BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043738
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 7/203 (3%)
Query: 120 GAIFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRD 179
IF+ +GV+ + P L +A+ +A+ GK P + RRI G+ + + +
Sbjct: 3 AVIFDXDGVLXDTEP-LYFEAYRRVAESYGK-PYTEDLHRRIXGVPEREGLPILXEALEI 60
Query: 180 PAELRRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPMALVSTHPRKTLETAIDS 239
L R+ E + + + + G +E + + +I +AL ++ P++ +
Sbjct: 61 KDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRR 120
Query: 240 IGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKC 299
+ +E+YF V + V GKPDPE+++ + L +PE+ +VF +S VEAA A ++
Sbjct: 121 LDLEKYFDVXVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIER 180
Query: 300 V-----AVASKHPVYELGAADLV 317
+ ++ + E GA LV
Sbjct: 181 IYGVVHSLNDGKALLEAGAVALV 203
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 14/212 (6%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWS---- 177
IF+ +GVI D + AW +A E+ P R++G+ E+++ +L +
Sbjct: 6 IFDLDGVIT-DTAEYHFLAWKHIA-EQIDIPFDRDXNERLKGISREESLESILIFGGAET 63
Query: 178 -RDPAELRRMASRMEEIYQALQGGIY--RLRTGSKEFVNILMHYKIPMALVSTHPRKTLE 234
AE + + R YQ L + L G + L + I + L S+ +
Sbjct: 64 KYTNAEKQELXHRKNRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSS--RNAP 121
Query: 235 TAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHD 294
+ + I + F AIV + +GKPDP++F+ AA L P C ++ + A
Sbjct: 122 KILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKS 181
Query: 295 ARMKCVAVASKHPVYELGAADLVVRHLDELSV 326
A V V P ADLVVR +L++
Sbjct: 182 AGXFAVGVGQGQPXL---GADLVVRQTSDLTL 210
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 23/198 (11%)
Query: 120 GAIFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSR- 178
G IF+ +GVI D L QAW +A E G S F ++G+ ++++ +L
Sbjct: 7 GVIFDLDGVIT-DTAHLHFQAWQQIAAEIGISIDAQFN-ESLKGISRDESLRRILQHGGK 64
Query: 179 ----DPAELRRMASRMEEIYQALQGGIYRLRT--------GSKEFVNILMHYKIPMALVS 226
+ E ++A R +Y ++ LR G + + L +I + L S
Sbjct: 65 EGDFNSQERAQLAYRKNLLY------VHSLRELTVNAVLPGIRSLLADLRAQQISVGLAS 118
Query: 227 THPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSN 286
T + ++ + E+FT A + KPDPE+F+ A L P+ CI ++
Sbjct: 119 VSLNAP--TILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQ 176
Query: 287 QTVEAAHDARMKCVAVAS 304
++A + + M+ V + +
Sbjct: 177 AGIDAINASGMRSVGIGA 194
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPA 181
+F+ +GV++E + Q W ++ E G I G + + ++ L D
Sbjct: 32 LFDLDGVLVESE-GIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLA-YLAQQHDFV 89
Query: 182 ELRRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPMALVSTHPRKTLETAIDSIG 241
+E + A G+ + G+ E + L +P A+ S R L + G
Sbjct: 90 PPPDFLDVLETRFNAAMTGVTAIE-GAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAG 148
Query: 242 IEEYFTAIVAAEDVH-------RGKPDPEMFVYAAQLLKFIPERCIVFGNS 285
+ E +A E ++ RGKP P+++ +AAQ L +PERC+V +S
Sbjct: 149 LTE-----LAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDS 194
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 16/211 (7%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVL-----CW 176
IF+ +GVI D AW LA + G F ++G+ +++ +L +
Sbjct: 30 IFDLDGVIT-DTAYYHYMAWRKLAHKVGIDIDTKF-NESLKGISRMESLDRILEFGNKKY 87
Query: 177 SRDPAELRRMASRMEEIYQALQGGIYR--LRTGSKEFVNILMHYKIPMALVSTHPRKTLE 234
S E RMA Y +L I + G + + + I + L S K
Sbjct: 88 SFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSS--ASKNAI 145
Query: 235 TAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHD 294
++ +GI + F I A KP PE+F+ +A+ L P+ CI +++ ++A +
Sbjct: 146 NVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINS 205
Query: 295 ARMKCVAVASKHPVYE-LGAADLVVRHLDEL 324
A M V V + YE L A+LVV ++L
Sbjct: 206 ANMFSVGVGN----YENLKKANLVVDSTNQL 232
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 207 GSKEFVNILMHYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFV 266
G E ++ L +A+ ++ K + G++ T I + V RGKP P+M +
Sbjct: 108 GVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSVERGKPHPDMAL 167
Query: 267 YAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVA 303
