Query 043740
Match_columns 718
No_of_seqs 437 out of 1561
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.9 1.9E-13 4.2E-18 164.5 89.4 453 226-687 1038-1576(1930)
2 KOG0161 Myosin class II heavy 99.8 2E-12 4.3E-17 155.9 84.8 139 4-150 958-1102(1930)
3 TIGR02169 SMC_prok_A chromosom 99.8 7.4E-11 1.6E-15 146.7 91.9 43 671-717 953-995 (1164)
4 COG1196 Smc Chromosome segrega 99.8 4.3E-11 9.3E-16 145.8 83.8 41 673-717 946-986 (1163)
5 PF07765 KIP1: KIP1-like prote 99.8 8E-20 1.7E-24 137.6 4.6 55 1-55 16-74 (74)
6 TIGR02168 SMC_prok_B chromosom 99.8 2.7E-10 6E-15 141.9 91.5 128 575-717 866-1002(1179)
7 TIGR02168 SMC_prok_B chromosom 99.7 2.9E-08 6.3E-13 123.8 86.2 139 572-717 870-1009(1179)
8 KOG4674 Uncharacterized conser 99.5 5.5E-07 1.2E-11 108.0 92.8 101 345-445 941-1041(1822)
9 PRK03918 chromosome segregatio 99.5 6E-07 1.3E-11 108.1 79.4 49 359-407 395-446 (880)
10 PRK02224 chromosome segregatio 99.5 7.4E-07 1.6E-11 107.2 80.4 32 362-393 412-443 (880)
11 PRK02224 chromosome segregatio 99.5 9.3E-07 2E-11 106.3 82.1 25 31-56 149-173 (880)
12 PRK03918 chromosome segregatio 99.5 1E-06 2.2E-11 106.1 80.1 20 139-158 208-227 (880)
13 PF10174 Cast: RIM-binding pro 99.4 1.2E-06 2.5E-11 99.5 66.0 110 92-207 56-165 (775)
14 KOG4674 Uncharacterized conser 99.4 4.1E-06 8.9E-11 100.7 83.4 91 568-658 1243-1341(1822)
15 KOG0996 Structural maintenance 99.4 4E-06 8.6E-11 95.4 75.7 41 674-714 1076-1116(1293)
16 TIGR00606 rad50 rad50. This fa 99.3 1.2E-05 2.5E-10 100.1 88.5 105 100-204 416-528 (1311)
17 TIGR00606 rad50 rad50. This fa 99.3 1.8E-05 3.9E-10 98.4 91.1 45 402-446 823-867 (1311)
18 KOG0964 Structural maintenance 99.3 7E-06 1.5E-10 91.4 69.7 63 93-155 255-317 (1200)
19 PF10174 Cast: RIM-binding pro 99.3 1.2E-05 2.5E-10 91.6 70.3 125 367-495 285-409 (775)
20 PRK04778 septation ring format 99.2 1.1E-05 2.3E-10 91.2 50.5 130 575-716 355-491 (569)
21 COG1196 Smc Chromosome segrega 99.1 0.00012 2.6E-09 90.0 88.7 27 689-715 1001-1027(1163)
22 PF01576 Myosin_tail_1: Myosin 99.1 1.6E-11 3.5E-16 143.3 0.0 55 404-458 429-483 (859)
23 PF01576 Myosin_tail_1: Myosin 99.1 1.7E-11 3.6E-16 143.1 0.0 335 360-703 157-534 (859)
24 PRK01156 chromosome segregatio 99.1 0.00017 3.7E-09 87.0 80.3 49 359-407 413-463 (895)
25 KOG0018 Structural maintenance 98.7 0.0014 2.9E-08 74.9 68.4 102 436-542 697-802 (1141)
26 PF12128 DUF3584: Protein of u 98.7 0.0042 9.1E-08 76.8 80.2 61 144-204 280-340 (1201)
27 KOG0933 Structural maintenance 98.6 0.0025 5.4E-08 72.2 68.4 139 572-714 854-1000(1174)
28 KOG0996 Structural maintenance 98.6 0.0035 7.5E-08 72.3 73.6 68 139-206 441-508 (1293)
29 KOG4643 Uncharacterized coiled 98.6 0.003 6.5E-08 71.5 56.4 112 92-207 173-287 (1195)
30 PF00038 Filament: Intermediat 98.5 0.0026 5.6E-08 66.7 40.6 78 125-205 5-82 (312)
31 PF07888 CALCOCO1: Calcium bin 98.4 0.0049 1.1E-07 67.0 46.6 45 108-152 148-192 (546)
32 PF12128 DUF3584: Protein of u 98.4 0.016 3.4E-07 71.8 81.6 12 11-22 199-210 (1201)
33 PF07888 CALCOCO1: Calcium bin 98.3 0.0091 2E-07 64.9 47.6 56 108-163 155-210 (546)
34 KOG0977 Nuclear envelope prote 98.3 0.011 2.5E-07 64.2 37.6 39 437-475 350-388 (546)
35 PF00261 Tropomyosin: Tropomyo 98.3 0.0064 1.4E-07 60.6 32.3 15 146-160 37-51 (237)
36 KOG0971 Microtubule-associated 98.2 0.021 4.6E-07 64.0 40.0 210 175-391 323-554 (1243)
37 PF00261 Tropomyosin: Tropomyo 98.2 0.0053 1.1E-07 61.2 29.8 6 244-249 37-42 (237)
38 PF05483 SCP-1: Synaptonemal c 98.1 0.025 5.4E-07 61.8 85.0 57 87-143 90-146 (786)
39 KOG0964 Structural maintenance 98.0 0.059 1.3E-06 61.3 73.5 41 670-714 950-990 (1200)
40 KOG0971 Microtubule-associated 98.0 0.056 1.2E-06 60.8 45.9 103 312-420 279-387 (1243)
41 PF00038 Filament: Intermediat 97.9 0.041 9E-07 57.6 41.3 79 311-389 6-88 (312)
42 PRK04778 septation ring format 97.9 0.082 1.8E-06 60.0 58.1 55 227-281 103-157 (569)
43 KOG4643 Uncharacterized coiled 97.9 0.1 2.2E-06 59.7 57.7 54 226-279 174-227 (1195)
44 KOG0977 Nuclear envelope prote 97.9 0.073 1.6E-06 58.1 38.7 58 407-464 147-204 (546)
45 KOG0976 Rho/Rac1-interacting s 97.8 0.086 1.9E-06 58.5 65.3 15 672-686 617-631 (1265)
46 KOG0995 Centromere-associated 97.7 0.1 2.3E-06 56.3 47.5 66 138-207 259-324 (581)
47 PF05701 WEMBL: Weak chloropla 97.7 0.13 2.9E-06 57.5 65.2 44 104-147 35-78 (522)
48 PHA02562 46 endonuclease subun 97.7 0.053 1.1E-06 62.0 30.6 19 181-199 217-235 (562)
49 PF05557 MAD: Mitotic checkpoi 97.6 2.9E-05 6.3E-10 90.6 3.2 31 672-702 609-639 (722)
50 PRK04863 mukB cell division pr 97.6 0.4 8.6E-06 59.9 81.5 32 312-343 568-599 (1486)
51 KOG0933 Structural maintenance 97.6 0.24 5.3E-06 56.8 74.3 17 8-24 188-204 (1174)
52 PHA02562 46 endonuclease subun 97.5 0.13 2.8E-06 58.9 31.5 13 408-420 386-398 (562)
53 KOG0250 DNA repair protein RAD 97.5 0.32 6.9E-06 56.8 68.4 14 695-708 1016-1029(1074)
54 PF06160 EzrA: Septation ring 97.5 0.28 6E-06 55.6 53.4 85 112-202 77-161 (560)
55 PF05557 MAD: Mitotic checkpoi 97.4 0.00046 1E-08 80.6 9.4 21 368-388 405-425 (722)
56 PF05701 WEMBL: Weak chloropla 97.4 0.41 8.8E-06 53.7 68.7 29 586-614 485-513 (522)
57 PRK11637 AmiB activator; Provi 97.3 0.34 7.3E-06 53.2 30.2 52 104-155 55-106 (428)
58 KOG0976 Rho/Rac1-interacting s 97.3 0.47 1E-05 53.0 65.2 45 409-453 352-396 (1265)
