Query 043737
Match_columns 371
No_of_seqs 228 out of 2349
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.5E-43 2.2E-47 341.2 22.9 284 65-370 131-446 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.7E-38 1.6E-42 313.6 19.0 271 61-369 127-419 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-37 2.2E-41 326.3 26.1 291 58-369 120-426 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-35 2.2E-39 288.1 24.9 287 58-368 120-425 (591)
5 2qen_A Walker-type ATPase; unk 99.8 2E-19 6.8E-24 165.5 18.4 278 58-369 8-332 (350)
6 2fna_A Conserved hypothetical 99.8 3E-18 1E-22 158.0 20.4 279 60-369 11-340 (357)
7 1w5s_A Origin recognition comp 99.8 1.8E-18 6.2E-23 162.8 18.9 295 60-369 20-370 (412)
8 2v1u_A Cell division control p 99.7 6.1E-16 2.1E-20 144.1 20.8 291 60-369 17-350 (387)
9 2qby_B CDC6 homolog 3, cell di 99.7 5.4E-16 1.8E-20 144.5 20.1 288 61-369 19-338 (384)
10 1fnn_A CDC6P, cell division co 99.7 1.4E-15 4.8E-20 141.8 20.1 290 61-369 16-350 (389)
11 2qby_A CDC6 homolog 1, cell di 99.7 5.6E-16 1.9E-20 144.2 15.9 293 60-368 18-346 (386)
12 1njg_A DNA polymerase III subu 99.5 1.2E-13 4.1E-18 119.8 14.2 198 62-271 23-232 (250)
13 2chg_A Replication factor C sm 99.5 1.5E-13 5.2E-18 117.5 12.7 186 62-269 17-206 (226)
14 1hqc_A RUVB; extended AAA-ATPa 99.4 2.1E-12 7.2E-17 117.3 14.3 268 61-369 11-324 (324)
15 1sxj_B Activator 1 37 kDa subu 99.3 4E-12 1.4E-16 115.2 10.3 185 62-268 21-211 (323)
16 1iqp_A RFCS; clamp loader, ext 99.3 1.4E-11 4.8E-16 111.8 10.4 187 61-270 24-215 (327)
17 3te6_A Regulatory protein SIR3 99.2 6.1E-11 2.1E-15 106.2 11.0 170 63-235 21-212 (318)
18 2chq_A Replication factor C sm 99.2 1.2E-10 4.2E-15 105.2 11.7 181 62-268 17-205 (319)
19 1jr3_A DNA polymerase III subu 99.2 2.2E-10 7.6E-15 105.9 13.4 195 62-268 16-222 (373)
20 1jbk_A CLPB protein; beta barr 99.1 2E-10 6.7E-15 95.6 6.9 47 61-107 21-67 (195)
21 3bos_A Putative DNA replicatio 99.1 1.3E-10 4.4E-15 100.5 5.8 177 61-270 27-220 (242)
22 3pvs_A Replication-associated 99.0 5.7E-09 1.9E-13 98.4 15.2 180 61-269 25-217 (447)
23 1sxj_D Activator 1 41 kDa subu 99.0 1.6E-09 5.5E-14 99.3 10.4 195 61-266 36-234 (353)
24 2z4s_A Chromosomal replication 99.0 5.8E-09 2E-13 98.4 14.0 185 62-267 105-306 (440)
25 1sxj_A Activator 1 95 kDa subu 99.0 2.9E-09 1E-13 102.7 12.1 186 62-266 39-252 (516)
26 3h4m_A Proteasome-activating n 99.0 8.8E-09 3E-13 91.5 13.7 178 62-267 17-231 (285)
27 3pfi_A Holliday junction ATP-d 99.0 3E-08 1E-12 90.3 17.4 175 61-269 28-229 (338)
28 3uk6_A RUVB-like 2; hexameric 98.9 3.1E-08 1E-12 91.3 14.1 196 61-268 43-304 (368)
29 1sxj_E Activator 1 40 kDa subu 98.9 3.9E-09 1.3E-13 96.8 7.9 196 62-268 14-238 (354)
30 1l8q_A Chromosomal replication 98.8 1.8E-08 6.2E-13 91.3 11.8 180 61-266 10-207 (324)
31 1d2n_A N-ethylmaleimide-sensit 98.8 1.5E-07 5.1E-12 83.0 16.9 197 62-289 33-264 (272)
32 1a5t_A Delta prime, HOLB; zinc 98.8 9.6E-08 3.3E-12 86.8 15.1 171 67-266 7-204 (334)
33 3u61_B DNA polymerase accessor 98.8 6.3E-08 2.2E-12 87.6 13.3 181 61-269 25-218 (324)
34 1sxj_C Activator 1 40 kDa subu 98.8 4.1E-08 1.4E-12 89.5 11.3 180 62-264 25-209 (340)
35 3syl_A Protein CBBX; photosynt 98.8 3.2E-08 1.1E-12 88.9 10.2 150 63-236 32-219 (309)
36 2qz4_A Paraplegin; AAA+, SPG7, 98.7 1.3E-07 4.5E-12 82.7 13.6 183 62-269 6-224 (262)
37 1xwi_A SKD1 protein; VPS4B, AA 98.7 6.4E-07 2.2E-11 80.9 18.2 181 62-270 12-226 (322)
38 3d8b_A Fidgetin-like protein 1 98.7 3.5E-07 1.2E-11 83.9 15.5 181 62-269 84-297 (357)
39 2p65_A Hypothetical protein PF 98.7 4.7E-08 1.6E-12 80.6 8.6 47 61-107 21-67 (187)
40 3b9p_A CG5977-PA, isoform A; A 98.7 6.6E-07 2.2E-11 79.8 16.1 178 62-268 21-234 (297)
41 3vfd_A Spastin; ATPase, microt 98.7 6.6E-07 2.3E-11 83.0 16.6 181 62-269 115-328 (389)
42 3eie_A Vacuolar protein sortin 98.7 3.5E-07 1.2E-11 82.6 14.3 179 62-269 18-230 (322)
43 2qp9_X Vacuolar protein sortin 98.6 2.8E-07 9.5E-12 84.4 12.9 178 62-268 51-262 (355)
44 2gno_A DNA polymerase III, gam 98.6 2.1E-07 7.2E-12 83.2 11.7 148 66-234 1-152 (305)
45 3cf0_A Transitional endoplasmi 98.6 7.8E-07 2.7E-11 79.5 14.5 174 62-262 15-223 (301)
46 2zan_A Vacuolar protein sortin 98.6 1.5E-06 5.1E-11 82.0 16.3 183 62-269 134-347 (444)
47 4b4t_J 26S protease regulatory 98.6 3.4E-06 1.2E-10 77.4 17.6 170 63-260 149-354 (405)
48 3pxg_A Negative regulator of g 98.6 5.6E-07 1.9E-11 85.5 12.9 150 62-236 180-340 (468)
49 1qvr_A CLPB protein; coiled co 98.5 3E-07 1E-11 93.9 10.9 154 62-234 170-345 (854)
50 3hu3_A Transitional endoplasmi 98.5 1.7E-06 5.7E-11 82.4 14.6 179 62-267 204-415 (489)
51 3n70_A Transport activator; si 98.5 1.8E-07 6.1E-12 74.1 6.4 45 63-107 2-48 (145)
52 4b4t_L 26S protease subunit RP 98.5 3.9E-06 1.3E-10 78.2 15.7 170 63-260 182-387 (437)
53 4b4t_H 26S protease regulatory 98.5 7.5E-06 2.6E-10 76.2 17.4 170 63-260 210-415 (467)
54 1r6b_X CLPA protein; AAA+, N-t 98.5 1.6E-06 5.5E-11 87.6 14.0 157 62-234 186-362 (758)
55 1lv7_A FTSH; alpha/beta domain 98.5 6.3E-06 2.1E-10 71.8 15.9 178 62-266 12-224 (257)
56 4b4t_I 26S protease regulatory 98.4 7.2E-06 2.5E-10 75.6 15.7 170 63-260 183-388 (437)
57 2r62_A Cell division protease 98.4 8.6E-07 2.9E-11 77.8 9.1 173 62-261 11-219 (268)
58 4b4t_K 26S protease regulatory 98.4 6.5E-06 2.2E-10 76.5 15.4 170 63-260 173-379 (428)
59 1ofh_A ATP-dependent HSL prote 98.4 3E-06 1E-10 75.8 12.5 46 62-107 15-74 (310)
60 1in4_A RUVB, holliday junction 98.4 1.1E-05 3.7E-10 73.2 16.2 172 62-267 25-223 (334)
61 4b4t_M 26S protease regulatory 98.4 3.6E-06 1.2E-10 78.3 12.7 170 62-259 181-386 (434)
62 3pxi_A Negative regulator of g 98.4 4.6E-06 1.6E-10 84.2 14.4 150 62-236 180-340 (758)
63 3ec2_A DNA replication protein 98.3 5.1E-07 1.7E-11 74.2 4.2 117 67-203 19-142 (180)
64 3co5_A Putative two-component 98.3 3.8E-07 1.3E-11 72.0 3.1 46 62-107 4-51 (143)
65 4fcw_A Chaperone protein CLPB; 98.2 5.4E-06 1.9E-10 74.2 9.5 60 62-124 17-85 (311)
66 2ce7_A Cell division protein F 98.2 1.9E-05 6.6E-10 74.6 13.6 172 62-260 16-221 (476)
67 2bjv_A PSP operon transcriptio 98.2 5.6E-06 1.9E-10 72.4 9.1 46 62-107 6-53 (265)
68 1ojl_A Transcriptional regulat 98.1 1.7E-05 5.7E-10 70.9 11.2 46 62-107 2-49 (304)
69 2c9o_A RUVB-like 1; hexameric 98.1 1E-05 3.4E-10 76.7 10.0 47 61-107 36-87 (456)
70 3cf2_A TER ATPase, transitiona 98.1 1.6E-05 5.6E-10 79.4 11.8 171 63-260 205-407 (806)
71 2kjq_A DNAA-related protein; s 98.1 7.7E-07 2.6E-11 70.7 1.6 46 75-123 28-73 (149)
72 2w58_A DNAI, primosome compone 98.1 1.1E-05 3.8E-10 67.4 8.2 58 62-122 25-90 (202)
73 1iy2_A ATP-dependent metallopr 98.1 0.00034 1.2E-08 61.4 18.2 172 61-260 39-245 (278)
74 1ixz_A ATP-dependent metallopr 98.0 0.00016 5.5E-09 62.6 14.6 171 62-260 16-221 (254)
75 3t15_A Ribulose bisphosphate c 98.0 9.6E-05 3.3E-09 65.6 12.7 26 82-107 35-60 (293)
76 2dhr_A FTSH; AAA+ protein, hex 97.9 0.00033 1.1E-08 66.5 16.5 169 61-260 30-236 (499)
77 3pxi_A Negative regulator of g 97.9 1.4E-05 4.7E-10 80.7 6.0 147 62-234 491-675 (758)
78 3m6a_A ATP-dependent protease 97.8 0.00062 2.1E-08 65.7 15.5 45 63-107 82-132 (543)
79 1ypw_A Transitional endoplasmi 97.7 0.00011 3.6E-09 74.5 10.5 171 62-260 204-407 (806)
80 1jr3_D DNA polymerase III, del 97.7 0.00018 6.3E-09 65.3 11.0 166 74-267 9-185 (343)
81 2cvh_A DNA repair and recombin 97.7 0.00017 5.7E-09 60.8 9.8 88 82-177 19-117 (220)
82 2x8a_A Nuclear valosin-contain 97.6 0.0021 7.3E-08 56.2 15.8 150 62-235 10-192 (274)
83 1qvr_A CLPB protein; coiled co 97.6 0.00012 4.1E-09 74.8 8.4 45 63-107 559-612 (854)
84 2b8t_A Thymidine kinase; deoxy 97.6 2.6E-05 8.8E-10 66.0 2.8 113 82-204 11-126 (223)
85 3hr8_A Protein RECA; alpha and 97.6 0.00025 8.7E-09 64.3 9.3 88 82-177 60-151 (356)
86 1g5t_A COB(I)alamin adenosyltr 97.5 6.5E-05 2.2E-09 61.8 4.3 118 83-204 28-163 (196)
87 2zr9_A Protein RECA, recombina 97.5 0.00041 1.4E-08 63.0 9.6 88 82-177 60-151 (349)
88 2vhj_A Ntpase P4, P4; non- hyd 97.5 9.7E-05 3.3E-09 65.6 5.1 70 83-177 123-194 (331)
89 3io5_A Recombination and repai 97.5 0.00042 1.4E-08 61.3 9.0 88 84-177 29-123 (333)
90 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00015 5E-09 73.3 6.9 46 62-107 458-512 (758)
91 1xp8_A RECA protein, recombina 97.4 0.00052 1.8E-08 62.6 9.7 88 82-177 73-164 (366)
92 1n0w_A DNA repair protein RAD5 97.4 0.00048 1.6E-08 58.9 9.0 95 82-177 23-131 (243)
93 1v5w_A DMC1, meiotic recombina 97.4 0.00099 3.4E-08 60.4 10.9 94 82-176 121-230 (343)
94 2z43_A DNA repair and recombin 97.4 0.0006 2E-08 61.3 9.4 94 82-176 106-214 (324)
95 1u94_A RECA protein, recombina 97.4 0.0005 1.7E-08 62.5 8.3 87 82-176 62-152 (356)
96 2qgz_A Helicase loader, putati 97.3 0.0002 7E-09 63.9 5.1 41 67-107 133-176 (308)
97 2i1q_A DNA repair and recombin 97.3 0.0009 3.1E-08 60.1 8.9 93 82-175 97-214 (322)
98 3cf2_A TER ATPase, transitiona 97.2 0.002 6.7E-08 64.6 11.8 170 62-259 477-682 (806)
99 2r44_A Uncharacterized protein 97.2 0.00028 9.6E-09 63.6 4.8 44 62-107 27-70 (331)
100 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0012 4.1E-08 55.9 8.2 117 82-204 22-168 (235)
101 1rz3_A Hypothetical protein rb 97.1 0.00051 1.8E-08 57.1 5.4 42 66-107 2-46 (201)
102 3dm5_A SRP54, signal recogniti 97.1 0.003 1E-07 58.8 10.5 26 83-108 100-125 (443)
103 3bh0_A DNAB-like replicative h 97.1 0.0025 8.7E-08 56.9 9.7 51 82-137 67-117 (315)
104 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.00061 2.1E-08 64.8 5.4 44 62-107 22-65 (500)
105 1qhx_A CPT, protein (chloramph 96.9 0.00047 1.6E-08 55.9 3.5 24 84-107 4-27 (178)
106 1g8p_A Magnesium-chelatase 38 96.9 0.0004 1.4E-08 63.0 3.1 46 62-107 24-69 (350)
107 2orw_A Thymidine kinase; TMTK, 96.9 4.8E-05 1.6E-09 62.5 -2.9 24 84-107 4-27 (184)
108 4a74_A DNA repair and recombin 96.9 0.0052 1.8E-07 51.8 9.8 44 82-125 24-70 (231)
109 1ex7_A Guanylate kinase; subst 96.9 0.00042 1.4E-08 56.8 2.5 24 84-107 2-25 (186)
110 3ice_A Transcription terminati 96.9 0.00048 1.6E-08 62.5 3.0 51 74-125 164-215 (422)
111 3kb2_A SPBC2 prophage-derived 96.8 0.00063 2.2E-08 54.7 3.3 24 84-107 2-25 (173)
112 3c8u_A Fructokinase; YP_612366 96.8 0.00098 3.3E-08 55.7 4.5 39 69-107 6-46 (208)
113 3hws_A ATP-dependent CLP prote 96.8 0.0012 4.1E-08 60.3 5.5 45 63-107 16-75 (363)
114 3kl4_A SRP54, signal recogniti 96.8 0.0054 1.8E-07 57.1 9.4 25 83-107 97-121 (433)
115 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0076 2.6E-07 56.3 10.4 100 75-176 142-256 (473)
116 3sr0_A Adenylate kinase; phosp 96.8 0.0047 1.6E-07 51.4 8.3 77 85-176 2-85 (206)
117 3lda_A DNA repair protein RAD5 96.8 0.0064 2.2E-07 56.0 9.9 93 82-175 177-283 (400)
118 1vma_A Cell division protein F 96.8 0.0046 1.6E-07 54.9 8.5 91 82-175 103-196 (306)
119 1pzn_A RAD51, DNA repair and r 96.7 0.0049 1.7E-07 55.9 8.8 95 82-177 130-243 (349)
120 4a1f_A DNAB helicase, replicat 96.7 0.0037 1.3E-07 56.2 7.9 49 82-135 45-93 (338)
121 1um8_A ATP-dependent CLP prote 96.7 0.0015 5.2E-08 59.9 5.5 46 62-107 21-96 (376)
122 3lw7_A Adenylate kinase relate 96.7 0.00089 3E-08 53.9 3.3 23 84-107 2-24 (179)
123 2px0_A Flagellar biosynthesis 96.7 0.0065 2.2E-07 53.7 9.1 87 82-174 104-191 (296)
124 1ly1_A Polynucleotide kinase; 96.7 0.001 3.6E-08 53.9 3.7 22 84-105 3-24 (181)
125 3cmu_A Protein RECA, recombina 96.7 0.0045 1.6E-07 67.5 9.2 86 82-175 1426-1515(2050)
126 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 54.3 3.4 25 83-107 5-29 (185)
127 3vaa_A Shikimate kinase, SK; s 96.7 0.0011 3.6E-08 55.1 3.5 26 82-107 24-49 (199)
128 2hf9_A Probable hydrogenase ni 96.7 0.0021 7.2E-08 54.2 5.4 40 68-107 23-62 (226)
129 1kgd_A CASK, peripheral plasma 96.6 0.0012 4.1E-08 53.8 3.7 25 83-107 5-29 (180)
130 3uie_A Adenylyl-sulfate kinase 96.6 0.0017 5.7E-08 53.9 4.6 27 81-107 23-49 (200)
131 2ck3_D ATP synthase subunit be 96.6 0.02 6.7E-07 53.5 12.1 63 74-138 143-207 (482)
132 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.4E-08 54.0 3.8 25 83-107 5-29 (193)
133 1zp6_A Hypothetical protein AT 96.6 0.0013 4.5E-08 53.9 3.8 26 82-107 8-33 (191)
134 1nks_A Adenylate kinase; therm 96.6 0.0012 4E-08 54.2 3.5 24 84-107 2-25 (194)
135 1gvn_B Zeta; postsegregational 96.6 0.0022 7.4E-08 56.5 5.2 26 82-107 32-57 (287)
136 1kag_A SKI, shikimate kinase I 96.6 0.0011 3.7E-08 53.5 2.9 24 84-107 5-28 (173)
137 1j8m_F SRP54, signal recogniti 96.6 0.0064 2.2E-07 53.7 8.1 90 83-175 98-190 (297)
138 3tau_A Guanylate kinase, GMP k 96.6 0.0015 5E-08 54.6 3.8 26 82-107 7-32 (208)
139 2q6t_A DNAB replication FORK h 96.5 0.0066 2.2E-07 57.0 8.5 52 82-137 199-250 (444)
140 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 53.8 3.4 24 84-107 4-27 (192)
141 3tqc_A Pantothenate kinase; bi 96.5 0.017 5.9E-07 51.5 10.8 59 65-124 70-132 (321)
142 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.7E-08 55.1 2.7 25 83-107 18-42 (202)
143 2yvu_A Probable adenylyl-sulfa 96.5 0.0015 5.1E-08 53.4 3.5 26 82-107 12-37 (186)
144 2plr_A DTMP kinase, probable t 96.5 0.0041 1.4E-07 51.8 6.3 25 83-107 4-28 (213)
145 3e70_C DPA, signal recognition 96.5 0.011 3.9E-07 52.9 9.5 56 82-140 128-184 (328)
146 1tue_A Replication protein E1; 96.5 0.0024 8.2E-08 52.7 4.6 40 68-107 42-82 (212)
147 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.4E-08 54.8 3.1 26 82-107 11-36 (204)
148 2r6a_A DNAB helicase, replicat 96.5 0.0084 2.9E-07 56.5 9.0 50 82-135 202-251 (454)
149 3iij_A Coilin-interacting nucl 96.5 0.0013 4.5E-08 53.5 3.0 25 83-107 11-35 (180)
150 4eun_A Thermoresistant glucoki 96.5 0.0016 5.4E-08 54.0 3.5 27 81-107 27-53 (200)
151 3tlx_A Adenylate kinase 2; str 96.5 0.0031 1E-07 54.1 5.4 40 68-107 12-53 (243)
152 2ffh_A Protein (FFH); SRP54, s 96.5 0.0093 3.2E-07 55.3 9.0 38 83-123 98-135 (425)
153 1cr0_A DNA primase/helicase; R 96.5 0.015 5E-07 51.3 10.0 40 82-123 34-73 (296)
154 2wsm_A Hydrogenase expression/ 96.5 0.0026 8.8E-08 53.4 4.9 41 67-107 14-54 (221)
155 1q57_A DNA primase/helicase; d 96.5 0.015 5.2E-07 55.4 10.8 51 82-136 241-291 (503)
156 3jvv_A Twitching mobility prot 96.5 0.002 6.7E-08 58.6 4.3 113 81-207 121-234 (356)
157 2ze6_A Isopentenyl transferase 96.5 0.0016 5.5E-08 56.3 3.5 24 84-107 2-25 (253)
158 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6.2E-08 53.1 3.6 25 83-107 3-27 (196)
159 2c95_A Adenylate kinase 1; tra 96.4 0.0018 6.3E-08 53.2 3.5 26 82-107 8-33 (196)
160 1g41_A Heat shock protein HSLU 96.4 0.0025 8.6E-08 59.4 4.6 46 62-107 15-74 (444)
161 1knq_A Gluconate kinase; ALFA/ 96.4 0.0022 7.4E-08 51.8 3.7 25 83-107 8-32 (175)
162 1ukz_A Uridylate kinase; trans 96.4 0.0023 8E-08 53.0 4.0 26 82-107 14-39 (203)
163 1odf_A YGR205W, hypothetical 3 96.4 0.0038 1.3E-07 55.0 5.5 27 81-107 29-55 (290)
164 3cm0_A Adenylate kinase; ATP-b 96.4 0.0021 7.3E-08 52.4 3.6 25 83-107 4-28 (186)
165 1via_A Shikimate kinase; struc 96.4 0.0016 5.3E-08 52.7 2.7 24 84-107 5-28 (175)
166 1ls1_A Signal recognition part 96.4 0.01 3.6E-07 52.3 8.3 89 83-174 98-189 (295)
167 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0041 1.4E-07 56.0 5.6 43 65-107 2-48 (359)
168 3tr0_A Guanylate kinase, GMP k 96.4 0.0022 7.7E-08 53.1 3.8 25 83-107 7-31 (205)
169 3ney_A 55 kDa erythrocyte memb 96.4 0.0023 7.8E-08 52.9 3.6 26 82-107 18-43 (197)
170 3a00_A Guanylate kinase, GMP k 96.4 0.0017 6E-08 53.1 3.0 24 84-107 2-25 (186)
171 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.8E-08 53.1 3.3 25 83-107 12-36 (199)
172 1y63_A LMAJ004144AAA protein; 96.3 0.0023 7.8E-08 52.3 3.6 25 82-106 9-33 (184)
173 3umf_A Adenylate kinase; rossm 96.3 0.0023 8E-08 53.7 3.7 27 81-107 27-53 (217)
174 2xxa_A Signal recognition part 96.3 0.019 6.5E-07 53.5 10.1 41 82-124 99-139 (433)
175 2jaq_A Deoxyguanosine kinase; 96.3 0.0021 7E-08 53.2 3.3 23 85-107 2-24 (205)
176 2iyv_A Shikimate kinase, SK; t 96.3 0.0016 5.6E-08 53.1 2.6 24 84-107 3-26 (184)
177 2j41_A Guanylate kinase; GMP, 96.3 0.0025 8.6E-08 52.9 3.8 26 82-107 5-30 (207)
178 2vli_A Antibiotic resistance p 96.3 0.0015 5.2E-08 53.1 2.3 25 83-107 5-29 (183)
179 2p5t_B PEZT; postsegregational 96.3 0.0032 1.1E-07 54.3 4.5 26 82-107 31-56 (253)
180 1fx0_B ATP synthase beta chain 96.3 0.015 5.3E-07 54.5 9.2 100 75-176 156-277 (498)
181 1e6c_A Shikimate kinase; phosp 96.3 0.0019 6.5E-08 52.0 2.7 24 84-107 3-26 (173)
182 1qf9_A UMP/CMP kinase, protein 96.3 0.0026 8.9E-08 52.0 3.6 25 83-107 6-30 (194)
183 1zuh_A Shikimate kinase; alpha 96.3 0.0024 8.4E-08 51.1 3.3 25 83-107 7-31 (168)
184 2wwf_A Thymidilate kinase, put 96.3 0.0026 8.7E-08 53.1 3.5 25 83-107 10-34 (212)
185 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0029 1E-07 54.8 3.8 25 83-107 4-28 (260)
186 2cdn_A Adenylate kinase; phosp 96.2 0.0027 9.1E-08 52.6 3.5 26 82-107 19-44 (201)
187 2bdt_A BH3686; alpha-beta prot 96.2 0.0029 9.9E-08 51.8 3.6 23 84-106 3-25 (189)
188 3k1j_A LON protease, ATP-depen 96.2 0.0084 2.9E-07 58.6 7.4 44 62-107 41-84 (604)
189 3bgw_A DNAB-like replicative h 96.2 0.011 3.7E-07 55.5 7.8 40 82-124 196-235 (444)
190 1nn5_A Similar to deoxythymidy 96.2 0.0028 9.7E-08 52.9 3.5 26 82-107 8-33 (215)
191 2z0h_A DTMP kinase, thymidylat 96.2 0.0061 2.1E-07 50.0 5.5 23 85-107 2-24 (197)
192 1uf9_A TT1252 protein; P-loop, 96.2 0.0035 1.2E-07 51.8 4.0 26 81-106 6-31 (203)
193 3asz_A Uridine kinase; cytidin 96.2 0.0032 1.1E-07 52.5 3.8 26 82-107 5-30 (211)
194 1zd8_A GTP:AMP phosphotransfer 96.2 0.0029 9.8E-08 53.6 3.5 25 83-107 7-31 (227)
195 1zu4_A FTSY; GTPase, signal re 96.2 0.0092 3.1E-07 53.3 6.9 40 82-124 104-143 (320)
196 1ye8_A Protein THEP1, hypothet 96.2 0.0029 1E-07 51.4 3.4 23 85-107 2-24 (178)
197 2pt5_A Shikimate kinase, SK; a 96.2 0.0029 1E-07 50.6 3.3 23 85-107 2-24 (168)
198 2pbr_A DTMP kinase, thymidylat 96.2 0.0029 9.9E-08 51.9 3.3 23 85-107 2-24 (195)
199 1uj2_A Uridine-cytidine kinase 96.2 0.0034 1.2E-07 54.1 3.9 27 81-107 20-46 (252)
200 1cke_A CK, MSSA, protein (cyti 96.2 0.0029 9.8E-08 53.4 3.4 24 84-107 6-29 (227)
201 2v54_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 52.0 3.7 25 83-107 4-28 (204)
202 2qt1_A Nicotinamide riboside k 96.2 0.0036 1.2E-07 52.1 3.9 26 82-107 20-45 (207)
203 1lvg_A Guanylate kinase, GMP k 96.2 0.0024 8.2E-08 52.9 2.8 25 83-107 4-28 (198)
204 2j37_W Signal recognition part 96.1 0.04 1.4E-06 52.3 11.3 25 83-107 101-125 (504)
205 1aky_A Adenylate kinase; ATP:A 96.1 0.0033 1.1E-07 52.9 3.5 25 83-107 4-28 (220)
206 3fb4_A Adenylate kinase; psych 96.1 0.0031 1.1E-07 52.8 3.3 23 85-107 2-24 (216)
207 2bbw_A Adenylate kinase 4, AK4 96.1 0.0033 1.1E-07 53.9 3.5 26 82-107 26-51 (246)
208 3dl0_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 52.6 3.5 23 85-107 2-24 (216)
209 4gp7_A Metallophosphoesterase; 96.1 0.0032 1.1E-07 50.7 3.2 22 82-103 8-29 (171)
210 1zak_A Adenylate kinase; ATP:A 96.1 0.0031 1E-07 53.2 3.1 26 82-107 4-29 (222)
211 2if2_A Dephospho-COA kinase; a 96.1 0.0035 1.2E-07 52.0 3.3 22 84-105 2-23 (204)
212 3iqw_A Tail-anchored protein t 96.1 0.0096 3.3E-07 53.5 6.4 51 78-131 11-61 (334)
213 3cmu_A Protein RECA, recombina 96.0 0.017 5.8E-07 63.2 9.2 88 82-177 382-473 (2050)
214 1jjv_A Dephospho-COA kinase; P 96.0 0.004 1.4E-07 51.7 3.5 22 84-105 3-24 (206)
215 1sq5_A Pantothenate kinase; P- 96.0 0.027 9.4E-07 50.0 9.1 43 81-124 78-120 (308)
216 1xjc_A MOBB protein homolog; s 96.0 0.0045 1.5E-07 49.7 3.4 26 82-107 3-28 (169)
217 1gtv_A TMK, thymidylate kinase 96.0 0.0022 7.4E-08 53.6 1.6 23 85-107 2-24 (214)
218 3cmw_A Protein RECA, recombina 95.9 0.015 5.2E-07 62.7 8.3 88 82-177 382-473 (1706)
219 3io3_A DEHA2D07832P; chaperone 95.9 0.009 3.1E-07 54.0 5.7 52 78-130 13-64 (348)
220 3cmw_A Protein RECA, recombina 95.9 0.013 4.4E-07 63.3 7.6 86 82-175 1430-1519(1706)
221 1s96_A Guanylate kinase, GMP k 95.9 0.0048 1.7E-07 51.9 3.6 26 82-107 15-40 (219)
222 4e22_A Cytidylate kinase; P-lo 95.9 0.005 1.7E-07 53.1 3.8 26 82-107 26-51 (252)
223 3l0o_A Transcription terminati 95.9 0.0032 1.1E-07 57.1 2.5 53 72-125 163-216 (427)
224 1znw_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 51.4 3.5 26 82-107 19-44 (207)
225 2jeo_A Uridine-cytidine kinase 95.9 0.0056 1.9E-07 52.5 4.0 27 81-107 23-49 (245)
226 1m7g_A Adenylylsulfate kinase; 95.9 0.0086 3E-07 49.9 5.0 27 81-107 23-49 (211)
227 1z6g_A Guanylate kinase; struc 95.9 0.0042 1.4E-07 52.3 3.0 26 82-107 22-47 (218)
228 2pez_A Bifunctional 3'-phospho 95.9 0.0056 1.9E-07 49.6 3.7 25 83-107 5-29 (179)
229 3end_A Light-independent proto 95.9 0.0076 2.6E-07 53.5 4.9 42 81-125 39-80 (307)
230 3exa_A TRNA delta(2)-isopenten 95.9 0.0057 2E-07 54.1 3.9 25 83-107 3-27 (322)
231 2grj_A Dephospho-COA kinase; T 95.9 0.0052 1.8E-07 50.6 3.5 26 82-107 11-36 (192)
232 2j9r_A Thymidine kinase; TK1, 95.9 0.0071 2.4E-07 50.3 4.3 111 82-205 27-139 (214)
233 2dr3_A UPF0273 protein PH0284; 95.8 0.0065 2.2E-07 51.8 4.1 40 82-124 22-61 (247)
234 3p32_A Probable GTPase RV1496/ 95.8 0.017 5.8E-07 52.5 7.1 37 71-107 65-103 (355)
235 3fwy_A Light-independent proto 95.8 0.0085 2.9E-07 53.4 4.9 41 81-124 46-86 (314)
236 3a8t_A Adenylate isopentenyltr 95.8 0.006 2E-07 54.6 3.8 26 82-107 39-64 (339)
237 3be4_A Adenylate kinase; malar 95.8 0.0047 1.6E-07 51.8 3.1 25 83-107 5-29 (217)
238 4eaq_A DTMP kinase, thymidylat 95.8 0.013 4.3E-07 49.7 5.7 26 82-107 25-50 (229)
239 2yhs_A FTSY, cell division pro 95.8 0.037 1.3E-06 52.1 9.3 26 82-107 292-317 (503)
240 1htw_A HI0065; nucleotide-bind 95.8 0.0071 2.4E-07 48.0 3.9 27 81-107 31-57 (158)
241 3llm_A ATP-dependent RNA helic 95.8 0.043 1.5E-06 46.5 9.1 102 72-177 67-188 (235)
242 1g8f_A Sulfate adenylyltransfe 95.8 0.01 3.5E-07 56.4 5.4 46 62-107 372-419 (511)
243 3d3q_A TRNA delta(2)-isopenten 95.8 0.006 2.1E-07 54.7 3.7 24 84-107 8-31 (340)
244 3crm_A TRNA delta(2)-isopenten 95.7 0.0061 2.1E-07 54.3 3.7 25 83-107 5-29 (323)
245 3aez_A Pantothenate kinase; tr 95.7 0.0067 2.3E-07 54.0 4.0 42 81-123 88-129 (312)
246 1ak2_A Adenylate kinase isoenz 95.7 0.0066 2.2E-07 51.6 3.7 26 82-107 15-40 (233)
247 1xx6_A Thymidine kinase; NESG, 95.7 0.0029 1E-07 52.0 1.4 110 82-204 7-118 (191)
248 2xb4_A Adenylate kinase; ATP-b 95.7 0.006 2E-07 51.5 3.3 23 85-107 2-24 (223)
249 1vht_A Dephospho-COA kinase; s 95.7 0.0077 2.6E-07 50.5 4.0 23 83-105 4-26 (218)
250 1e4v_A Adenylate kinase; trans 95.7 0.0061 2.1E-07 51.0 3.3 23 85-107 2-24 (214)
251 3r20_A Cytidylate kinase; stru 95.7 0.0064 2.2E-07 51.6 3.4 25 83-107 9-33 (233)
252 2qmh_A HPR kinase/phosphorylas 95.7 0.0064 2.2E-07 49.9 3.2 26 82-107 33-58 (205)
253 3foz_A TRNA delta(2)-isopenten 95.7 0.0072 2.4E-07 53.3 3.7 26 82-107 9-34 (316)
254 3upu_A ATP-dependent DNA helic 95.6 0.012 4E-07 55.6 5.5 40 68-108 31-70 (459)
255 3f9v_A Minichromosome maintena 95.6 0.0038 1.3E-07 60.9 2.1 47 61-107 294-351 (595)
256 1rj9_A FTSY, signal recognitio 95.6 0.009 3.1E-07 53.0 4.4 26 82-107 101-126 (304)
