0.0057 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..|+|.|+.|+||||+++.+++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999998
No 463
>PRK06761 hypothetical protein; Provisional
Probab=96.06 E-value=0.013 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|.|++|+||||+++.+++.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999998
No 464
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.05 E-value=0.022 Score=53.69 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC----CCCcCCHH-H---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE----SWNSRSLQ-E--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~-~--- 153 (371)
....++|.|+.|+|||||+..++... . ....++...-.+...+.++....+..-+.... ......+. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999998887665 2 22233333333333455565554433221100 00111111 1
Q ss_pred --HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 --KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 --~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
....+.+++ +++.+|+++||+-+.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122233443 578999999998543
No 465
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.05 E-value=0.016 Score=54.82 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH---
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE--- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~--- 153 (371)
....++|.|.+|+|||+|+.+++.... +.+-+.++++-++... ...++.+++...=.... -.....++..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 456899999999999999999988862 2234677787776543 45566666554311110 0001121221
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCCCCc
Q 043737 154 ---KSQDIVKNM---SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ---~~~~l~~~l---~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++++|+++||+-+.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 122333444 468999999999543
No 466
>PRK10646 ADP-binding protein; Provisional
Probab=96.04 E-value=0.014 Score=46.82 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 68 QSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 68 ~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++..++-+.|.. ....+|.+.|.=|+||||+++.+++.+
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3455555555543 234589999999999999999999987
No 467
>PRK13946 shikimate kinase; Provisional
Probab=96.04 E-value=0.0067 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.|++.|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 468
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.0052 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043737 86 VGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~ 106 (371)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999866
No 469
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.005 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
+.|.++|.+|+||||+|+++++.++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 5788999999999999999999883
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.03 E-value=0.0055 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++|.|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 471
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.024 Score=48.14 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=60.5
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC--eEEEEEeCCcCCHHHH-----HHHHHHHhccCCCCC
Q 043737 74 VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD--FVIWVVASKDLQLEQI-----QGSIAKKINLFNESW 146 (371)
Q Consensus 74 l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~-----~~~l~~~l~~~~~~~ 146 (371)
+...|-+.......|.|++|+|||||.+.+++-.......|- .+.-++-+.. +... ...+...+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~dV----- 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMDV----- 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhhh-----
Confidence 444554455556889999999999999999888743223332 3333322111 0000 0111111111
Q ss_pred CcCCHHHHHHHHHHHhC-CCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCch
Q 043737 147 NSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 147 ~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
.+..-...-+....+ -.+=++|+|++-..++...+.. ..+.|.+++.|..-.
T Consensus 201 --ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~t----a~~~GVkli~TaHG~ 253 (308)
T COG3854 201 --LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILT----ALHAGVKLITTAHGN 253 (308)
T ss_pred --cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHH----HHhcCcEEEEeeccc
Confidence 111111111222222 2466999999977665544433 344687877776543
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.02 E-value=0.0064 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 473
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.01 E-value=0.021 Score=52.20 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=28.5
Q ss_pred HHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 72 DRVWRCLM--EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 72 ~~l~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+.+.+. .+...+|+|.|++|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 2567899999999999999999998887
No 474
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.01 E-value=0.031 Score=49.35 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhccCCCCCCCeE-EEEEeCCc-CCHHHHHHHHHHHhccCC----CCCCcCCHHH-
Q 043737 82 QMGIVGLYGMGEVGKTTLL-TQINKKFLHTPNDFDFV-IWVVASKD-LQLEQIQGSIAKKINLFN----ESWNSRSLQE- 153 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~l~~~l~~~~----~~~~~~~~~~- 153 (371)
+...++|.|.+|+|||+|| ..+++.. ..+.+ +++-++.. ....++.+.+...=.... -......+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4458899999999999996 4454432 22333 55555554 345566666654321100 0001111111
Q ss_pred -----HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 -----KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 -----~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
..-.+.+++ +++.+|+++||+.+.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112222222 478999999999544
No 475
>PRK14531 adenylate kinase; Provisional
Probab=96.01 E-value=0.0062 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+|.|++|+||||+++.++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998886
No 476
>PRK13948 shikimate kinase; Provisional
Probab=96.00 E-value=0.0071 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+.|+|.|+.|+||||+++.+++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999887
No 477
>PRK14532 adenylate kinase; Provisional
Probab=96.00 E-value=0.0057 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37889999999999999998876
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.99 E-value=0.023 Score=55.69 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC----------------
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---------------- 145 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---------------- 145 (371)
..+++.|.|.+|+|||+|+.+++.... ..+-..++|++.... ..++...+.. ++.....
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCCeEEEEecCccc
Confidence 457999999999999999999987652 222356888887663 4444444322 2321000
Q ss_pred -----CCcCCHHHHHHHHHHHhCC-CceEEEEeCCCC
Q 043737 146 -----WNSRSLQEKSQDIVKNMSN-KKFVLLLDHIWE 176 (371)
Q Consensus 146 -----~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 176 (371)
....+.+.....+.+.+.. +.-.+|+|.+..
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0112334455555555543 445799999853
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.98 E-value=0.024 Score=47.86 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|.|+.|+|||||.+.++.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345699999999999999999997654
No 480
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.98 E-value=0.0065 Score=55.13 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|.+.|++|+||||+|+.+++++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998876
No 481
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.97 E-value=0.043 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+...++|+|+.|+|||||++-+....