59 PF14662 CCDC155: Coiled-coil 97.2 0.17 3.7E-06 47.1 27.8 80 314-394 20-99 (193)
60 PRK11637 AmiB activator; Provi 97.1 0.39 8.5E-06 52.6 27.9 18 188-205 44-61 (428)
61 COG1340 Uncharacterized archae 97.1 0.38 8.2E-06 48.3 37.6 28 323-350 221-248 (294)
62 KOG0995 Centromere-associated 97.1 0.67 1.5E-05 50.4 47.2 24 34-57 96-119 (581)
63 PRK04863 mukB cell division pr 97.0 1.6 3.5E-05 54.7 79.5 40 349-388 559-598 (1486)
64 PF09726 Macoilin: Transmembra 97.0 1 2.2E-05 52.0 30.7 97 105-201 420-519 (697)
65 PF12718 Tropomyosin_1: Tropom 97.0 0.24 5.2E-06 44.9 20.9 43 306-348 77-119 (143)
66 COG1579 Zn-ribbon protein, pos 97.0 0.37 8E-06 47.2 23.1 44 312-355 106-149 (239)
67 PF05483 SCP-1: Synaptonemal c 97.0 0.86 1.9E-05 50.4 84.5 30 105-134 171-200 (786)
68 KOG4593 Mitotic checkpoint pro 97.0 0.9 2E-05 50.5 68.1 52 171-222 159-210 (716)
69 PF15070 GOLGA2L5: Putative go 97.0 1 2.2E-05 51.1 51.2 19 522-540 432-450 (617)
70 PF09726 Macoilin: Transmembra 96.9 1.2 2.7E-05 51.3 32.6 22 149-170 422-443 (697)
71 KOG1029 Endocytic adaptor prot 96.9 1.1 2.3E-05 50.2 37.6 85 306-394 420-504 (1118)
72 KOG0994 Extracellular matrix g 96.8 1.6 3.4E-05 51.1 56.2 33 626-658 1691-1723(1758)
73 KOG0612 Rho-associated, coiled 96.8 1.7 3.7E-05 51.4 47.7 27 437-463 750-776 (1317)
74 PF05622 HOOK: HOOK protein; 96.8 0.00032 6.9E-09 81.8 0.0 30 100-129 250-279 (713)
75 KOG0250 DNA repair protein RAD 96.7 2 4.4E-05 50.4 73.2 108 175-282 300-412 (1074)
76 KOG4673 Transcription factor T 96.7 1.5 3.2E-05 48.5 65.3 34 174-207 406-439 (961)
77 KOG0994 Extracellular matrix g 96.7 2.1 4.5E-05 50.2 52.5 65 100-164 1229-1293(1758)
78 PF05622 HOOK: HOOK protein; 96.6 0.0005 1.1E-08 80.2 0.0 19 39-57 68-86 (713)
79 PF05667 DUF812: Protein of un 96.6 1.8 3.9E-05 48.9 38.2 107 100-214 325-431 (594)
80 COG5185 HEC1 Protein involved 96.6 1.2 2.7E-05 46.8 40.9 67 137-207 294-360 (622)
81 PF14915 CCDC144C: CCDC144C pr 96.4 1.3 2.7E-05 44.4 42.6 46 402-447 215-260 (305)
82 KOG0946 ER-Golgi vesicle-tethe 96.1 3.3 7.1E-05 47.0 30.4 58 98-155 659-716 (970)
83 PF08614 ATG16: Autophagy prot 96.0 0.12 2.5E-06 49.9 12.4 101 100-204 78-178 (194)
84 COG0419 SbcC ATPase involved i 95.9 6.2 0.00013 47.9 81.8 11 397-407 458-468 (908)
85 KOG0946 ER-Golgi vesicle-tethe 95.9 4.4 9.5E-05 46.0 31.5 71 95-165 649-719 (970)
86 PF14662 CCDC155: Coiled-coil 95.9 1.6 3.4E-05 40.9 28.3 27 366-392 113-139 (193)
87 PF06160 EzrA: Septation ring 95.8 4.7 0.0001 45.8 63.7 54 228-281 100-153 (560)
88 COG4942 Membrane-bound metallo 95.7 3.5 7.6E-05 43.8 25.7 28 366-393 200-227 (420)
89 COG4477 EzrA Negative regulato 95.7 3.9 8.5E-05 44.3 52.4 59 227-285 102-160 (570)
90 PF14915 CCDC144C: CCDC144C pr 95.7 2.7 5.8E-05 42.1 41.8 73 359-431 88-160 (305)
91 PF04849 HAP1_N: HAP1 N-termin 95.5 3.2 7E-05 42.2 24.2 118 325-446 169-286 (306)
92 PF05667 DUF812: Protein of un 95.5 5.9 0.00013 44.9 37.6 36 363-398 448-483 (594)
93 PF15070 GOLGA2L5: Putative go 95.3 6.8 0.00015 44.6 56.0 46 605-650 416-461 (617)
94 PRK09039 hypothetical protein; 95.2 4.9 0.00011 42.4 23.5 19 109-127 45-63 (343)
95 PRK09039 hypothetical protein; 95.2 4.9 0.00011 42.4 23.7 10 363-372 173-182 (343)
96 PF09755 DUF2046: Uncharacteri 95.1 4.4 9.6E-05 41.1 38.8 150 98-266 29-179 (310)
97 KOG0612 Rho-associated, coiled 95.0 11 0.00024 45.1 49.4 38 402-439 743-780 (1317)
98 PF10473 CENP-F_leu_zip: Leuci 94.9 2.6 5.7E-05 37.7 20.6 39 312-350 69-107 (140)
99 PF15619 Lebercilin: Ciliary p 94.8 4 8.6E-05 39.1 26.0 28 230-257 13-40 (194)
100 KOG0963 Transcription factor/C 94.7 8.8 0.00019 42.5 44.6 44 338-381 293-336 (629)
101 KOG0963 Transcription factor/C 94.6 9.1 0.0002 42.4 43.6 70 326-395 199-268 (629)
102 PF09728 Taxilin: Myosin-like 94.4 7.2 0.00016 40.5 38.7 65 97-161 30-94 (309)
103 PF07111 HCR: Alpha helical co 93.7 15 0.00032 41.5 58.4 104 402-505 472-583 (739)
104 PF09730 BicD: Microtubule-ass 93.6 17 0.00038 41.8 68.9 61 100-160 31-91 (717)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.1 6.2 0.00013 35.3 20.5 68 325-392 61-128 (132)
106 COG4372 Uncharacterized protei 93.0 13 0.00027 38.6 31.2 23 325-347 261-283 (499)
107 PF15619 Lebercilin: Ciliary p 93.0 8.8 0.00019 36.8 25.4 28 229-256 68-95 (194)
108 PF04849 HAP1_N: HAP1 N-termin 92.5 14 0.0003 37.8 24.7 25 235-259 226-250 (306)
109 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.4 7.8 0.00017 34.6 19.5 21 359-379 109-129 (132)
110 KOG0978 E3 ubiquitin ligase in 91.9 28 0.0006 39.9 73.8 55 108-162 53-107 (698)
111 COG4026 Uncharacterized protei 91.6 2.2 4.8E-05 40.4 10.4 82 576-657 129-210 (290)
112 PF05010 TACC: Transforming ac 91.4 14 0.00031 35.6 29.5 19 332-350 163-181 (207)
113 TIGR03185 DNA_S_dndD DNA sulfu 91.4 34 0.00073 39.8 40.0 19 181-199 266-284 (650)
114 PF08317 Spc7: Spc7 kinetochor 91.3 21 0.00046 37.5 29.6 11 148-158 78-88 (325)
115 PF08614 ATG16: Autophagy prot 91.3 1.8 3.9E-05 41.7 10.2 56 108-163 72-127 (194)
116 COG4942 Membrane-bound metallo 90.9 25 0.00055 37.6 32.1 19 326-344 227-245 (420)
117 COG3883 Uncharacterized protei 90.8 19 0.00041 35.9 26.2 61 106-166 34-94 (265)
118 PF10481 CENP-F_N: Cenp-F N-te 90.5 19 0.00042 35.6 18.1 28 309-336 162-189 (307)