257 4gzl_A RAS-related C3 botulinu 95.6 0.0074 2.5E-07 50.0 3.6 41 67-107 14-54 (204)
258 2ehv_A Hypothetical protein PH 95.6 0.0067 2.3E-07 51.8 3.5 24 82-105 29-52 (251)
259 1np6_A Molybdopterin-guanine d 95.6 0.0073 2.5E-07 48.8 3.4 25 83-107 6-30 (174)
260 3ake_A Cytidylate kinase; CMP 95.6 0.007 2.4E-07 50.2 3.3 23 85-107 4-26 (208)
261 3lnc_A Guanylate kinase, GMP k 95.6 0.0048 1.6E-07 52.3 2.3 26 82-107 26-52 (231)
262 2f6r_A COA synthase, bifunctio 95.6 0.0083 2.8E-07 52.6 3.8 23 82-104 74-96 (281)
263 1w36_D RECD, exodeoxyribonucle 95.5 0.016 5.5E-07 56.7 6.1 25 83-107 164-188 (608)
264 2r8r_A Sensor protein; KDPD, P 95.5 0.014 4.7E-07 49.0 4.9 38 84-124 7-44 (228)
265 4edh_A DTMP kinase, thymidylat 95.5 0.024 8.3E-07 47.3 6.5 26 83-108 6-31 (213)
266 3e1s_A Exodeoxyribonuclease V, 95.5 0.019 6.4E-07 55.7 6.5 25 83-107 204-228 (574)
267 3b85_A Phosphate starvation-in 95.5 0.011 3.9E-07 49.2 4.3 23 84-106 23-45 (208)
268 3nwj_A ATSK2; P loop, shikimat 95.5 0.0069 2.4E-07 52.0 2.9 25 83-107 48-72 (250)
269 3lv8_A DTMP kinase, thymidylat 95.4 0.022 7.5E-07 48.4 5.9 37 83-121 27-63 (236)
270 1ltq_A Polynucleotide kinase; 95.4 0.009 3.1E-07 52.8 3.7 24 84-107 3-26 (301)
271 3zvl_A Bifunctional polynucleo 95.4 0.0085 2.9E-07 55.7 3.5 27 81-107 256-282 (416)
272 4tmk_A Protein (thymidylate ki 95.4 0.025 8.4E-07 47.3 6.1 26 83-108 3-28 (213)
273 1yrb_A ATP(GTP)binding protein 95.4 0.022 7.6E-07 49.0 6.0 26 82-107 13-38 (262)
274 3hjn_A DTMP kinase, thymidylat 95.4 0.023 7.9E-07 46.8 5.8 49 85-136 2-50 (197)
275 2f1r_A Molybdopterin-guanine d 95.4 0.0059 2E-07 49.2 2.1 24 84-107 3-26 (171)
276 1p9r_A General secretion pathw 95.3 0.032 1.1E-06 51.7 7.1 28 80-107 164-191 (418)
277 1a7j_A Phosphoribulokinase; tr 95.3 0.0043 1.5E-07 54.7 1.2 26 82-107 4-29 (290)
278 2i3b_A HCR-ntpase, human cance 95.3 0.0087 3E-07 49.1 2.9 23 85-107 3-25 (189)
279 3mfy_A V-type ATP synthase alp 95.3 0.066 2.2E-06 50.8 9.0 57 74-135 217-275 (588)
280 3tif_A Uncharacterized ABC tra 95.3 0.01 3.4E-07 50.6 3.3 26 82-107 30-55 (235)
281 2ocp_A DGK, deoxyguanosine kin 95.2 0.013 4.4E-07 50.0 3.9 25 83-107 2-26 (241)
282 3kjh_A CO dehydrogenase/acetyl 95.2 0.023 7.8E-07 48.4 5.5 41 86-129 3-43 (254)
283 1u0j_A DNA replication protein 95.2 0.022 7.5E-07 49.1 5.2 36 72-107 91-128 (267)
284 3ld9_A DTMP kinase, thymidylat 95.2 0.023 7.7E-07 47.8 5.2 27 81-107 19-45 (223)
285 3cr8_A Sulfate adenylyltranfer 95.2 0.017 5.8E-07 55.5 4.9 44 64-107 348-393 (552)
286 2orv_A Thymidine kinase; TP4A 95.2 0.022 7.4E-07 47.9 5.0 108 82-204 18-126 (234)
287 3vr4_D V-type sodium ATPase su 95.2 0.023 7.7E-07 52.8 5.5 101 75-175 142-258 (465)
288 3b9q_A Chloroplast SRP recepto 95.2 0.014 4.6E-07 51.8 3.9 25 83-107 100-124 (302)
289 2pcj_A ABC transporter, lipopr 95.2 0.011 3.7E-07 49.9 3.1 26 82-107 29-54 (224)
290 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.2E-07 50.2 3.4 26 81-107 23-48 (240)
291 2v3c_C SRP54, signal recogniti 95.2 0.0059 2E-07 56.9 1.6 25 83-107 99-123 (432)
292 3eph_A TRNA isopentenyltransfe 95.1 0.013 4.4E-07 53.7 3.7 25 83-107 2-26 (409)
293 2eyu_A Twitching motility prot 95.1 0.015 5E-07 50.4 3.9 27 81-107 23-49 (261)
294 2cbz_A Multidrug resistance-as 95.1 0.012 4.2E-07 50.1 3.3 26 82-107 30-55 (237)
295 1nlf_A Regulatory protein REPA 95.1 0.012 4.2E-07 51.4 3.4 26 82-107 29-54 (279)
296 4akg_A Glutathione S-transfera 95.1 0.059 2E-06 60.9 9.4 79 83-175 1267-1346(2695)
297 1cp2_A CP2, nitrogenase iron p 95.1 0.021 7.2E-07 49.4 4.9 39 84-125 2-40 (269)
298 2dyk_A GTP-binding protein; GT 95.1 0.015 5.2E-07 45.6 3.6 24 84-107 2-25 (161)
299 3tqf_A HPR(Ser) kinase; transf 95.1 0.016 5.6E-07 46.3 3.6 24 83-106 16-39 (181)
300 2woj_A ATPase GET3; tail-ancho 95.1 0.033 1.1E-06 50.5 6.2 49 81-130 16-64 (354)
301 1oix_A RAS-related protein RAB 95.1 0.014 4.6E-07 47.8 3.4 25 83-107 29-53 (191)
302 2ged_A SR-beta, signal recogni 95.0 0.018 6.3E-07 46.8 4.1 26 82-107 47-72 (193)
303 2wji_A Ferrous iron transport 95.0 0.015 5.2E-07 46.2 3.4 23 84-106 4-26 (165)
304 2woo_A ATPase GET3; tail-ancho 95.0 0.032 1.1E-06 50.1 5.8 42 81-125 17-58 (329)
305 1b0u_A Histidine permease; ABC 95.0 0.013 4.6E-07 50.7 3.3 26 82-107 31-56 (262)
306 1zj6_A ADP-ribosylation factor 95.0 0.028 9.6E-07 45.5 5.1 34 72-106 6-39 (187)
307 2gks_A Bifunctional SAT/APS ki 95.0 0.029 1E-06 53.9 5.9 46 62-107 349-396 (546)
308 3oaa_A ATP synthase subunit al 95.0 0.2 6.7E-06 47.0 11.1 96 75-176 153-265 (513)
309 2v9p_A Replication protein E1; 95.0 0.016 5.3E-07 51.3 3.6 27 81-107 124-150 (305)
310 2zej_A Dardarin, leucine-rich 95.0 0.011 3.8E-07 47.9 2.6 22 85-106 4-25 (184)
311 1mv5_A LMRA, multidrug resista 95.0 0.015 5.3E-07 49.7 3.5 27 81-107 26-52 (243)
312 4g1u_C Hemin import ATP-bindin 94.9 0.021 7.2E-07 49.5 4.4 26 82-107 36-61 (266)
313 4b3f_X DNA-binding protein smu 94.9 0.031 1.1E-06 55.1 6.1 62 69-136 193-254 (646)
314 2r9v_A ATP synthase subunit al 94.9 0.042 1.4E-06 51.6 6.6 97 74-175 165-277 (515)
315 3gfo_A Cobalt import ATP-bindi 94.9 0.013 4.4E-07 51.1 3.0 26 82-107 33-58 (275)
316 2f9l_A RAB11B, member RAS onco 94.9 0.014 4.9E-07 47.9 3.2 24 84-107 6-29 (199)
317 1svm_A Large T antigen; AAA+ f 94.9 0.016 5.6E-07 52.9 3.7 27 81-107 167-193 (377)
318 2olj_A Amino acid ABC transpor 94.9 0.015 5.1E-07 50.4 3.3 27 81-107 48-74 (263)
319 1q3t_A Cytidylate kinase; nucl 94.9 0.018 6E-07 49.0 3.7 26 82-107 15-40 (236)
320 2d2e_A SUFC protein; ABC-ATPas 94.9 0.016 5.3E-07 49.9 3.3 25 82-106 28-52 (250)
321 1p5z_B DCK, deoxycytidine kina 94.9 0.011 3.7E-07 51.2 2.3 26 82-107 23-48 (263)
322 1ji0_A ABC transporter; ATP bi 94.9 0.014 4.8E-07 49.8 3.0 26 82-107 31-56 (240)
323 2zu0_C Probable ATP-dependent 94.8 0.017 6E-07 50.1 3.6 25 82-106 45-69 (267)
324 1g6h_A High-affinity branched- 94.8 0.014 4.9E-07 50.4 3.0 26 82-107 32-57 (257)
325 2pze_A Cystic fibrosis transme 94.8 0.015 5.3E-07 49.2 3.1 26 82-107 33-58 (229)
326 3gqb_B V-type ATP synthase bet 94.8 0.024 8.3E-07 52.6 4.6 101 75-175 138-261 (464)
327 2ff7_A Alpha-hemolysin translo 94.8 0.015 5.1E-07 49.9 3.0 26 82-107 34-59 (247)
328 2og2_A Putative signal recogni 94.8 0.019 6.4E-07 52.1 3.8 25 83-107 157-181 (359)
329 2afh_E Nitrogenase iron protei 94.8 0.024 8.3E-07 49.7 4.5 40 83-125 2-41 (289)
330 2ghi_A Transport protein; mult 94.8 0.017 5.7E-07 50.0 3.3 26 82-107 45-70 (260)
331 2ce2_X GTPase HRAS; signaling 94.8 0.017 5.7E-07 45.4 3.1 23 85-107 5-27 (166)
332 1m8p_A Sulfate adenylyltransfe 94.8 0.025 8.5E-07 54.7 4.8 26 82-107 395-420 (573)
333 1vpl_A ABC transporter, ATP-bi 94.8 0.017 5.7E-07 49.8 3.3 26 82-107 40-65 (256)
334 1sgw_A Putative ABC transporte 94.8 0.013 4.5E-07 49.0 2.6 26 82-107 34-59 (214)
335 2wjg_A FEOB, ferrous iron tran 94.8 0.02 6.9E-07 46.3 3.6 24 83-106 7-30 (188)
336 2qe7_A ATP synthase subunit al 94.8 0.086 3E-06 49.5 8.2 97 74-175 152-264 (502)
337 2ixe_A Antigen peptide transpo 94.7 0.017 5.9E-07 50.2 3.3 27 81-107 43-69 (271)
338 2fz4_A DNA repair protein RAD2 94.7 0.15 5.1E-06 43.2 9.1 40 65-107 93-132 (237)
339 1tq4_A IIGP1, interferon-induc 94.7 0.027 9.4E-07 52.0 4.7 26 82-107 68-93 (413)
340 1z2a_A RAS-related protein RAB 94.7 0.018 6.2E-07 45.5 3.1 25 83-107 5-29 (168)
341 2qi9_C Vitamin B12 import ATP- 94.7 0.021 7.1E-07 49.0 3.6 26 82-107 25-50 (249)
342 2yz2_A Putative ABC transporte 94.7 0.019 6.4E-07 49.9 3.3 26 82-107 32-57 (266)
343 2c61_A A-type ATP synthase non 94.6 0.047 1.6E-06 51.0 6.1 101 75-175 143-259 (469)
344 3v9p_A DTMP kinase, thymidylat 94.6 0.026 8.9E-07 47.7 4.0 26 82-107 24-49 (227)
345 2zts_A Putative uncharacterize 94.6 0.022 7.4E-07 48.5 3.6 49 82-134 29-77 (251)
346 2vp4_A Deoxynucleoside kinase; 94.6 0.018 6E-07 48.8 2.9 25 82-106 19-43 (230)
347 3zq6_A Putative arsenical pump 94.6 0.038 1.3E-06 49.4 5.3 46 83-131 14-59 (324)
348 2lkc_A Translation initiation 94.6 0.024 8.3E-07 45.3 3.7 26 82-107 7-32 (178)
349 3vr4_A V-type sodium ATPase ca 94.6 0.11 3.6E-06 49.6 8.4 57 74-135 222-280 (600)
350 2nq2_C Hypothetical ABC transp 94.6 0.018 6.2E-07 49.6 3.0 26 82-107 30-55 (253)
351 2nzj_A GTP-binding protein REM 94.6 0.018 6.3E-07 45.8 2.8 25 83-107 4-28 (175)
352 1fx0_A ATP synthase alpha chai 94.5 0.06 2E-06 50.6 6.5 87 82-175 162-265 (507)
353 2ihy_A ABC transporter, ATP-bi 94.5 0.019 6.4E-07 50.2 3.0 26 82-107 46-71 (279)
354 1fzq_A ADP-ribosylation factor 94.5 0.024 8.1E-07 45.8 3.5 25 82-106 15-39 (181)
355 2h17_A ADP-ribosylation factor 94.5 0.022 7.5E-07 45.9 3.2 24 83-106 21-44 (181)
356 1u8z_A RAS-related protein RAL 94.5 0.022 7.5E-07 44.8 3.1 24 84-107 5-28 (168)
357 1nrj_B SR-beta, signal recogni 94.5 0.026 8.9E-07 47.0 3.7 27 81-107 10-36 (218)
358 1kao_A RAP2A; GTP-binding prot 94.5 0.022 7.6E-07 44.8 3.1 24 84-107 4-27 (167)
359 1moz_A ARL1, ADP-ribosylation 94.4 0.023 7.8E-07 45.7 3.2 26 81-106 16-41 (183)
360 1z08_A RAS-related protein RAB 94.4 0.023 7.7E-07 45.0 3.1 25 83-107 6-30 (170)
361 1ek0_A Protein (GTP-binding pr 94.4 0.023 7.8E-07 44.9 3.1 23 85-107 5-27 (170)
362 2ck3_A ATP synthase subunit al 94.4 0.054 1.8E-06 51.0 6.0 103 74-176 152-273 (510)
363 2yv5_A YJEQ protein; hydrolase 94.4 0.035 1.2E-06 49.1 4.6 33 71-107 156-188 (302)
364 3con_A GTPase NRAS; structural 94.4 0.022 7.7E-07 46.1 3.1 24 84-107 22-45 (190)
365 3llu_A RAS-related GTP-binding 94.4 0.023 7.8E-07 46.5 3.2 26 82-107 19-44 (196)
366 3sop_A Neuronal-specific septi 94.4 0.023 8E-07 49.4 3.4 23 85-107 4-26 (270)
367 4hlc_A DTMP kinase, thymidylat 94.4 0.046 1.6E-06 45.4 5.0 24 84-107 3-26 (205)
368 1r8s_A ADP-ribosylation factor 94.4 0.024 8.3E-07 44.6 3.2 23 85-107 2-24 (164)
369 1z0j_A RAB-22, RAS-related pro 94.4 0.024 8E-07 44.9 3.1 24 84-107 7-30 (170)
370 1m7b_A RND3/RHOE small GTP-bin 94.4 0.023 7.9E-07 45.9 3.1 25 83-107 7-31 (184)
371 3fvq_A Fe(3+) IONS import ATP- 94.4 0.025 8.7E-07 51.1 3.6 26 82-107 29-54 (359)
372 2gj8_A MNME, tRNA modification 94.4 0.023 7.8E-07 45.5 3.0 24 84-107 5-28 (172)
373 2www_A Methylmalonic aciduria 94.4 0.052 1.8E-06 49.1 5.7 25 83-107 74-98 (349)
374 1ky3_A GTP-binding protein YPT 94.4 0.024 8.2E-07 45.4 3.1 26 82-107 7-32 (182)
375 2h57_A ADP-ribosylation factor 94.4 0.019 6.4E-07 46.7 2.5 25 83-107 21-45 (190)
376 3ihw_A Centg3; RAS, centaurin, 94.4 0.024 8.2E-07 46.0 3.1 25 83-107 20-44 (184)
377 1nij_A Hypothetical protein YJ 94.3 0.021 7.1E-07 51.0 2.9 26 82-107 3-28 (318)
378 3ug7_A Arsenical pump-driving 94.3 0.041 1.4E-06 49.8 4.9 40 82-124 25-64 (349)
379 3fdi_A Uncharacterized protein 94.3 0.028 9.6E-07 46.5 3.5 25 83-107 6-30 (201)
380 1svi_A GTP-binding protein YSX 94.3 0.027 9.2E-07 45.9 3.4 25 82-106 22-46 (195)
381 1c1y_A RAS-related protein RAP 94.3 0.025 8.5E-07 44.6 3.1 24 84-107 4-27 (167)
382 2h92_A Cytidylate kinase; ross 94.3 0.022 7.5E-07 47.6 2.9 24 84-107 4-27 (219)
383 1ihu_A Arsenical pump-driving 94.3 0.038 1.3E-06 53.9 5.0 41 81-124 6-46 (589)
384 4dzz_A Plasmid partitioning pr 94.3 0.036 1.2E-06 45.7 4.2 44 84-130 2-46 (206)
385 1g16_A RAS-related protein SEC 94.3 0.024 8.4E-07 44.8 3.1 24 84-107 4-27 (170)
386 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.025 8.4E-07 45.2 3.1 25 83-107 7-31 (177)
387 2erx_A GTP-binding protein DI- 94.3 0.024 8.2E-07 44.9 3.0 24 84-107 4-27 (172)
388 2axn_A 6-phosphofructo-2-kinas 94.3 0.028 9.4E-07 53.8 3.9 27 81-107 33-59 (520)
389 3tmk_A Thymidylate kinase; pho 94.3 0.075 2.6E-06 44.4 6.1 25 83-107 5-29 (216)
390 2hxs_A RAB-26, RAS-related pro 94.3 0.027 9.2E-07 45.0 3.3 25 83-107 6-30 (178)
391 4f4c_A Multidrug resistance pr 94.3 0.086 2.9E-06 56.3 7.9 27 81-107 442-468 (1321)
392 2pjz_A Hypothetical protein ST 94.2 0.023 8E-07 49.1 3.0 24 83-106 30-53 (263)
393 3q85_A GTP-binding protein REM 94.2 0.026 8.9E-07 44.6 3.1 22 85-106 4-25 (169)
394 1tf7_A KAIC; homohexamer, hexa 94.2 0.18 6.1E-06 48.3 9.4 87 82-174 280-380 (525)
395 1f6b_A SAR1; gtpases, N-termin 94.2 0.033 1.1E-06 45.7 3.7 25 82-106 24-48 (198)
396 3c5c_A RAS-like protein 12; GD 94.2 0.027 9.1E-07 45.8 3.1 26 82-107 20-45 (187)
397 3pqc_A Probable GTP-binding pr 94.2 0.03 1E-06 45.4 3.5 26 82-107 22-47 (195)
398 3q72_A GTP-binding protein RAD 94.2 0.025 8.6E-07 44.6 2.9 22 85-106 4-25 (166)
399 2bbs_A Cystic fibrosis transme 94.2 0.027 9.3E-07 49.5 3.3 26 82-107 63-88 (290)
400 1r2q_A RAS-related protein RAB 94.2 0.028 9.7E-07 44.3 3.1 24 84-107 7-30 (170)
401 2gk6_A Regulator of nonsense t 94.2 0.071 2.4E-06 52.3 6.6 51 83-136 195-245 (624)
402 3q3j_B RHO-related GTP-binding 94.1 0.033 1.1E-06 46.4 3.7 25 83-107 27-51 (214)
403 2cxx_A Probable GTP-binding pr 94.1 0.025 8.4E-07 45.8 2.8 23 85-107 3-25 (190)
404 1m2o_B GTP-binding protein SAR 94.1 0.028 9.6E-07 45.8 3.1 25 83-107 23-47 (190)
405 3nh6_A ATP-binding cassette SU 94.1 0.022 7.5E-07 50.4 2.6 27 81-107 78-104 (306)
406 2fn4_A P23, RAS-related protei 94.1 0.036 1.2E-06 44.3 3.7 26 82-107 8-33 (181)
407 1z0f_A RAB14, member RAS oncog 94.1 0.029 1E-06 44.7 3.1 25 83-107 15-39 (179)
408 3gmt_A Adenylate kinase; ssgci 94.1 0.028 9.7E-07 47.4 3.1 25 83-107 8-32 (230)
409 2iwr_A Centaurin gamma 1; ANK 94.1 0.023 7.7E-07 45.5 2.4 24 84-107 8-31 (178)
410 1upt_A ARL1, ADP-ribosylation 94.1 0.039 1.3E-06 43.6 3.9 25 83-107 7-31 (171)
411 2y8e_A RAB-protein 6, GH09086P 94.1 0.03 1E-06 44.7 3.1 24 84-107 15-38 (179)
412 1z47_A CYSA, putative ABC-tran 94.1 0.029 9.9E-07 50.7 3.3 26 82-107 40-65 (355)
413 3kta_A Chromosome segregation 94.1 0.033 1.1E-06 45.0 3.4 24 84-107 27-50 (182)
414 2yyz_A Sugar ABC transporter, 94.1 0.033 1.1E-06 50.5 3.6 26 82-107 28-53 (359)
415 2bme_A RAB4A, RAS-related prot 94.1 0.03 1E-06 45.1 3.1 25 83-107 10-34 (186)
416 3kkq_A RAS-related protein M-R 94.0 0.031 1E-06 45.0 3.1 25 83-107 18-42 (183)
417 2oze_A ORF delta'; para, walke 94.0 0.071 2.4E-06 46.8 5.8 54 70-127 22-78 (298)
418 1c9k_A COBU, adenosylcobinamid 94.0 0.025 8.4E-07 45.8 2.5 21 86-106 2-22 (180)
419 4dsu_A GTPase KRAS, isoform 2B 94.0 0.03 1E-06 45.1 3.1 24 84-107 5-28 (189)
420 2it1_A 362AA long hypothetical 94.0 0.033 1.1E-06 50.5 3.6 26 82-107 28-53 (362)
421 3rlf_A Maltose/maltodextrin im 94.0 0.033 1.1E-06 50.8 3.6 26 82-107 28-53 (381)
422 2cjw_A GTP-binding protein GEM 94.0 0.031 1.1E-06 45.6 3.2 24 83-106 6-29 (192)
423 3ea0_A ATPase, para family; al 94.0 0.056 1.9E-06 45.9 4.9 42 82-125 3-45 (245)
424 4dkx_A RAS-related protein RAB 94.0 0.031 1.1E-06 46.8 3.1 23 85-107 15-37 (216)
425 3bc1_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.2 3.1 25 83-107 11-35 (195)
426 2ewv_A Twitching motility prot 94.0 0.048 1.6E-06 49.8 4.6 111 81-205 134-245 (372)
427 3tui_C Methionine import ATP-b 93.9 0.035 1.2E-06 50.3 3.6 27 81-107 52-78 (366)
428 1v43_A Sugar-binding transport 93.9 0.035 1.2E-06 50.5 3.6 26 82-107 36-61 (372)
429 2oil_A CATX-8, RAS-related pro 93.9 0.033 1.1E-06 45.3 3.1 25 83-107 25-49 (193)
430 2efe_B Small GTP-binding prote 93.9 0.033 1.1E-06 44.6 3.1 24 84-107 13-36 (181)
431 1mh1_A RAC1; GTP-binding, GTPa 93.9 0.034 1.1E-06 44.7 3.1 24 84-107 6-29 (186)
432 3bwd_D RAC-like GTP-binding pr 93.9 0.034 1.2E-06 44.6 3.1 25 83-107 8-32 (182)
433 2a9k_A RAS-related protein RAL 93.9 0.034 1.2E-06 44.7 3.1 25 83-107 18-42 (187)
434 3t5g_A GTP-binding protein RHE 93.9 0.034 1.2E-06 44.6 3.1 25 83-107 6-30 (181)
435 1ypw_A Transitional endoplasmi 93.9 0.024 8.1E-07 57.4 2.6 46 62-107 477-535 (806)
436 1lw7_A Transcriptional regulat 93.9 0.035 1.2E-06 50.6 3.5 25 83-107 170-194 (365)
437 2qm8_A GTPase/ATPase; G protei 93.9 0.04 1.4E-06 49.5 3.9 27 81-107 53-79 (337)
438 1g29_1 MALK, maltose transport 93.9 0.033 1.1E-06 50.7 3.3 26 82-107 28-53 (372)
439 3d31_A Sulfate/molybdate ABC t 93.9 0.03 1E-06 50.5 2.9 26 82-107 25-50 (348)
440 1ksh_A ARF-like protein 2; sma 93.9 0.038 1.3E-06 44.6 3.4 27 81-107 16-42 (186)
441 3tw8_B RAS-related protein RAB 93.9 0.026 8.9E-07 45.1 2.4 26 82-107 8-33 (181)
442 2atv_A RERG, RAS-like estrogen 93.8 0.044 1.5E-06 44.7 3.8 26 82-107 27-52 (196)
443 2bov_A RAla, RAS-related prote 93.8 0.035 1.2E-06 45.6 3.1 26 82-107 13-38 (206)
444 2g6b_A RAS-related protein RAB 93.8 0.036 1.2E-06 44.3 3.1 25 83-107 10-34 (180)
445 3dz8_A RAS-related protein RAB 93.8 0.036 1.2E-06 45.0 3.2 25 83-107 23-47 (191)
446 3clv_A RAB5 protein, putative; 93.8 0.035 1.2E-06 45.3 3.1 25 83-107 7-31 (208)
447 1vg8_A RAS-related protein RAB 93.8 0.035 1.2E-06 45.6 3.1 26 82-107 7-32 (207)
448 1gwn_A RHO-related GTP-binding 93.8 0.036 1.2E-06 45.9 3.1 26 82-107 27-52 (205)
449 1u0l_A Probable GTPase ENGC; p 93.8 0.05 1.7E-06 48.1 4.3 34 71-107 160-193 (301)
450 3t1o_A Gliding protein MGLA; G 93.8 0.038 1.3E-06 44.9 3.3 25 83-107 14-38 (198)
451 2ew1_A RAS-related protein RAB 93.7 0.037 1.3E-06 45.7 3.1 25 83-107 26-50 (201)
452 2gf9_A RAS-related protein RAB 93.7 0.038 1.3E-06 44.8 3.1 25 83-107 22-46 (189)
453 2fg5_A RAB-22B, RAS-related pr 93.7 0.037 1.3E-06 45.0 3.1 25 83-107 23-47 (192)
454 1x6v_B Bifunctional 3'-phospho 93.7 0.041 1.4E-06 53.6 3.7 26 82-107 51-76 (630)
455 1zd9_A ADP-ribosylation factor 93.7 0.038 1.3E-06 44.8 3.1 25 83-107 22-46 (188)
456 2fh5_B SR-beta, signal recogni 93.7 0.038 1.3E-06 45.8 3.1 26 82-107 6-31 (214)
457 2b6h_A ADP-ribosylation factor 93.7 0.026 9E-07 46.1 2.1 26 81-106 27-52 (192)
458 3cbq_A GTP-binding protein REM 93.7 0.029 1E-06 46.0 2.4 24 82-105 22-45 (195)
459 3reg_A RHO-like small GTPase; 93.7 0.039 1.3E-06 44.9 3.1 25 83-107 23-47 (194)
460 2a5j_A RAS-related protein RAB 93.6 0.04 1.4E-06 44.8 3.1 24 84-107 22-45 (191)
461 1zbd_A Rabphilin-3A; G protein 93.6 0.037 1.3E-06 45.4 3.0 24 84-107 9-32 (203)
462 3oes_A GTPase rhebl1; small GT 93.6 0.039 1.3E-06 45.3 3.1 26 82-107 23-48 (201)
463 1bif_A 6-phosphofructo-2-kinas 93.6 0.043 1.5E-06 51.8 3.7 26 82-107 38-63 (469)
464 1pui_A ENGB, probable GTP-bind 93.6 0.023 7.9E-07 47.0 1.7 26 81-106 24-49 (210)
465 1oxx_K GLCV, glucose, ABC tran 93.6 0.028 9.7E-07 50.8 2.4 26 82-107 30-55 (353)
466 3tkl_A RAS-related protein RAB 93.6 0.041 1.4E-06 44.7 3.1 25 83-107 16-40 (196)
467 2qu8_A Putative nucleolar GTP- 93.6 0.047 1.6E-06 45.9 3.6 26 82-107 28-53 (228)
468 3fkq_A NTRC-like two-domain pr 93.6 0.051 1.7E-06 49.6 4.1 44 82-128 142-186 (373)
469 2gza_A Type IV secretion syste 93.6 0.06 2E-06 48.9 4.5 36 82-121 174-209 (361)
470 2rcn_A Probable GTPase ENGC; Y 93.6 0.067 2.3E-06 48.4 4.7 34 71-107 206-239 (358)
471 3gd7_A Fusion complex of cysti 93.6 0.045 1.5E-06 50.2 3.6 26 81-106 45-70 (390)
472 1z06_A RAS-related protein RAB 93.6 0.042 1.4E-06 44.5 3.1 26 82-107 19-44 (189)
473 2g3y_A GTP-binding protein GEM 93.5 0.04 1.4E-06 45.9 3.0 23 83-105 37-59 (211)
474 1x3s_A RAS-related protein RAB 93.5 0.043 1.5E-06 44.5 3.1 24 84-107 16-39 (195)
475 4f4c_A Multidrug resistance pr 93.5 0.091 3.1E-06 56.1 6.4 27 81-107 1103-1129(1321)
476 2p5s_A RAS and EF-hand domain 93.5 0.043 1.5E-06 45.0 3.1 26 82-107 27-52 (199)
477 2obl_A ESCN; ATPase, hydrolase 93.5 0.094 3.2E-06 47.3 5.6 27 81-107 69-95 (347)
478 4bas_A ADP-ribosylation factor 93.5 0.04 1.4E-06 44.9 2.9 26 82-107 16-41 (199)
479 2bcg_Y Protein YP2, GTP-bindin 93.5 0.043 1.5E-06 45.1 3.1 25 83-107 8-32 (206)
480 2o52_A RAS-related protein RAB 93.4 0.04 1.4E-06 45.2 2.9 26 82-107 24-49 (200)
481 3hdt_A Putative kinase; struct 93.4 0.056 1.9E-06 45.5 3.7 26 82-107 13-38 (223)
482 2gf0_A GTP-binding protein DI- 93.4 0.045 1.5E-06 44.6 3.1 26 82-107 7-32 (199)
483 2q3h_A RAS homolog gene family 93.4 0.042 1.4E-06 45.0 2.9 26 82-107 19-44 (201)
484 1ega_A Protein (GTP-binding pr 93.3 0.049 1.7E-06 48.2 3.4 25 82-106 7-31 (301)
485 2p67_A LAO/AO transport system 93.3 0.056 1.9E-06 48.7 3.8 27 81-107 54-80 (341)
486 3k53_A Ferrous iron transport 93.3 0.057 2E-06 46.8 3.7 25 83-107 3-27 (271)
487 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.06 2.1E-06 48.2 3.9 83 83-178 171-253 (330)
488 3lxx_A GTPase IMAP family memb 93.3 0.055 1.9E-06 45.9 3.5 27 81-107 27-53 (239)
489 3igf_A ALL4481 protein; two-do 93.3 0.046 1.6E-06 49.8 3.2 43 83-129 2-44 (374)
490 2atx_A Small GTP binding prote 93.2 0.049 1.7E-06 44.3 3.1 24 84-107 19-42 (194)
491 3def_A T7I23.11 protein; chlor 93.2 0.1 3.5E-06 45.0 5.3 36 72-107 23-60 (262)
492 2j0v_A RAC-like GTP-binding pr 93.2 0.05 1.7E-06 45.0 3.1 25 83-107 9-33 (212)
493 2j1l_A RHO-related GTP-binding 93.2 0.045 1.5E-06 45.5 2.9 24 83-106 34-57 (214)
494 2fv8_A H6, RHO-related GTP-bin 93.2 0.051 1.7E-06 44.9 3.1 25 83-107 25-49 (207)
495 2qnr_A Septin-2, protein NEDD5 93.2 0.041 1.4E-06 48.6 2.6 23 84-106 19-41 (301)
496 3cph_A RAS-related protein SEC 93.2 0.052 1.8E-06 44.8 3.1 25 83-107 20-44 (213)
497 3k9g_A PF-32 protein; ssgcid, 93.2 0.11 3.8E-06 44.7 5.4 46 81-130 25-71 (267)
498 2il1_A RAB12; G-protein, GDP, 93.2 0.04 1.4E-06 44.9 2.4 25 83-107 26-50 (192)
499 3cwq_A Para family chromosome 93.1 0.12 4.1E-06 42.9 5.4 42 85-130 2-44 (209)
500 2aka_B Dynamin-1; fusion prote 93.1 0.1 3.5E-06 45.7 5.2 26 82-107 25-50 (299)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.5e-43 Score=341.21 Aligned_cols=284 Identities=14% Similarity=0.125 Sum_probs=222.0
Q ss_pred ccchhHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHh--hccCCCCCCCeEEEEEeCCcC--CHHHHHHHHHH
Q 043737 65 VGLQSTFDRVWRCLMEE---QMGIVGLYGMGEVGKTTLLTQINK--KFLHTPNDFDFVIWVVASKDL--QLEQIQGSIAK 137 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~l~~ 137 (371)
|||+.++++|.++|..+ ..++|+|+|+||+||||||+++++ +. ....+|++++|++++... +...++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999753 579999999999999999999997 23 347899999999998875 78999999999
Q ss_pred HhccCCC-----CCCcCCHHHHHHHHHHHhCCC-ceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHhhcc
Q 043737 138 KINLFNE-----SWNSRSLQEKSQDIVKNMSNK-KFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCGQME 211 (371)
Q Consensus 138 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~~~~ 211 (371)
+++.... .....+.......+.+.+.++ ++||||||+|+..++ .+. ...||+||||||+..++..+.
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~------~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA------QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH------HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc------ccCCCEEEEEcCCHHHHHHcC
Confidence 9976421 112335567788999999996 999999999987654 111 226999999999999887654
Q ss_pred -CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhccc
Q 043737 212 -AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSA 290 (371)
Q Consensus 212 -~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~~ 290 (371)
....|++++|+.++|++||.+.++... .++..++++++|+++|+|+||||.++|+.++.+ + |... +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 335799999999999999999976543 235677889999999999999999999999763 2 5443 4444443