+ A+ L PERC+V G+ E A M + V+
Sbjct: 168 HVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVS 204
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 119 LGAIFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIE-----GMKNEQAISEV 173
L AIF+ +G++I+ P L +A L + G I RR E G++ + +
Sbjct: 10 LAAIFDXDGLLIDSEP-LWDRAELDVXASLGVD-----ISRRNELPDTLGLRIDXVVD-- 61
Query: 174 LCWSRDPAELRRMASRMEEIYQALQGGIYR------LRTGSKEFVNILMHYKIPMALVST 227
L ++R P SR E + + + I L G +E V + + + L S
Sbjct: 62 LWYARQPWN---GPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASA 118
Query: 228 HPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQ 287
P LE + + + F A+ +AE + KP P++++ A L P C+ +S
Sbjct: 119 SPLHXLEKVLTXFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVN 178
Query: 288 TVEAAHDARMKCVAV----ASKHPVYELGAADLVVRHLDELSVVDL 329
A+ AR + + V A P + L A++ + L EL+ DL
Sbjct: 179 GXIASKAARXRSIVVPAPEAQNDPRFVL--ANVKLSSLTELTAKDL 222
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPA 181
+F+ +GVI D + +AW LA+E G + +++G+ E ++ ++L +
Sbjct: 6 LFDLDGVIT-DTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV 64
Query: 182 ---ELRRMASRMEEIYQALQGGIY--RLRTGSKEFVNILMHYKIPMALVSTHPRKTLETA 236
E + +A R + Y + + + G + + L KI +AL S K
Sbjct: 65 SAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS--KNGPFL 122
Query: 237 IDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDA 295
++ + + YF AI +V KP P++F+ AA + P I +S ++A D+
Sbjct: 123 LERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDS 181
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 8/179 (4%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPA 181
+F +GVI D + +AW LA+E G + +++G+ E ++ ++L +
Sbjct: 6 LFXLDGVIT-DTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV 64
Query: 182 ---ELRRMASRMEEIYQALQGGIY--RLRTGSKEFVNILMHYKIPMALVSTHPRKTLETA 236
E + +A R + Y + + + G + + L KI +AL S K
Sbjct: 65 SAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS--KNGPFL 122
Query: 237 IDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDA 295
++ + + YF AI +V KP P++F+ AA + P I +S ++A D+
Sbjct: 123 LERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDS 181
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 122 IFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPA 181
+F+ +GVI D + +AW LA+E G + +++G+ E ++ ++L +
Sbjct: 6 LFDLDGVIT-DPAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV 64
Query: 182 ---ELRRMASRMEEIYQALQGGIY--RLRTGSKEFVNILMHYKIPMALVSTHPRKTLETA 236
E + +A R + Y + + + G + + L KI +AL S K
Sbjct: 65 SAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS--KNGPFL 122
Query: 237 IDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDAR 296
++ + + YF AI +V KP P++F+ AA + P I +S ++A D+
Sbjct: 123 LERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182
Query: 297 MKCVAVA 303
+ V
Sbjct: 183 ALPIGVG 189
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%)
Query: 201 IYRLRTGSKEFVNILMHYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKP 260
I RL KE + L +A+V+ P K ++ + + GI+ F+ + + + KP
Sbjct: 112 ISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDHLFSEXLGGQSLPEIKP 171
Query: 261 DPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVASKH 306
P F Y P++ + G+S + AAH A V + +
Sbjct: 172 HPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGY 217
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 219 KIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPER 278
++ + L++ R+T I++ + YF A+V + KP P +F Y LL P
Sbjct: 146 EVRLLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGD 205
Query: 279 CIVFGNSNQT-VEAAHDARMKCVAVASKHPVYELGAA 314
C++ G++ +T ++ +A +K +K+ + L ++
Sbjct: 206 CVMVGDTLETDIQGGLNAGLKATVWINKNGIVPLKSS 242
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 162 EGMKNEQAISEVLCWSRDPAEL-RRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKI 220
+ ++ Q I +VL EL ++++E++ L G+++ + L + I
Sbjct: 75 KALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPT-----AALMPGAEKLIIHLRKHGI 129
Query: 221 PMALVSTHPRKTLETAIDSIGIEEYFTA---IVAAED--VHRGKPDPEMFVYAAQLLKFI 275