119 COG0419 SbcC ATPase involved i 90.3 51 0.0011 40.1 82.5 16 105-120 180-195 (908)
120 PF05010 TACC: Transforming ac 90.3 18 0.00039 34.9 29.1 44 408-451 69-112 (207)
121 PF09728 Taxilin: Myosin-like 90.0 26 0.00057 36.3 39.9 36 619-654 239-274 (309)
122 PF09730 BicD: Microtubule-ass 89.8 44 0.00096 38.7 68.5 76 572-647 630-712 (717)
123 KOG1853 LIS1-interacting prote 89.5 21 0.00047 34.7 22.1 34 172-205 47-80 (333)
124 PF13851 GAS: Growth-arrest sp 88.7 24 0.00052 34.1 26.5 67 449-515 92-158 (201)
125 KOG0804 Cytoplasmic Zn-finger 88.6 28 0.00061 37.1 16.6 95 110-204 347-441 (493)
126 PF12325 TMF_TATA_bd: TATA ele 88.5 16 0.00035 31.9 15.5 33 227-259 21-53 (120)
127 KOG0980 Actin-binding protein 87.8 61 0.0013 37.7 39.7 35 320-354 491-525 (980)
128 COG5185 HEC1 Protein involved 86.7 49 0.0011 35.5 43.5 18 181-198 268-285 (622)
129 KOG0980 Actin-binding protein 86.3 74 0.0016 37.1 43.3 33 175-207 415-447 (980)
130 PF04111 APG6: Autophagy prote 86.1 17 0.00038 37.8 13.8 90 402-491 44-133 (314)
131 PF10498 IFT57: Intra-flagella 84.9 57 0.0012 34.6 17.4 55 367-421 292-348 (359)
132 PF10498 IFT57: Intra-flagella 84.7 50 0.0011 35.0 16.5 47 235-281 219-265 (359)
133 PF11559 ADIP: Afadin- and alp 84.6 32 0.00069 31.5 14.1 58 100-157 63-120 (151)
134 PF09304 Cortex-I_coil: Cortex 84.4 24 0.00051 29.8 12.5 48 575-622 16-63 (107)
135 KOG1003 Actin filament-coating 83.9 39 0.00084 31.9 27.1 38 230-267 110-147 (205)
136 KOG0962 DNA repair protein RAD 83.7 1.2E+02 0.0026 37.4 80.5 27 135-161 265-291 (1294)
137 PF09789 DUF2353: Uncharacteri 82.9 62 0.0013 33.5 31.6 43 226-268 137-179 (319)
138 PF09789 DUF2353: Uncharacteri 82.4 65 0.0014 33.4 25.7 34 361-394 78-111 (319)
139 PF10168 Nup88: Nuclear pore c 81.0 1.1E+02 0.0025 35.8 19.0 27 234-260 577-603 (717)
140 KOG1003 Actin filament-coating 80.7 52 0.0011 31.1 26.5 74 308-385 108-181 (205)
141 PF12329 TMF_DNA_bd: TATA elem 80.2 27 0.00059 27.6 10.1 35 316-350 5-39 (74)
142 PF09304 Cortex-I_coil: Cortex 79.8 36 0.00078 28.7 14.3 71 572-642 6-76 (107)
143 TIGR00634 recN DNA repair prot 78.8 1.3E+02 0.0027 34.4 26.1 40 127-166 164-203 (563)
144 PF10146 zf-C4H2: Zinc finger- 78.7 71 0.0015 31.5 16.4 28 323-350 46-73 (230)
145 PF08317 Spc7: Spc7 kinetochor 78.6 91 0.002 32.7 28.4 33 363-395 164-196 (325)
146 COG2433 Uncharacterized conser 78.5 55 0.0012 36.5 14.2 84 311-395 424-507 (652)
147 KOG0804 Cytoplasmic Zn-finger 78.4 78 0.0017 33.9 14.8 46 584-629 349-394 (493)
148 PF04111 APG6: Autophagy prote 78.3 58 0.0013 33.9 14.2 79 313-395 54-132 (314)
149 KOG4809 Rab6 GTPase-interactin 78.1 1.1E+02 0.0025 33.5 27.8 226 99-360 327-565 (654)
150 COG4026 Uncharacterized protei 77.6 35 0.00076 32.6 10.9 40 242-281 141-180 (290)
151 COG4477 EzrA Negative regulato 77.4 1.2E+02 0.0026 33.4 52.1 20 148-167 167-186 (570)
152 PF07111 HCR: Alpha helical co 77.0 1.4E+02 0.0031 34.0 69.0 13 117-129 73-85 (739)
153 KOG1937 Uncharacterized conser 76.7 1.1E+02 0.0024 32.7 36.3 44 155-198 278-321 (521)
154 PF10481 CENP-F_N: Cenp-F N-te 76.0 88 0.0019 31.2 19.2 58 415-472 67-124 (307)
155 PF10212 TTKRSYEDQ: Predicted 75.6 84 0.0018 34.6 14.6 96 108-203 418-513 (518)
156 KOG4360 Uncharacterized coiled 75.4 1.3E+02 0.0028 32.8 18.3 41 235-275 260-300 (596)
157 PF13514 AAA_27: AAA domain 74.5 2.3E+02 0.0051 35.4 80.1 23 177-199 249-271 (1111)
158 PRK15422 septal ring assembly 74.3 41 0.0009 26.6 10.6 58 360-421 9-66 (79)
159 PF10146 zf-C4H2: Zinc finger- 74.2 95 0.002 30.7 16.1 23 322-344 52-74 (230)
160 PRK15422 septal ring assembly 73.9 43 0.00092 26.5 10.2 45 572-616 22-66 (79)
161 TIGR01005 eps_transp_fam exopo 73.5 2E+02 0.0044 34.2 24.6 31 363-393 238-268 (754)
162 PF09755 DUF2046: Uncharacteri 73.4 1.1E+02 0.0025 31.3 37.2 25 370-394 179-203 (310)
163 PF15066 CAGE1: Cancer-associa 70.2 1.6E+02 0.0035 31.7 30.2 48 227-274 388-435 (527)
164 PF04582 Reo_sigmaC: Reovirus 69.6 11 0.00024 38.7 6.2 31 364-394 121-151 (326)
165 KOG0018 Structural maintenance 69.4 2.6E+02 0.0056 33.7 68.2 14 376-389 732-745 (1141)
166 COG4372 Uncharacterized protei 69.0 1.6E+02 0.0034 31.0 32.9 23 108-130 86-108 (499)
167 PF09787 Golgin_A5: Golgin sub 68.9 2E+02 0.0044 32.3 35.2 27 324-350 282-308 (511)
168 TIGR01843 type_I_hlyD type I s 68.7 1.8E+02 0.0039 31.6 23.4 27 181-207 78-104 (423)
169 PF04582 Reo_sigmaC: Reovirus 68.5 12 0.00026 38.5 6.2 33 362-394 63-95 (326)
170 TIGR01843 type_I_hlyD type I s 68.0 1.8E+02 0.004 31.4 24.2 15 331-345 82-96 (423)
171 KOG2991 Splicing regulator [RN 67.6 1.3E+02 0.0028 29.6 23.0 42 240-281 119-160 (330)
172 PF06005 DUF904: Protein of un 67.6 58 0.0013 25.6 10.6 15 104-118 19-33 (72)
173 PF06005 DUF904: Protein of un 67.1 60 0.0013 25.5 10.6 43 583-625 19-61 (72)
174 TIGR03007 pepcterm_ChnLen poly 67.0 2.2E+02 0.0047 31.9 23.4 28 363-390 205-232 (498)
175 PF06785 UPF0242: Uncharacteri 65.9 1.7E+02 0.0036 30.2 21.1 29 231-259 87-115 (401)
176 KOG1853 LIS1-interacting prote 65.0 1.5E+02 0.0032 29.2 23.3 64 327-390 56-119 (333)
177 PF09738 DUF2051: Double stran 65.0 1.7E+02 0.0037 30.2 13.6 61 409-469 99-159 (302)
178 smart00787 Spc7 Spc7 kinetocho 63.3 1.9E+02 0.0042 30.0 29.1 17 374-390 244-260 (312)
179 PF10168 Nup88: Nuclear pore c 62.6 3.1E+02 0.0068 32.2 22.1 17 371-387 648-664 (717)