Q ss_pred ccCCCChhHHHHHHhhccCCCCCcchhHHhc-----------hhccCCCCCccCHHHHHHHHHHc--CCcccCC-----C
Q 043737 291 YKFSGMESRVFSRLKISYDFLPGDETRFYLL-----------YCSSYPEDYKIFVEDLIDCWICE--GFLDEYD-----G 352 (371)
Q Consensus 291 ~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~-----------~la~fp~~~~i~~~~li~~w~a~--g~~~~~~-----~ 352 (371)
.... ...+..++..||+.||+ ..+.||+ +||+||+++.|+ +.+|+|+ ||+...+ .
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 12577778888888877 7888888 999999999999 8899999 9997654 1
Q ss_pred hHHHHHHHHHhCcCCccc
Q 043737 353 FEHEIKDTLLFVSFFMHV 370 (371)
Q Consensus 353 ~~~~~l~~L~~~sll~~~ 370 (371)
.+.++|++|+++||||++
T Consensus 429 ~~~~~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 429 EVADRLKRLSKRGALLSG 446 (549)
T ss_dssp HHHHHHHHTTTBSSCSEE
T ss_pred HHHHHHHHHHHcCCeeEe
Confidence 244599999999999863
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.7e-38 Score=313.64 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=213.2
Q ss_pred CCccccchhHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCe-EEEEEeCCcCCHHHHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDF-VIWVVASKDLQLEQIQGSIAKK 138 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~l~~~ 138 (371)
.+..|||+.++++|.++|.+ +..++|+|+||||+||||||++++++. +...+|+. ++|++++...+...++..++..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34569999999999999976 557899999999999999999999764 33567774 9999999988888888888776
Q ss_pred hccCCCCC---C------cCCHHHHHHHHHHHh---CCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHH
Q 043737 139 INLFNESW---N------SRSLQEKSQDIVKNM---SNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 139 l~~~~~~~---~------~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
++...+.. . ..+.+.....+...+ .++++||||||+|+...|+.+. .|++||||||++.+
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHH
Confidence 54321110 0 112334455666655 6899999999999977776541 58999999999988
Q ss_pred HhhccCCCceeec------CCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC-ChhHH
Q 043737 207 CGQMEAHKSFKVE------RLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKK-TPREW 279 (371)
Q Consensus 207 ~~~~~~~~~~~l~------~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~-~~~~~ 279 (371)
+..+.....+.++ +|+.+||++||.+.+... .. ++..+ .|+|+||||.++|+.|+.+. +...|
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----HH---HHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 7543333456676 999999999999986432 11 22333 39999999999999999753 56677
Q ss_pred HHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcch-hHHhchhccCCCCCccCHHHHHHHHHHcCCcccCCChHHHHH
Q 043737 280 EHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDET-RFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYDGFEHEIK 358 (371)
Q Consensus 280 ~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~l 358 (371)
... ....+..+|..||+.|++ +. |.||+++|+||+++.|+.+.++.+|+++| ...++.+|
T Consensus 348 ~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----eedAe~~L 408 (1221)
T 1vt4_I 348 KHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----KSDVMVVV 408 (1221)
T ss_dssp HHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----SHHHHHHH
T ss_pred hcC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----HHHHHHHH
Confidence 542 135899999999999999 78 99999999999999999999999999887 12388999
Q ss_pred HHHHhCcCCcc
Q 043737 359 DTLLFVSFFMH 369 (371)
Q Consensus 359 ~~L~~~sll~~ 369 (371)
++|+++|||+.
T Consensus 409 ~eLvdRSLLq~ 419 (1221)
T 1vt4_I 409 NKLHKYSLVEK 419 (1221)
T ss_dssp HHHHTSSSSSB
T ss_pred HHHHhhCCEEE
Confidence 99999999985
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-37 Score=326.26 Aligned_cols=291 Identities=21% Similarity=0.271 Sum_probs=232.4
Q ss_pred CCCCCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCCC-CCCCeEEEEEeCCcCC--HHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHTP-NDFDFVIWVVASKDLQ--LEQIQ 132 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~--~~~~~ 132 (371)
|+.++.||||++++++|.++|.. +..++|+|+|+||+||||||++++++..... .+++.++|++++.... ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 44567799999999999999963 5678999999999999999999998852223 3556899999987533 34456
Q ss_pred HHHHHHhccCCC--CCCcCCHHHHHHHHHHHhCCC--ceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 133 GSIAKKINLFNE--SWNSRSLQEKSQDIVKNMSNK--KFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 133 ~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
..++..+..... .....+.+.....++..+.++ ++||||||+|+..++..+ .++++||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHH
Confidence 667777654321 123557788888999999877 999999999988766533 56899999999998874
Q ss_pred h-ccCCCceeecC-CChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHH
Q 043737 209 Q-MEAHKSFKVER-LGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVL 286 (371)
Q Consensus 209 ~-~~~~~~~~l~~-L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l 286 (371)
. ......+.+.+ |+.++|++||...++... +..++.+++|+++|+|+||||.++|++|+.+. ..|...++.+
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 3 35567789986 999999999998885432 23345699999999999999999999998643 4699988888
Q ss_pred hcccccC-----CCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCCChHHHHHHHH
Q 043737 287 RSSAYKF-----SGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYDGFEHEIKDTL 361 (371)
Q Consensus 287 ~~~~~~~-----~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~l~~L 361 (371)
....... ......+..+|..||+.|++ +.|.||++||+||+++.|+.+.++.+|.+++ ..++++|++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------~~~~~~l~~L 418 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------EEVEDILQEF 418 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------HHHHHHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------HHHHHHHHHH
Confidence 7664322 12224799999999999999 8999999999999999999999999996542 3489999999
Q ss_pred HhCcCCcc
Q 043737 362 LFVSFFMH 369 (371)
Q Consensus 362 ~~~sll~~ 369 (371)
+++||++.
T Consensus 419 ~~~sl~~~ 426 (1249)
T 3sfz_A 419 VNKSLLFC 426 (1249)
T ss_dssp HHTTSCEE
T ss_pred HhccceEE
Confidence 99999974
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=288.12 Aligned_cols=287 Identities=21% Similarity=0.296 Sum_probs=219.5
Q ss_pred CCCCCccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhccCC-CCCC-CeEEEEEeCCcCCHHHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKFLHT-PNDF-DFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 133 (371)
|+.++.||||+.++++|.++|.. +..++|+|+|+||+||||||.+++++. .. ..+| +.++|++++.. +...++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHH
Confidence 44567899999999999999974 467899999999999999999999875 22 3456 58999998765 3333333
Q ss_pred HH---HHHhccC--CCCCCcCCHHHHHHHHHHHhCC--CceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHH
Q 043737 134 SI---AKKINLF--NESWNSRSLQEKSQDIVKNMSN--KKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 134 ~l---~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
.+ +..++.. .......+.+.....+...+.+ +++||||||+|+...+.. ...+++||||||+..+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~--------l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA--------FDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT--------TCSSCEEEEEESCGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH--------hcCCCeEEEECCCcHH
Confidence 33 4444421 1122345667777788877765 789999999998665542 2468999999999887
Q ss_pred HhhccCCCceee---cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHH
Q 043737 207 CGQMEAHKSFKV---ERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASKKTPREWEHAI 283 (371)
Q Consensus 207 ~~~~~~~~~~~l---~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l 283 (371)
..... ...+.+ ++|+.+++.+||...++... ....+.+.+|++.|+|+|+||.++|+.++.. ...|...+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l 342 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYL 342 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHH
Confidence 65433 345555 48999999999999886532 1112358999999999999999999999864 34688888
Q ss_pred HHHhccccc-----CCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHHHHHHHcCCcccCCChHHHHH
Q 043737 284 EVLRSSAYK-----FSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLIDCWICEGFLDEYDGFEHEIK 358 (371)
Q Consensus 284 ~~l~~~~~~-----~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~l 358 (371)
+.+...... .......+..++..||+.|++ ..+.||.++|+||+++.|+.+.+..+|.++ ...+..++
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------~~~~~~~l 415 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME------TEEVEDIL 415 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------HHHHHHHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC------HHHHHHHH
Confidence 888765322 112235799999999999999 899999999999999999999999999643 12388999
Q ss_pred HHHHhCcCCc
Q 043737 359 DTLLFVSFFM 368 (371)
Q Consensus 359 ~~L~~~sll~ 368 (371)
++|+++||++
T Consensus 416 ~~L~~~~Ll~ 425 (591)
T 1z6t_A 416 QEFVNKSLLF 425 (591)
T ss_dssp HHHHHTTSSE
T ss_pred HHHHhCcCeE
Confidence 9999999996
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.83 E-value=2e-19 Score=165.53 Aligned_cols=278 Identities=13% Similarity=0.055 Sum_probs=172.3
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC------CHHHH
Q 043737 58 RPLPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL------QLEQI 131 (371)
Q Consensus 58 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 131 (371)
...++.|+||++++++|.+++..+ +++.|+|++|+|||+|+++++++. . ++|+++.... +...+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHH
Confidence 334577999999999999998654 799999999999999999999875 1 6788765432 55666
Q ss_pred HHHHHHHhccC----------------CCCCCcCCHHHHHHHHHHHhCC-CceEEEEeCCCCccc---------cccccc
Q 043737 132 QGSIAKKINLF----------------NESWNSRSLQEKSQDIVKNMSN-KKFVLLLDHIWELVD---------LSQVGL 185 (371)
Q Consensus 132 ~~~l~~~l~~~----------------~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~~~~ 185 (371)
+..+...+... ..........+....+.+.... ++++|||||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 66666654320 0000123455566666555542 489999999986543 111221
Q ss_pred ccCCCCCCCcEEEEecCchHHHhh----------c--cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Q 043737 186 PVPCRTSASNKTVFTARELEVCGQ----------M--EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVA 253 (371)
Q Consensus 186 ~l~~~~~~~~~iliTsR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~ 253 (371)
... ...+..+++|++....... . .....+.+.+|+.+|+.+++...+...... ...+.+..++
T Consensus 158 ~~~--~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~ 232 (350)
T 2qen_A 158 AYD--SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAV 232 (350)
T ss_dssp HHH--HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHH
T ss_pred HHH--hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHH
Confidence 111 1247888999887543111 0 112368999999999999998866432211 1245688999
Q ss_pred HHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCC---CCcchhHHhchhccCCCCC
Q 043737 254 KECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFL---PGDETRFYLLYCSSYPEDY 330 (371)
Q Consensus 254 ~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~~~~l~~la~fp~~~ 330 (371)
+.++|+|+++..++..+....+...+.. .+.. .+...+...+..+ ++ ..+.++..+|+ .
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g--- 294 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL-G--- 294 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---
Confidence 9999999999999876532122222211 1111 1111111111222 55 78889998988 3
Q ss_pred ccCHHHHHHHHHHcCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 331 KIFVEDLIDCWICEGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 331 ~i~~~~li~~w~a~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
..+...+.....+. .-.-.......+++.|.+++|+..
T Consensus 295 ~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~ 332 (350)
T 2qen_A 295 YNRWSLIRDYLAVK-GTKIPEPRLYALLENLKKMNWIVE 332 (350)
T ss_dssp CCSHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhCCCEEe
Confidence 24556665544221 101111227889999999999864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.80 E-value=3e-18 Score=158.01 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=165.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-----CCHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-----LQLEQIQGS 134 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 134 (371)
.++.||||+++++.|.+ +.. +++.|+|++|+|||+|++++++.. .. ..+|+++... .+...++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 45779999999999999 754 699999999999999999999887 22 2578887643 344555555
Q ss_pred HHHHhcc------------------CCCCC---------CcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-----cc-
Q 043737 135 IAKKINL------------------FNESW---------NSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-----LS- 181 (371)
Q Consensus 135 l~~~l~~------------------~~~~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~- 181 (371)
+...+.. ..+.. ...........+.+... ++++|||||++.... +.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 5443310 00000 12234445555544322 489999999976432 11
Q ss_pred ccccccCCCCCCCcEEEEecCchHHHhh----------cc-C-CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHH
Q 043737 182 QVGLPVPCRTSASNKTVFTARELEVCGQ----------ME-A-HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELA 249 (371)
Q Consensus 182 ~~~~~l~~~~~~~~~iliTsR~~~~~~~----------~~-~-~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~ 249 (371)
.+..... ...+..+|+|++....... .. . ...+.+.+|+.+++.+++...+....... .. .
T Consensus 160 ~l~~~~~--~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~ 232 (357)
T 2fna_A 160 ALAYAYD--NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----Y 232 (357)
T ss_dssp HHHHHHH--HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----H
T ss_pred HHHHHHH--cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----H
Confidence 1211111 1246789999987643211 11 1 24689999999999999988653211111 12 3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCC
Q 043737 250 ETVAKECGGLPLALITVGRAMASKKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPED 329 (371)
Q Consensus 250 ~~i~~~~~g~Plal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~ 329 (371)
..|++.++|+|+++..++..+....+...|.. .+-..... .....+...+... ..+++ ..+.++..+|+ ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~~~~~~-~~l~~-~~~~~l~~la~-g~- 303 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKK--LILKEFENFLHGR-EIARK-RYLNIMRTLSK-CG- 303 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHH--HHHHHHHHHHTTC-GGGHH-HHHHHHHHHTT-CB-
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHH--HHHHHHHHHhhcc-ccccH-HHHHHHHHHHc-CC-
Confidence 88999999999999999887653233333322 11110000 0001122111111 15777 78899999998 32
Q ss_pred CccCHHHHHHHHH-HcCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 330 YKIFVEDLIDCWI-CEGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 330 ~~i~~~~li~~w~-a~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
+...|....- ..|. .-.......+++.|.+++|+..
T Consensus 304 ---~~~~l~~~~~~~~g~-~~~~~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 304 ---KWSDVKRALELEEGI-EISDSEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp ---CHHHHHHHHHHHHCS-CCCHHHHHHHHHHHHHTTSEEE
T ss_pred ---CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCEEe
Confidence 4555543221 1231 0111227889999999999854
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.80 E-value=1.8e-18 Score=162.82 Aligned_cols=295 Identities=13% Similarity=0.039 Sum_probs=181.6
Q ss_pred CCCccccchhHHHHHHHHH-hc------CCceEEEE--EcCCCCcHHHHHHHHHhhccCC--CCCC-CeEEEEEeCCcCC
Q 043737 60 LPPTVVGLQSTFDRVWRCL-ME------EQMGIVGL--YGMGEVGKTTLLTQINKKFLHT--PNDF-DFVIWVVASKDLQ 127 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L-~~------~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~ 127 (371)
.+..|+||+.++++|.+++ .. ...+.+.| +|++|+|||+|++.+++..... ...+ ..++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4578999999999999988 42 24567888 9999999999999999886210 0012 2467888767778
Q ss_pred HHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc--------ccccccccCCCC--C--C
Q 043737 128 LEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD--------LSQVGLPVPCRT--S--A 193 (371)
Q Consensus 128 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~--~--~ 193 (371)
...++..++..++...+. ...+.......+...+. +++++|||||++.... +..+...+.... . .
T Consensus 100 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 889999999998764321 23345556666666664 6789999999976422 221211111011 2 4
Q ss_pred CcEEEEecCchHHHhhc--------c-CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC------C
Q 043737 194 SNKTVFTARELEVCGQM--------E-AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECG------G 258 (371)
Q Consensus 194 ~~~iliTsR~~~~~~~~--------~-~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 258 (371)
+..+|+||+...+...+ . ....+.+++|+.+++.++|...+.... .......+.+..+++.++ |
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCC
Confidence 55677788754432111 1 122389999999999999976643111 111223566889999999 9
Q ss_pred CcHHHHHHHHHHc-----CCC---ChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCC--C
Q 043737 259 LPLALITVGRAMA-----SKK---TPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYP--E 328 (371)
Q Consensus 259 ~Plal~~~a~~l~-----~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp--~ 328 (371)
+|..+..++.... ... +...+......... ...+..++..|++ ..+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 9976655543321 111 22233322221100 2345567788988 7888888888653 3
Q ss_pred CCccCHHHHHHHHH--H---cCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 329 DYKIFVEDLIDCWI--C---EGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 329 ~~~i~~~~li~~w~--a---~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
+..++...+...+. + .|.-.-.......++++|.+.+|+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEe
Confidence 34566666655442 1 13211111227789999999999854
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.71 E-value=6.1e-16 Score=144.11 Aligned_cols=291 Identities=14% Similarity=0.080 Sum_probs=180.8
Q ss_pred CCCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~ 132 (371)
.|+.|+||+.+++++..++.. ...+.+.|+|++|+|||+||+.+++...... .....++|+++....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 347899999999999998853 4567899999999999999999998762110 112357788888888889999
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCcccc----cccccccCCC---C-CCCcEEEEecC
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVDL----SQVGLPVPCR---T-SASNKTVFTAR 202 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~----~~~~~~l~~~---~-~~~~~iliTsR 202 (371)
..++..++...+. ...+..+....+...+. +++.+||||+++....- +.+...+.+. . ..+..+|+||+
T Consensus 97 ~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 97 SAIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999998764332 34456666677777664 46889999999864321 2221111101 1 44667777776
Q ss_pred chHH--------HhhccCCCceeecCCChHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcC---CCcHHHHHHHHH
Q 043737 203 ELEV--------CGQMEAHKSFKVERLGYEDAWKLFEEKVGK--EILDSHPDIPELAETVAKECG---GLPLALITVGRA 269 (371)
Q Consensus 203 ~~~~--------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~a~~ 269 (371)
.... ...+ ....+.+++++.++..+++...+.. .....+++ .++.+++.++ |.|..+..+...
T Consensus 176 ~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6422 1111 1147899999999999999987532 11122333 3777888888 999433332222
Q ss_pred -H---c--CC--CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhc-cCCCCCccCHHHHHHH
Q 043737 270 -M---A--SK--KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCS-SYPEDYKIFVEDLIDC 340 (371)
Q Consensus 270 -l---~--~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la-~fp~~~~i~~~~li~~ 340 (371)
. . +. -+.+.+...+.... ...+..++..|++ ..+.++..++ ++.....+....+.+.
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~ 317 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYER 317 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 1 1 11 24455555554432 1235556778888 6666666555 4443345666644444
Q ss_pred HHH----cCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 341 WIC----EGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 341 w~a----~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
... .|...........+++.|...|++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 318 YKELTSTLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 322 34212122238889999999998753
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=5.4e-16 Score=144.50 Aligned_cols=288 Identities=15% Similarity=0.011 Sum_probs=179.1
Q ss_pred CCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCC----CCC-CCeEEEEEeCCcC-CHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHT----PND-FDFVIWVVASKDL-QLEQ 130 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~ 130 (371)
|..|+||+.+++++.+++.. ...+.+.|+|++|+|||+||+.+++..... ... ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 37899999999999887754 346789999999999999999999876211 011 3467888877666 7888
Q ss_pred HHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc---ccc-cccccCCCCCCCcEEEEecCchHH
Q 043737 131 IQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD---LSQ-VGLPVPCRTSASNKTVFTARELEV 206 (371)
Q Consensus 131 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~-~~~~l~~~~~~~~~iliTsR~~~~ 206 (371)
++..++..+..................+...+..++.+|||||++.... .+. +...+. .. .+..+|+||+....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~-~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR-SD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT-SS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc-CC-cceEEEEEECCCch
Confidence 8888888873322222344456677778888877666999999976432 222 222222 22 67788888886532
Q ss_pred H----hhc--cCCCceeecCCChHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcC---CCcH-HHHHHHHH--HcC
Q 043737 207 C----GQM--EAHKSFKVERLGYEDAWKLFEEKVGK--EILDSHPDIPELAETVAKECG---GLPL-ALITVGRA--MAS 272 (371)
Q Consensus 207 ~----~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~a~~--l~~ 272 (371)
. ... .....+.+++++.++..+++...+.. .....+ .+.++.+++.++ |.|. ++..+-.. +..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 100 11238999999999999999987631 111122 344778888888 9887 43333222 221
Q ss_pred ---CCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCC-CccCHHHHHHHHHHcCCcc
Q 043737 273 ---KKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPED-YKIFVEDLIDCWICEGFLD 348 (371)
Q Consensus 273 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~-~~i~~~~li~~w~a~g~~~ 348 (371)
.-+.+.+...++.... ..+..++..|++ ..+.++..++. ... ..+. +.....--..|...