P AL ++ + + + + +E+F+ IV +D V GKPDP++F+ A+ +F
Sbjct: 130 PFALATSSRSASFD--MKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAK--RFS 185
Query: 276 P----ERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRHLDELSVVDLKN 331
P E+C+VF ++ VEAA A M+ V V + + R L + + L +
Sbjct: 186 PPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGN----------LSRDLTTKATLVLNS 235
Query: 332 LADIESTEFG 341
L D + FG
Sbjct: 236 LQDFQPELFG 245
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 185 RMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPMALVSTHPRKTLETAIDSIGIEE 244
R++ + + Y+ LQ I L G+ E + L + + ++ T + ++ ++
Sbjct: 74 RLSEKHAQAYERLQHQIIAL-PGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDI 132
Query: 245 YFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
IV +DV GKPDP++F+ AA+ + + C+V G++ AA R K V
Sbjct: 133 NKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDXLAAR--RCKATGVGL 190
Query: 305 KHPVYELG 312
Y++G
Sbjct: 191 LSGGYDIG 198
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 219 KIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPER 278
++ + L++ R+T I++ + YF AIV + KP P +F + LL P
Sbjct: 136 EVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGD 195
Query: 279 CIVFGNSNQT-VEAAHDARMK 298
C++ G++ +T ++ +A +K
Sbjct: 196 CVMVGDTLETDIQGGLNAGLK 216
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 215 LMHYK---IPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQL 271
L H K I + ++ST R + + + + +++F I+ EDV KPDPE + A
Sbjct: 98 LTHLKKQGIRIGIISTKYRFRILSFLRNHXPDDWFDIIIGGEDVTHHKPDPEGLLLAIDR 157
Query: 272 LKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
LK PE + G+S A A + V S
Sbjct: 158 LKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTS 190
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 202 YRLRTGSKEFVNILMHYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPD 261
+ L G+ E ++ L I MA+VS + L + I + YF +I+ + D KP
Sbjct: 102 FMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDTGTIKPS 161
Query: 262 PEMFVYAAQLLKFIPERCIVF-GNSNQTVEAAHDA 295
PE + A + P + + F G+S +++A +A
Sbjct: 162 PEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEA 196
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 215 LMHYKIPMALVSTHPRKTLETAIDSIGIEEYFT-AIVAAEDV--HRGKPDPEMFVYAAQL 271
L P + S L+ + +G++ YF I +A+D+ R KP P++F++ A
Sbjct: 96 LSRLTTPRCICSNSSSHRLDXXLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQ 155
Query: 272 LKFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVY 309
P+R +V +S + A A + + Y
Sbjct: 156 FGVSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHTY 193
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIV 281
+A+VS + + +D + + YF IV + KP P + ++L PE+ ++
Sbjct: 100 LAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALI 159
Query: 282 FGNSNQTVEAAHDARMKC 299
G+++ +EA A K
Sbjct: 160 VGDTDADIEAGKRAGTKT 177
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIV 281
+A+VS + + +D + + YF IV + KP P + ++L PE+ ++
Sbjct: 102 LAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALI 161
Query: 282 FGNSNQTVEAAHDARMKC 299
G+++ +EA A K
Sbjct: 162 VGDTDADIEAGKRAGTKT 179
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 224 LVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFG 283
+ TH T + +G+E YFT I+ ++ KP PE Y + + G
Sbjct: 105 FIYTHKGNNAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIG 164
Query: 284 NSNQTVEAAHDARMKCV 300
+ VE A ++ ++ +
Sbjct: 165 DRTLDVEFAQNSGIQSI 181
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV +
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNT 211
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV +
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNT 211
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 43/83 (51%)
Query: 220 IPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERC 279
+ + L S+ + + A++ ++ +F +++ E+ KP+PE+++ A + L R
Sbjct: 106 LEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRA 165
Query: 280 IVFGNSNQTVEAAHDARMKCVAV 302
++ +S + + A A ++ A+
Sbjct: 166 LIIEDSEKGIAAGVAADVEVWAI 188