180 PRK10869 recombination and rep 60.9 3E+02 0.0064 31.4 26.2 38 129-166 162-199 (553)
181 PF04912 Dynamitin: Dynamitin 60.6 2.5E+02 0.0053 30.3 25.9 39 293-331 313-351 (388)
182 PF03962 Mnd1: Mnd1 family; I 60.6 1.6E+02 0.0034 28.1 13.8 37 371-407 105-141 (188)
183 smart00787 Spc7 Spc7 kinetocho 60.5 2.2E+02 0.0047 29.7 27.5 25 371-395 167-191 (312)
184 PF11559 ADIP: Afadin- and alp 59.3 1.4E+02 0.0031 27.2 17.0 23 177-199 101-123 (151)
185 PF06810 Phage_GP20: Phage min 58.6 1.3E+02 0.0029 27.6 10.5 15 683-697 89-103 (155)
186 PF03962 Mnd1: Mnd1 family; I 58.1 1.7E+02 0.0038 27.8 13.3 91 100-191 66-156 (188)
187 PF15450 DUF4631: Domain of un 57.0 3.1E+02 0.0067 30.3 64.2 47 572-618 423-470 (531)
188 PF09738 DUF2051: Double stran 55.1 2.6E+02 0.0056 28.9 17.1 15 39-53 19-33 (302)
189 PF05266 DUF724: Protein of un 54.8 2E+02 0.0043 27.5 14.8 32 314-345 115-146 (190)
190 PF07106 TBPIP: Tat binding pr 54.7 74 0.0016 29.7 8.5 30 321-350 77-106 (169)
191 TIGR02338 gimC_beta prefoldin, 54.7 1.4E+02 0.003 25.6 12.5 29 175-203 72-100 (110)
192 KOG4593 Mitotic checkpoint pro 54.6 3.9E+02 0.0083 30.7 68.7 30 671-700 602-631 (716)
193 PF05377 FlaC_arch: Flagella a 53.9 86 0.0019 23.1 6.6 38 313-350 4-41 (55)
194 TIGR00634 recN DNA repair prot 53.2 3.9E+02 0.0086 30.4 24.3 28 228-255 160-187 (563)
195 PF08581 Tup_N: Tup N-terminal 52.5 1.2E+02 0.0026 24.3 11.0 48 610-657 11-58 (79)
196 PF07106 TBPIP: Tat binding pr 52.3 82 0.0018 29.4 8.4 25 105-129 81-105 (169)
197 KOG4673 Transcription factor T 51.8 4.2E+02 0.0091 30.3 70.8 45 370-414 606-650 (961)
198 COG3074 Uncharacterized protei 51.5 1.1E+02 0.0024 23.5 9.7 25 604-628 47-71 (79)
199 PF06818 Fez1: Fez1; InterPro 51.4 2.3E+02 0.005 27.2 23.7 67 237-303 39-105 (202)
200 PF07058 Myosin_HC-like: Myosi 51.0 1.1E+02 0.0025 30.9 9.2 41 677-718 43-83 (351)
201 PF07989 Microtub_assoc: Micro 50.6 1.3E+02 0.0027 23.9 9.4 68 321-391 5-72 (75)
202 COG1382 GimC Prefoldin, chaper 50.5 1.7E+02 0.0037 25.5 12.6 15 178-192 78-92 (119)
203 PF13870 DUF4201: Domain of un 49.0 2.3E+02 0.005 26.6 23.4 16 108-123 18-33 (177)
204 PF14197 Cep57_CLD_2: Centroso 48.9 1.3E+02 0.0027 23.5 10.2 59 104-162 6-64 (69)
205 PRK10361 DNA recombination pro 48.1 4.2E+02 0.0091 29.3 24.0 21 375-395 139-159 (475)
206 KOG1655 Protein involved in va 47.7 2.5E+02 0.0055 26.6 14.4 83 628-717 67-149 (218)
207 PF14282 FlxA: FlxA-like prote 47.6 1.3E+02 0.0027 25.7 8.0 55 146-200 20-74 (106)
208 PF04102 SlyX: SlyX; InterPro 46.8 1.1E+02 0.0024 23.7 6.9 42 576-617 5-46 (69)
209 KOG1962 B-cell receptor-associ 44.7 1.3E+02 0.0028 29.2 8.3 14 38-51 88-101 (216)
210 KOG0978 E3 ubiquitin ligase in 43.5 5.8E+02 0.013 29.6 74.3 78 577-654 519-596 (698)
211 TIGR01005 eps_transp_fam exopo 42.1 6.6E+02 0.014 29.8 25.9 28 177-204 237-264 (754)
212 KOG0239 Kinesin (KAR3 subfamil 41.0 6.5E+02 0.014 29.4 19.5 72 325-397 243-314 (670)
213 PRK04406 hypothetical protein; 40.9 1.8E+02 0.0039 23.0 7.8 47 573-619 9-55 (75)
214 PF01920 Prefoldin_2: Prefoldi 40.9 2.1E+02 0.0047 23.8 12.4 33 133-165 7-39 (106)
215 PF15066 CAGE1: Cancer-associa 40.4 5.2E+02 0.011 28.1 29.1 18 478-495 485-502 (527)
216 PF08647 BRE1: BRE1 E3 ubiquit 40.3 2.2E+02 0.0047 23.7 12.2 54 571-624 27-80 (96)
217 PF10267 Tmemb_cc2: Predicted 40.1 5.1E+02 0.011 27.9 15.9 48 6-54 25-85 (395)
218 KOG1899 LAR transmembrane tyro 40.0 6E+02 0.013 28.8 21.6 198 113-344 107-309 (861)
219 KOG4603 TBP-1 interacting prot 39.6 3.1E+02 0.0068 25.3 9.4 65 95-159 78-144 (201)
220 PRK02793 phi X174 lysis protei 39.3 1.9E+02 0.0041 22.7 7.5 46 574-619 7-52 (72)
221 PF11932 DUF3450: Protein of u 38.5 4.2E+02 0.009 26.5 15.5 11 675-685 130-140 (251)
222 PRK02119 hypothetical protein; 38.3 2E+02 0.0043 22.7 7.8 46 574-619 8-53 (73)
223 PRK00295 hypothetical protein; 38.0 1.9E+02 0.0041 22.4 7.8 43 576-618 6-48 (68)
224 TIGR03007 pepcterm_ChnLen poly 37.8 6.2E+02 0.013 28.2 24.9 29 176-204 203-231 (498)
225 PF10805 DUF2730: Protein of u 37.5 2.6E+02 0.0056 23.8 9.0 53 598-650 37-91 (106)
226 PRK03947 prefoldin subunit alp 37.1 3.1E+02 0.0067 24.5 13.4 16 367-382 106-121 (140)
227 PRK09343 prefoldin subunit bet 36.7 2.9E+02 0.0063 24.2 13.0 22 176-197 77-98 (121)
228 PRK09343 prefoldin subunit bet 36.4 2.9E+02 0.0064 24.1 13.7 29 177-205 71-99 (121)
229 PF15290 Syntaphilin: Golgi-lo 35.6 4.8E+02 0.01 26.3 13.8 34 241-274 122-155 (305)
230 PF10212 TTKRSYEDQ: Predicted 35.4 6.7E+02 0.014 27.9 22.8 22 36-57 46-67 (518)
231 PRK00736 hypothetical protein; 35.4 2.1E+02 0.0046 22.1 7.5 45 575-619 5-49 (68)
232 PF03915 AIP3: Actin interacti 34.5 6.4E+02 0.014 27.5 18.6 27 408-434 206-232 (424)
233 PF05266 DUF724: Protein of un 34.4 4.2E+02 0.0091 25.3 13.6 49 601-649 129-177 (190)
234 COG3074 Uncharacterized protei 34.0 2.2E+02 0.0047 21.9 10.0 20 599-618 49-68 (79)
235 PF02183 HALZ: Homeobox associ 34.0 1.7E+02 0.0037 20.6 6.0 32 584-615 7-38 (45)
236 PF09787 Golgin_A5: Golgin sub 33.1 7.5E+02 0.016 27.8 36.7 26 97-122 110-135 (511)
237 PF02994 Transposase_22: L1 tr 32.9 1.5E+02 0.0032 31.8 7.6 21 374-394 170-190 (370)
238 KOG2129 Uncharacterized conser 32.7 6.4E+02 0.014 26.9 29.9 74 93-166 47-121 (552)
239 PRK04325 hypothetical protein; 32.7 2.5E+02 0.0054 22.2 7.6 44 575-618 9-52 (74)