T Consensus 254 ~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~~~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQKP 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTCCC
T ss_pred CCCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcCCCC
Confidence 1245666665554321 335566777887 67777776766 211 1111 11122211234222
Q ss_pred cCCChHHHHHHHHHhCcCCcc
Q 043737 349 EYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 349 ~~~~~~~~~l~~L~~~sll~~ 369 (371)
.......++++.|.++||+..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEE
Confidence 222238889999999998753
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=1.4e-15 Score=141.83 Aligned_cols=290 Identities=13% Similarity=0.076 Sum_probs=181.7
Q ss_pred CCccccchhHHHHHHHHHhc----CCce--EEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcCCHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME----EQMG--IVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDLQLEQIQG 133 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~----~~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 133 (371)
|+.++||+.+++++..++.. .... .+.|+|++|+|||||++.+++.. ... -..++++++....+...++.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHH
Confidence 47899999999999998865 2334 89999999999999999999887 222 23677888877778889999
Q ss_pred HHHHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCcc--cccccccccCCCCC---CCcEEEEecCchHH
Q 043737 134 SIAKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELV--DLSQVGLPVPCRTS---ASNKTVFTARELEV 206 (371)
Q Consensus 134 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~---~~~~iliTsR~~~~ 206 (371)
.++..++...+. ...........+...+. +++.+||||+++... .+..+...+..... .+..+|++|+...+
T Consensus 93 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 999888654322 33345566666655553 568899999997652 22223222220111 46677777766533
Q ss_pred Hhhcc-------CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc---------CCCcHHHHHHHHHH
Q 043737 207 CGQME-------AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKEC---------GGLPLALITVGRAM 270 (371)
Q Consensus 207 ~~~~~-------~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~a~~l 270 (371)
..... ....+.+++++.++..+++...+.... ....-..+.++.+++.+ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 22111 123689999999999999988764211 01122346688899999 79876555444322
Q ss_pred c------CC--CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCC---CCCccCHHHHHH
Q 043737 271 A------SK--KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYP---EDYKIFVEDLID 339 (371)
Q Consensus 271 ~------~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp---~~~~i~~~~li~ 339 (371)
. .. -+.+........... ..+...+..|++ ..+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 1 11 122333333322211 112223455776 6777777777654 222566677766
Q ss_pred HHHH----cCCcccCCChHHHHHHHHHhCcCCcc
Q 043737 340 CWIC----EGFLDEYDGFEHEIKDTLLFVSFFMH 369 (371)
Q Consensus 340 ~w~a----~g~~~~~~~~~~~~l~~L~~~sll~~ 369 (371)
.+-. .|...-......+++++|.+++|+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 317 SYKIVCEEYGERPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 5543 24322222338899999999999864
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=5.6e-16 Score=144.24 Aligned_cols=293 Identities=12% Similarity=0.102 Sum_probs=174.9
Q ss_pred CCCccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 60 LPPTVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 60 ~~~~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
.+..|+||+.+++.+.+++.. ...+.+.|+|++|+|||||++.+++...........++|+++....+...++..+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999998863 4467899999999999999999998762111102357788877666777888888
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc------ccccccccCCCCCCCcEEEEecCchHHH
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD------LSQVGLPVPCRTSASNKTVFTARELEVC 207 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~iliTsR~~~~~ 207 (371)
+..++...+. ...+..+....+...+. +++.+||||+++.... +..+...+......+..+|+||+.....
T Consensus 98 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8877654322 33345565666666554 4589999999975421 2222111210123456677777755321
Q ss_pred hhc-----c--CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC---CCcHHHHHHHHHHc------
Q 043737 208 GQM-----E--AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECG---GLPLALITVGRAMA------ 271 (371)
Q Consensus 208 ~~~-----~--~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~a~~l~------ 271 (371)
..+ . ....+.+++++.++..+++...+.... .......+..+.+++.++ |.|..+..+.....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 111 1 124789999999999999988653111 111223455777888887 99984443332221
Q ss_pred C--CCChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCC--CCCccCHHHHHHHHH----H
Q 043737 272 S--KKTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYP--EDYKIFVEDLIDCWI----C 343 (371)
Q Consensus 272 ~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp--~~~~i~~~~li~~w~----a 343 (371)
. .-+.+.+..++.... ...+..++..+++ ..+.++..++.+. ....+....+.+... .
T Consensus 256 ~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 124445554444322 2345556677877 6677766666321 112344544433221 1
Q ss_pred cCCcccCCChHHHHHHHHHhCcCCc
Q 043737 344 EGFLDEYDGFEHEIKDTLLFVSFFM 368 (371)
Q Consensus 344 ~g~~~~~~~~~~~~l~~L~~~sll~ 368 (371)
.|.-.-.......+++.|.+.|++.
T Consensus 322 ~g~~~~~~~~~~~~l~~L~~~gli~ 346 (386)
T 2qby_A 322 LGVEAVTQRRVSDIINELDMVGILT 346 (386)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHTSEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 2421111123788999999999875
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.53 E-value=1.2e-13 Score=119.78 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=116.6
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++||+.+++.|..++..+. .+.+.|+|++|+|||+||+.+++.... ...+.. .... .... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~---~~~~---~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---TPCG---VCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS---SCCS---CSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCc---ccHH-HHHHhccCC
Confidence 569999999999999997643 458999999999999999999988731 111100 0000 0000 000100000
Q ss_pred cC--CCCCCcCCHHHHHHHHHHHh-----CCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCchHH-Hh-h
Q 043737 141 LF--NESWNSRSLQEKSQDIVKNM-----SNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTARELEV-CG-Q 209 (371)
Q Consensus 141 ~~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~~~-~~-~ 209 (371)
.. ...............+...+ .+++.+|||||++.. ..++.+...+. ....+..+|+||+.... .. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHHH
Confidence 00 00000001111222222222 246789999999764 23344433333 33456778887765432 11 1
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHc
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMA 271 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~ 271 (371)
......+.+++++.++..+++...+....... ..+.++.|++.++|+|..+..+...+.
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12346789999999999999998774332111 245688999999999999888776543
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.50 E-value=1.5e-13 Score=117.52 Aligned_cols=186 Identities=16% Similarity=0.080 Sum_probs=116.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
..++||+..++.+.+++.....+.+.|+|++|+|||+||+.+++... ........+.++.+...+...+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 56899999999999999776555699999999999999999998752 11111123444444433333332222221111
Q ss_pred CCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCchHH-Hh-hccCCCcee
Q 043737 142 FNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARELEV-CG-QMEAHKSFK 217 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~~~-~~-~~~~~~~~~ 217 (371)
.. ...+++.+|||||++... ..+.+...+. ....++.+|+||+.... .. .......+.
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 00 012567899999998652 2333333333 33456778888776431 11 112334789
Q ss_pred ecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Q 043737 218 VERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRA 269 (371)
Q Consensus 218 l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 269 (371)
+.+++.++..+++...+...... -..+..+.+++.++|+|..+..+...
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999998876432211 12456788999999999965554443
No 14
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.42 E-value=2.1e-12 Score=117.30 Aligned_cols=268 Identities=12% Similarity=0.030 Sum_probs=143.6
Q ss_pred CCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
-..|+|++..+..+..++.. ...+.+.|+|++|+|||+||+.+++.. ... .++++.+......++..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH--
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH--
Confidence 36799999999998888753 244688999999999999999999887 222 33444433322222211
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccC---------C-C-------CCCCcE
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVP---------C-R-------TSASNK 196 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~---------~-~-------~~~~~~ 196 (371)
.+ ... ..++.+|+||+++.... ...+...+. . . ...+..
T Consensus 83 --~l-------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 --IL-------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp --HH-------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred --HH-------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11 100 13456999999986531 111110000 0 0 012345
Q ss_pred EEEecCchH-HHhhc-cC-CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHcCC
Q 043737 197 TVFTARELE-VCGQM-EA-HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAMASK 273 (371)
Q Consensus 197 iliTsR~~~-~~~~~-~~-~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l~~~ 273 (371)
++.||.... +...+ .. ...+.+.+++.++..+++...+...... -..+..+.+++.++|+|..+..+...+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 665554332 21111 11 2578999999999999998887543322 224568899999999999888776655321
Q ss_pred --------CChhHHHHHHHHHhcccccCCCChhHHHHHHhhccCCCCCcchhHHhchhccCCCCCccCHHHHH----HHH
Q 043737 274 --------KTPREWEHAIEVLRSSAYKFSGMESRVFSRLKISYDFLPGDETRFYLLYCSSYPEDYKIFVEDLI----DCW 341 (371)
Q Consensus 274 --------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~l~~la~fp~~~~i~~~~li----~~w 341 (371)
-+.+.....+..+......+...+..+...+...+..-+. ....+-..+.+ +...+. .+-
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~~~~ 289 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHEPYL 289 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHhHHH
Confidence 1334444444433221111111122233333333322222 23333333332 222222 234
Q ss_pred HHcCCcccCC-C-----hHHHHHH-HHHhCcCCcc
Q 043737 342 ICEGFLDEYD-G-----FEHEIKD-TLLFVSFFMH 369 (371)
Q Consensus 342 ~a~g~~~~~~-~-----~~~~~l~-~L~~~sll~~ 369 (371)
+..|++.... + .+.++++ ++++|||+|+
T Consensus 290 i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 290 IRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5678886432 1 2899998 9999999996
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=4e-12 Score=115.21 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=114.2
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL 141 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~ 141 (371)
..++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++.... ......+++++.+...+...+ ..++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 568999999999999998766555999999999999999999988621 111112344443332232222 222222210
Q ss_pred CCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCchH-HH-hhccCCCce
Q 043737 142 FNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARELE-VC-GQMEAHKSF 216 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~~-~~-~~~~~~~~~ 216 (371)
... .+ .+++.++|+||++... ..+.+...+. ....++.+|+||.... +. ...+....+
T Consensus 99 ~~~----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 99 KKL----------------HLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp BCC----------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccc----------------cCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 01 3457899999998642 2333333333 3345667777776532 11 112334579
Q ss_pred eecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHH-HHHHHH
Q 043737 217 KVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLA-LITVGR 268 (371)
Q Consensus 217 ~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~a~ 268 (371)
.+.+++.++..+++...+....... ..+.+..+++.++|.|.. +..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999988764322111 245578999999999954 454433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1.4e-11 Score=111.83 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=114.2
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC-CeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF-DFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-..++|++..++.+..++..+..+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+...+...+ ......+
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 100 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-REKVKEF 100 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-HHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-HHHHHHH
Confidence 356899999999999999877666799999999999999999998862 1111 12333433321111111 1111111
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCchHH-Hhh-ccCCCc
Q 043737 140 NLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARELEV-CGQ-MEAHKS 215 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~~~-~~~-~~~~~~ 215 (371)
....+ ...+++.++|+||++... ..+.+...+. ....++++|+||....- ... ......
T Consensus 101 ~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 101 ARTKP----------------IGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHSCC----------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HhhCC----------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 00000 012567799999998652 2333333333 33456778877765321 111 122347
Q ss_pred eeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 216 FKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 216 ~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.+.+++.++..+++...+....... ..+.++.|++.++|.|..+..+...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 89999999999999988775433222 24568889999999998665554443
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.21 E-value=6.1e-11 Score=106.16 Aligned_cols=170 Identities=10% Similarity=0.107 Sum_probs=107.1
Q ss_pred ccccchhHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCC--C--CCeEEEEEeCCcCCHHHHHHH
Q 043737 63 TVVGLQSTFDRVWRCLME----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPN--D--FDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~--f~~~~wv~~~~~~~~~~~~~~ 134 (371)
.+.||++++++|...|.. +..+.+.|+|++|+|||++++.+++.+..... . .-.++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999888764 56789999999999999999999999832211 1 124667777777788899999
Q ss_pred HHHHhccCCCCCCcCCHHHHHHHHHHHh---CCCceEEEEeCCCCcccccccccccCCCCCCCc--EEE-EecCch----
Q 043737 135 IAKKINLFNESWNSRSLQEKSQDIVKNM---SNKKFVLLLDHIWELVDLSQVGLPVPCRTSASN--KTV-FTAREL---- 204 (371)
Q Consensus 135 l~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~--~il-iTsR~~---- 204 (371)
|+.++..... ........+..+...+ .+++++++||+++....-+.+...+.+.....+ .+| |+....
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999854321 1122233344444433 457899999999876532222222211111222 233 333321
Q ss_pred HHH----hhccCCCceeecCCChHHHHHHHHHHhC
Q 043737 205 EVC----GQMEAHKSFKVERLGYEDAWKLFEEKVG 235 (371)
Q Consensus 205 ~~~----~~~~~~~~~~l~~L~~~ea~~ll~~~~~ 235 (371)
.+. ..+ ....+.+++++.+|-.+++..++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 111 111 124689999999999999998874
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.18 E-value=1.2e-10 Score=105.20 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=113.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. .++.++.+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 56899999999999988776655699999999999999999998862 11111 23334433221111
Q ss_pred cCCCCCCcCCHHHHHHHHHHH--h-CCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCchH-HHh-hccCC
Q 043737 141 LFNESWNSRSLQEKSQDIVKN--M-SNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARELE-VCG-QMEAH 213 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~~-~~~-~~~~~ 213 (371)
........+... + .+++.++|+|+++... ..+.+...+. ....++.+|+||.... +.. .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhC
Confidence 011111111111 1 2457899999997653 2333444444 3445667777765532 111 12334
Q ss_pred CceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 214 KSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 214 ~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
..+.+.+++.++..+++...+....... ..+.+..++..++|.+..+.....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5789999999999999998875443222 245578899999999986554443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.17 E-value=2.2e-10 Score=105.91 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=111.3
Q ss_pred CccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI- 139 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l- 139 (371)
..++||+..++.+..++..+. ...+.|+|++|+|||++|+.+++... ...... ...+.. .. ....+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~---~~~~~~---~~-~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT---ATPCGV---CD-NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC---SSCCSS---SH-HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC---CCCCcc---cH-HHHHHhccCC
Confidence 569999999999999997654 45789999999999999999998872 111110 000000 00 111111100
Q ss_pred ----ccCCCC-CCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCchH-HH-hh
Q 043737 140 ----NLFNES-WNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTARELE-VC-GQ 209 (371)
Q Consensus 140 ----~~~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~~-~~-~~ 209 (371)
...... ............+... ..+++.++|+||++... ..+.+...+. ....++.+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHHH
Confidence 000000 0111222222211110 12457899999997542 2333333333 3344566666665432 21 11
Q ss_pred ccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 210 MEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 210 ~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
......+.+.+++.++..+++...+....... ..+.+..|++.++|+|..+..+..
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23346789999999999999987764322111 245578899999999998766553
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.06 E-value=2e-10 Score=95.56 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=42.3
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-..++||+++++++.+++.....+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999977667789999999999999999999886
No 21
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.06 E-value=1.3e-10 Score=100.50 Aligned_cols=177 Identities=6% Similarity=0.027 Sum_probs=105.1
Q ss_pred CCccccc---hhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 61 PPTVVGL---QSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 61 ~~~~vGR---~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
-..|+|+ +..++.+..+......+.+.|+|++|+|||+||+.+++... .....+.|++....... +..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH
Confidence 3567773 35666666666555678999999999999999999998873 22234566665432110 000
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----ccccccccCCCCCCC-cEEEEecCchH-------
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----LSQVGLPVPCRTSAS-NKTVFTARELE------- 205 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~-~~iliTsR~~~------- 205 (371)
.+ ..+ .++.+|||||++.... .+.+...+......+ ..+|+||+...
T Consensus 98 ~~--------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 LL--------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp GG--------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred HH--------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 00 001 3456999999975422 122222111001112 24777766322
Q ss_pred --HHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 043737 206 --VCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRAM 270 (371)
Q Consensus 206 --~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~l 270 (371)
+.........+.+++++.++..+++...+...... -..+.++.+++.++|++..+..+...+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~~ 220 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFDVLDRL 220 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 11111223678999999999999999877433222 234568889999999987776554433
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.01 E-value=5.7e-09 Score=98.41 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=108.0
Q ss_pred CCccccchhHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 61 PPTVVGLQSTF---DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 61 ~~~~vGR~~~~---~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
-..++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++.. ...| ..++... .....+ ..+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~i-r~~~~ 96 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKEI-REAIE 96 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHHH-HHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHHH-HHHHH
Confidence 46789999988 788888877777889999999999999999999887 2222 2222211 122221 11111
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEE-ecCchHH---Hhhcc
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVF-TARELEV---CGQME 211 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ili-TsR~~~~---~~~~~ 211 (371)
... .....+++.+|+||+++... ..+.+...+. .....+|. ||.+... .....
T Consensus 97 ~a~------------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le---~~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 97 RAR------------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE---DGTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHH------------------HHHHTTCCEEEEEETTTCC------CCHHHHH---TTSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHH------------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh---cCceEEEecCCCCcccccCHHHhC
Confidence 110 01113567899999998652 2333333332 12334443 5444321 11123
Q ss_pred CCCceeecCCChHHHHHHHHHHhCCCC--CC--CCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Q 043737 212 AHKSFKVERLGYEDAWKLFEEKVGKEI--LD--SHPDIPELAETVAKECGGLPLALITVGRA 269 (371)
Q Consensus 212 ~~~~~~l~~L~~~ea~~ll~~~~~~~~--~~--~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 269 (371)
....+.+.+++.++...++.+.+.... .. ...-..+..+.|++.++|.+..+..+...
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345788999999999999998875411 00 11123566888999999998766555443
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.6e-09 Score=99.31 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
-..++|+++.++.+..++..+..+.+.|+|++|+|||++|+.+++........-..+..++.+.......+. +....+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHHHHh
Confidence 366899999999999999776545599999999999999999988852000000123344443322333222 2222111
Q ss_pred cCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEecCch-HHHhh-ccCCCce
Q 043737 141 LFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTAREL-EVCGQ-MEAHKSF 216 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTsR~~-~~~~~-~~~~~~~ 216 (371)
..... ..... .....-.+++-++++|+++.... ...+...+. ......+++++|... .+... ......+
T Consensus 115 ~~~~~-~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVS-KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCC-CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhccc-ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCceE
Confidence 10000 00000 00011123456999999975432 222322222 223355666655432 22111 1223478
Q ss_pred eecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 217 KVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 217 ~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.+.+++.++....+...+....... ..+.++.|++.++|.|..+...
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999998775433222 2456899999999999865443
No 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.98 E-value=5.8e-09 Score=98.43 Aligned_cols=185 Identities=13% Similarity=0.112 Sum_probs=108.5
Q ss_pred Cccc-cchhH--HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVV-GLQST--FDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~v-GR~~~--~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.|+ |.... ...+........ ...+.|+|++|+||||||+.+++..... .....+++++.. .+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHH------HHHHHHHH
Confidence 4466 64433 333343333322 5789999999999999999999876211 111234555433 33444444
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCch---------
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTAREL--------- 204 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~--------- 204 (371)
.+... . ...+...+..++.+|+|||++.... .+.+...+......+..||+||...
T Consensus 178 ~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 44211 1 1123334443667999999975432 2222222211123467788887752
Q ss_pred HHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 205 EVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
.+...+..+..+.+++++.++-.+++.+.+.......+++ .+..|++.++|.+.-+.-+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHHHHHH
Confidence 2233334456789999999999999988774333233343 37888999999987665443
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=2.9e-09 Score=102.67 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=106.7
Q ss_pred CccccchhHHHHHHHHHhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 62 PTVVGLQSTFDRVWRCLME-----------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-----------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
..++|++..+++|.+++.. ...+.+.|+|++|+|||++|+.+++.. . + .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 5689999999999999864 134789999999999999999999887 1 1 344455544
Q ss_pred cCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHH--HHhCCCceEEEEeCCCCccc-----ccccccccCCCCCCCcEE
Q 043737 125 DLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIV--KNMSNKKFVLLLDHIWELVD-----LSQVGLPVPCRTSASNKT 197 (371)
Q Consensus 125 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~--~~l~~~~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~~~i 197 (371)
..+.. +....+....... .......... ....+++.+|+||+++.... +..+...+. ..+..+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~i 182 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPL 182 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCE
Confidence 43332 2222222111000 0000000000 01135678999999975532 122222222 122334
Q ss_pred EEecCch---HHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHH
Q 043737 198 VFTAREL---EVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITV 266 (371)
Q Consensus 198 liTsR~~---~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 266 (371)
|+++... .+.........+.+++++.++..+++...+.......+++ .+..|++.++|.+. ++..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN---VIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHH
Confidence 4443322 1222223345689999999999999987764433233333 37889999999554 45544
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.96 E-value=8.8e-09 Score=91.50 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=103.9
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++...-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999999887743 345689999999999999999999887 222 23333221100
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHH-HHhCCCceEEEEeCCCCcc----------c------ccccccccC-CC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIV-KNMSNKKFVLLLDHIWELV----------D------LSQVGLPVP-CR 190 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~----------~------~~~~~~~l~-~~ 190 (371)
. ...........+. ......+.+|+||+++... . +..+...+. ..
T Consensus 90 ----------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ----------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ----------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ----------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 0011111222222 2223567899999997531 0 111111110 02
Q ss_pred CCCCcEEEEecCchHH-----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHH
Q 043737 191 TSASNKTVFTARELEV-----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALI 264 (371)
Q Consensus 191 ~~~~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~ 264 (371)
...+..||.||..... .....-...+.+++.+.++..+++...+.......+.. ...++..+.| .|..|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 2345667777765422 11101123688999999999999998876554333333 5677778877 465555
Q ss_pred HHH
Q 043737 265 TVG 267 (371)
Q Consensus 265 ~~a 267 (371)
.+.
T Consensus 229 ~l~ 231 (285)
T 3h4m_A 229 AIC 231 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.95 E-value=3e-08 Score=90.30 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=103.4
Q ss_pred CCccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 61 PPTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
-..++|++..++.+..++.. ...+.|.|+|++|+|||+||+.+++.. ... .+.++.........+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~~---- 97 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGDL---- 97 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhHH----
Confidence 35689999999999888864 334678999999999999999998886 222 233333222111111
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCC-----------------CCCCCcE
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPC-----------------RTSASNK 196 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~-----------------~~~~~~~ 196 (371)
...+. . ..+..+|+||+++.... ...+...+.. ...++..
T Consensus 98 -------------------~~~~~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 -------------------AAILT-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------------HHHHH-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------------HHHHH-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 11111 1 23556999999985521 1111110000 0111345
Q ss_pred EEEecCchH-HHhh-c-cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Q 043737 197 TVFTARELE-VCGQ-M-EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRA 269 (371)
Q Consensus 197 iliTsR~~~-~~~~-~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 269 (371)
+|.+|.... +... . .....+.+++++.++...++...+...... ...+..+.+++.+.|+|..+..+...
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 555554422 1111 1 123578999999999999998876433211 12456788889999999766655443
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.86 E-value=3.1e-08 Score=91.34 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=104.2
Q ss_pred CCccccchhHHHH---HHHHHhcCC--ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe----CCcCCHHHH
Q 043737 61 PPTVVGLQSTFDR---VWRCLMEEQ--MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA----SKDLQLEQI 131 (371)
Q Consensus 61 ~~~~vGR~~~~~~---l~~~L~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~----~~~~~~~~~ 131 (371)
.+.|+|++..++. +.+.+..+. .+.+.|+|++|+|||+||+.+++.. ..... .+.++. +........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL---GPDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH---CSSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh---cccCC-cccccchhhhhcccchhHH
Confidence 4679999988766 444454443 3589999999999999999999998 22211 122221 122233344
Q ss_pred HHHHHHHhc-cC--------------------CC-------CCCcCCHHHHHHHH---HHHh--CCC----ceEEEEeCC
Q 043737 132 QGSIAKKIN-LF--------------------NE-------SWNSRSLQEKSQDI---VKNM--SNK----KFVLLLDHI 174 (371)
Q Consensus 132 ~~~l~~~l~-~~--------------------~~-------~~~~~~~~~~~~~l---~~~l--~~~----~~LlVlDdv 174 (371)
+........ .. .. .............+ .... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 443333211 00 00 00000011222222 1111 122 469999999
Q ss_pred CCcc--cccccccccCCCCCCCcEEEEecC-c----------------hHHHhhccCCCceeecCCChHHHHHHHHHHhC
Q 043737 175 WELV--DLSQVGLPVPCRTSASNKTVFTAR-E----------------LEVCGQMEAHKSFKVERLGYEDAWKLFEEKVG 235 (371)
Q Consensus 175 ~~~~--~~~~~~~~l~~~~~~~~~iliTsR-~----------------~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~ 235 (371)
+... ....+...+. ..... .++++|. . +.+.. ....+.+++++.++..+++...+.
T Consensus 199 ~~l~~~~~~~L~~~le-~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 199 HMLDIESFSFLNRALE-SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp GGSBHHHHHHHHHHTT-CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhh-CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHH
Confidence 8652 2222222222 22222 3333332 1 12222 234589999999999999998775
Q ss_pred CCCCCCCCCHHHHHHHHHHHcC-CCcHHHHHHHH
Q 043737 236 KEILDSHPDIPELAETVAKECG-GLPLALITVGR 268 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~a~ 268 (371)
..... -..+....|++.+. |.|..+..+..
T Consensus 274 ~~~~~---~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 274 EEDVE---MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp HTTCC---BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCC---CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 43222 22456888999997 88776555443
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=3.9e-09 Score=96.82 Aligned_cols=196 Identities=8% Similarity=0.082 Sum_probs=105.0
Q ss_pred CccccchhHHHHHHHHH-hcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC-C--CCCe--------------------E
Q 043737 62 PTVVGLQSTFDRVWRCL-MEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP-N--DFDF--------------------V 117 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~--~f~~--------------------~ 117 (371)
..++|++..++.+.+++ ..+..+.+.|+|++|+||||+++.++..+.... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999988 555444499999999999999999988641111 0 0000 1
Q ss_pred EEEEeCCcC-CHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCC
Q 043737 118 IWVVASKDL-QLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSAS 194 (371)
Q Consensus 118 ~wv~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~ 194 (371)
+.+..+... ......++++..+..... ..... .+ ..+.+++-++|+|+++.... .+.+...+. ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCC
Confidence 111111000 000012222222211000 00000 00 00233567999999986422 222322222 22345
Q ss_pred cEEEEecCch-HHH-hhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHH
Q 043737 195 NKTVFTAREL-EVC-GQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGR 268 (371)
Q Consensus 195 ~~iliTsR~~-~~~-~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~ 268 (371)
+.+|++|... .+. ...+....+.+.+++.++..+++...+.......+. .+.+..|++.++|.+..+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6677666542 221 112334678999999999999998876433322220 23478899999999876555443
No 30
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.84 E-value=1.8e-08 Score=91.25 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred CCccc-cch--hHHHHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 61 PPTVV-GLQ--STFDRVWRCLMEE--QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 61 ~~~~v-GR~--~~~~~l~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
-++|+ |.. .....+...+... ....+.|+|++|+|||+||+.+++..... -..+++++. ..+...+
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~------~~~~~~~ 80 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA------DDFAQAM 80 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH------HHHHHHH
Confidence 35565 533 2334444544433 34689999999999999999999887311 123455543 2333344
Q ss_pred HHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----ccccccccCCCCCCCcEEEEecCch-------
Q 043737 136 AKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----LSQVGLPVPCRTSASNKTVFTAREL------- 204 (371)
Q Consensus 136 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~iliTsR~~------- 204 (371)
...+.. .... .+...+. ++.+|+||+++.... .+.+...+......+..+++||...
T Consensus 81 ~~~~~~-------~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 81 VEHLKK-------GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHH-------TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHc-------CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 433321 0111 1222222 366999999976432 1222222211122355777776532
Q ss_pred --HHHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 205 --EVCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 205 --~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.+...+.....+.+++ +.++..+++...+....... ..+....|++.+ |....+..+
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHHHHH
Confidence 1222233345789999 99999999988875333222 245688899999 877654433
No 31
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.83 E-value=1.5e-07 Score=82.95 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred CccccchhHHHHHHHH-------Hh---cCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 62 PTVVGLQSTFDRVWRC-------LM---EEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~-------L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
..++|....++++... +. ....+.+.|+|++|+|||+||+.+++.. ...| +.++....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 4578888777776663 32 2346789999999999999999999886 2221 22222210
Q ss_pred HHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc---------c---ccccccccCC--CCCCCcEE
Q 043737 132 QGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV---------D---LSQVGLPVPC--RTSASNKT 197 (371)
Q Consensus 132 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~---~~~~~~~l~~--~~~~~~~i 197 (371)
+ .... ...........+......++.+|+||+++... . ++.+...+.. .......|
T Consensus 101 -------~--~g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 -------M--IGFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------C--TTCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------h--cCCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0 0000 00000111122222234567899999986531 0 1112112210 12233445
Q ss_pred EEecCchHHHhh---ccC-CCceeecCCCh-HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC------cHHHHHH
Q 043737 198 VFTARELEVCGQ---MEA-HKSFKVERLGY-EDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL------PLALITV 266 (371)
Q Consensus 198 liTsR~~~~~~~---~~~-~~~~~l~~L~~-~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Plal~~~ 266 (371)
|.||........ ... ...+.+++++. ++...++.... .. ..+....+++.+.|. +.++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----CC---CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 666666543221 111 34678899988 66666665532 11 234578888888883 3333333
Q ss_pred HHHHcCCCChhHHHHHHHHHhcc
Q 043737 267 GRAMASKKTPREWEHAIEVLRSS 289 (371)
Q Consensus 267 a~~l~~~~~~~~~~~~l~~l~~~ 289 (371)
...........+...++.+...