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV +
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNT 211
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV +
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNT 211
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV +
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNT 211
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAV 302
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 249 IVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAV 302
+V A DV GKP+PE ++ A + + +V N+ VEA H A + +AV
Sbjct: 156 MVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 241 GIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCV 300
G+ YF I +AE V KP P+++ Y + E +V N+ + A +A M+ +
Sbjct: 115 GLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG-AKEAFLVSSNAFDVI-GAKNAGMRSI 172
Query: 301 AVASKHPVYE--LGAADLVVRHLDEL 324
V K+ + + G D++V EL
Sbjct: 173 FVNRKNTIVDPIGGKPDVIVNDFKEL 198
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 240 IGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNS-NQTVEAAHDARMK 298
+G+ +YF + AED+ GKPDP F+ A + K + G+ + + A A M+
Sbjct: 136 LGLADYFAFALCAEDLGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMR 195
Query: 299 CV 300
+
Sbjct: 196 AI 197
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 241 GIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCV 300
G+ YF I +AE V KP P+++ Y + E +V N+ + A +A M+ +
Sbjct: 110 GLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG-AKEAFLVSSNAFDVI-GAKNAGMRSI 167
Query: 301 AVASKHPVYE--LGAADLVVRHLDEL 324
V K+ + + G D++V EL
Sbjct: 168 FVNRKNTIVDPIGGKPDVIVNDFKEL 193
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 249 IVAAEDVHRG-KPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAH 293
++ D++R KPDP+ ++ AQ+L P ++ N +EAAH
Sbjct: 158 VIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAH 203
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIV 281
+ +V++ R LE+ S ++A+D + KPDP + A + + P+ +
Sbjct: 101 LGIVTSQRRNELESGXRSYPFXXRXAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALF 160
Query: 282 FGNS---NQTVEAAH 293
G+S QT +AA+
Sbjct: 161 IGDSVSDEQTAQAAN 175
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 250 VAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 304
V A DV GKP+PE ++ A + F P +V N+ V+A A + +AV +
Sbjct: 156 VTAFDVKYGKPNPEPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNT 210
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIP-ERCI 280
+A++S + L+ A+ + ++ + ++A+D+ KPDP ++ +A L P E C
Sbjct: 124 VAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCF 183
Query: 281 VFGNS 285
V N+
Sbjct: 184 VSSNA 188
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIP-ERCI 280
+A++S + L+ A+ + ++ + ++A+D+ KPDP ++ +A L P E C
Sbjct: 124 VAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCF 183
Query: 281 VFGNS 285
V N+
Sbjct: 184 VSSNA 188
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 22/209 (10%)
Query: 115 GCGWLGAIFEWEGVIIEDNPDLEKQAWLTLAQEEGKSPPPAFILRRIEGMKNEQAISEVL 174
G + AIF+ +G I++ + DL Q + ++ G A++ L
Sbjct: 1 GXKYKAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRAL 60
Query: 175 CW----SRDP-------------AELRRMASRMEEIYQALQGGIYRLRTGS----KEFVN 213
+ SR+ A + +R+ E+++ +++TG +
Sbjct: 61 AYEAGSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPFPGILDLXK 120
Query: 214 ILMHYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLK 273
L + +A+VS P + ++ ++ + + A+ + R KP P+ ++L
Sbjct: 121 NLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRR-KPAPDXTSECVKVLG 179
Query: 274 FIPERCIVFGNSNQTVEAAHDARMKCVAV 302
++C+ G+S ++ A ++ +AV
Sbjct: 180 VPRDKCVYIGDSEIDIQTARNSEXDEIAV 208
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 222 MALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYA 268
+ ++S R+ S G++ YF I+ +ED+ KP PE+F +A
Sbjct: 125 LYILSNGFRELQSRKXRSAGVDRYFKKIILSEDLGVLKPRPEIFHFA 171
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 217 HYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLL 272