240 PRK00846 hypothetical protein; 32.3 2.6E+02 0.0057 22.3 7.7 46 574-619 12-57 (77)
241 PF02994 Transposase_22: L1 tr 32.1 1.6E+02 0.0035 31.5 7.8 28 175-202 142-169 (370)
242 PF14992 TMCO5: TMCO5 family 32.0 5.6E+02 0.012 26.0 14.1 28 326-353 14-41 (280)
243 PF04012 PspA_IM30: PspA/IM30 31.8 4.9E+02 0.011 25.3 20.7 167 543-715 3-179 (221)
244 PF10267 Tmemb_cc2: Predicted 31.5 6.9E+02 0.015 26.9 15.4 18 42-59 119-136 (395)
245 PF05377 FlaC_arch: Flagella a 31.4 2.2E+02 0.0047 21.1 6.3 25 366-390 11-35 (55)
246 TIGR03752 conj_TIGR03752 integ 31.1 7.5E+02 0.016 27.2 12.4 34 311-344 68-101 (472)
247 PF06156 DUF972: Protein of un 30.8 3.4E+02 0.0074 23.2 8.3 41 94-134 6-46 (107)
248 PLN02939 transferase, transfer 30.6 1.1E+03 0.023 28.9 32.3 61 324-392 227-287 (977)
249 PF07889 DUF1664: Protein of u 30.5 3.8E+02 0.0083 23.7 12.3 51 603-653 68-118 (126)
250 KOG0249 LAR-interacting protei 30.5 9.1E+02 0.02 28.0 23.6 43 306-348 88-130 (916)
251 PRK11281 hypothetical protein; 30.4 1.2E+03 0.025 29.2 45.8 40 355-394 292-331 (1113)
252 PF06785 UPF0242: Uncharacteri 30.2 6.4E+02 0.014 26.2 20.2 7 441-447 206-212 (401)
253 COG1382 GimC Prefoldin, chaper 29.8 3.8E+02 0.0082 23.4 13.6 20 237-256 14-33 (119)
254 TIGR02449 conserved hypothetic 29.7 2.6E+02 0.0057 21.5 9.2 41 313-353 4-44 (65)
255 PF00769 ERM: Ezrin/radixin/mo 29.3 5.9E+02 0.013 25.4 18.2 13 334-346 79-91 (246)
256 PF05791 Bacillus_HBL: Bacillu 29.3 4.3E+02 0.0094 25.0 9.4 80 315-394 102-181 (184)
257 PF06120 Phage_HK97_TLTM: Tail 29.1 6.6E+02 0.014 26.0 16.8 22 367-388 86-107 (301)
258 KOG0972 Huntingtin interacting 28.6 6.4E+02 0.014 25.6 15.3 24 402-425 336-359 (384)
259 PF04728 LPP: Lipoprotein leuc 28.2 2.5E+02 0.0055 20.8 8.3 6 483-488 43-48 (56)
260 PF04899 MbeD_MobD: MbeD/MobD 28.1 2.9E+02 0.0064 21.6 9.6 47 572-618 18-64 (70)
261 KOG2264 Exostosin EXT1L [Signa 27.5 5.6E+02 0.012 28.6 10.5 54 423-476 94-147 (907)
262 PF02403 Seryl_tRNA_N: Seryl-t 27.3 3.8E+02 0.0083 22.6 8.8 32 366-397 71-102 (108)
263 PF05384 DegS: Sensor protein 27.0 5.1E+02 0.011 24.0 21.2 45 423-467 78-122 (159)
264 PRK11281 hypothetical protein; 26.6 1.3E+03 0.029 28.7 45.4 11 111-121 81-91 (1113)
265 KOG2629 Peroxisomal membrane a 26.3 7.1E+02 0.015 25.4 11.0 67 326-392 125-191 (300)
266 cd00632 Prefoldin_beta Prefold 26.1 4E+02 0.0087 22.5 13.1 30 362-391 70-99 (105)
267 COG1842 PspA Phage shock prote 26.1 6.4E+02 0.014 24.8 19.5 154 558-715 13-180 (225)
268 PF03233 Cauli_AT: Aphid trans 25.1 1.6E+02 0.0035 27.1 5.2 49 4-56 112-160 (163)
269 PRK10361 DNA recombination pro 25.0 9.7E+02 0.021 26.5 24.9 13 439-451 143-155 (475)
270 PF06156 DUF972: Protein of un 24.5 4.5E+02 0.0097 22.5 8.6 18 576-593 16-33 (107)
271 PF05278 PEARLI-4: Arabidopsis 24.4 7.5E+02 0.016 25.0 13.9 103 548-650 159-261 (269)
272 KOG0999 Microtubule-associated 24.4 1E+03 0.022 26.6 70.6 30 175-204 105-134 (772)
273 PF15254 CCDC14: Coiled-coil d 24.0 1.2E+03 0.026 27.3 24.6 8 46-53 110-117 (861)
274 PF04871 Uso1_p115_C: Uso1 / p 24.0 5.3E+02 0.011 23.1 13.6 19 672-690 94-112 (136)
275 PF10186 Atg14: UV radiation r 23.9 7.7E+02 0.017 25.0 20.9 13 117-129 27-39 (302)
276 KOG2264 Exostosin EXT1L [Signa 23.3 6.2E+02 0.013 28.3 9.8 53 597-649 94-146 (907)
277 PF15450 DUF4631: Domain of un 22.6 1.1E+03 0.024 26.3 52.5 24 358-381 127-150 (531)
278 PF07798 DUF1640: Protein of u 21.5 6.8E+02 0.015 23.5 18.5 24 327-350 48-71 (177)
279 PF12795 MscS_porin: Mechanose 21.4 8E+02 0.017 24.3 24.5 24 370-393 114-137 (240)
280 PF10805 DUF2730: Protein of u 20.7 5.3E+02 0.011 21.9 9.2 25 105-129 37-61 (106)
281 PF03915 AIP3: Actin interacti 20.3 1.1E+03 0.025 25.6 18.0 64 437-500 214-282 (424)
282 PF08826 DMPK_coil: DMPK coile 20.1 4E+02 0.0086 20.2 9.8 22 140-161 34-55 (61)
283 PF10205 KLRAQ: Predicted coil 20.0 5.4E+02 0.012 21.8 10.4 8 635-642 44-51 (102)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.88 E-value=1.9e-13 Score=164.51 Aligned_cols=453 Identities=20% Similarity=0.282 Sum_probs=282.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLE 305 (718)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~~le 305 (718)
++....+.+...+..++..+..+...+.++..++.+...++..+..++......+......+..+...+..+...+..-.
T Consensus 1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666667777777777777777777777776666666666555555555555555544444322
Q ss_pred ----HHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 306 ----SLCNQKKKLEEEIDGKIEDA--------------RQSREENDRL----LAKISQTENELSAFRRKIAVQENEASAQ 363 (718)
Q Consensus 306 ----~~~~~~~~le~~l~~~~~~~--------------~~l~~e~~~l----~~~i~ele~~l~~l~~~~~~~~~~~~~~ 363 (718)
.+.....++...+..+..++ .....++..+ .......+..+..++..+...+.++..+
T Consensus 1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222222211111 1122222222 2233344556777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------h---ccCcchHHHHHHHHHHHHHHHHH
Q 043740 364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIARE---------------------K---GECPESRTELEQRNIKLTNKIAN 419 (718)
Q Consensus 364 i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~---------------------~---~~~~~~~~~l~~~~~~L~~e~~~ 419 (718)
+..+......+.++..+++.....+..++..+ . ...++.+.++.....++..++..