T Consensus 243 -~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 -EMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp -HHHTTSCGGGHHHHHHHHHHHT
T ss_pred -HHHhhhchHHHHHHHHHHHHHc
Confidence 2333324445666666555443
No 32
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.80 E-value=9.6e-08 Score=86.81 Aligned_cols=171 Identities=12% Similarity=0.112 Sum_probs=101.1
Q ss_pred chhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCC-------------------CCCeEEEEEeC---
Q 043737 67 LQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPN-------------------DFDFVIWVVAS--- 123 (371)
Q Consensus 67 R~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~~~--- 123 (371)
.++..+.+...+.+++ ...+.++|++|+|||++|+.+++.+..... +++ +.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3566777888877655 457999999999999999999988721110 111 2222221
Q ss_pred CcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCCCCCCcEEEEec
Q 043737 124 KDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCRTSASNKTVFTA 201 (371)
Q Consensus 124 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~iliTs 201 (371)
....++. .+.+...+.... ..+++-++|+|+++.... .+.+...+. ....++.+|++|
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~t 145 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLAT 145 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEEE
T ss_pred CCCCHHH-HHHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEEe
Confidence 1111111 122222221100 124567999999986532 333433343 334456666555
Q ss_pred Cch-HHHh-hccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHH
Q 043737 202 REL-EVCG-QMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITV 266 (371)
Q Consensus 202 R~~-~~~~-~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 266 (371)
.+. .+.. ..+....+.+.+++.++..+++.... .. ..+.+..+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 543 2222 22445679999999999999998875 11 1345688999999999766443
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.79 E-value=6.3e-08 Score=87.63 Aligned_cols=181 Identities=10% Similarity=0.011 Sum_probs=104.4
Q ss_pred CCccccchhHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQ-MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKI 139 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l 139 (371)
-+.++|++..++.+.+++..+. ..++.++|++|+|||++|+.+++.. . ..++.++.+.. ... .....+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~-~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KID-FVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHH-HHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHH-HHHHHHHHH
Confidence 4679999999999999998654 3677888999999999999999887 1 23445554332 222 222222221
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc---cccccccccCCCCCCCcEEEEecCchH-HHh-hccCCC
Q 043737 140 NLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV---DLSQVGLPVPCRTSASNKTVFTARELE-VCG-QMEAHK 214 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~~~iliTsR~~~-~~~-~~~~~~ 214 (371)
....+ ..+++.++++||++... ..+.+...+. ....++.+|+||.... +.. ..+...
T Consensus 97 ~~~~~-----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 97 ASAAS-----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHBCC-----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred Hhhcc-----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 11000 12367799999998664 2222322222 2224567777766532 111 011234
Q ss_pred ceeecCCChHHHHHH-------HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHHHH
Q 043737 215 SFKVERLGYEDAWKL-------FEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVGRA 269 (371)
Q Consensus 215 ~~~l~~L~~~ea~~l-------l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a~~ 269 (371)
.+.+++++.++-.++ +...+.......++ .+.+..+++.++|.+..+......
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 789999998874333 22222222212222 255888999999887654433333
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=4.1e-08 Score=89.52 Aligned_cols=180 Identities=14% Similarity=0.196 Sum_probs=104.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKDLQLEQIQGSIAKKIN 140 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~l~~~l~ 140 (371)
..++|.+..++.|..++..+..+.+.++|++|+||||+|+.++.... ...+. .+..++.+...+...+. .....+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 45789999999999988776655599999999999999999998862 11111 22223332222222221 1111111
Q ss_pred cCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEecCch-HHHh-hccCCCce
Q 043737 141 LFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTAREL-EVCG-QMEAHKSF 216 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTsR~~-~~~~-~~~~~~~~ 216 (371)
.... ...+.+-++|+|+++... ..+.+...+. .....+.++++|... .+.. ..+....+
T Consensus 102 ~~~~----------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 102 STRQ----------------IFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HBCC----------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hhcc----------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhceeE
Confidence 0000 012346699999997542 2222222222 223455666655432 1111 11234578
Q ss_pred eecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHH
Q 043737 217 KVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALI 264 (371)
Q Consensus 217 ~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 264 (371)
.+.+++.++..+.+...+.......+ .+..+.+++.++|.+.-+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 89999999999999887743322222 3457889999999887443
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.75 E-value=3.2e-08 Score=88.89 Aligned_cols=150 Identities=12% Similarity=0.158 Sum_probs=85.5
Q ss_pred ccccchhHHHHHHHHHh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC--eEEEEEeCCc
Q 043737 63 TVVGLQSTFDRVWRCLM---------------EEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD--FVIWVVASKD 125 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~ 125 (371)
.++|.+...+.|.+.+. ......+.|+|++|+|||+||+.+++.+.. ..... ..+.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRDD- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHHH-
Confidence 48999988888876653 223457999999999999999988887621 11111 222332111
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc-----------ccccccccccCCCCCCC
Q 043737 126 LQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL-----------VDLSQVGLPVPCRTSAS 194 (371)
Q Consensus 126 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~ 194 (371)
+. ..... ........+.... ++.+|+||+++.. .....+...+. ....+
T Consensus 110 -------------l~---~~~~g-~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~ 169 (309)
T 3syl_A 110 -------------LV---GQYIG-HTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDD 169 (309)
T ss_dssp -------------TC---CSSTT-CHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTT
T ss_pred -------------hh---hhccc-ccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCC
Confidence 00 00011 1111122222222 3459999999843 11222322332 33445
Q ss_pred cEEEEecCchHH----------HhhccCCCceeecCCChHHHHHHHHHHhCC
Q 043737 195 NKTVFTARELEV----------CGQMEAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 195 ~~iliTsR~~~~----------~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
..+|+||..... ... ....+.+++++.++-.+++...+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 677777754321 111 1267899999999999999887753
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.74 E-value=1.3e-07 Score=82.65 Aligned_cols=183 Identities=10% Similarity=0.090 Sum_probs=99.1
Q ss_pred CccccchhHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+...+.|.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 568999988877766542 1 234578999999999999999999987 222 23344332110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-----------------ccccccccCC-CC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-----------------LSQVGLPVPC-RT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~-~~ 191 (371)
.............+.......+.+|+||+++.... +..+...+.. ..
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00011111111222222234678999999986410 1111111110 12
Q ss_pred CCCcEEEEecCchHH-Hhhc-c---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHH
Q 043737 192 SASNKTVFTARELEV-CGQM-E---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALIT 265 (371)
Q Consensus 192 ~~~~~iliTsR~~~~-~~~~-~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 265 (371)
..+..+|.||..... .... . -...+.++..+.++-.+++...+.... ...........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 234555556654332 1111 1 124678889999999999988764333 222222335778888888754 5555
Q ss_pred HHHH
Q 043737 266 VGRA 269 (371)
Q Consensus 266 ~a~~ 269 (371)
+...
T Consensus 221 l~~~ 224 (262)
T 2qz4_A 221 ICNE 224 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.74 E-value=6.4e-07 Score=80.87 Aligned_cols=181 Identities=12% Similarity=0.116 Sum_probs=104.3
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+...+.|.+.+.. ...+.|.|+|++|+|||+||+.+++... . ...+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~--~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N--STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---S--CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---C--CcEEEEEhHHHHh--
Confidence 5689999888888776631 1346899999999999999999998861 1 1223333332110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCccc-------------ccccccccCC--CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVD-------------LSQVGLPVPC--RTSA 193 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 193 (371)
...... +.....+... ...++.+|+||+++.... ...+...+.. ....
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 001112 2222233322 235678999999975411 0111111110 1234
Q ss_pred CcEEEEecCchH-----HHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHHH
Q 043737 194 SNKTVFTARELE-----VCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITVG 267 (371)
Q Consensus 194 ~~~iliTsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a 267 (371)
+..||.||.... +.+ .-...+.++..+.++-.+++...+....... .......|++.+.|. +-.|..++
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555554321 122 2235678888899999999988875443211 234578899999887 55566665
Q ss_pred HHH
Q 043737 268 RAM 270 (371)
Q Consensus 268 ~~l 270 (371)
...
T Consensus 224 ~~A 226 (322)
T 1xwi_A 224 RDA 226 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.70 E-value=3.5e-07 Score=83.88 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=103.6
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.++... .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999999887642 345689999999999999999999886 22 233444432110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc-------------ccccccccC---CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD-------------LSQVGLPVP---CRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~---~~~~ 192 (371)
. ...........+.... ..++.+|+||+++.... ...+...+. ....
T Consensus 156 ---------------~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ---------------K-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ---------------S-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ---------------c-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0001112222222222 35678999999964311 111111111 0122
Q ss_pred CCcEEEEecCchH-HHhh-c-cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHHHHHH
Q 043737 193 ASNKTVFTARELE-VCGQ-M-EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALITVGR 268 (371)
Q Consensus 193 ~~~~iliTsR~~~-~~~~-~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a~ 268 (371)
.+..||.||.... +... . .-...+.+...+.++..+++...+....... ..+....|++.+.| .+..|..++.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555554422 1111 1 1224678888899999999888764432111 24557889999998 5666766654
Q ss_pred H
Q 043737 269 A 269 (371)
Q Consensus 269 ~ 269 (371)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.69 E-value=4.7e-08 Score=80.56 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=42.3
Q ss_pred CCccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999977667788999999999999999999886
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.67 E-value=6.6e-07 Score=79.80 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=101.4
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.++... .. ..+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 5689999999998887632 235689999999999999999999886 22 223344322110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCcccc-------------ccccc---ccCC-CC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVDL-------------SQVGL---PVPC-RT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~-------------~~~~~---~l~~-~~ 191 (371)
. ...........+... ....+.+|+||+++....- ..+.. ..+. ..
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 111122222222222 2356789999999754210 00110 1110 11
Q ss_pred CCCcEEEEecCchH-----HHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHH
Q 043737 192 SASNKTVFTARELE-----VCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALIT 265 (371)
Q Consensus 192 ~~~~~iliTsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 265 (371)
..+..||.||.... +.+. -...+.++..+.++-..++...+...... -..+....+++.+.|.+- .|..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHH
Confidence 13445555665432 2221 22456777778888888887776433211 123457889999999875 6655
Q ss_pred HHH
Q 043737 266 VGR 268 (371)
Q Consensus 266 ~a~ 268 (371)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.67 E-value=6.6e-07 Score=83.05 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=100.6
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.|..++.. ...+.|.|+|++|+|||+||+.++... .. ..+.++++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5689999999999888732 234689999999999999999998886 22 223333322111
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCccc-------------ccccccc---cCCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVD-------------LSQVGLP---VPCRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~ 192 (371)
.. .... ......+... ....+.+|+||+++.... ...+... +.....
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0011 1112222222 234567999999975411 0011000 110112
Q ss_pred CCcEEEEecCchH-HHhh-ccC-CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH-HHHHHHH
Q 043737 193 ASNKTVFTARELE-VCGQ-MEA-HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL-ALITVGR 268 (371)
Q Consensus 193 ~~~~iliTsR~~~-~~~~-~~~-~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~a~ 268 (371)
....||.||.... +... ... ...+.+...+.++-.+++...+...... -..+....|++.+.|..- .|..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3344555554422 1111 112 2457888899999999998887553322 223457889999988644 6665544
Q ss_pred H
Q 043737 269 A 269 (371)
Q Consensus 269 ~ 269 (371)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.67 E-value=3.5e-07 Score=82.62 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.|.+.+.- ...+.+.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 5689999999999887731 124679999999999999999999887 222 2233221
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc-------------ccccccccCC--CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD-------------LSQVGLPVPC--RTSA 193 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 193 (371)
++. .. .....+.....+.... ..++.+|+||+++.... ...+...+.. ....
T Consensus 86 ~l~----~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLV----SK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----TT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHh----hc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 00 0111222233333222 35678999999975421 1111111110 1234
Q ss_pred CcEEEEecCchHH-----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHHHHH
Q 043737 194 SNKTVFTARELEV-----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALITVG 267 (371)
Q Consensus 194 ~~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a 267 (371)
+..||.||..... .+ .-...+.++..+.++-.+++...+....... .......|++.+.| .+-.|..++
T Consensus 154 ~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4555556654321 22 2234678888999999999998886543211 23457888898887 455666554
Q ss_pred HH
Q 043737 268 RA 269 (371)
Q Consensus 268 ~~ 269 (371)
..
T Consensus 229 ~~ 230 (322)
T 3eie_A 229 KD 230 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.64 E-value=2.8e-07 Score=84.44 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=102.5
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.|...+.. ...+.|.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 5689999999999887631 123568999999999999999999987 222 2223221
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH-hCCCceEEEEeCCCCccc-------------ccccccccCC--CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKN-MSNKKFVLLLDHIWELVD-------------LSQVGLPVPC--RTSA 193 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 193 (371)
++.. .. .... +.....+... ...++.+|+||+++.... ...+...+.. ....
T Consensus 119 ~l~~----~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DLVS----KW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHHS----CC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHhh----hh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1111 00 1111 2222222222 235778999999985421 1111111110 1233
Q ss_pred CcEEEEecCchH-----HHhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHHHHH
Q 043737 194 SNKTVFTARELE-----VCGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALITVG 267 (371)
Q Consensus 194 ~~~iliTsR~~~-----~~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~a 267 (371)
+..||.||.... +.+ .-...+.++..+.++-.+++...+....... .......|++.+.| .+-.|..++
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555555432 222 2235678888999999999998876543211 23457889999988 455566555
Q ss_pred H
Q 043737 268 R 268 (371)
Q Consensus 268 ~ 268 (371)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=2.1e-07 Score=83.17 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=90.8
Q ss_pred cchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhccCCC
Q 043737 66 GLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIAKKINLFNE 144 (371)
Q Consensus 66 GR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~~~~~ 144 (371)
|-++.++.|...+.+++.+.+.++|++|+|||++|..+++........+..+.+++.+. ..+++.+ +++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 45667788888887766789999999999999999999875311112222345555432 2333333 33444443211
Q ss_pred CCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcc--cccccccccCCCCCCCcEEEEec-CchHHHhhccCCCceeecCC
Q 043737 145 SWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELV--DLSQVGLPVPCRTSASNKTVFTA-RELEVCGQMEAHKSFKVERL 221 (371)
Q Consensus 145 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~iliTs-R~~~~~~~~~~~~~~~l~~L 221 (371)
..+++-++|+|+++... ..+.+...+. ....++.+|++| ....+....... .+++.++
T Consensus 79 -----------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 -----------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp -----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred -----------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 02445699999998653 2333444443 334455665554 333443333334 8999999
Q ss_pred ChHHHHHHHHHHh
Q 043737 222 GYEDAWKLFEEKV 234 (371)
Q Consensus 222 ~~~ea~~ll~~~~ 234 (371)
+.++..+++....
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.60 E-value=7.8e-07 Score=79.53 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=99.3
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..++|.+..+++|.+++.. ...+.+.|+|++|+|||+||+.++... ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4689999988888877642 345689999999999999999999887 221 22222 2
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.++...+ .+. ... .....+.......+.+++||+++.... ...+...+. ...
T Consensus 83 ~~l~~~~---~g~-----~~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE-----SEA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT-----CTT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc-----hHH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2332222 111 111 112222222235688999999974210 111111111 012
Q ss_pred CCCcEEEEecCchH-HHhh-cc---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHH
Q 043737 192 SASNKTVFTARELE-VCGQ-ME---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLA 262 (371)
Q Consensus 192 ~~~~~iliTsR~~~-~~~~-~~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 262 (371)
..+..||.||.... +... .. -...+.++..+.++-.+++...+.......+.+ ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 33556666665442 2111 11 224688999999999999988876544332233 35566678887654
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.58 E-value=1.5e-06 Score=82.04 Aligned_cols=183 Identities=12% Similarity=0.088 Sum_probs=102.4
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+...+.|...+.. ...+.|.|+|++|+|||+||+.++.... . ..++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~----~~~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N----STFFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C----CCEEEEeHH----
Confidence 4589999998888887631 2346899999999999999999998861 1 122333221
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-------------ccccccccCC--CCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-------------LSQVGLPVPC--RTSAS 194 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~~ 194 (371)
++.... .+. ............ ....+.+|+||+++.... ...+...+.. ....+
T Consensus 203 ~l~~~~---~g~-----~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKW---LGE-----SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhh---cch-----HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111111 110 111222222211 235678999999985411 1111111210 12345
Q ss_pred cEEEEecCchHH-Hhh-c-cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHHHHH
Q 043737 195 NKTVFTARELEV-CGQ-M-EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITVGRA 269 (371)
Q Consensus 195 ~~iliTsR~~~~-~~~-~-~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a~~ 269 (371)
..||.||..... ... . .-...+.++..+.++-..++...+....... .......|++.+.|. +-.|..++..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 556656654321 111 1 1224677888888888999988875433111 234578899999884 5566665543
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.4e-06 Score=77.44 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=96.8
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
++.|-++..++|.+.+.- ...+-|.++||+|+|||.||+.++... ... .+.++.+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc--
Confidence 367888888877766531 245789999999999999999999998 322 23333322110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.+... .+..+..+.... ...+++|+||+++.... +..+...+. ...
T Consensus 221 ---------------k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ---------------KYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ---------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ---------------cccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 00111 112222222222 35789999999984311 111111111 122
Q ss_pred CCCcEEEEecCc-hHH----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTARE-LEV----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~-~~~----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||.||.. ..+ .+...-...+.++.-+.++-.++|+.++.......+-+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 334445555543 222 21112346788888889999999988876654333333 567778888754
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.56 E-value=5.6e-07 Score=85.53 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CCC-C-eEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--NDF-D-FVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.++.++...+.......+.|+|++|+|||++|+.+++...... ... + .++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 46899999999999999776666789999999999999999998862111 001 1 12222222 0
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHH-------hhc
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVC-------GQM 210 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~-------~~~ 210 (371)
.. ... ........... .-..++.+|++| ........+...+ .....++|.+|...... ...
T Consensus 247 ~~---~g~-~e~~~~~~~~~---~~~~~~~iLfiD--~~~~a~~~L~~~L---~~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KY---RGE-FEDRLKKVMDE---IRQAGNIILFID--AAIDASNILKPSL---ARGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHHHHH---HHTCCCCEEEEC--C--------CCCT---TSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cc---cch-HHHHHHHHHHH---HHhcCCeEEEEe--CchhHHHHHHHhh---cCCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00 000 01111222222 223567899999 1222222222222 23345566555443310 011
Q ss_pred cCCCceeecCCChHHHHHHHHHHhCC
Q 043737 211 EAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 211 ~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
.....+.+++.+.++..+++......
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 22346899999999999999877643
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.53 E-value=3e-07 Score=93.94 Aligned_cols=154 Identities=12% Similarity=0.178 Sum_probs=86.2
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCC--CC--CCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTP--ND--FDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.++.++.+.+.....+.+.|+|++|+|||+||+.+++...... .. -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 56899999999999999776666789999999999999999998862111 11 12344444322100
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC--CCceEEEEeCCCCccc-------cc---ccccccCCCCCCCcEEEEecCchH
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS--NKKFVLLLDHIWELVD-------LS---QVGLPVPCRTSASNKTVFTARELE 205 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~---~~~~~l~~~~~~~~~iliTsR~~~ 205 (371)
+.. ...........+...+. +++.+|+||+++.... .+ .+...+. ..+..+|.+|....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 11122333333333332 3678999999976431 11 1111111 23344555554433
Q ss_pred HH------hhccCCCceeecCCChHHHHHHHHHHh
Q 043737 206 VC------GQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 206 ~~------~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
.. ........+.+++++.++..++++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 21 111233468999999999999997543
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.51 E-value=1.7e-06 Score=82.44 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=102.1
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..++|.+..+++|.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 4589999999999887642 344679999999999999999998886 22 22333321
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-------------ccccccccC-CCCCCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-------------LSQVGLPVP-CRTSAS 194 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~-~~~~~~ 194 (371)
.+. ..+ ...........+.....+++.+|+||+++.... ...+...+. .....+
T Consensus 273 -~l~----~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -EIM----SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -HHH----TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -Hhh----hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 100 111111222233333346778999999953211 111111111 012334
Q ss_pred cEEEEecCchH-HHhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-cHHHHHHH
Q 043737 195 NKTVFTARELE-VCGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL-PLALITVG 267 (371)
Q Consensus 195 ~~iliTsR~~~-~~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~a 267 (371)
..||.||.... +...+ .-...+.+...+.++-.+++...+.......+.. ..++++.+.|+ +-.|..+.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHHH
Confidence 45555555432 21111 1224688999999999999998876544333333 45667777775 55555443
No 51
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.49 E-value=1.8e-07 Score=74.11 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999888754 344578899999999999999998875
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3.9e-06 Score=78.19 Aligned_cols=170 Identities=13% Similarity=0.167 Sum_probs=95.5
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|-++..++|.+.+.- ...+-|.++||+|+|||.||+.++... ... .+.++.+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc--
Confidence 367888888777666531 245789999999999999999999998 222 23333322110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHH-HhCCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVK-NMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.+... .+..+..+.. .-...+++|+||+++.... +..+...+. ...
T Consensus 254 ---------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ---------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ---------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ---------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00111 1122222222 2235789999999974311 011111111 123
Q ss_pred CCCcEEEEecCchH-HHhhc-cC---CCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTARELE-VCGQM-EA---HKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~~~-~~~~~-~~---~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||.||-... +-..+ .. ...+.++.-+.++-.++|+.++.......+.+ ...|++.+.|+-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 34455666554432 21111 12 34578887888888888887775544333333 467778888754
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.5e-06 Score=76.22 Aligned_cols=170 Identities=12% Similarity=0.157 Sum_probs=96.3
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|-++..++|.+.+.- ...+-|.++||+|+|||.||+.++... ... .+.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 478888888887765421 356789999999999999999999998 222 23333322100
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHH-HhCCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVK-NMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.+... .+..+..+.. .-...+++|+||+++.... +..+...+. ...
T Consensus 282 ---------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ---------------KYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ---------------CSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ---------------ccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00111 1122222222 2235789999999974311 001111111 122
Q ss_pred CCCcEEEEecCch-HH----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTAREL-EV----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~~-~~----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||.||-.. .+ .+...-...+.++.-+.++-.++|+.++.......+-+ ...|++.|.|+-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 3344455555432 22 11112345688888888888999988876554333333 466778888853
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.46 E-value=1.6e-06 Score=87.60 Aligned_cols=157 Identities=13% Similarity=0.224 Sum_probs=91.5
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CCeEEE-EEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPND---FDFVIW-VVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~w-v~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.+++++.+.|.......+.|+|++|+|||++|+.+++........ ....+| ++.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 5689999999999999977667788999999999999999999876211111 122222 211110
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCcc--------cccccccccCCCCCCCcEEEEecCchHHHh
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELV--------DLSQVGLPVPCRTSASNKTVFTARELEVCG 208 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~--------~~~~~~~~l~~~~~~~~~iliTsR~~~~~~ 208 (371)
+. . .......+.....+...+. .++.+|+||+++... ..+......+........+|.+|.......
T Consensus 254 -~~--~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 -LA--G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp --C--C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHC
T ss_pred -hc--c-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhh
Confidence 00 0 0022234444444444444 357899999998551 111111111112234556666665443211
Q ss_pred h-------ccCCCceeecCCChHHHHHHHHHHh
Q 043737 209 Q-------MEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 209 ~-------~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
. ......+.+++.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 1122358899999999998887654
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=6.3e-06 Score=71.77 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=95.0
Q ss_pred CccccchhHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++++.+.+. . ...+-+.|+|++|+|||+||+.++... ... .+.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH--
Confidence 568999888777665432 1 124568999999999999999999886 222 23333221100
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccC-CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 192 (371)
.............+.......+.++++|+++.... +..+...+. ....
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00111122222223333345678999999953211 011111111 0123
Q ss_pred CCcEEEEecCchH-HHhhc-c---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CcHHHHHH
Q 043737 193 ASNKTVFTARELE-VCGQM-E---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGG-LPLALITV 266 (371)
Q Consensus 193 ~~~~iliTsR~~~-~~~~~-~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 266 (371)
.+..||.||.... +.... . -...+.++..+.++-.+++...+.......+.. ...++..+.| ++--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 3445555655432 21111 1 124577777788888888887765443222222 4556777778 66655544
No 56
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=7.2e-06 Score=75.61 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=94.2
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
++.|-++..++|.+.+.- ...+-|.++||+|+|||.||++++... ... .+.++.+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhh---
Confidence 357788877777665431 245789999999999999999999998 222 2233322110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.. .....+..+..+.... ...+++|+||+++.... +..+...+. ...
T Consensus 254 --------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 --------------QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 00 1111122222222222 35789999999974311 001111111 122
Q ss_pred CCCcEEEEecCc-hHHHhhc-c---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTARE-LEVCGQM-E---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~-~~~~~~~-~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||.||-. ..+-..+ . -...+.++.-+.++-.++|+.++.......+-+ ...|++.+.|+-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 334445555543 3332221 1 123577887788888888988876554333333 567778888753
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.40 E-value=8.6e-07 Score=77.80 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=90.8
Q ss_pred CccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+..++.+.+.+.. ...+.+.|+|++|+|||+||+.++... ...|- .++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH--
Confidence 5689999888887776541 123458899999999999999999987 22221 111111000
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-----------------ccccccccCCC--
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-----------------LSQVGLPVPCR-- 190 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~~-- 190 (371)
.+... ......... .......+.+|+||+++.... +..+...+...
T Consensus 83 --------~~~~~----~~~~~~~~~---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 --------MFVGL----GASRVRDLF---ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------SCSSS----CSSSSSTTH---HHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hhcch----HHHHHHHHH---HHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00000 011111111 111224568999999975421 11222222101
Q ss_pred CCCCcEEEEecCchHHH-hh-c---cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcH
Q 043737 191 TSASNKTVFTARELEVC-GQ-M---EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPL 261 (371)
Q Consensus 191 ~~~~~~iliTsR~~~~~-~~-~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 261 (371)
......||.||...... .. . .-...+.++..+.++-.+++...+.......+.. ...+++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 11224566666554321 11 1 1234678888999999999988775433222222 2345556666653
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=6.5e-06 Score=76.54 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=89.7
Q ss_pred ccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|-++..++|.+.+.- ...+-|.++||+|+|||+||+.+++.. ..+ .+.++.+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc--
Confidence 468888888887776531 245679999999999999999999998 222 23333332110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHH-HhCCCceEEEEeCCCCccc----------------ccccccccC-CCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVK-NMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRT 191 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~ 191 (371)
.+... .+..+..+.. .-...++++++|+++.... +..+...+. ...
T Consensus 245 ---------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ---------------KYLGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ---------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ---------------cccch-hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 00111 1122222222 2235789999999963210 111111111 123
Q ss_pred CCCcEEEEecCchH-HHhh-ccC---CCceeecCCChHH-HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SASNKTVFTARELE-VCGQ-MEA---HKSFKVERLGYED-AWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~~~iliTsR~~~-~~~~-~~~---~~~~~l~~L~~~e-a~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
..+..||.||.... +-.. ..+ ...+.++.++..+ -..+|...+.......+.+ ...|++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 34445555554422 2111 112 2357777675544 4556666554433233333 567777887753
No 59
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.39 E-value=3e-06 Score=75.78 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=39.0
Q ss_pred CccccchhHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|++..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999887754 235678899999999999999999887
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.38 E-value=1.1e-05 Score=73.16 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=94.6
Q ss_pred CccccchhHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLME-----EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
..++|.+..++.+...+.. .....++|+|++|+||||||+.++... ...+ ...+........+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~---~~~sg~~~~~~~~------ 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNI---HVTSGPVLVKQGD------ 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCE---EEEETTTCCSHHH------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEechHhcCHHH------
Confidence 5689998888887776643 234679999999999999999999987 2221 1111111011111
Q ss_pred HHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccCCC-----------------CCCCcEE
Q 043737 137 KKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVPCR-----------------TSASNKT 197 (371)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~-----------------~~~~~~i 197 (371)
.. .+...+ .++.++++|+++.... .+.+...+... ......+
T Consensus 93 -----------------l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11 111112 2344778888864321 11110000000 0011222
Q ss_pred -EEecCchHHHhhc--cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 198 -VFTARELEVCGQM--EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 198 -liTsR~~~~~~~~--~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
..|++...+.... .....+.+++.+.++-.+++.+....... .-..+.+..|++.+.|.|..+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 2355543332211 11234789999999999999887643221 1224568999999999997654443
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.6e-06 Score=78.35 Aligned_cols=170 Identities=10% Similarity=0.098 Sum_probs=93.9
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..+.|-++..++|.+.+.- ...+-|.++||+|+|||.||+.++... ... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 3468888888888766431 246789999999999999999999998 222 23333322100
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcc-------c---------ccccccccCC-C
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELV-------D---------LSQVGLPVPC-R 190 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~---------~~~~~~~l~~-~ 190 (371)
. .....+..+..+.... ...+++|+||+++... . +..+...+.. .
T Consensus 254 ----------------~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------M-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------S-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------c-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 0111112222222222 3468999999996320 0 0111111111 2
Q ss_pred CCCCcEEEEecCchH-HHhhc-c---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043737 191 TSASNKTVFTARELE-VCGQM-E---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL 259 (371)
Q Consensus 191 ~~~~~~iliTsR~~~-~~~~~-~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 259 (371)
...+..||.||.... +-..+ . -...+.++.-+.++-.++|+.++.......+-+ ...|++.+.|+
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 233445555654432 21111 1 224578888888888888887765433223233 56777888875
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.36 E-value=4.6e-06 Score=84.23 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=83.9
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC---C-eEEEEEeCCcCCHHHHHHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF---D-FVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f---~-~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
+.++||+.+++++...+.......+.|+|++|+|||++|+.+++........+ . .++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 56899999999999999776667789999999999999999998862211111 1 1122222
Q ss_pred HhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHHh-------hc
Q 043737 138 KINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVCG-------QM 210 (371)
Q Consensus 138 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~~-------~~ 210 (371)
+............... ......++.+|++|. .......+... ......++|.+|....... ..