HYK + ++S R + + +G+E F I+ A+DV KP+P F Y L
Sbjct: 114 HYK--LVILSNIDRNEFKLSNAKLGVE--FDHIITAQDVGSYKPNPNNFTYMIDAL 165
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 204 LRTGSKEFVNILMHYKIPMALVST-HPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDP 262
L + EF+ L +ALVS PR ++T ++ +++YF A+ + ++ KP+P
Sbjct: 96 LYDDTLEFLEGLKSNGYKLALVSNASPR--VKTLLEKFDLKKYFDALALSYEIKAVKPNP 153
Query: 263 EMFVYA 268
++F +A
Sbjct: 154 KIFGFA 159
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 219 KIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPER 278
K + ++ + L +D++GI++ F +I +E+ KP P +F A + E
Sbjct: 115 KYHVGXITDSDTEYLXAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEE 174
Query: 279 CIVFGNS 285
+ G++
Sbjct: 175 AVYVGDN 181
>pdb|2FI1|A Chain A, The Crystal Structure Of A Hydrolase From Streptococcus
Pneumoniae Tigr4
Length = 190
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 224 LVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFG 283
LVS + LE ++ I YFT +V + + KP+PE +Y + K+ +V G
Sbjct: 103 LVSHRNDQVLEI-LEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLRE--KYQISSGLVIG 159
Query: 284 NSNQTVEAAHDARMKC 299
+ +EA A +
Sbjct: 160 DRPIDIEAGQAAGLDT 175
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 212 VNILMHYKIPMALVST---HPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVYA 268
VN+L IP + +T +P + AI G+ +I+ + GKPD + F +A
Sbjct: 154 VNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATXIESILGRRFIRFGKPDSQXFXFA 213
Query: 269 AQLLK 273
L+
Sbjct: 214 YDXLR 218
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 185 RMASRMEEIYQALQGGIYRLRTGSKEFVNIL--MHYKIPMALVSTHPRKTLETAIDSIGI 242
RM+ R E+Y E V +L + K + +++ + +D++GI
Sbjct: 93 RMSQRYGELYP--------------EVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGI 138
Query: 243 EEYFTAIVAAEDVHRGKPDPEMFVYAAQLLKFIPERCIVFGNS 285
++ F +I +E+ KP P +F A + E + G++
Sbjct: 139 KDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVGDN 181
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 210 EFVNIL--MHYKIPMALVSTHPRKTLETAIDSIGIEEYFTAIVAAEDVHRGKPDPEMFVY 267
E V +L + K + ++ + +D++GI++ F +I +E+ KP P +F
Sbjct: 104 EVVEVLKSLKGKYHVGXITDSDTEQAXAFLDALGIKDLFDSITTSEEAGFFKPHPRIFEL 163
Query: 268 AAQLLKFIPERCIVFGNS 285
A + E + G++
Sbjct: 164 ALKKAGVKGEEAVYVGDN 181
>pdb|1D4V|B Chain B, Crystal Structure Of Trail-Dr5 Complex
Length = 163
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 175 CWSRDPAELRRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPM 222
CWS+D AE +Y QGGI+ L+ + FV++ + I M
Sbjct: 112 CWSKD-AEY--------GLYSIYQGGIFELKENDRIFVSVTNEHLIDM 150
>pdb|1DG6|A Chain A, Crystal Structure Of Apo2lTRAIL
Length = 191
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 175 CWSRDPAELRRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPM 222
CWS+D AE +Y QGGI+ L+ + FV++ + I M
Sbjct: 140 CWSKD-AEY--------GLYSIYQGGIFELKENDRIFVSVTNEHLIDM 178
>pdb|1D0G|A Chain A, Crystal Structure Of Death Receptor 5 (Dr5) Bound To
Apo2lTRAIL
pdb|1D0G|B Chain B, Crystal Structure Of Death Receptor 5 (Dr5) Bound To
Apo2lTRAIL
pdb|1D0G|D Chain D, Crystal Structure Of Death Receptor 5 (Dr5) Bound To
Apo2lTRAIL
pdb|1DU3|D Chain D, Crystal Structure Of Trail-Sdr5
pdb|1DU3|E Chain E, Crystal Structure Of Trail-Sdr5
pdb|1DU3|F Chain F, Crystal Structure Of Trail-Sdr5
pdb|1DU3|J Chain J, Crystal Structure Of Trail-Sdr5
pdb|1DU3|K Chain K, Crystal Structure Of Trail-Sdr5
pdb|1DU3|L Chain L, Crystal Structure Of Trail-Sdr5
pdb|1D2Q|A Chain A, Crystal Structure Of Human Trail
pdb|1D2Q|B Chain B, Crystal Structure Of Human Trail
Length = 168
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 175 CWSRDPAELRRMASRMEEIYQALQGGIYRLRTGSKEFVNILMHYKIPM 222
CWS+D AE +Y QGGI+ L+ + FV++ + I M
Sbjct: 117 CWSKD-AEY--------GLYSIYQGGIFELKENDRIFVSVTNEHLIDM 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,755,363
Number of Sequences: 62578
Number of extensions: 427719
Number of successful extensions: 903
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 53
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)