BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043740
(718 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 374 LQQKLDDMQTKKGQLDSQIAREKGECPESRTEL---EQRNIKLTNK---IANQQKIMKNQ 427
+L D++ K Q++S++ R K + + EL E + LT + + NQ K + N
Sbjct: 1578 FNSRLADLEYHKSQVESELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNI 1637
Query: 428 EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKL 462
+D +++ + +++LED +A QK K + +TVE L
Sbjct: 1638 KDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESL 1672
>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2
Length = 1605
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 128/281 (45%), Gaps = 70/281 (24%)
Query: 112 VSELRNKLMST-------SEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISAL 164
V+EL +KL S+ EE ++L+ + +EA AEN + ER R I AL
Sbjct: 1118 VAELHSKLQSSEVEVKSKCEELSSLHGQLKEAR-----AEN------SQLTERIRSIEAL 1166
Query: 165 VKVHESHGNRAS--------ARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGE 216
++ ++ +AS R+KELE QVS L+ E L K +E Q
Sbjct: 1167 LEAGQAQDTQASHAEANQQQTRLKELESQVSCLEKETSEL---KEAMEQQKG-------- 1215
Query: 217 KNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQK--NELQL-LLKGKTKEI------- 266
KN +L E+ + + L + ++ L SLT K +E QL L + +TKE
Sbjct: 1216 KNNDLR--EKNWKAMEALALAERACEEKLRSLTQAKEESEKQLHLAEAQTKETLLALLPG 1273
Query: 267 ---------SEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKD-------LESLCNQ 310
+E+L + K EL KK L+ D ++++++ L++ C+Q
Sbjct: 1274 LSISAHQNYAEWLQEFKEKGSELLKKPPT----LEPSMDIVLKLREAEETQNSLQAECDQ 1329
Query: 311 KKKLEEEIDGKIEDARQSREENDRLL-AKISQTENELSAFR 350
+ + E +G ++D ++S EE +R+ AK+ E EL R
Sbjct: 1330 YRTILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSR 1370
>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2
Length = 3210
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 91/177 (51%), Gaps = 22/177 (12%)
Query: 112 VSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA--LVKVHE 169
V EL+ + SE+ + ++QE L +++ +E +N L AD+ RE + KV++
Sbjct: 1928 VGELKKENSDLSEKLEYFSCDHQELLQRVETSEGLNSDLEMHADKSSREDIGDNVAKVND 1987
Query: 170 SHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF-ATEAKQLGEKNIELHAQEQAT 228
S R ++E ++SR++ E S+ + LEA + ++L E+
Sbjct: 1988 S----WKERFLDVENELSRIRSEKASIEHEALYLEADLEVVQTEKL--------CLEKDN 2035
Query: 229 EQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSE 285
E + ++V ++++L +TS++N+ L+G+ +S+ T L L E++K+K++
Sbjct: 2036 ENKQKVIV---CLEEELSVVTSERNQ----LRGELDTMSKKTTALDQLSEKMKEKTQ 2085
>sp|Q05870|MYSP_SCHJA Paramyosin OS=Schistosoma japonicum PE=2 SV=2
Length = 866
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 573 LANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKL---------------DRMEE 617
LA+ L + D+L N +T NN +S ++KSLV L D+++E
Sbjct: 368 LASELQRRVDELTIEVNTLTSQNNQLESENMRLKSLVNDLTDKNNALERENRQMNDQVKE 427
Query: 618 QESFLRE---EISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTL-GE 673
+S LR+ +++ EA + ++ N+ + + E+ + +++++ + A L L E
Sbjct: 428 LKSSLRDANRRLTDLEALRSQLEAERDNLASALHDAEEALRDMDQKYQASQAALNHLKSE 487
Query: 674 LENKIKQQDAELLSLGEEKREAIRQLCVFI 703
+E +++++D EL SL + I +L V I
Sbjct: 488 MEQRLRERDEELESLRKSTTRTIEELTVTI 517
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3
Length = 1976
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 147/313 (46%), Gaps = 46/313 (14%)
Query: 179 IKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQA 238
I EL+ Q+ LKL+L K++ E Q A L + E + A + VR L Q
Sbjct: 1071 IAELQAQIDELKLQLA-----KKEEELQGA-----LARGDDETLHKNNALKVVRELQAQI 1120
Query: 239 NVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFL 298
+Q+D S + +N+ + + +++SE L LKT E+ + + +L +RE
Sbjct: 1121 AELQEDFESEKASRNKAE----KQKRDLSEELEALKTELEDTLDTTAAQQELRTKRE--- 1173
Query: 299 MRVKDLESLCNQKKKLEEEI---DGKIEDARQSREENDRLLAKISQTENEL-SAFRRKIA 354
+ + KK LEEE + +I+D RQ R + + +L A R K
Sbjct: 1174 ------QEVAELKKALEEETKNHEAQIQDMRQ------RHATALEELSEQLEQAKRFKAN 1221
Query: 355 VQEN----EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPES---RTELE 407
+++N E + LA + KV LQQ + + K+ +LD+Q+ + E R EL
Sbjct: 1222 LEKNKQGLETDNKELACEVKV--LQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELA 1279
Query: 408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESK 467
++ KL N++ N +++ E K K +LE ++ D Q+++ QE+T +KL S+
Sbjct: 1280 EKASKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELL--QEETRQKLNLSSR 1337
Query: 468 QAKRQILGSKTSL 480
RQ+ K SL
Sbjct: 1338 --IRQLEEEKNSL 1348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.315
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,870,092
Number of Sequences: 539616
Number of extensions: 9311346
Number of successful extensions: 96310
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 4633
Number of HSP's that attempted gapping in prelim test: 60104
Number of HSP's gapped (non-prelim): 18777
length of query: 718
length of database: 191,569,459
effective HSP length: 125
effective length of query: 593
effective length of database: 124,117,459
effective search space: 73601653187
effective search space used: 73601653187
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)