T Consensus 245 --g~~~~G~~e~~l~~~~---~~~~~~~~~iLfiD~--~~~~~~~L~~~---l~~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVM---DEIRQAGNIILFIDA--AIDASNILKPS---LARGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ----------CTTHHHHH---HHHHTCCCCEEEECC----------CCC---TTSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccccchHHHHHHHHH---HHHHhcCCEEEEEcC--chhHHHHHHHH---HhcCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000000111122222 222235678999992 12222222222 2234556666655443100 01
Q ss_pred cCCCceeecCCChHHHHHHHHHHhCC
Q 043737 211 EAHKSFKVERLGYEDAWKLFEEKVGK 236 (371)
Q Consensus 211 ~~~~~~~l~~L~~~ea~~ll~~~~~~ 236 (371)
.....+.+++.+.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 12356899999999999999876543
No 63
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=5.1e-07 Score=74.24 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCC
Q 043737 67 LQSTFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFN 143 (371)
Q Consensus 67 R~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~ 143 (371)
.+..++.+.+++.+ .....++|+|++|+|||||++.++.......+ . .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCch
Confidence 34455555555543 23578999999999999999999988721111 1 23333 34455555544432211
Q ss_pred CCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCC--ccccc--ccccccCCCCCCCcEEEEecCc
Q 043737 144 ESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWE--LVDLS--QVGLPVPCRTSASNKTVFTARE 203 (371)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~--~~~~~l~~~~~~~~~iliTsR~ 203 (371)
.. ... ..+. ++-+|||||++. ...+. .+...+......+..+|+||..
T Consensus 91 ----~~---~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----DT---KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----CS---HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----HH---HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 10 112 2222 455999999973 22221 1222221112246778888864
No 64
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.26 E-value=3.8e-07 Score=72.03 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=35.0
Q ss_pred CccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-.++|++..++++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3579999999998888754 344568899999999999999887665
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.19 E-value=5.4e-06 Score=74.24 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=44.1
Q ss_pred CccccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 62 PTVVGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.++.... ......+.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 45789999999988887642 135899999999999999999998872 2222345555544
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.19 E-value=1.9e-05 Score=74.56 Aligned_cols=172 Identities=14% Similarity=0.139 Sum_probs=95.0
Q ss_pred CccccchhHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.++.++++.+.+. . ...+-|.|+|++|+|||+||+.++... ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 458999887777665542 1 123468899999999999999999887 2222 33333221110
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc----------------ccccccccC-CCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD----------------LSQVGLPVP-CRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 192 (371)
+ ...........+.......+.+|+||+++.... +..+...+. ....
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 000111122223333346789999999975311 111111111 0112
Q ss_pred CCcEEEEecCchHHH-hh-cc---CCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 193 ASNKTVFTARELEVC-GQ-ME---AHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 193 ~~~~iliTsR~~~~~-~~-~~---~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.+..||.||...... .. .. -...+.++..+.++-.+++...+.......+.+ ...++..+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 345566566554321 11 11 123678888888888888887776544332222 455788888887
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.18 E-value=5.6e-06 Score=72.42 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|++..+.++.+.+.. .....|.|+|++|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4589999999888776653 334678899999999999999999886
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.13 E-value=1.7e-05 Score=70.92 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4589999999998888764 345678899999999999999998875
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.11 E-value=1e-05 Score=76.67 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHHHH---hcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCL---MEE--QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L---~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.++.++.+..++ ..+ ..+.+.++|++|+|||+||+.+++..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 367999998877655443 333 33679999999999999999999887
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.11 E-value=1.6e-05 Score=79.45 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=95.7
Q ss_pred ccccchhHHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 63 TVVGLQSTFDRVWRCLM----E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788887777776643 1 245689999999999999999999887 222 2334322
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc-------------ccccccccC-CCCCCCc
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD-------------LSQVGLPVP-CRTSASN 195 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~-~~~~~~~ 195 (371)
++. .. +.......+...+.......+++|+||+++.... ...+...+. .....+.
T Consensus 273 ~l~----sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 EIM----SK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HHH----SS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred Hhh----cc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 111 00 0111122222223333356789999999974311 111111111 0122233
Q ss_pred EEEEecCc-hHHHhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 196 KTVFTARE-LEVCGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 196 ~iliTsR~-~~~~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.||.||.. ..+...+ .-...++++.-+.++-.++|+..+.......+.+ ...|++.+.|+-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 44444443 3332221 1234678888888888888888775544333333 567778888864
No 71
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.09 E-value=7.7e-07 Score=70.72 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=31.5
Q ss_pred HHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 75 WRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 75 ~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
...+.+-....++|+|+.|+|||||++.++..... .. ..+++++..
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g-~~~~~~~~~ 73 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE--AG-KNAAYIDAA 73 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT--TT-CCEEEEETT
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh--cC-CcEEEEcHH
Confidence 33343324568999999999999999999988731 11 125666544
No 72
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.06 E-value=1.1e-05 Score=67.38 Aligned_cols=58 Identities=24% Similarity=0.095 Sum_probs=38.4
Q ss_pred Cccccch----hHHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe
Q 043737 62 PTVVGLQ----STFDRVWRCLMEE----QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA 122 (371)
Q Consensus 62 ~~~vGR~----~~~~~l~~~L~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 122 (371)
++|++.. ..++.+.+++... ..+.+.|+|++|+|||+||+.+++... .....++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 4566543 3445555665443 127899999999999999999999873 22234556544
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.06 E-value=0.00034 Score=61.44 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=89.4
Q ss_pred CCccccchhHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 61 PPTVVGLQSTFDRVWRCLME------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
-..++|.++...++.+.... .-.+-+.|+|++|+|||||++.++... . ...+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH-----
Confidence 45689988776666554321 112348999999999999999999886 2 123333221
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcc----------------cccccccccCCCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELV----------------DLSQVGLPVPCRT 191 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~~ 191 (371)
++. ... . ......+..+.+.. ...+.++++||++... .+..+...+....
T Consensus 108 -~~~----~~~-------~-~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 -DFV----EMF-------V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp -HHH----HST-------T-THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred -HHH----HHH-------h-hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 111 000 0 00111222223322 2456899999995321 0111111122011
Q ss_pred CCC-cEEEEecCchHH-----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 192 SAS-NKTVFTARELEV-----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 192 ~~~-~~iliTsR~~~~-----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
... ..++.+|..... .+...-...+.++..+.++-.+++...........+.. ...++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 122 233334444322 21112345688888888888888887765433222222 456777777765
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.99 E-value=0.00016 Score=62.58 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=87.9
Q ss_pred CccccchhHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 62 PTVVGLQSTFDRVWRCLM---E---------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
..++|.+....++.+... . .-.+-+.|+|++|+|||||++.++... . ...+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHH------
Confidence 568898876666544332 1 112348999999999999999999886 2 122333211
Q ss_pred HHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC-CCceEEEEeCCCCccc----------------ccccccccCCCCC
Q 043737 130 QIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS-NKKFVLLLDHIWELVD----------------LSQVGLPVPCRTS 192 (371)
Q Consensus 130 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 192 (371)
++. ... . .........+.+... ..+.++++||++.... ...+...+.....
T Consensus 84 ~~~----~~~-------~-~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DFV----EMF-------V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHH----HSC-------T-THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHH----HHH-------h-hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 111 100 0 001122233333332 4568999999953210 1111111110112
Q ss_pred CC-cEEEEecCchHHH-hhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 193 AS-NKTVFTARELEVC-GQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 193 ~~-~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
.. ..++.||...... ... .-...+.++..+.++-.++++..........+.. ...+++.+.|+-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 22 2333345443331 111 2234678888888888888887764433222222 455777777754
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.96 E-value=9.6e-05 Score=65.58 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++.+.|+|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999999998
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.92 E-value=0.00033 Score=66.53 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=91.2
Q ss_pred CCccccchhHHHHHHHHHh---cC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 61 PPTVVGLQSTFDRVWRCLM---EE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~---~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
-..++|.++.+.++.+... .. -.+-+.|+|++|+|||+||+.++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH-
Confidence 4678999887776655532 11 13458999999999999999999886 21 233444322110
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHhC----CCceEEEEeCCCCccc----------------ccccccccC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNMS----NKKFVLLLDHIWELVD----------------LSQVGLPVP 188 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~~----------------~~~~~~~l~ 188 (371)
.........+...++ ..+.++++|+++.... +..+...+.
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 000111122222222 2457999999964311 111111111
Q ss_pred C-CCCCCcEEEEecCchHHHh-h-c---cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 189 C-RTSASNKTVFTARELEVCG-Q-M---EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 189 ~-~~~~~~~iliTsR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
. .......++.+|....... . . .-...+.++..+.++-.+++...+.......+.. ...|+..+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 0 1122334444555543311 1 1 1234678888888888888887764432222222 456777888876
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.86 E-value=1.4e-05 Score=80.74 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=81.9
Q ss_pred CccccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHH
Q 043737 62 PTVVGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQ 132 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 132 (371)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ......+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45899999998888887631 113699999999999999999998872 222234555554321100
Q ss_pred HHHHHHhccCCCCCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCccc--ccccccccC----------CCCCCCcEEEEe
Q 043737 133 GSIAKKINLFNESWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWELVD--LSQVGLPVP----------CRTSASNKTVFT 200 (371)
Q Consensus 133 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~----------~~~~~~~~iliT 200 (371)
..........+. .....+|+||+++.... ...+...+. .....++.||+|
T Consensus 565 ---------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 ---------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000111111111 12345999999975421 111111110 012245678888
Q ss_pred cCc-----------------hHHHhhccCCCceeecCCChHHHHHHHHHHh
Q 043737 201 ARE-----------------LEVCGQMEAHKSFKVERLGYEDAWKLFEEKV 234 (371)
Q Consensus 201 sR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~ll~~~~ 234 (371)
|.. +.+... -...+.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 762 111121 12478899999988888876654
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.75 E-value=0.00062 Score=65.74 Aligned_cols=45 Identities=31% Similarity=0.345 Sum_probs=34.7
Q ss_pred ccccchhHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|-+...+.+.+.+.- .....+.|+|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 368887777766554321 245689999999999999999999887
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.75 E-value=0.00011 Score=74.47 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=92.5
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..++|.+..+++|.+++.. .....|.|+|++|+||||||+.++... ... .+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEchH----
Confidence 4589999999888887742 234689999999999999999998876 222 23333211
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHH-HHHHhCCCceEEEEeCCCCccc-------------ccccccccC-CCCCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQD-IVKNMSNKKFVLLLDHIWELVD-------------LSQVGLPVP-CRTSA 193 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~-~~~~~ 193 (371)
+. .. ........... +.......+.++++|+++.... ...+...+. .....
T Consensus 274 --l~-------~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 --IM-------SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp --HS-------SS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred --hh-------hh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 00 00 01111112222 2222234678999999963311 011111111 01223
Q ss_pred CcEEEEecCchH-HHhhc----cCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 043737 194 SNKTVFTARELE-VCGQM----EAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLP 260 (371)
Q Consensus 194 ~~~iliTsR~~~-~~~~~----~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 260 (371)
+..++.||.... +...+ .-...+.+...+.++-.+++.............. ..+++..+.|..
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 445555555432 21111 1123467788888888899887765444333323 344555566653
No 80
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.73 E-value=0.00018 Score=65.25 Aligned_cols=166 Identities=9% Similarity=-0.078 Sum_probs=98.9
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHH
Q 043737 74 VWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQE 153 (371)
Q Consensus 74 l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 153 (371)
+.+.+.+.-.+++.++|+.|.||++.+..+..... ...|+....+......++.++...+...
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------- 71 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQAM--------------- 71 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHHH---------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcCc---------------
Confidence 33444434567999999999999999999888752 1223211112233333444433332111
Q ss_pred HHHHHHHHhCCCceEEEEeCCCC-c--ccccccccccCCCCCCCcEEEEecCc-------hHHHhh-ccCCCceeecCCC
Q 043737 154 KSQDIVKNMSNKKFVLLLDHIWE-L--VDLSQVGLPVPCRTSASNKTVFTARE-------LEVCGQ-MEAHKSFKVERLG 222 (371)
Q Consensus 154 ~~~~l~~~l~~~~~LlVlDdv~~-~--~~~~~~~~~l~~~~~~~~~iliTsR~-------~~~~~~-~~~~~~~~l~~L~ 222 (371)
-+-+++-++|+|+++. . ...+.+...+. ....++.+|+++.. ..+... .+....++..+++
T Consensus 72 -------plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 72 -------SLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp -------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred -------CCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 1224456999999976 3 23344444444 33456666655432 123222 3455788999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCcHHHHHHH
Q 043737 223 YEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGLPLALITVG 267 (371)
Q Consensus 223 ~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~a 267 (371)
.++...++...+...+...+ .+.+..+++.++|....+....
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHHH
Confidence 99999999888754332222 3558889999999887766543
No 81
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=0.00017 Score=60.81 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc-----------cCCCCCCcCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN-----------LFNESWNSRS 150 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~-----------~~~~~~~~~~ 150 (371)
...++.|.|++|+|||||+.+++. . .-..++|++.....+...+.. +...++ .... .....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTP-SDFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECC-TTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEec-CCHHH
Confidence 456999999999999999999987 2 124688888766444444433 222222 1111 01112
Q ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCc
Q 043737 151 LQEKSQDIVKNMSNKKFVLLLDHIWEL 177 (371)
Q Consensus 151 ~~~~~~~l~~~l~~~~~LlVlDdv~~~ 177 (371)
.......+...+..++-++|+|.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 233455555555445779999998644
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.63 E-value=0.0021 Score=56.17 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=77.9
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..+.|-++..++|.+.+.. .-.+-+.|+|++|+|||||++.++... .. ..+.++...-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4567777777777654321 122349999999999999999999886 21 2344443221100
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCcccc-------------cccccccCC-CCCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVDL-------------SQVGLPVPC-RTSA 193 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~-------------~~~~~~l~~-~~~~ 193 (371)
........+..+.+.. ...++++++|+++..... ..+...+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111122222222 346789999999743110 011111110 1122
Q ss_pred CcEEEEecCchHHH-hhc----cCCCceeecCCChHHHHHHHHHHhC
Q 043737 194 SNKTVFTARELEVC-GQM----EAHKSFKVERLGYEDAWKLFEEKVG 235 (371)
Q Consensus 194 ~~~iliTsR~~~~~-~~~----~~~~~~~l~~L~~~ea~~ll~~~~~ 235 (371)
...++.+|....+. ... .-...+.++..+.++-.++++....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 33334445443331 111 2235678888888888889887764
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.60 E-value=0.00012 Score=74.80 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999998888877531 12589999999999999999999887
No 84
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.59 E-value=2.6e-05 Score=66.02 Aligned_cols=113 Identities=14% Similarity=-0.030 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
...+++++|+.|+||||++..++.+.. .+...++.+...... . ....+++.++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 457999999999999999999988872 222234444433321 1 2224455555433322233444555555554
Q ss_pred hCCC-ceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCch
Q 043737 162 MSNK-KFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 162 l~~~-~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
+.+. .-+||+|+++.. ..++.+.. +. ..+..|++|.+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LA---ENGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HH---HTTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HH---hCCCeEEEEeccc
Confidence 4444 449999999643 22222222 11 1367899998853
No 85
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.00025 Score=64.27 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|.|++|+|||||+.+++.... ..-..++|++.....+.. .+..++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999998862 122357888776655543 445555432211 234556666555
Q ss_pred HHHhC-CCceEEEEeCCCCc
Q 043737 159 VKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~~~ 177 (371)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 55543 45569999998543
No 86
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.53 E-value=6.5e-05 Score=61.77 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC---cCCHHHHHHHHHHHhccCCCC--CCc-------CC
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK---DLQLEQIQGSIAKKINLFNES--WNS-------RS 150 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~l~~~l~~~~~~--~~~-------~~ 150 (371)
...|.|++..|.||||+|.-.+-+. -.+--.+.++.+.. ..+...++..+.-.+...... +.. ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 4567777777799999999888776 23333566665443 223344444431000000000 111 11
Q ss_pred HHHHHHHHHHHhCCCce-EEEEeCCCC-----cccccccccccCCCCCCCcEEEEecCch
Q 043737 151 LQEKSQDIVKNMSNKKF-VLLLDHIWE-----LVDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 151 ~~~~~~~l~~~l~~~~~-LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
........++.+.+.+| |||||++-. ....+.+...+. ....+..||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 12334555566665555 999999842 233333333343 444677899999984
No 87
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.50 E-value=0.00041 Score=63.00 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++.|.|++|+||||||.+++.... ..-..++|++.....+.. .+..++...... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456999999999999999999987762 122468888887655432 244555332111 223455555555
Q ss_pred HHHhC-CCceEEEEeCCCCc
Q 043737 159 VKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~~~ 177 (371)
..... .+.-+||+|.+...
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGC
T ss_pred HHHHhcCCCCEEEEcChHhh
Confidence 55544 35669999998543
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.49 E-value=9.7e-05 Score=65.57 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe--CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA--SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
.+++.|+|++|+|||+||.+++... . ..++|++. ... +.. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~---G---~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL---G---GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH---H---TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC---C---CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHH
Confidence 4578899999999999999998762 1 12455555 221 100 01345566666666
Q ss_pred HhCCCceEEEEeCCCCc
Q 043737 161 NMSNKKFVLLLDHIWEL 177 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~ 177 (371)
.+...+ ++|+|++...
T Consensus 179 ~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHCS-EEEEECCTTT
T ss_pred HHhhCC-EEEEeccccc
Confidence 665556 9999999643
No 89
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.48 E-value=0.00042 Score=61.32 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHH-HHHHH
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEK-SQDIV 159 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~-~~~l~ 159 (371)
.++.|.|++|+|||||+.+++.... ....-..++|++........ .++.++...... ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 3789999999999999999988762 11113478999887766543 366666543321 23344554 33333
Q ss_pred HH--h-CCCceEEEEeCCCCc
Q 043737 160 KN--M-SNKKFVLLLDHIWEL 177 (371)
Q Consensus 160 ~~--l-~~~~~LlVlDdv~~~ 177 (371)
.. + .+++-++|+|.+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 32 3 346789999999654
No 90
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.47 E-value=0.00015 Score=73.27 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEE---------QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 55899999998888877531 22479999999999999999999887
No 91
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.45 E-value=0.00052 Score=62.60 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC---CCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES---WNSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~l 158 (371)
...++.|.|++|+|||+||.+++..... .-..++|++.....+.. .+..++..... ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4468999999999999999999887621 22368899887655433 24445443211 0223556666666
Q ss_pred HHHhCC-CceEEEEeCCCCc
Q 043737 159 VKNMSN-KKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~~-~~~LlVlDdv~~~ 177 (371)
....+. ..-+||+|.+...
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTC
T ss_pred HHHHhcCCCCEEEEeChHHh
Confidence 655543 4569999998543
No 92
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=0.00048 Score=58.91 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC----C---CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE----S---WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----~---~~~~~~ 151 (371)
...++.|.|++|+|||||+..++....... ..-..++|++.........+. .++..++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 446999999999999999999988631100 023578888876644443332 33344433210 0 011222
Q ss_pred HH---HHHHHHHHhC-CCceEEEEeCCCCc
Q 043737 152 QE---KSQDIVKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 152 ~~---~~~~l~~~l~-~~~~LlVlDdv~~~ 177 (371)
.+ ....+.+.+. .++-++|+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 22 2333444443 46679999998543
No 93
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.40 E-value=0.00099 Score=60.39 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCC----------CCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQGSIAKKINLFNE----------SWNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----------~~~~ 148 (371)
...++.|+|++|+|||+||.+++....... ..-..++|++.....+...+.. ++..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999988741110 1234789998877655555443 3344433210 0011
Q ss_pred CCHHHHHHHHHHHhC---CCceEEEEeCCCC
Q 043737 149 RSLQEKSQDIVKNMS---NKKFVLLLDHIWE 176 (371)
Q Consensus 149 ~~~~~~~~~l~~~l~---~~~~LlVlDdv~~ 176 (371)
....+.+..+...+. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 122233333444443 4456899998853
No 94
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.40 E-value=0.0006 Score=61.33 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---CCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---NDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~ 151 (371)
...++.|+|++|+|||+||.+++....... ..-..++|++.....+...+.. ++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999988752110 1134789998877655555543 34445432110 011222
Q ss_pred H---HHHHHHHHHhC--CCceEEEEeCCCC
Q 043737 152 Q---EKSQDIVKNMS--NKKFVLLLDHIWE 176 (371)
Q Consensus 152 ~---~~~~~l~~~l~--~~~~LlVlDdv~~ 176 (371)
+ +.+..+...+. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 23444444443 4566999999853
No 95
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.0005 Score=62.52 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++.|.|++|+||||||.+++..... .-..++|++.....+.. .+..++...... ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4569999999999999999999887621 22368899887655533 234454332111 122344444444
Q ss_pred HHHhC-CCceEEEEeCCCC
Q 043737 159 VKNMS-NKKFVLLLDHIWE 176 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~~ 176 (371)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 43332 4456999999853
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.31 E-value=0.0002 Score=63.89 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 67 LQSTFDRVWRCLMEE---QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 67 R~~~~~~l~~~L~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...++.+.+++..- ....+.|+|++|+|||+||..+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555666542 25789999999999999999999887
No 97
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.26 E-value=0.0009 Score=60.09 Aligned_cols=93 Identities=11% Similarity=0.141 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCC---------CCC----CeEEEEEeCCcCCHHHHHHHHHHHhccCCC----
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTP---------NDF----DFVIWVVASKDLQLEQIQGSIAKKINLFNE---- 144 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~---- 144 (371)
...++.|+|++|+|||+||.+++....... ..- ..++|++.....+...+.. ++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999987631000 111 4788998877655555553 3444443211
Q ss_pred C---CCcCCHH---HHHHHHHHHhCC--CceEEEEeCCC
Q 043737 145 S---WNSRSLQ---EKSQDIVKNMSN--KKFVLLLDHIW 175 (371)
Q Consensus 145 ~---~~~~~~~---~~~~~l~~~l~~--~~~LlVlDdv~ 175 (371)
. ....+.+ +....+...+.. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 0112222 234444454443 45699999985
No 98
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.24 E-value=0.002 Score=64.58 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=77.5
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..+.|-++..++|.+.+.- ...+-|.++|++|+|||.||+.++... .. -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----
Confidence 4567777777777665431 134568899999999999999999997 22 2333321
Q ss_pred HHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh-CCCceEEEEeCCCCccc----------------ccccccccCCCC
Q 043737 129 EQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM-SNKKFVLLLDHIWELVD----------------LSQVGLPVPCRT 191 (371)
Q Consensus 129 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~ 191 (371)
.+++ ... ...+ +..+..+.+.. +..+++|+||+++.... +..+...+....
T Consensus 545 ~~l~----s~~-------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PELL----TMW-------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHHH----TTT-------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chhh----ccc-------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1221 111 2222 23344444443 45789999999974311 111111111111
Q ss_pred CCCcEEEE-ec-CchHH----HhhccCCCceeecCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 043737 192 SASNKTVF-TA-RELEV----CGQMEAHKSFKVERLGYEDAWKLFEEKVGKEILDSHPDIPELAETVAKECGGL 259 (371)
Q Consensus 192 ~~~~~ili-Ts-R~~~~----~~~~~~~~~~~l~~L~~~ea~~ll~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 259 (371)
.....++| || |...+ .+...-...+.++.-+.++-.++|+..+.......+-+ ...|++.+.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 22223344 33 33322 21112245677766666666677776665443222222 45566666664
No 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.19 E-value=0.00028 Score=63.62 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++|++..++.+...+..+ ..+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999998888654 478899999999999999999887
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.16 E-value=0.0012 Score=55.90 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---------------
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW--------------- 146 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~--------------- 146 (371)
...+++|.|++|+|||||+..++.... ..-..++|+.... ....+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 346899999999999999999987652 1122466766543 3344433332 333211100
Q ss_pred ------CcCCHHHHHHHHHHHhC-CCce--EEEEeCCCCcc--c---ccccccccC-CCCCCCcEEEEecCch
Q 043737 147 ------NSRSLQEKSQDIVKNMS-NKKF--VLLLDHIWELV--D---LSQVGLPVP-CRTSASNKTVFTAREL 204 (371)
Q Consensus 147 ------~~~~~~~~~~~l~~~l~-~~~~--LlVlDdv~~~~--~---~~~~~~~l~-~~~~~~~~iliTsR~~ 204 (371)
...+..+....+...+. .++- ++|+|+..... + ...+...+. .....+..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11244555555544442 2344 99999986332 1 111111111 0123467788887654
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00051 Score=57.13 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 66 GLQSTFDRVWRCLME---EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 66 GR~~~~~~l~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|++.++.|.+.+.. ....+|+|.|+.|+|||||++.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677888877764 345799999999999999999998876
No 102
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.07 E-value=0.003 Score=58.78 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
..+|.++|++|+||||++..++..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998873
No 103
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.07 E-value=0.0025 Score=56.93 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
...++.|.|.+|+||||||.+++..... .+ ..++|++... +..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECCC--CHHHHHHHHHH
Confidence 4569999999999999999999877632 12 5688887653 44555554443
No 104
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.02 E-value=0.00061 Score=64.80 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.++|++..++.+...+..+ ..|.|+|++|+|||+||+.++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 45799999999888887654 488999999999999999999887
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00047 Score=55.93 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|.|+|++|+||||+++.+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999987
No 106
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.92 E-value=0.0004 Score=63.02 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+.....+...+.......+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998866655444433334459999999999999999999876
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.91 E-value=4.8e-05 Score=62.55 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++++|+.|+||||++.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999998887765
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.0052 Score=51.82 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC--C-CCCCeEEEEEeCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT--P-NDFDFVIWVVASKD 125 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~-~~f~~~~wv~~~~~ 125 (371)
...+++|.|++|+|||||++.++...... . .....++|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 45699999999999999999998754110 0 12346888876543
No 109
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.86 E-value=0.00042 Score=56.80 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|.|+|+||+|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998876
No 110
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.85 E-value=0.00048 Score=62.55 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
.++.+.. .....++|+|++|+|||||++.+++...+....+ .++++-++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v-~~I~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLIDER 215 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS-EEEEEEESSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe-eEEEEEecCC
Confidence 3444443 3456899999999999999999887652112222 3445666654
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00063 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|++|+||||+++.++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.82 E-value=0.00098 Score=55.72 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 69 STFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 69 ~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.+++|.+.+.. ....+|+|.|+.|+|||||++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566665543 356799999999999999999998877
No 113
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.82 E-value=0.0012 Score=60.33 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=37.2
Q ss_pred ccccchhHHHHHHHHHhc---------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 63 TVVGLQSTFDRVWRCLME---------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 63 ~~vGR~~~~~~l~~~L~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|.+..++.+..++.. ...+.+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999988887731 134678999999999999999999887
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.0054 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|.++|++|+||||++..++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999887
No 115
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.77 E-value=0.0076 Score=56.35 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC----CCCCc
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN----ESWNS 148 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~~~~ 148 (371)
++.|.. .+...++|+|++|+|||||+..++.... ......+++..++... ...++..++...=.... -....
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~ 219 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN 219 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC
Confidence 444433 2334688999999999999999987752 1122345666666544 34455555543200000 00011
Q ss_pred CCHHHHH------HHHHHH---hCCCceEEEEeCCCC
Q 043737 149 RSLQEKS------QDIVKN---MSNKKFVLLLDHIWE 176 (371)
Q Consensus 149 ~~~~~~~------~~l~~~---l~~~~~LlVlDdv~~ 176 (371)
..+.... -.+.++ .+++.+|+++||+..
T Consensus 220 d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 220 EPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 2222111 122222 258899999999953
No 116
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.77 E-value=0.0047 Score=51.44 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHH-------hccCCCCCCcCCHHHHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKK-------INLFNESWNSRSLQEKSQD 157 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~~~~~~~~~ 157 (371)
+|+|.|++|+||+|.|+.+++++ ++..++. -+++++-+.. .......-.-...+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~--------g~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK--------GFVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--------CCEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------CCeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 67899999999999999999887 2334433 2333322111 0000000022334455666
Q ss_pred HHHHhCCCceEEEEeCCCC
Q 043737 158 IVKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 158 l~~~l~~~~~LlVlDdv~~ 176 (371)
+.+.+..... +|||.+-.