T Consensus 1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 77777666666666555555555555544432 1 12224445555678888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHhHHHHHHHHHHHHH-
Q 043740 420 QQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKR-------QILGSKTSLQIAERKMTELA- 491 (718)
Q Consensus 420 ~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~-------~~~~~~~~~~~l~~kl~~l~- 491 (718)
+...+++.+.....+.+....+..+++++...+.........+...+..+.. .++.-...++.+..++..+.
T Consensus 1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887777766666555554444 33333333444555554443
Q ss_pred --HHHHHH-----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHhhHH
Q 043740 492 --EDFRKR-----------LEDNIRVLFRRIQVAEQLHN---ETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNK 555 (718)
Q Consensus 492 --~~~~k~-----------le~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~L~~e~~~L~~E~~~~~~~~~~e~~~~ 555 (718)
..+++. ++...+.+..++..+..... .....+.+...+|+++...+..+ ++..+.
T Consensus 1358 e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d---------~~~~~~ 1428 (1930)
T KOG0161|consen 1358 ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD---------LERSRA 1428 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHH
Confidence 233332 33344445555555444433 44566777777777766655522 222233
Q ss_pred HHHHHHHHHHHH---------------HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 556 ALLAMESVVKKL---------------EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQES 620 (718)
Q Consensus 556 ~~~~~e~~~~~~---------------e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~ 620 (718)
....+++.+..+ ................+..+...+..+....+++......+..++.++.....
T Consensus 1429 ~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 22334455666777777778888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-HHHHHhhhhhhhHHHhh
Q 043740 621 FLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLT-LGELENKIKQQDAELLS 687 (718)
Q Consensus 621 ~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~-~~e~~~~l~~lk~~i~~ 687 (718)
.++..+|+++.....++.++..++..|.++.......+....++...+.. ..++.+.+.....++..
T Consensus 1509 e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~ 1576 (1930)
T KOG0161|consen 1509 EGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEE 1576 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999888777766655554444444 35666666666555444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=2e-12 Score=155.93 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=95.9
Q ss_pred chHHHHHHHHHHHHhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhccccCcccCCCCCCCCCCCCCccCCC
Q 043740 4 SKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKGKGMNYSPCSSSDSEYYS 83 (718)
Q Consensus 4 ~~~~~~~~vk~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 83 (718)
-++..+.+|+.+-+-|...++.++++.+.|++|...+.++...++++.++.+++ .|...+..+..+|++...
T Consensus 958 Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l--------~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 958 EKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL--------NKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999 776777778888888766
Q ss_pred cHHhhh------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 043740 84 SEEIEI------NTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSL 150 (718)
Q Consensus 84 ~~~~~~------~~~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L 150 (718)
.++.+. .+..+..........+..+...+.++...+.....+...+..++......+..+...+..|
T Consensus 1030 e~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL 1102 (1930)
T KOG0161|consen 1030 EREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKEL 1102 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666443 1123333333444444445555555555555555555555555544444444433333333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.80 E-value=7.4e-11 Score=146.70 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740 671 LGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI 717 (718)
Q Consensus 671 ~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~ 717 (718)
...+...+..+...|..+||||+.||++|. .+.+||+||...+
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~----~~~~~~~~l~~q~ 995 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYE----EVLKRLDELKEKR 995 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHH----HHHHHHHHHHHHH
Confidence 467888899999999999999999999999 9999999998764
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.79 E-value=4.3e-11 Score=145.79 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=38.5
Q ss_pred HHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740 673 ELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI 717 (718)
Q Consensus 673 e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~ 717 (718)
.+++.+..++..|..|||||+.||++|. .+.+||+||....
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e----~~~~r~~~l~~~~ 986 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYE----EVEERYEELKSQR 986 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHH----HHHHHHHHHHHHH
Confidence 6889999999999999999999999999 9999999998764
No 5
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.79 E-value=8e-20 Score=137.64 Aligned_cols=55 Identities=25% Similarity=0.553 Sum_probs=52.9
Q ss_pred CccchHHHHHHHHHHHHhhhcCCccc----chhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043740 1 MEVSKAEIEDQVKKILKLVRSKDNGI----TKESKRESELVGLINNFHDRYQSLYAHYN 55 (718)
Q Consensus 1 ~~~~~~~~~~~vk~~~~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 55 (718)
+++|+++||.+||.|+++|+++|||| +|||++||+|+.+|++|||+||+||++||
T Consensus 16 L~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 16 LQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999 69999999999999999999999999997
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.78 E-value=2.7e-10 Score=141.93 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHH
Q 043740 575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-LEKK 653 (718)
Q Consensus 575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~~~~ 653 (718)
..+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+++ +. .
T Consensus 866 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~-~ 944 (1179)
T TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-R 944 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333444444444444444444445555555555555555555555555555666666666666666666555555 22 2
Q ss_pred HhHHHHHHHHHHHHHHhHHH----HHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhh----ccchHHHHhh
Q 043740 654 VGELEKRIKEQDAELLTLGE----LENKIKQQDAELLSLGEEKREAIRQLCVFIDHQR----TDCDYLKAEI 717 (718)
Q Consensus 654 ~~~~e~~~~~~~~~~~~~~e----~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~----er~~fL~~~~ 717 (718)
+... +. ....+... +...+..++..|..||| ||++|. .++ +||+||...+
T Consensus 945 ~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~i~~lg~----aiee~~----~~~~~a~er~~~l~~q~ 1002 (1179)
T TIGR02168 945 LSEE---YS---LTLEEAEALENKIEDDEEEARRRLKRLEN----KIKELG----PVNLAAIEEYEELKERY 1002 (1179)
T ss_pred HHHH---hc---cCHHHHHhhccccccCHHHHHHHHHHHHH----HHHHcC----CCCHHHHHHHHHHHHHH
Confidence 1111 00 00001111 45677889999999999 999999 899 9999998754
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.67 E-value=2.9e-08 Score=123.85 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=82.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-H
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-L 650 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~ 650 (718)
.+...+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+...+......+.. +
T Consensus 870 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~ 949 (1179)
T TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555555666666666666666666666666666666555554333322 2
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740 651 EKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI 717 (718)
Q Consensus 651 ~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~ 717 (718)
........ .... ..-.....++..+..+-..|.+++++|..|++.|. .+..+|+.|...+
T Consensus 950 ~~~~~~~~-~~~~--~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~----~l~~q~~dL~~~~ 1009 (1179)
T TIGR02168 950 SLTLEEAE-ALEN--KIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE----ELKERYDFLTAQK 1009 (1179)
T ss_pred ccCHHHHH-hhcc--ccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH----HHHHHHHHHHHHH
Confidence 11111110 0000 00012456777888888899999999999999999 8888888887653
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.53 E-value=5.5e-07 Score=107.97 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043740 345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIM 424 (718)
Q Consensus 345 ~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~l 424 (718)
.+......|.+....+..+|..+...+.++...+..|..++..+..++............++-..+.-+..+...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444444444555566666666666666666666666666555544332222344455556666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 425 KNQEDKIADQQKIIKNLEDKI 445 (718)
Q Consensus 425 e~~~~~~~~l~~e~~~l~~~i 445 (718)
.........++.++......+
T Consensus 1021 s~~~~~~~~~k~dl~~~~~~~ 1041 (1822)
T KOG4674|consen 1021 SQANEQIEDLQNDLKTETEQL 1041 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444443333
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=99.53 E-value=6e-07 Score=108.14 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHH
Q 043740 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK---GECPESRTELE 407 (718)
Q Consensus 359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~---~~~~~~~~~l~ 407 (718)
.+......+...+..+...+..+...+..+...+..+. ..||.|..++.
T Consensus 395 ~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~ 446 (880)
T PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT 446 (880)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 33344445555666666666666666666666666554 45776555554
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.51 E-value=7.4e-07 Score=107.18 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 362 AQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 362 ~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
..+..+...+..+...+..+...+..+..-+.
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 443 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVE 443 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=99.50 E-value=9.3e-07 Score=106.32 Aligned_cols=25 Identities=0% Similarity=0.080 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043740 31 KRESELVGLINNFHDRYQSLYAHYNL 56 (718)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 56 (718)
+.|..+++.+-++ ..|...+.++..