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 355689999999999999999887665
No 482
>PHA02774 E1; Provisional
Probab=95.97 E-value=0.095 Score=50.96 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe
Q 043737 69 STFDRVWRCLMEE-QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA 122 (371)
Q Consensus 69 ~~~~~l~~~L~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 122 (371)
..+..|..++... +...+.|+||+|+|||.+|..+++-+ . ...+.|++.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L---~--G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL---K--GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEEEEC
Confidence 4556666666543 34689999999999999999999887 2 234666765
No 483
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.96 E-value=0.005 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+++|.+|+||||+|+.++..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887
No 484
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.95 E-value=0.069 Score=50.14 Aligned_cols=79 Identities=23% Similarity=0.211 Sum_probs=59.6
Q ss_pred CccccchhHHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-------CHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---EEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-------QLEQI 131 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-------~~~~~ 131 (371)
.--|||+.+++.|.+.|. ++....-+|.|.=|+|||.+.+.+.+... ...| .+..+.++... ....+
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~--~~~f-vvs~v~ls~e~~lh~~~g~~~~~ 101 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERAL--EKGF-VVSEVDLSPERPLHGTGGQLEAL 101 (416)
T ss_pred ceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHH--HcCC-EEEEEecCCCcccccccccHHHH
Confidence 335999999999988876 36677889999999999999998887762 3333 56667666532 35578
Q ss_pred HHHHHHHhccCC
Q 043737 132 QGSIAKKINLFN 143 (371)
Q Consensus 132 ~~~l~~~l~~~~ 143 (371)
+++|...+....
T Consensus 102 Yr~l~~nL~t~~ 113 (416)
T PF10923_consen 102 YRELMRNLSTKT 113 (416)
T ss_pred HHHHHHhcCCCC
Confidence 888888887543
No 485
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.93 E-value=0.015 Score=48.99 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=31.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|-+.....+.-+... ..-+.+.|++|+|||++|+.+..-+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3567887776666555543 4689999999999999999987665
No 486
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.93 E-value=0.018 Score=48.84 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|.|+.|+||||+++.+.+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.91 E-value=0.0064 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 043737 86 VGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|+|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998875
No 488
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.91 E-value=0.013 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-.++|.||+|+|||||.++++.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3478999999999999999999876
No 489
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.90 E-value=0.028 Score=55.38 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|....+.++.+.+.. .....|.|+|+.|+|||++|+.+.+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 46789999999998887754 344578899999999999999998775
No 490
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.048 Score=46.38 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-+-+|-||.|+|||||+..+.-+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44588999999999999999987775
No 491
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.90 E-value=0.014 Score=53.49 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 64 VVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|+...+.++.+.+.. .....|.|+|+.|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 47888778887777654 345678999999999999999887654
No 492
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.90 E-value=0.035 Score=52.47 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCcCCHHH--
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNSRSLQE-- 153 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~~~~~~-- 153 (371)
.+...++|.|..|+|||||...++... ..+.+++.-++... .+.++....+..-+... -......+..
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 345689999999999999999998775 22456666665543 45555544333211110 0001122221
Q ss_pred ----HHHHHHHHh--CCCceEEEEeCCCCc
Q 043737 154 ----KSQDIVKNM--SNKKFVLLLDHIWEL 177 (371)
Q Consensus 154 ----~~~~l~~~l--~~~~~LlVlDdv~~~ 177 (371)
....+.+++ +++++|+++|++-+.
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112233333 589999999999543
No 493
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.86 E-value=0.009 Score=53.47 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
+.|+|+|-||+||||++..++..+.+ .. ..++-++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~--~G-~~VlliD~D~ 38 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE--MG-KKVMIVGCDP 38 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH--CC-CeEEEEeCCC
Confidence 46889999999999999999988842 22 2455555543
No 494
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.85 E-value=0.045 Score=52.06 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH------hccCCCCCCcCCHH--
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK------INLFNESWNSRSLQ-- 152 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~------l~~~~~~~~~~~~~-- 152 (371)
.....++|.|..|+|||||+..++... . ...+++++.-.......++....+.. ....... ......
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~---~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-~~~~~~r~ 230 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT---S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-DQPALMRI 230 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc---C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC-CCCHHHHH
Confidence 455799999999999999998887665 1 22345554333333455544332221 1111110 111111
Q ss_pred ---HHHHHHHHHh--CCCceEEEEeCCCC
Q 043737 153 ---EKSQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 153 ---~~~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
.....+.+++ +++++||++||+-+
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 1122233333 47899999999853
No 495
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.0095 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+++|+.|+||||+.+.+++.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 468899999999999999999998
No 496
>PLN02348 phosphoribulokinase
Probab=95.84 E-value=0.06 Score=49.98 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...+|+|.|.+|+||||||+.+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999987
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.83 E-value=0.026 Score=54.61 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred ccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC
Q 043737 65 VGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE 144 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~ 144 (371)
.|-..+..+....+......++.|+|+.|+||||+...+.+.+. ..-..++-+.-.-......+ .+....
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~---~~~~~iiTiEDpvE~~~~~~-----~q~~v~-- 293 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN---TPERNILTVEDPVEYQIEGI-----GQIQVN-- 293 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC---CCCCcEEEEcCCeeeecCCC-----ceEEEc--
Confidence 44433333333334445567999999999999999998887762 11112222211111111110 111110
Q ss_pred CCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccc
Q 043737 145 SWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQ 182 (371)
Q Consensus 145 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 182 (371)
..........++..|+..+=.+++.++-+.+....
T Consensus 294 ---~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~ 328 (486)
T TIGR02533 294 ---PKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQI 328 (486)
T ss_pred ---cccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 00011344566677777888999999977765443
No 498
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.82 E-value=0.0084 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|.|.|+.|+||||+|+.+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998876
No 499
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.0092 Score=47.91 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998887665
No 500
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.80 E-value=0.14 Score=46.89 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIA 136 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~ 136 (371)
+...++|.|+.|+|||+|++++++.. +-+.++++-++... .+.+++.++-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 44589999999999999999998764 23467777776543 4556666553
Done!