T Consensus 68 v~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHHCCSSSC-EEEESCCC
T ss_pred HHHhhccCCc-eEecCCch
Confidence 7777765554 78899853
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.76 E-value=0.0064 Score=56.05 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCC---CCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCC-------CCcCCH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHT---PNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNES-------WNSRSL 151 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~ 151 (371)
...++.|.|++|+|||||+.+++-..... ......++|++.........+ ..++..++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 44699999999999999999876443110 112346888887665444433 3355555432110 011122
Q ss_pred H---HHHHHHHHHhC-CCceEEEEeCCC
Q 043737 152 Q---EKSQDIVKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 152 ~---~~~~~l~~~l~-~~~~LlVlDdv~ 175 (371)
. +....+...+. .+.-++|+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 22233333332 356799999974
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.0046 Score=54.91 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCC-CCCcCCHHHH-HHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNE-SWNSRSLQEK-SQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-~~~l 158 (371)
...++.|+|++|+||||++..++..+. ..-..+.++...... ...+-+..++...+...- .....++... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 346899999999999999999998873 122345666554321 122223344555443211 1122333333 2334
Q ss_pred HHHhCCCceEEEEeCCC
Q 043737 159 VKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~~~~~LlVlDdv~ 175 (371)
...+..+.-++|+|..-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44344455588999764
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.73 E-value=0.0049 Score=55.87 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCC---CCeEEEEEeCCcCCHHHHHHHHHHHhccCCC----------CCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPND---FDFVIWVVASKDLQLEQIQGSIAKKINLFNE----------SWNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----------~~~~ 148 (371)
...++.|+|++|+|||||+.+++......... -..++|++.........+ ..+....+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999998875111111 124588877554333332 233333322110 0011
Q ss_pred CCHHHHHHHHHHHhC------CCceEEEEeCCCCc
Q 043737 149 RSLQEKSQDIVKNMS------NKKFVLLLDHIWEL 177 (371)
Q Consensus 149 ~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~ 177 (371)
....+.+..+...+. .++-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233444444443 35679999998643
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.73 E-value=0.0037 Score=56.16 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
...++.|.|.+|+||||||.+++..... .-..++|++..- +..++...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHH
Confidence 4469999999999999999999988732 234677776543 344444444
No 121
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.73 E-value=0.0015 Score=59.92 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHHHhc------------------------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME------------------------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~------------------------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+...+.|..++.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578998888888776620 123578999999999999999999887
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.00089 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 554
No 123
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.70 E-value=0.0065 Score=53.69 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+++|+|++|+||||++..++..+.... -..+..+..... ....+.+.......+.... ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 456999999999999999999988773111 124566655432 2333334444444443221 1123333333333
Q ss_pred HhCCCceEEEEeCC
Q 043737 161 NMSNKKFVLLLDHI 174 (371)
Q Consensus 161 ~l~~~~~LlVlDdv 174 (371)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 33458889943
No 124
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
.+|+|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.67 E-value=0.0045 Score=67.53 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+.+.|+|++|+|||+||.+++.... ..-..+.|+++....+... +..++...... .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988862 2334678887776655444 44444221111 122334455555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 043737 159 VKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~ 175 (371)
....+ .+..+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 567799999995
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.66 E-value=0.001 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.|+|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999999887
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.0011 Score=55.05 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999887
No 128
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.65 E-value=0.0021 Score=54.21 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 68 QSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 68 ~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++..+.+...+.......|+|.|.+|+|||||+..++...
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555667889999999999999999999886
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.64 E-value=0.0012 Score=53.81 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998865
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.0017 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|++|+|||||++.++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 131
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.63 E-value=0.02 Score=53.52 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=44.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHH
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKK 138 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~ 138 (371)
.++.|.. .+...++|.|.+|+|||+|+.++++... +.+.+.++++-++... ...++.+++...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555543 3456899999999999999999998752 3344667777776654 456666666654
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.63 E-value=0.0013 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.61 E-value=0.0013 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|++|+|||||++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998763
No 134
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.61 E-value=0.0012 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|++|+||||+++.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0022 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+|+.+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998876
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.58 E-value=0.0011 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|+|++|+|||||++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 137
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.56 E-value=0.0064 Score=53.74 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCCCC-CCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFNES-WNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 160 (371)
..++++.|++|+||||++..++..+. ..-..+.++...... ...+.+..+....+...-. ....++........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56899999999999999999998873 222356666665332 2333344445554442111 123455555544555
Q ss_pred HhC-CCceEEEEeCCC
Q 043737 161 NMS-NKKFVLLLDHIW 175 (371)
Q Consensus 161 ~l~-~~~~LlVlDdv~ 175 (371)
.++ ...=++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 553 333388888763
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.56 E-value=0.0015 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|+|+.|+|||||++.++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 139
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.0066 Score=57.03 Aligned_cols=52 Identities=12% Similarity=-0.084 Sum_probs=36.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAK 137 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~ 137 (371)
...++.|.|.+|+|||+||.+++..... ..-..++|++... +...+...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHH
Confidence 4469999999999999999999888631 1123577776653 45566655543
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.55 E-value=0.0013 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|++|+||||+++.++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 141
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.54 E-value=0.017 Score=51.47 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=36.1
Q ss_pred ccchhHHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 65 VGLQSTFDRVWRCLMEE----QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
+|-...+..+...+... ...+|+|.|+.|+|||||++.+...+. ....-..+..+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~-~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS-RWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT-TSTTCCCEEEEEGGG
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc-ccCCCCeEEEEeecc
Confidence 44444444444444332 345899999999999999999887762 111122355555544
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.0011 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998886
No 143
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.0015 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+++.++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 144
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.52 E-value=0.0041 Score=51.76 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 145
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.51 E-value=0.011 Score=52.87 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK-DLQLEQIQGSIAKKIN 140 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~l~~~l~ 140 (371)
...+++|+|+.|+||||+++.++.... ..-..+.+..... .....+.+......++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 457999999999999999999988773 1222345544332 2233444555555555
No 146
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.51 E-value=0.0024 Score=52.75 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 68 QSTFDRVWRCLMEE-QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 68 ~~~~~~l~~~L~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-+..+..++..- ..+.+.|+|++|+|||++|..+++.+
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456666666432 23479999999999999999999887
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.51 E-value=0.0013 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|+|.|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.51 E-value=0.0084 Score=56.48 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSI 135 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l 135 (371)
...++.|.|++|+|||||+.+++...... .-..++|++... +...+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHH
Confidence 44699999999999999999998886311 122577777543 334444443
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.49 E-value=0.0013 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.|+|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 150
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.49 E-value=0.0016 Score=54.03 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998776
No 151
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.49 E-value=0.0031 Score=54.11 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 68 QSTFDRVWRCLME--EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 68 ~~~~~~l~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+.++...... .....|+|.|++|+||||+|+.+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444433322 356789999999999999999998876
No 152
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.49 E-value=0.0093 Score=55.33 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
..++.++|++|+||||++..++..+. ..-..+..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc
Confidence 56899999999999999999998873 222345555553
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.49 E-value=0.015 Score=51.33 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
...+++|.|++|+|||||+..++...... .-..++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 45699999999999999999998876311 11146666543
No 154
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0026 Score=53.45 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 67 LQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 67 R~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++..+.+...+.....+.|+|.|.+|+|||||+..++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555545577899999999999999999999886
No 155
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.48 E-value=0.015 Score=55.45 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
...++.|.|++|+|||+||.+++.... ..+-..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHH
Confidence 345899999999999999999998873 11123577877654 3455555443
No 156
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.47 E-value=0.002 Score=58.59 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhc-cCCCCCCcCCHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKIN-LFNESWNSRSLQEKSQDIV 159 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~l~ 159 (371)
....+++|.|+.|+|||||.+.++..... ..-..++.+.-........ ... ..... ...........+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~--~~~~~i~t~ed~~e~~~~~-------~~~~v~q~~-~~~~~~~~~~~La 190 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN--TKYHHILTIEDPIEFVHES-------KKCLVNQRE-VHRDTLGFSEALR 190 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCC-------SSSEEEEEE-BTTTBSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC--CCCcEEEEccCcHHhhhhc-------cccceeeee-eccccCCHHHHHH
Confidence 44569999999999999999998877621 1112233222111110000 000 00000 0011112334677
Q ss_pred HHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchHHH
Q 043737 160 KNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELEVC 207 (371)
Q Consensus 160 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~~~ 207 (371)
..|...+=+|++|+.-+.+..+.+... ...|..+++|+......
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHH----HhcCCEEEEEEccChHH
Confidence 777788889999999765554433222 12356688888765443
No 157
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0016 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++++|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999886
No 158
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0018 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.42 E-value=0.0018 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 160
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.41 E-value=0.0025 Score=59.36 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME--------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.++..+.|..++.. ...+.+.++|++|+|||++|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679988888888766632 134679999999999999999999887
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.40 E-value=0.0022 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998775
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.39 E-value=0.0023 Score=53.01 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.38 E-value=0.0038 Score=55.03 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|+.|+|||||++.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999988876
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.38 E-value=0.0021 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.0016 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+|.|++|+||||+|+.++..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 166
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.37 E-value=0.01 Score=52.34 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCC-HHHHHHHHHHHhccCCCC-CCcCCHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQ-LEQIQGSIAKKINLFNES-WNSRSLQEKSQDIVK 160 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~ 160 (371)
..+++|+|++|+||||++..++..+. ..-..+.++....... ....+..+....+...-. ....++.+.......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999998873 2223466666543221 112233344444432211 012344454443333
Q ss_pred Hh-CCCceEEEEeCC
Q 043737 161 NM-SNKKFVLLLDHI 174 (371)
Q Consensus 161 ~l-~~~~~LlVlDdv 174 (371)
.+ ....=++|+|.-
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 234458889976
No 167
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.37 E-value=0.0041 Score=56.03 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHh----cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 65 VGLQSTFDRVWRCLM----EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 65 vGR~~~~~~l~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
|+-+...+++++.+. .+....++|.|++|+||||+++.++..+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666666653 3455679999999999999999988876
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.37 E-value=0.0022 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998765
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.36 E-value=0.0023 Score=52.86 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++++|+|+.|+|||||++.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998775
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.36 E-value=0.0017 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++++|.|+.|+|||||++.++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998775
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+|+.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 172
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.35 E-value=0.0023 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.34 E-value=0.0023 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|+|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999887
No 174
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.33 E-value=0.019 Score=53.54 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
..++|.++|.+|+||||++..++..+.. . +-..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~-~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE-K-HKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH-T-SCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-h-cCCeEEEEecCC
Confidence 3578999999999999999999988732 1 123456666543
No 175
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.33 E-value=0.0021 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|+.|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 176
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0016 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|+|.|++|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999886
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.31 E-value=0.0025 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|++|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998775
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0015 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998886
No 179
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.30 E-value=0.0032 Score=54.29 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|.|.|++|+||||+|+.+...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999886
No 180
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.30 E-value=0.015 Score=54.46 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=61.4
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccCC------C--
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLFN------E-- 144 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~~------~-- 144 (371)
++.|.. .+...++|.|.+|+|||+|+.++++... +.+.+.++++-++... ...++.+++...=.... .
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 455543 3456899999999999999999998752 3445677888777654 46677777765311110 0
Q ss_pred ---CCCcCCHH------HHHHHHHHHh---CCCceEEEEeCCCC
Q 043737 145 ---SWNSRSLQ------EKSQDIVKNM---SNKKFVLLLDHIWE 176 (371)
Q Consensus 145 ---~~~~~~~~------~~~~~l~~~l---~~~~~LlVlDdv~~ 176 (371)
......+. ...-.+.+++ +++.+|+++||+.+
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00112222 2223334444 35789999999853
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.27 E-value=0.0019 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++|+|.|++|+||||+|+.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0026 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 183
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.26 E-value=0.0024 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.0026 Score=53.08 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.23 E-value=0.0029 Score=54.84 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 186
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.23 E-value=0.0027 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|++|+||||+|+.++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.22 E-value=0.0029 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.+++|.|+.|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 188
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.22 E-value=0.0084 Score=58.64 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45899999998888887554 589999999999999999999887
No 189
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.21 E-value=0.011 Score=55.45 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...++.|.|.+|+|||+||.+++...... -..++|++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC
Confidence 44699999999999999999999887322 23677776543
No 190
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.20 E-value=0.0028 Score=52.90 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+++.+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 191
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.19 E-value=0.0061 Score=50.03 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 192
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0035 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.+..+|+|.|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999764
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.19 E-value=0.0032 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|+.|+|||||++.++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 194
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.19 E-value=0.0029 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|++|+||||+++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 195
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.18 E-value=0.0092 Score=53.32 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...+++|+|++|+||||++..++..+. ..-..+.++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCC
Confidence 356899999999999999999998873 2223466665543
No 196
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.18 E-value=0.0029 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|.|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 197
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.17 E-value=0.0029 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 198
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0029 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 199
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.16 E-value=0.0034 Score=54.09 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998876
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.16 E-value=0.0029 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998775
No 201
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.16 E-value=0.0033 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.16 E-value=0.0036 Score=52.06 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0024 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.13 E-value=0.04 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|+|.+|+||||++..++..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999877
No 205
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.12 E-value=0.0033 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999887
No 206
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.11 E-value=0.0031 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 207
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.11 E-value=0.0033 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999999776
No 208
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.10 E-value=0.0034 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 209
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.08 E-value=0.0032 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQI 103 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~ 103 (371)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999953
No 210
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.07 E-value=0.0031 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999887
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.06 E-value=0.0035 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
.+|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999987
No 212
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.06 E-value=0.0096 Score=53.53 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=37.1
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 78 LMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 78 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
+.+...+++++.|-||+||||+|..++..+. ..-..++-++.....+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhHH
Confidence 3345578999999999999999999998883 23346777777755544433
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.04 E-value=0.017 Score=63.16 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+..++...... ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 456999999999999999999998873 222468888877665543 145565432221 234556665555
Q ss_pred HHHhC-CCceEEEEeCCCCc
Q 043737 159 VKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~~~ 177 (371)
..... ...-++|+|.+...
T Consensus 454 ~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHhcCCcEEEECCHHHh
Confidence 54432 45669999998643
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.01 E-value=0.004 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 215
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.00 E-value=0.027 Score=49.95 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
....+|+|.|+.|+|||||++.+..... ....-..+.+++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~-~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS-RWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT-TSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hCCCCCeEEEEecCC
Confidence 3457999999999999999999988761 001122355555544
No 216
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.96 E-value=0.0045 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++.|.|+.|+|||||+..++..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999887
No 217
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.0022 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998886
No 218
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.95 E-value=0.015 Score=62.71 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..+++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+..++...... ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 457999999999999999999988873 223468888877665543 245555432221 233455555555
Q ss_pred HHHhC-CCceEEEEeCCCCc
Q 043737 159 VKNMS-NKKFVLLLDHIWEL 177 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~~~ 177 (371)
..... .+.-++|+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 54442 45669999998644
No 219
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.94 E-value=0.009 Score=54.02 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=35.8
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 78 LMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 78 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
+.+...+++++.|-||+||||+|..++..+... ..-..++-++.....+...
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCChHH
Confidence 334556899999999999999999998887300 2333577777765444333
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.93 E-value=0.013 Score=63.27 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCC---CcCCHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESW---NSRSLQEKSQDI 158 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~l 158 (371)
..++|-|+|+.|+||||||.+++... +..-...+|+.+.+..+..- +..++...... ....-++.+..+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34799999999999999999999776 33445788888877665542 66776654432 233446666666
Q ss_pred HHHhC-CCceEEEEeCCC
Q 043737 159 VKNMS-NKKFVLLLDHIW 175 (371)
Q Consensus 159 ~~~l~-~~~~LlVlDdv~ 175 (371)
...++ +..-++|+|-|.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 66665 455699999984
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.92 E-value=0.0048 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999998876
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.92 E-value=0.005 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|+.|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999776
No 223
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.91 E-value=0.0032 Score=57.13 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 72 DRVWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 72 ~~l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
-++++.+.. .....++|.|.+|+|||+|+.++++........+ .++++-++..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv-~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDT-IRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTS-EEEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCe-EEEEEEeccC
Confidence 345666654 4456889999999999999999888752111222 2345555543
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.90 E-value=0.0048 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45699999999999999999998776
No 225
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.89 E-value=0.0056 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|+.|+|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355699999999999999999988765
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.89 E-value=0.0086 Score=49.95 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|+.|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998876
No 227
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.88 E-value=0.0042 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|+|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.87 E-value=0.0056 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 229
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.87 E-value=0.0076 Score=53.52 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
...++|+|+|-||+||||+|..++..+.+ .-..++-+++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCC
Confidence 45688888899999999999999988842 2235777776643
No 230
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.86 E-value=0.0057 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|.||.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0052 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|+|+.|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998875
No 232
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.85 E-value=0.0071 Score=50.33 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
...+.+++|+-|.||||.+...+.+.. ..... ++.+...... ..-...+.+.++...+.....+.. .+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~k-Vli~k~~~d~--R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQH-AIVFKPCIDN--RYSEEDVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCC-EEEEECC-------------------CCEEECSSGG----GGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCE-EEEEEeccCC--cchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence 456889999999999999999888872 22233 3333322211 111223444444332211111111 22333
Q ss_pred hCCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCchH
Q 043737 162 MSNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTARELE 205 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~~ 205 (371)
+.+.--+|++|++.-. +.++.+.... ..+..|++|.++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~----~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLA----NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHH----HTTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHh----hCCCEEEEEecccc
Confidence 3333349999998643 3333232211 23778999998643
No 233
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0065 Score=51.78 Aligned_cols=40 Identities=25% Similarity=0.116 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...++.|.|++|+|||||+.+++.... ..-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 346999999999999999998877652 1223677877554
No 234
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.82 E-value=0.017 Score=52.46 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 71 FDRVWRCLM--EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 71 ~~~l~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++...+. .....+|+|+|.+|+|||||+..++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 2456799999999999999999998876
No 235
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.80 E-value=0.0085 Score=53.40 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
++.++|+|+|-|||||||.+..++.-+. ..-..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 5679999999999999999999888873 2223577777764
No 236
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.80 E-value=0.006 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|+|.|+.|+|||||+..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999887
No 237
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.80 E-value=0.0047 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|++|+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 238
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.80 E-value=0.013 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|++|+||||+++.+.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.037 Score=52.10 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|+|+.|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999998876
No 240
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.78 E-value=0.0071 Score=48.02 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455699999999999999999998875
No 241
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.043 Score=46.45 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCC--CeEEEEEeCCcCCHHHHHHHHHHHhccCCC-----
Q 043737 72 DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDF--DFVIWVVASKDLQLEQIQGSIAKKINLFNE----- 144 (371)
Q Consensus 72 ~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~----- 144 (371)
+++...+.++ +.+.|.|+.|+||||+...+.-+........ ..++++. .......++...+...++....
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~-p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQ-PRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEE-SSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEec-cchHHHHHHHHHHHHHhccccCceEEE
Confidence 3444444333 5899999999999987665543321111111 1333332 2222233444444444332110
Q ss_pred -------------CCCcCCHHHHHHHHHHHhCCCceEEEEeCCCCc
Q 043737 145 -------------SWNSRSLQEKSQDIVKNMSNKKFVLLLDHIWEL 177 (371)
Q Consensus 145 -------------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 177 (371)
.....+++.+...+...+.+- -+||+|+++..
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 001235566666665544333 38999999864
No 242
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.76 E-value=0.01 Score=56.36 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=34.6
Q ss_pred CccccchhHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLM--EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..+.|.+..+.+.+... .....+|++.|++|+||||+++.+++++
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 344556665556666552 2355789999999999999999999998
No 243
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.75 E-value=0.006 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999887
No 244
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.75 E-value=0.0061 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|+|+.|+|||||+..++..+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999887
No 245
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.74 E-value=0.0067 Score=54.01 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeC
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVAS 123 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 123 (371)
....+|+|.|+.|+|||||++.+..-.....+. ..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecC
Confidence 345799999999999999999998876321111 235555544
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.72 E-value=0.0066 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|++|+||||+|+.+++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999887
No 247
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.72 E-value=0.0029 Score=52.00 Aligned_cols=110 Identities=9% Similarity=0.082 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKN 161 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 161 (371)
..++.+++|+.|+||||.+...+++.. .......++ ...... ..-...+.+.++...+.....+.. .+.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~-k~~~d~--r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~ 77 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVF-KPEIDN--RYSKEDVVSHMGEKEQAVAIKNSR----EILKY 77 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEE-EEC---------CEEECTTSCEEECEEESSST----HHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEE-EeccCc--cchHHHHHhhcCCceeeEeeCCHH----HHHHH
Confidence 346899999999999999999888872 223333333 221110 101112223333211111111111 33444
Q ss_pred hCCCceEEEEeCCCCc--ccccccccccCCCCCCCcEEEEecCch
Q 043737 162 MSNKKFVLLLDHIWEL--VDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 162 l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
+.+.-=+|++|++... ..++.+.... ..+..||+|.++.
T Consensus 78 ~~~~~dvViIDEaqfl~~~~v~~l~~l~----~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQFFDDEIVEIVNKIA----ESGRRVICAGLDM 118 (191)
T ss_dssp CCTTCSEEEECSGGGSCTHHHHHHHHHH----HTTCEEEEEECSB
T ss_pred HhccCCEEEEECCCCCCHHHHHHHHHHH----hCCCEEEEEeccc
Confidence 4433349999998643 2233332211 2367899988854
No 248
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.006 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 249
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.69 E-value=0.0077 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 250
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.69 E-value=0.0061 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 251
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.68 E-value=0.0064 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+||||+++.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999887
No 252
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.68 E-value=0.0064 Score=49.93 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+.|.|.|++|+||||||.+++.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678999999999999999998775
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.67 E-value=0.0072 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++++|.|+.|+|||+||..+++.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999886
No 254
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.65 E-value=0.012 Score=55.55 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 68 QSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 68 ~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
...+..+...+.+.. +.+.|.|++|+|||+++..++..+.
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 344455555554433 4999999999999999999988873
No 255
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.0038 Score=60.85 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=35.6
Q ss_pred CCccccchhHHHHHHHHHhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 61 PPTVVGLQSTFDRVWRCLMEEQMG-----------IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 61 ~~~~vGR~~~~~~l~~~L~~~~~~-----------~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.++|.+.....+.-.+..+..+ .|.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 466899988766665555443222 68999999999999999998776
No 256
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.65 E-value=0.009 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|+|+.|+|||||+..++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999999887
No 257
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.64 E-value=0.0074 Score=49.96 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 67 LQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 67 R~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+....+.+.+...+...-.|+|.|.+|+|||||+..+....
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33334444444434455678999999999999999998654
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.63 E-value=0.0067 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.194 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446999999999999999999883
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.62 E-value=0.0073 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++++|.|+.|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998876
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.60 E-value=0.007 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+|+|.|+.|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 261
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.58 E-value=0.0048 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=16.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH-hhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQIN-KKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~-~~~ 107 (371)
...+++|.|+.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 554
No 262
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.56 E-value=0.0083 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQIN 104 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~ 104 (371)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 263
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.55 E-value=0.016 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.+.|+|++|+||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4699999999999999998877665
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.54 E-value=0.014 Score=49.05 Aligned_cols=38 Identities=26% Similarity=0.055 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
-.|++.|.||+||||++..++..+. ...+ .+.++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~-~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGV-RVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTC-CEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCC-CEEEEEeCC
Confidence 3588999999999999999988873 2222 355555544
No 265
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.54 E-value=0.024 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
...|+|.|+.|+||||++..+.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999883
No 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.53 E-value=0.019 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+++.|+|++|+||||++..++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 267
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.50 E-value=0.011 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.138 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988765
No 268
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0069 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|+.|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999877
No 269
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.45 E-value=0.022 Score=48.41 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
...|+|.|+.|+||||++..+.+.+. ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999999873 23444344433
No 270
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.44 E-value=0.009 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.42 E-value=0.0085 Score=55.73 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998775
No 272
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.42 E-value=0.025 Score=47.30 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFL 108 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 108 (371)
...|++.|+.|+||||+++.+.+.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999883
No 273
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.41 E-value=0.022 Score=49.02 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++++.|.+|+||||++..++..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999887
No 274
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.41 E-value=0.023 Score=46.83 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
.|+|-|.-|+||||.++.+++.+. .....+++..-.......+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~---~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE---KRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCCCcHHHHHHHHh
Confidence 578899999999999999999883 2222344444333333444444444
No 275
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.40 E-value=0.0059 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++++|+|+.|+|||||+..++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 276
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.35 E-value=0.032 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 80 EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 80 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....+++|.|+.|+|||||++.++...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3556799999999999999999998876
No 277
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.34 E-value=0.0043 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..+|+|.|++|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.31 E-value=0.0087 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988776
No 279
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.30 E-value=0.066 Score=50.83 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHH
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSI 135 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l 135 (371)
.++.|.. .+...++|.|.+|+|||+|+.++++.. +-+.++++-++... ...++.+++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345689999999999999999988764 22477788777655 355666654
No 280
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.30 E-value=0.01 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999887654
No 281
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.013 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999887
No 282
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.22 E-value=0.023 Score=48.45 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 86 VGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
|+|.|-||+||||+|..++..+. ..-..++-++.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcChH
Confidence 56699999999999999999983 222467778776655443
No 283
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.21 E-value=0.022 Score=49.13 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHhcC-C-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 72 DRVWRCLMEE-Q-MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 72 ~~l~~~L~~~-~-~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-+..++... . ...+.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3355555433 2 4579999999999999999999864
No 284
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.20 E-value=0.023 Score=47.84 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....|+|.|+.|+||||+++.+.+.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999887
No 285
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.20 E-value=0.017 Score=55.54 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=30.8
Q ss_pred cccchhHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 64 VVGLQSTFDRVWRCLM--EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 64 ~vGR~~~~~~l~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.+.+..+.+..... -....+++|.|+.|+|||||++.++..+
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 3444444444444331 1345789999999999999999999887
No 286
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.20 E-value=0.022 Score=47.93 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEe-CCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVA-SKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVK 160 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 160 (371)
...+.+++|+-|.||||-+...+.+.. .......++-.. +.... . .+.+.++............+...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~---- 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQ---- 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGHH----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHH----
Confidence 346889999999999988888777762 233334443332 22222 3 34444443322111112222222
Q ss_pred HhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCch
Q 043737 161 NMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTAREL 204 (371)
Q Consensus 161 ~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~ 204 (371)
.. +.--+|++|++.-...+.++...+. ..|..||+|.++.
T Consensus 87 ~~-~~~dvViIDEaQF~~~v~el~~~l~---~~gi~VI~~GL~~ 126 (234)
T 2orv_A 87 EA-LGVAVIGIDEGQFFPDIVEFCEAMA---NAGKTVIVAALDG 126 (234)
T ss_dssp HH-TTCSEEEESSGGGCTTHHHHHHHHH---HTTCEEEEECCSB
T ss_pred Hh-ccCCEEEEEchhhhhhHHHHHHHHH---hCCCEEEEEeccc
Confidence 22 2233999999864433433333332 2577899999883
No 287
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.19 E-value=0.023 Score=52.80 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCC-eEEEEEeCCc-CCHHHHHHHHHHH--hccC--CCCCC
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFD-FVIWVVASKD-LQLEQIQGSIAKK--INLF--NESWN 147 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~l~~~--l~~~--~~~~~ 147 (371)
++.|.. .+...++|.|.+|+|||+|+.++++......++-+ .++++-++.. ....++.+.+... +... .-...
T Consensus 142 ID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ats 221 (465)
T 3vr4_D 142 IDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLA 221 (465)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEET
T ss_pred EecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECC
Confidence 444433 23346788999999999999999888621112222 5666666543 3456666665542 1100 00001
Q ss_pred cCCHHH------HHHHHHHHh---CCCceEEEEeCCC
Q 043737 148 SRSLQE------KSQDIVKNM---SNKKFVLLLDHIW 175 (371)
Q Consensus 148 ~~~~~~------~~~~l~~~l---~~~~~LlVlDdv~ 175 (371)
...+.. ..-.+.+++ .++.+|+++||+-
T Consensus 222 d~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 222 NDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 222221 112233443 3789999999985
No 288
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.17 E-value=0.014 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998887
No 289
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.17 E-value=0.011 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999887654
No 290
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.16 E-value=0.012 Score=50.20 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.. .+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999987654
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.16 E-value=0.0059 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|+|++|+||||++..++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998876
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.14 E-value=0.013 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|+|.|+.|+||||||..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999999887
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.015 Score=50.41 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|+|+.|+|||||++.++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456799999999999999999988765
No 294
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987664
No 295
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.11 E-value=0.012 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++.|.|++|+|||||+.+++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998765
No 296
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.11 E-value=0.059 Score=60.93 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCC-cCCHHHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWN-SRSLQEKSQDIVKN 161 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~l~~~ 161 (371)
.+.|.++|++|+|||++|+.++... . .+ ....++.+...+...+...+...+........ ...+ .
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---~-~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P---------~ 1332 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---S-LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP---------K 1332 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---S-SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE---------B
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---C-CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC---------C
Confidence 3588899999999999998887664 1 22 45667777777777766666655432110000 0000 0
Q ss_pred hCCCceEEEEeCCC
Q 043737 162 MSNKKFVLLLDHIW 175 (371)
Q Consensus 162 l~~~~~LlVlDdv~ 175 (371)
-.++++++.+||++
T Consensus 1333 ~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1333 SDIKNLVLFCDEIN 1346 (2695)
T ss_dssp SSSSCEEEEEETTT
T ss_pred CCCceEEEEecccc
Confidence 03577899999974
No 297
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.10 E-value=0.021 Score=49.41 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
++|+|.|-||+||||+|..++..+.+ .-..++.++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~---~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA---MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH---CCCcEEEEcCCCC
Confidence 57778999999999999999988842 2235677776543
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.09 E-value=0.015 Score=45.61 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+.|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998764
No 299
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.07 E-value=0.016 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.+-|.|.|++|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467899999999999999999875
No 300
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.07 E-value=0.033 Score=50.48 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
....+++..|-||+||||+|..++..+... ..-..++-++.....++..
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~-~~G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALS-QPNKQFLLISTDPAHNLSD 64 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCCHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCCHHH
Confidence 345678888999999999999998887300 2223566676654444433
No 301
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.07 E-value=0.014 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-.|+|.|+.|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998765
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.018 Score=46.81 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998764
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.01 E-value=0.015 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 304
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.00 E-value=0.032 Score=50.07 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
...+++++.|-||+||||+|..++..+.+ .-..+.-++....
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~---~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSK---VRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHT---SSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCeEEEEECCCC
Confidence 44678888999999999999999988842 2234666665543
No 305
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.00 E-value=0.013 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 306
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.028 Score=45.51 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 72 DRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 72 ~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
..+.+ +.......|+|.|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455678899999999999999999854
No 307
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.98 E-value=0.029 Score=53.95 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=33.9
Q ss_pred CccccchhHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLM--EEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+..+-|.+..+.+.+... .....+|.+.|++|+||||+|+.+...+
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 445556655555565552 2345789999999999999999998876
No 308
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.98 E-value=0.2 Score=47.05 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=53.8
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhccC----CCCCC
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLT-QINKKFLHTPNDFDFVIWVVASKDL-QLEQIQGSIAKKINLF----NESWN 147 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~----~~~~~ 147 (371)
++.|.. .+...++|.|.+|+|||+|+. .+++.. ..-..++++-++... .+.++.+.+...=... .-...