T Consensus 149 ~~R~~ii~~l~~l-~~~e~~~~~~~~ 173 (880)
T PRK02224 149 SDRQDMIDDLLQL-GKLEEYRERASD 173 (880)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 4555666655555 444444444444
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=99.49 E-value=1e-06 Score=106.15 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=7.3
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 043740 139 KIQAAENMNKSLRDEADERQ 158 (718)
Q Consensus 139 ~l~e~~~~~~~L~~~~~~l~ 158 (718)
.+..+...+..+...+..+.
T Consensus 208 ei~~l~~e~~~l~~~~~~~~ 227 (880)
T PRK03918 208 EINEISSELPELREELEKLE 227 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.44 E-value=1.2e-06 Score=99.55 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740 92 SNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESH 171 (718)
Q Consensus 92 ~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~ 171 (718)
....+.+..+..+...+..++..|...| ....+...|..+++........+.. ..-....+..+..+.+.+.....-
T Consensus 56 ~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~- 132 (775)
T PF10174_consen 56 SRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELER- 132 (775)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 4445555555666667777777777777 7777767676665544333333322 333333333443333333322222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
+...+..++..+..+...+......+..+...+
T Consensus 133 ---lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 133 ---LRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554433
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.40 E-value=4.1e-06 Score=100.71 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhh
Q 043740 568 EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREE--------ISNFEAKLGKQGGD 639 (718)
Q Consensus 568 e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~--------~~~le~~~~~le~e 639 (718)
+++..+...+..++..+..++..+..+..+......++..|..+...+..+.+.+... +.++...+.++..+
T Consensus 1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666666665555544 34555555555555
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 043740 640 KLNIIKTMSELEKKVGELE 658 (718)
Q Consensus 640 ~~~~~~~l~e~~~~~~~~e 658 (718)
+......+.++...+..+.
T Consensus 1323 l~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1323 LEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 15
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=4e-06 Score=95.36 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHH
Q 043740 674 LENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK 714 (718)
Q Consensus 674 ~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~ 714 (718)
+-..+..+...+.++|.||.++|.+|.-.......|..-|.
T Consensus 1076 i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~ 1116 (1293)
T KOG0996|consen 1076 INEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELE 1116 (1293)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44467788899999999999999999977777777766654
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=1.2e-05 Score=100.06 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHhhhhhh-----h
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSL---RDEADERQREISALVKVHES-----H 171 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L---~~~~~~l~~el~~l~~~~e~-----~ 171 (718)
.....+..++..+.++...+......+......+......+......+..+ ...+..+...+..+....+. .
T Consensus 416 e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1311)
T TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL 495 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333344444555555555554444444444444444444444443333211 12333333344333332222 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
...+..+|......+..+..++..+..++..+.
T Consensus 496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~ 528 (1311)
T TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223556666666666666666666666554443
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=1.8e-05 Score=98.36 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA 446 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~ 446 (718)
.+.++...+..+..+...+...+..+......+...+..+...+.
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444444444444444555533333
No 18
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=7e-06 Score=91.40 Aligned_cols=63 Identities=27% Similarity=0.323 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740 93 NFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD 155 (718)
Q Consensus 93 ~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~ 155 (718)
.+...+.+..+++..+..++.+|...|..+..+++.+.++...+.+....++-.+..|+.++.
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT 317 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 344455567777888888888999899888888888888877777766666655555554443
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.27 E-value=1.2e-05 Score=91.59 Aligned_cols=125 Identities=12% Similarity=0.268 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA 446 (718)
Q Consensus 367 l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~ 446 (718)
++..++.+..++..-..++..+...+..... .-.++..++..|..++.........|...+..+...+......++
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~----~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEE----QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444555555444455555554444433 334566778888877777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 043740 447 DQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR 495 (718)
Q Consensus 447 ~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~ 495 (718)
.....+......++.+..++..+.+.+......+..+..+|+.+...++
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888888888888888778888888888777765543
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.15 E-value=1.1e-05 Score=91.21 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043740 575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV 654 (718)
Q Consensus 575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~ 654 (718)
..+..+...+..+...+.......+.+......+...+..+......+...+..+..........+..+...+.
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~------ 428 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH------ 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444444444444444333333444444444444444444444444444444444444333333333333333
Q ss_pred hHHHHHHHHHHHH-----HH-hHHHHHhhhhhhhHHHhhccHHHHHHHH-HHHHHHHhhhccchHHHHh
Q 043740 655 GELEKRIKEQDAE-----LL-TLGELENKIKQQDAELLSLGEEKREAIR-QLCVFIDHQRTDCDYLKAE 716 (718)
Q Consensus 655 ~~~e~~~~~~~~~-----~~-~~~e~~~~l~~lk~~i~~lg~vn~~aIe-ey~~~~~~~~er~~fL~~~ 716 (718)
.....+.....+ +. ....+...+..+...|.. ||||+.||. +|. .+.+||+||...
T Consensus 429 -~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~----e~~~~~~~L~~q 491 (569)
T PRK04778 429 -EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLE----EATEDVETLEEE 491 (569)
T ss_pred -HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH----HHHHHHHHHHHH
Confidence 332222211111 22 356888999999999999 999999999 999 999999999865
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.12 E-value=0.00012 Score=90.04 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHHHhhhccchHHHH
Q 043740 689 GEEKREAIRQLCVFIDHQRTDCDYLKA 715 (718)
Q Consensus 689 g~vn~~aIeey~~~~~~~~er~~fL~~ 715 (718)
..++......|...++.+...|.++=.
T Consensus 1001 ~~~d~~~~~~f~~~f~~In~~F~~if~ 1027 (1163)
T COG1196 1001 EELDKEKRERFKETFDKINENFSEIFK 1027 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666677776665543
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.09 E-value=1.6e-11 Score=143.27 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 404 TELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDT 458 (718)
Q Consensus 404 ~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~ 458 (718)
..++..+..|..++..+...+......+..+.+.+..|...+.+++..+.+....
T Consensus 429 e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 429 EELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555444444443
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.08 E-value=1.7e-11 Score=143.13 Aligned_cols=335 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK---GECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQK 436 (718)
Q Consensus 360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~---~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~ 436 (718)
+...+.++...+..+.+........+..++..+..+. .+....++++.....+|..++..+...++........+.+
T Consensus 157 l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r 236 (859)
T PF01576_consen 157 LEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQR 236 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555666666666553 3344677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhHHHHHHHHHHHHH---HHHHH----------
Q 043740 437 IIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAK-------RQILGSKTSLQIAERKMTELA---EDFRK---------- 496 (718)
Q Consensus 437 e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~-------~~~~~~~~~~~~l~~kl~~l~---~~~~k---------- 496 (718)
....+..++.+++..+.........+...+..+. ..+..-......+...+..+. ..|++
T Consensus 237 ~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~ 316 (859)
T PF01576_consen 237 EKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRT 316 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH
Confidence 9999999999998888776666555554444433 333332223333333333332 11111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHhhHHHHHHHHHHHHHHHH---
Q 043740 497 -RLEDNIRVLFRRIQVAEQLHN---ETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEI--- 569 (718)
Q Consensus 497 -~le~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~L~~e~~~L~~E~~~~~~~~~~e~~~~~~~~~e~~~~~~e~--- 569 (718)
.++...+.+...+.++...+. ..+.++.+...+|+.++.++. ..+++.++....+++..++|+.
T Consensus 317 EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~---------~eLe~~~~~~~~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 317 EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT---------SELEKAQAAAAELEKKQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 233344455555555555543 446678888888888777665 2234444445555555555511
Q ss_pred ------------hhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043740 570 ------------NGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQG 637 (718)
Q Consensus 570 ------------~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le 637 (718)
...+......+.+++..++..+..+......+......|..++.++...+...+..+|.++..+..++
T Consensus 388 e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 388 EWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence 12445566777888888888888888899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-HHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHH
Q 043740 638 GDKLNIIKTMSELEKKVGELEKRIKEQDAELLT-LGELENKIKQQDAELLSLGEEKREAIRQLCVFI 703 (718)
Q Consensus 638 ~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~-~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~ 703 (718)
.++..+...|.+....+...+....++...+.. ..++.+.|......+..+----.-.|+.+...|
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L 534 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL 534 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence 999999999999999998888888887777766 467888888887776664433344555555444
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=0.00017 Score=86.97 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCcchHHHHH
Q 043740 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR--EKGECPESRTELE 407 (718)
Q Consensus 359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~--~~~~~~~~~~~l~ 407 (718)
++...+..+...+..+...+..+...+..+..-+.. .-..||.|+.++.