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 153 VDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 455543 345578899999999999974 555432 222245677777654 4566666655431110 00001
Q ss_pred cCCHHH----------HHHHHHHHhCCCceEEEEeCCCC
Q 043737 148 SRSLQE----------KSQDIVKNMSNKKFVLLLDHIWE 176 (371)
Q Consensus 148 ~~~~~~----------~~~~l~~~l~~~~~LlVlDdv~~ 176 (371)
...+.. ..++++. +++.+|+++||+..
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 122221 1223332 58899999999853
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.97 E-value=0.016 Score=51.32 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|+|+.|+|||||++.++.-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999987654
No 310
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.96 E-value=0.011 Score=47.92 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043737 85 IVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
-|+|.|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 311
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.95 E-value=0.015 Score=49.68 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355699999999999999999987654
No 312
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.94 E-value=0.021 Score=49.52 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 313
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.94 E-value=0.031 Score=55.11 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 69 STFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 69 ~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
...+.+..+|.. ..+..|+||+|+|||+.+.++...+... ...+.++...+..++.++..+.
T Consensus 193 ~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 344556666633 3488899999999998777766665221 1245666666555666666654
No 314
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.93 E-value=0.042 Score=51.63 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=54.1
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHHhccC----CCC
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLT-QINKKFLHTPNDFD-FVIWVVASKDL-QLEQIQGSIAKKINLF----NES 145 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~l~~~l~~~----~~~ 145 (371)
.++.|.. .+...++|.|.+|+|||+||. .+++.. ..+ .++++-++... .+.++.+.+...=... .-.
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3455543 345588999999999999965 555543 234 34666666543 4566666665421110 000
Q ss_pred CCcCCHHHH------HHHHHHHh--CCCceEEEEeCCC
Q 043737 146 WNSRSLQEK------SQDIVKNM--SNKKFVLLLDHIW 175 (371)
Q Consensus 146 ~~~~~~~~~------~~~l~~~l--~~~~~LlVlDdv~ 175 (371)
.....+... .-.+.+++ +++.+|+++||+.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 012221111 11223333 4789999999985
No 315
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.93 E-value=0.013 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44699999999999999999887654
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.93 E-value=0.014 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..|+|.|+.|+|||||+..++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.91 E-value=0.016 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999998765
No 318
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.90 E-value=0.015 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345699999999999999999987654
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.87 E-value=0.018 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 320
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.87 E-value=0.016 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4459999999999999999999874
No 321
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.86 E-value=0.011 Score=51.23 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...|+|.|..|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998876
No 322
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.014 Score=49.80 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999887654
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.85 E-value=0.017 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999998875
No 324
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.84 E-value=0.014 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999987654
No 325
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.83 E-value=0.015 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999987765
No 326
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.83 E-value=0.024 Score=52.58 Aligned_cols=101 Identities=8% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCC-------CCCC-eEEEEEeCCc-CCHHHHHHHHHHH--hc--
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTP-------NDFD-FVIWVVASKD-LQLEQIQGSIAKK--IN-- 140 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-------~~f~-~~~wv~~~~~-~~~~~~~~~l~~~--l~-- 140 (371)
++.|.. .+...++|.|.+|+|||+|+.++++...... ++-+ .++++-++.. ....++.+.+... +.
T Consensus 138 ID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rt 217 (464)
T 3gqb_B 138 IDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRS 217 (464)
T ss_dssp HHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGE
T ss_pred eecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccce
Confidence 444433 3345678899999999999999988862110 1222 5666666543 3455666665442 11
Q ss_pred -cCCCCCCcCCHHHH-----HHHHHHHh---CCCceEEEEeCCC
Q 043737 141 -LFNESWNSRSLQEK-----SQDIVKNM---SNKKFVLLLDHIW 175 (371)
Q Consensus 141 -~~~~~~~~~~~~~~-----~~~l~~~l---~~~~~LlVlDdv~ 175 (371)
.-............ .-.+.+++ .++.+|+++||+.
T Consensus 218 vvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 218 VLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 00000011122211 22233443 3789999999985
No 327
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.80 E-value=0.015 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999987664
No 328
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.80 E-value=0.019 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+++|+|+.|+||||++..++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999999887
No 329
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.80 E-value=0.024 Score=49.69 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
.++|+|.|-||+||||+|..++..+.+ .-..++.+++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~---~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE---MGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 367888999999999999999988842 2235677776543
No 330
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.80 E-value=0.017 Score=50.02 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999987654
No 331
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.79 E-value=0.017 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.|++.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998764
No 332
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.78 E-value=0.025 Score=54.73 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|.|.|++|+||||+|+.+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999887
No 333
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.78 E-value=0.017 Score=49.84 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 334
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.78 E-value=0.013 Score=49.01 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999987654
No 335
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.77 E-value=0.02 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 336
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.76 E-value=0.086 Score=49.48 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHHhccCC----CC
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLT-QINKKFLHTPNDFD-FVIWVVASKDL-QLEQIQGSIAKKINLFN----ES 145 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~l~~~l~~~~----~~ 145 (371)
.++.|.. .+...++|.|.+|+|||+||. .+++.. ..+ .++++-++... ...++.+.+...=.... -.
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3455543 345578899999999999965 565554 234 34666666543 45566666654211100 00
Q ss_pred CCcCCHHHH------HHHHHHHh--CCCceEEEEeCCC
Q 043737 146 WNSRSLQEK------SQDIVKNM--SNKKFVLLLDHIW 175 (371)
Q Consensus 146 ~~~~~~~~~------~~~l~~~l--~~~~~LlVlDdv~ 175 (371)
.....+... .-.+.+++ +++.+|+++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 012222211 11223333 4789999999984
No 337
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.74 E-value=0.017 Score=50.23 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345699999999999999999987664
No 338
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.73 E-value=0.15 Score=43.21 Aligned_cols=40 Identities=13% Similarity=-0.069 Sum_probs=27.6
Q ss_pred ccchhHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 65 VGLQSTFDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 65 vGR~~~~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+...+-+..++ +.. .+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~-~~~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDK--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHT-TTS--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHH-hCC--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 33445544444444 332 38889999999999999888765
No 339
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.71 E-value=0.027 Score=51.99 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998743
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.71 E-value=0.018 Score=45.46 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-.|+|.|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998764
No 341
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.69 E-value=0.021 Score=49.02 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999987665
No 342
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.66 E-value=0.019 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999987654
No 343
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.63 E-value=0.047 Score=50.95 Aligned_cols=101 Identities=8% Similarity=0.014 Sum_probs=56.5
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcC-CHHHHHHHHHHHhccC----CCCCC
Q 043737 75 WRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDL-QLEQIQGSIAKKINLF----NESWN 147 (371)
Q Consensus 75 ~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~l~~~l~~~----~~~~~ 147 (371)
++.|.. .+...++|.|.+|+|||+|+.++++.....+.. -+.++++-++... ...++.+++...=... .-...
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444433 334567788999999999999999887321211 2356666665443 4566666665431110 00001
Q ss_pred cCCHHH------HHHHHHHHh---CCCceEEEEeCCC
Q 043737 148 SRSLQE------KSQDIVKNM---SNKKFVLLLDHIW 175 (371)
Q Consensus 148 ~~~~~~------~~~~l~~~l---~~~~~LlVlDdv~ 175 (371)
...+.. ..-.+.+++ +++.+|+++||+.
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 222221 122223333 3789999999974
No 344
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.61 E-value=0.026 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|+.|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 345
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.60 E-value=0.022 Score=48.53 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHH
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGS 134 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 134 (371)
...++.|.|.+|+|||+||.+++.... ......+++++... +...+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHH
Confidence 346999999999999999999775531 11223466666543 34444443
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.60 E-value=0.018 Score=48.81 Aligned_cols=25 Identities=36% Similarity=0.204 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...+|+|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4569999999999999999988765
No 347
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.60 E-value=0.038 Score=49.38 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQI 131 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 131 (371)
..+++..|-||+||||+|..++..+.+ .-..++-++.....+....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~---~G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR---SGKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH---CCCcEEEEeCCCCcCHHHH
Confidence 467788899999999999999888732 2335677776655444433
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.60 E-value=0.024 Score=45.27 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+...|+|.|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45688999999999999999997653
No 349
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.58 E-value=0.11 Score=49.61 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=39.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc-CCHHHHHHHH
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD-LQLEQIQGSI 135 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~l 135 (371)
.++.|.. .+...++|.|.+|+|||+|+.++++.. +-+.++++-++.. ....++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555544 345689999999999999999998875 2256777777654 2344555443
No 350
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.57 E-value=0.018 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999987665
No 351
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.56 E-value=0.018 Score=45.82 Aligned_cols=25 Identities=36% Similarity=0.292 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 352
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.53 E-value=0.06 Score=50.62 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhhccCCCCCCC-eEEEEEeCCcC-CHHHHHHHHHHHhcc-------C--CC-CCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLT-QINKKFLHTPNDFD-FVIWVVASKDL-QLEQIQGSIAKKINL-------F--NE-SWNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~l~~~l~~-------~--~~-~~~~ 148 (371)
+...++|.|.+|+|||+||. .+++.. . .+ .++++-++... ...++.+.+...=.. . .. ....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 34578899999999999965 555543 2 34 45666666543 345555555432100 0 00 0001
Q ss_pred CCHH----HHHHHHHHHhCCCceEEEEeCCC
Q 043737 149 RSLQ----EKSQDIVKNMSNKKFVLLLDHIW 175 (371)
Q Consensus 149 ~~~~----~~~~~l~~~l~~~~~LlVlDdv~ 175 (371)
.... ...+.++. +++.+|+++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1111 12333333 5899999999974
No 353
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.52 E-value=0.019 Score=50.25 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987664
No 354
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.52 E-value=0.024 Score=45.80 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998755
No 355
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.50 E-value=0.022 Score=45.92 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.-.|+|.|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999865
No 356
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.49 E-value=0.022 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-|+|.|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998764
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.026 Score=46.97 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....|+|.|++|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999998765
No 358
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.47 E-value=0.022 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999988664
No 359
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.023 Score=45.71 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.....|+|.|.+|+|||||+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999988743
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.44 E-value=0.023 Score=45.03 Aligned_cols=25 Identities=36% Similarity=0.308 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998664
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.023 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-|+|.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998664
No 362
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.43 E-value=0.054 Score=50.97 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=55.7
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHhhccC---CCCCCC-eEEEEEeCCcC-CHHHHHHHHHHHhccC----
Q 043737 74 VWRCLME-EQMGIVGLYGMGEVGKTTLLT-QINKKFLH---TPNDFD-FVIWVVASKDL-QLEQIQGSIAKKINLF---- 142 (371)
Q Consensus 74 l~~~L~~-~~~~~v~I~G~~GiGKTtLa~-~~~~~~~~---~~~~f~-~~~wv~~~~~~-~~~~~~~~l~~~l~~~---- 142 (371)
.++.|.. .+...++|.|.+|+|||+||. .+++.... ...+.+ .++++-++... .+.++.+.+...=...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 3455543 345578899999999999954 55555410 012233 46677776543 4566666665421110
Q ss_pred CCCCCcCCHHHH------HHHHHHHh--CCCceEEEEeCCCC
Q 043737 143 NESWNSRSLQEK------SQDIVKNM--SNKKFVLLLDHIWE 176 (371)
Q Consensus 143 ~~~~~~~~~~~~------~~~l~~~l--~~~~~LlVlDdv~~ 176 (371)
.-......+... .-.+.+++ .++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 000011221111 11222333 47899999999853
No 363
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.43 E-value=0.035 Score=49.11 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 71 ~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
+++|.+.+ ...+++|.|+.|+|||||++.+. ..
T Consensus 156 i~~L~~~l---~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYL---EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHT---TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhc---cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45555554 24589999999999999999998 54
No 364
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.43 E-value=0.022 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-.|+|.|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 365
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.43 E-value=0.023 Score=46.54 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+.+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34578899999999999998776653
No 366
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.43 E-value=0.023 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++|.|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988765
No 367
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.41 E-value=0.046 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..|+|-|..|+||||+++.+.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999998
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.40 E-value=0.024 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-|+|.|.+|+|||||+..+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 369
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.39 E-value=0.024 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998764
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.39 E-value=0.023 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 371
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.39 E-value=0.025 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45699999999999999999988654
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.37 E-value=0.023 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..|+|.|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 373
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.36 E-value=0.052 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.370 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|++|+|||||...+....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999998764
No 374
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.36 E-value=0.024 Score=45.41 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 44578999999999999999988764
No 375
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.36 E-value=0.019 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-.|+|.|.+|+|||||+..+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999987664
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.35 E-value=0.024 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999887764
No 377
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.35 E-value=0.021 Score=51.02 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45799999999999999999998653
No 378
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.35 E-value=0.041 Score=49.79 Aligned_cols=40 Identities=23% Similarity=0.143 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...+++..|-||+||||+|..++..+... -..++-++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~ 64 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVSTDP 64 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEECCT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 45677788999999999999998887321 22455665443
No 379
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.35 E-value=0.028 Score=46.50 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..+|+|.|+.|+||||+++.+++++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 380
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.34 E-value=0.027 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999865
No 381
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.34 E-value=0.025 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
No 382
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.34 E-value=0.022 Score=47.62 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998876
No 383
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.34 E-value=0.038 Score=53.85 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCC
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASK 124 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 124 (371)
...+++++.|.||+||||+|..++..+.+. -..++.++.+.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ---GKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHC---CCcEEEEECCC
Confidence 456789999999999999999998887422 23466666653
No 384
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.34 E-value=0.036 Score=45.67 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.4
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 84 GIVGLY-GMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 84 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
++|+|+ +-||+||||+|..++..+.. .-..++.++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHHH
Confidence 467676 77999999999999988842 223577788775544433
No 385
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.33 E-value=0.024 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468899999999999999998654
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.32 E-value=0.025 Score=45.18 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998654
No 387
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.024 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 388
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.30 E-value=0.028 Score=53.80 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+++|++|+||||+|+.+++.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998886
No 389
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.30 E-value=0.075 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|++.|+.|+||||++..+.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999998
No 390
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.29 E-value=0.027 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999988653
No 391
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.26 E-value=0.086 Score=56.31 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|+|+.|+|||||++.+....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 355699999999999999999887765
No 392
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.25 E-value=0.023 Score=49.13 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
..+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 558999999999999999998754
No 393
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.24 E-value=0.026 Score=44.64 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043737 85 IVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
-|+|.|.+|+|||||+..+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999998643
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.22 E-value=0.18 Score=48.30 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhcc-------------CCCCCCc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINL-------------FNESWNS 148 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~-------------~~~~~~~ 148 (371)
...+++|.|++|+|||||+..++..... .-..++++.... ....+.... ..++. .......
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA---NKERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEecccc
Confidence 4469999999999999999999877632 112345554433 223333222 11111 1111122
Q ss_pred CCHHHHHHHHHHH-hCCCceEEEEeCC
Q 043737 149 RSLQEKSQDIVKN-MSNKKFVLLLDHI 174 (371)
Q Consensus 149 ~~~~~~~~~l~~~-l~~~~~LlVlDdv 174 (371)
.+.++....+... +..++-++|+|-+
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilDp~ 380 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAIDSL 380 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECH
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCh
Confidence 3455555444443 4566779999954
No 395
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.21 E-value=0.033 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
+...|+|.|.+|+|||||+..+...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999998653
No 396
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.20 E-value=0.027 Score=45.76 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34578899999999999999988764
No 397
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.20 E-value=0.03 Score=45.39 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999998764
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.19 E-value=0.025 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 043737 85 IVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
-|+|.|.+|+|||||+..+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999988654
No 399
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.18 E-value=0.027 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999987664
No 400
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.16 E-value=0.028 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 401
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.16 E-value=0.071 Score=52.29 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=34.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIA 136 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~ 136 (371)
.+.+.|+|++|+|||+++..++..+.. .....+.+........+.+...+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHT---SSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCcHHHHHHHHHHHH
Confidence 357889999999999998888777621 123355566655555555555543
No 402
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.15 E-value=0.033 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578899999999999999998764
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.14 E-value=0.025 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-|+|.|.+|+|||||+..+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
No 404
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.13 E-value=0.028 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|.+|+|||||+..+....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999998753
No 405
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.13 E-value=0.022 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|+|+.|+|||||++.++.-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 355699999999999999999887654
No 406
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.12 E-value=0.036 Score=44.29 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998763
No 407
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.10 E-value=0.029 Score=44.71 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998764
No 408
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.10 E-value=0.028 Score=47.38 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|.|++|+||||+|+.+++.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 409
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.09 E-value=0.023 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468899999999999999998764
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.09 E-value=0.039 Score=43.63 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|.+|+|||||+..+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999997654
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.08 E-value=0.03 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-.|+|.|.+|+|||||+..+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 412
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.07 E-value=0.029 Score=50.72 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44699999999999999999987654
No 413
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.07 E-value=0.033 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.+.+|+|+.|+|||||+..++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987655
No 414
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.06 E-value=0.033 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45699999999999999999987654
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.06 E-value=0.03 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998764
No 416
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.04 E-value=0.031 Score=44.98 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-.|+|.|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578899999999999999998764
No 417
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.04 E-value=0.071 Score=46.85 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCceEEEEEc---CCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCC
Q 043737 70 TFDRVWRCLMEEQMGIVGLYG---MGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQ 127 (371)
Q Consensus 70 ~~~~l~~~L~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 127 (371)
.+.++.+.+... .++++|.+ -||+||||+|..++..+.. .-..++-++.....+
T Consensus 22 ~~~~~~r~~~~~-~~~i~v~~~s~KGGvGKTT~a~nLA~~la~---~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 22 ILEELRRILSNK-NEAIVILNNYFKGGVGKSKLSTMFAYLTDK---LNLKVLMIDKDLQAT 78 (298)
T ss_dssp HHHHHHHHHHHH-CSCEEEEECCSSSSSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCH
T ss_pred HHHHHHHHhcCC-CcEEEEEeccCCCCchHHHHHHHHHHHHHh---CCCeEEEEeCCCCCC
Confidence 445555555433 34566665 9999999999999988732 223577777766543
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.04 E-value=0.025 Score=45.79 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 043737 86 VGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 86 v~I~G~~GiGKTtLa~~~~~~ 106 (371)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.03 E-value=0.03 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998764
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.03 E-value=0.033 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 421
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.02 E-value=0.033 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45699999999999999999988664
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.01 E-value=0.031 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.225 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999854
No 423
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.01 E-value=0.056 Score=45.86 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=29.6
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCc
Q 043737 82 QMGIVGLY-GMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKD 125 (371)
Q Consensus 82 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 125 (371)
..++|+|+ +-||+||||+|..++..+.. ..-..++.+++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~--~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ--EPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT--STTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh--CcCCCEEEEECCCC
Confidence 34667666 66899999999999999831 11346777776543
No 424
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.98 E-value=0.031 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 043737 85 IVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 85 ~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-|+|.|.+|+|||+|+..+....
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47889999999999999998653
No 425
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.97 E-value=0.032 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998754
No 426
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.96 E-value=0.048 Score=49.77 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccCCCCC-CCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHH
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKFLHTPND-FDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIV 159 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 159 (371)
....+++|+|+.|+|||||++.++.... .. -..++++.-..... +-...+.-....-..+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~~e~~-------~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYV-------FKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESSCCSC-------CCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEecccHhhh-------hccCceEEEeeecCCCHHHHHHHHH
Confidence 4557999999999999999999987762 11 12333433211000 0000000000000001111234556
Q ss_pred HHhCCCceEEEEeCCCCcccccccccccCCCCCCCcEEEEecCchH
Q 043737 160 KNMSNKKFVLLLDHIWELVDLSQVGLPVPCRTSASNKTVFTARELE 205 (371)
Q Consensus 160 ~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~iliTsR~~~ 205 (371)
..+...+-++++|++-+.+....... ....|..++.|+-...
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~----~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALR----AAETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHH----HHTTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHH----HHhcCCEEEEEECcch
Confidence 66666777999999965544332211 1123556777776543
No 427
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.95 E-value=0.035 Score=50.27 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|+.|+|||||++.++.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345699999999999999999887654
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.94 E-value=0.035 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45699999999999999999987654
No 429
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.91 E-value=0.033 Score=45.28 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 430
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.91 E-value=0.033 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-|+|.|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 431
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.90 E-value=0.034 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368899999999999999988653
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.90 E-value=0.034 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999988653
No 433
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.90 E-value=0.034 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4578899999999999999998764
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.89 E-value=0.034 Score=44.63 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|.+|+|||||+..+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998553
No 435
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.89 E-value=0.024 Score=57.35 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 62 PTVVGLQSTFDRVWRCLME-------------EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 62 ~~~vGR~~~~~~l~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..++|-+...+.|.+.+.- ...+.+.++|++|+|||+||+.++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4568888887877776541 134568899999999999999999987
No 436
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.87 E-value=0.035 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...++|+|+.|+|||||++.++...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998776
No 437
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.86 E-value=0.04 Score=49.54 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+++|.|++|+|||||...+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 466799999999999999999998665
No 438
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.86 E-value=0.033 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44689999999999999999987654
No 439
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.85 E-value=0.03 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45699999999999999999988654
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.85 E-value=0.038 Score=44.61 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....|+|.|.+|+|||||+..+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998654
No 441
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.85 E-value=0.026 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999987653
No 442
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.044 Score=44.74 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44578899999999999999998764
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.83 E-value=0.035 Score=45.58 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998664
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.036 Score=44.33 Aligned_cols=25 Identities=36% Similarity=0.290 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468899999999999999998764
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.036 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3478899999999999999998764
No 446
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.79 E-value=0.035 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998774
No 447
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.78 E-value=0.035 Score=45.61 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998764
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.78 E-value=0.036 Score=45.88 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998764
No 449
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.78 E-value=0.05 Score=48.06 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 71 ~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++++...+ ...+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l---~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYL---KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHH---SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHh---cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34455544 23589999999999999999997664
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.77 E-value=0.038 Score=44.88 Aligned_cols=25 Identities=40% Similarity=0.325 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999997666544
No 451
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.037 Score=45.65 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578899999999999999988764
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.73 E-value=0.038 Score=44.82 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.037 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 454
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.70 E-value=0.041 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|.|.|++|+||||+|+.+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998886
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.70 E-value=0.038 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998654
No 456
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.70 E-value=0.038 Score=45.83 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998764
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.68 E-value=0.026 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
...--|+|.|.+|+|||||+..+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998643
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.68 E-value=0.029 Score=45.96 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
...-|+|.|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999853
No 459
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.65 E-value=0.039 Score=44.90 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998764
No 460
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.64 E-value=0.04 Score=44.79 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998664
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.64 E-value=0.037 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
--|+|.|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 462
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.039 Score=45.27 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999999998764
No 463
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.62 E-value=0.043 Score=51.84 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+++|.+|+||||+++.++..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 464
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.61 E-value=0.023 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.....|+|.|+.|+|||||...++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999887654
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.61 E-value=0.028 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999987654
No 466
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.59 E-value=0.041 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 467
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.58 E-value=0.047 Score=45.89 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999997653
No 468
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.58 E-value=0.051 Score=49.62 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=31.9
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCH
Q 043737 82 QMGIVGLY-GMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQL 128 (371)
Q Consensus 82 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 128 (371)
..++|+|+ |-||+||||+|..++..+.. .-..++.+++....+.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~---~g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHAN---MGKKVFYLNIEQCGTT 186 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHH---HTCCEEEEECCTTCCH
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHh---CCCCEEEEECCCCCCH
Confidence 45788887 59999999999999888732 2235788887744433
No 469
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.57 E-value=0.06 Score=48.92 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEE
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVV 121 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 121 (371)
....++|+|+.|+|||||++.++.... ...+.+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~----~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP----FDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC----TTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC----CCceEEEEC
Confidence 445899999999999999999988762 224555554
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.57 E-value=0.067 Score=48.35 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 71 FDRVWRCLMEEQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 71 ~~~l~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
++.|...+ ...+++|.|++|+|||||+..++...
T Consensus 206 l~~L~~~~---~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEAL---TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHHHH---TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHHHHhc---CCCEEEEECCCCccHHHHHHHHhccc
Confidence 34444443 23589999999999999999998665
No 471
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.56 E-value=0.045 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
....+++|.|+.|+|||||.+.++.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34569999999999999999998764
No 472
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.56 E-value=0.042 Score=44.54 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998653
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.04 Score=45.92 Aligned_cols=23 Identities=35% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINK 105 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~ 105 (371)
..-|+|.|.+|+|||||+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.043 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
-.|+|.|.+|+|||||+..+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478899999999999999998764
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.51 E-value=0.091 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....|+|+|+.|+|||||++.+.+-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 345689999999999999999887654
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.50 E-value=0.043 Score=44.97 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...-|+|.|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45688999999999999999998654
No 477
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.48 E-value=0.094 Score=47.28 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....++|.|+.|+|||||++.++...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455699999999999999999999886
No 478
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.48 E-value=0.04 Score=44.92 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|.|.+|+|||||+..+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.45 E-value=0.043 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998764
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.45 E-value=0.04 Score=45.23 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987553
No 481
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.40 E-value=0.056 Score=45.46 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...+|+|.|+.|+||||+++.+++.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 45699999999999999999999987
No 482
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.045 Score=44.58 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34578999999999999999998753
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.39 E-value=0.042 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..--|+|.|.+|+|||||+..+....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987653
No 484
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.33 E-value=0.049 Score=48.16 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
....|+|.|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999876
No 485
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.28 E-value=0.056 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....+|+|.|.+|+|||||+..++...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999998765
No 486
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.27 E-value=0.057 Score=46.82 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
...|+|.|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998664
No 487
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.27 E-value=0.06 Score=48.23 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHHHHHHHHHHhccCCCCCCcCCHHHHHHHHHHHh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQIQGSIAKKINLFNESWNSRSLQEKSQDIVKNM 162 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 162 (371)
...++|+|+.|+|||||++.++.... ...+.+.+.-........ .-..+.... . .-......+...+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~----~~~~i~~~~----g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKH----HKNYTQLFF----G-GNITSADCLKSCL 237 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSS----CSSEEEEEC----B-TTBCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeecccccc----chhEEEEEe----C-CChhHHHHHHHHh
Confidence 34899999999999999999987762 224555554322111000 000000000 0 1112233445556
Q ss_pred CCCceEEEEeCCCCcc
Q 043737 163 SNKKFVLLLDHIWELV 178 (371)
Q Consensus 163 ~~~~~LlVlDdv~~~~ 178 (371)
..++-++++|+.-..+
T Consensus 238 ~~~p~ilildE~~~~e 253 (330)
T 2pt7_A 238 RMRPDRIILGELRSSE 253 (330)
T ss_dssp TSCCSEEEECCCCSTH
T ss_pred hhCCCEEEEcCCChHH
Confidence 6777799999986643
No 488
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.27 E-value=0.055 Score=45.87 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 81 EQMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 81 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.....|+|.|.+|+|||||+..+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345689999999999999999998764
No 489
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.25 E-value=0.046 Score=49.78 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHH
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLE 129 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 129 (371)
.+++.+.|-||+||||+|..++..+.. .-..++.++. ...+..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~---~g~~vllvd~-~~~~l~ 44 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLAS---QGKRVLLAGL-AEPVLP 44 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHH---TTCCEEEEEC-SCSHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH---CCCCeEEEeC-CCCChH
Confidence 367889999999999999999888732 2234666666 444433
No 490
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.25 E-value=0.049 Score=44.27 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.-|+|.|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999998763
No 491
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.25 E-value=0.1 Score=44.96 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 72 DRVWRCLMEE--QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 72 ~~l~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.++.+.+... ....|+|.|..|+|||||+..+....
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444332 45678999999999999999998764
No 492
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.21 E-value=0.05 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
.--|+|.|.+|+|||||+..+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998654
No 493
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.21 E-value=0.045 Score=45.48 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
.--|+|.|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999999765
No 494
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.051 Score=44.86 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 495
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.17 E-value=0.041 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 043737 84 GIVGLYGMGEVGKTTLLTQINKK 106 (371)
Q Consensus 84 ~~v~I~G~~GiGKTtLa~~~~~~ 106 (371)
--|+|.|+.|+|||||...++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34589999999999999997653
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.16 E-value=0.052 Score=44.82 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998653
No 497
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.15 E-value=0.11 Score=44.74 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCceEEEE-EcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 81 EQMGIVGL-YGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 81 ~~~~~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
...++|+| .|-||+||||+|..++..+. .-..++.+++....+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la----~g~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS----KNNKVLLIDMDTQASITS 71 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT----TTSCEEEEEECTTCHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH----CCCCEEEEECCCCCCHHH
Confidence 34567766 57889999999999999983 235678888776544333
No 498
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.15 E-value=0.04 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 83 MGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 83 ~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
..-|+|.|.+|+|||||+..+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987553
No 499
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.15 E-value=0.12 Score=42.86 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=30.5
Q ss_pred EEEE-EcCCCCcHHHHHHHHHhhccCCCCCCCeEEEEEeCCcCCHHH
Q 043737 85 IVGL-YGMGEVGKTTLLTQINKKFLHTPNDFDFVIWVVASKDLQLEQ 130 (371)
Q Consensus 85 ~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 130 (371)
+|+| .+-||+||||++..++..+.+ .- .++.++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~---~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLAL---QG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHT---TS-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHh---cC-CEEEEECCCCCCHHH
Confidence 3444 688999999999999999842 22 688888876654443
No 500
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.14 E-value=0.1 Score=45.74 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 043737 82 QMGIVGLYGMGEVGKTTLLTQINKKF 107 (371)
Q Consensus 82 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 107 (371)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 34689999999999999999998664
Done!