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~ 463 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG 463 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence 344445555555555555555555555555443332 2345776666654
No 25
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=0.0014 Score=74.92 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 043740 436 KIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELA----EDFRKRLEDNIRVLFRRIQV 511 (718)
Q Consensus 436 ~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~----~~~~k~le~~i~~l~~~~~~ 511 (718)
.+...+...+..+..++....+.+..+.+.+..+...+...+..+..|+.+++.+. .+||..+++.|+.|+....
T Consensus 697 ~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~- 775 (1141)
T KOG0018|consen 697 LDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL- 775 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-
Confidence 34444455555556666677777777788888888888888888888888888776 8999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740 512 AEQLHNETKDSYKKTLEQLEESNRLLSSEGQ 542 (718)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~L~~e~~~L~~E~~ 542 (718)
.+.++..+..|..++.++.. .|.++++
T Consensus 776 -~~~~a~k~~ef~~q~~~l~~---~l~fe~~ 802 (1141)
T KOG0018|consen 776 -QQEFAKKRLEFENQKAKLEN---QLDFEKQ 802 (1141)
T ss_pred -HHHHHHHHHHHHHHHHHHhh---hhhheec
Confidence 77778888899999999987 6777755
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.65 E-value=0.0042 Score=76.75 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 144 ENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 144 ~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
...+..++..+..+...+..+.....+....+..++..+...+...+..++.+...+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 280 EQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555566777777777777777777777777766654
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.0025 Score=72.19 Aligned_cols=139 Identities=15% Similarity=0.186 Sum_probs=80.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELE 651 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~ 651 (718)
.+...+.........+...+.........+..++..+......+........-..+.++..+.++..+...+...+..+.
T Consensus 854 ~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 854 NLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLL 933 (1174)
T ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555555666666666666677777777777777777777776666
Q ss_pred HHHhHHHHHHHHHHH-----HH--HhHHHHHhhhhhhhHHHhhcc-HHHHHHHHHHHHHHHhhhccchHHH
Q 043740 652 KKVGELEKRIKEQDA-----EL--LTLGELENKIKQQDAELLSLG-EEKREAIRQLCVFIDHQRTDCDYLK 714 (718)
Q Consensus 652 ~~~~~~e~~~~~~~~-----~~--~~~~e~~~~l~~lk~~i~~lg-~vn~~aIeey~~~~~~~~er~~fL~ 714 (718)
..+..+.....-... ++ .++...+.+++.+...+..|+ .|||.++.=+. .+..+|.-|.
T Consensus 934 ~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle----~~E~~~~~lk 1000 (1174)
T KOG0933|consen 934 KKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLE----RAEEKEAALK 1000 (1174)
T ss_pred HhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHH----HHHHHHHHHH
Confidence 655554322110000 01 135677888888877777775 47777776666 6666555544
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=0.0035 Score=72.32 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 139 KIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQ 206 (718)
Q Consensus 139 ~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~ 206 (718)
.+...+.++..|......++.+++............+...+..++..+..+..++.....+....+.+
T Consensus 441 ~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaese 508 (1293)
T KOG0996|consen 441 EIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESE 508 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333332222222244444444444444444444444444444433
No 29
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.58 E-value=0.003 Score=71.46 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740 92 SNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESH 171 (718)
Q Consensus 92 ~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~ 171 (718)
.-+.-.+..+...|-.+..++++--..+-.+..+++.+..++......+.++-... .......+++..+....+.-
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea----~ra~~yrdeldalre~aer~ 248 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA----HRADRYRDELDALREQAERP 248 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHhhhcC
Confidence 33444444444444444444444444444444444444444444333333332222 22223333333333322221
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 172 GNRASARIKE---LEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 172 ~~~~~~~i~~---l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
-..+..++-+ ....+.+++..-.-|..++.-++++|
T Consensus 249 d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQL 287 (1195)
T KOG4643|consen 249 DTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQL 287 (1195)
T ss_pred CCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2233333333 46667777777777777777766666
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.50 E-value=0.0026 Score=66.72 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 125 EKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 125 e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
+...|+..|......+..++.....|...+..+......- .......+...+..+...+..+..+...+..++..+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~---~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEE---VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc---CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 3455666777777777777777766666666665542111 1111222445555555555555555555555544444
Q ss_pred H
Q 043740 205 A 205 (718)
Q Consensus 205 ~ 205 (718)
.
T Consensus 82 ~ 82 (312)
T PF00038_consen 82 E 82 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.44 E-value=0.0049 Score=66.96 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRD 152 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~ 152 (718)
...+..+|......+..+...+..++......+.........|..
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433334333333333333
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.42 E-value=0.016 Score=71.83 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=8.3
Q ss_pred HHHHHHHhhhcC
Q 043740 11 QVKKILKLVRSK 22 (718)
Q Consensus 11 ~vk~~~~~i~~~ 22 (718)
=||.||=-|..+
T Consensus 199 ~iK~mIi~i~~e 210 (1201)
T PF12128_consen 199 FIKNMIIAILEE 210 (1201)
T ss_pred HHHHHHHHHHHh
Confidence 377777777766
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.33 E-value=0.0091 Score=64.92 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA 163 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~ 163 (718)
+......|+.....+..+...+...+.........+......+......+..+...
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~ 210 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444443
No 34
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.28 E-value=0.011 Score=64.20 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 437 IIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILG 475 (718)
Q Consensus 437 e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~ 475 (718)
.+..+..++..+-.+++.+.+....|..++..++..+..
T Consensus 350 ~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 350 EIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcc
Confidence 334444444444444444444455555566555555443
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.25 E-value=0.0064 Score=60.64 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=5.5
Q ss_pred HhHHHHHHHHHHHHH
Q 043740 146 MNKSLRDEADERQRE 160 (718)
Q Consensus 146 ~~~~L~~~~~~l~~e 160 (718)
.+..|...+.-++..
T Consensus 37 e~~~l~rri~~lE~~ 51 (237)
T PF00261_consen 37 EVASLQRRIQLLEEE 51 (237)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.20 E-value=0.021 Score=63.98 Aligned_cols=210 Identities=20% Similarity=0.276 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQF-----------ATEAKQLGEKNIELHAQEQATEQVRGL----VVQAN 239 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l-----------~~~~~~l~e~~~~l~~~~~~~~~~~~l----~~~l~ 239 (718)
.+++...++..+..++..++.+..+..-|...+ ..+.++|+.-+..|. +....++++ .....
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLK---dalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLK---DALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHH---HHHHHHHhcchHHHHHHH
Confidence 445555555555555555555555554444444 445666666666665 222333322 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 043740 240 VMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKK---SEVEHKLLKEREDFLMRVKDLESLCNQK---KK 313 (718)
Q Consensus 240 ~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~---~~~~~~l~~e~~~l~~~~~~le~~~~~~---~~ 313 (718)
.+.++++....++.++...-+.+..++......|..++..+... .+=...|....-.+++++..|+..-..+ ++
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee 479 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE 479 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333444444444444444333311 1111112222223333333333211111 12
Q ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 314 LEEEIDGKIED-ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQ 391 (718)
Q Consensus 314 le~~l~~~~~~-~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~e 391 (718)
+.+.+..-..+ -.+|++++..+...+.++..++..-+ ...-+....|......+.+|+..+.++..+....+++
T Consensus 480 ~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq----et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 480 MNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ----ETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 22222222222 25666666666666666665555444 2333445556666666666666666665544444443
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.17 E-value=0.0053 Score=61.23 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.1
Q ss_pred HHHHHH
Q 043740 244 DLVSLT 249 (718)
Q Consensus 244 el~~l~ 249 (718)
++..+.
T Consensus 37 e~~~l~ 42 (237)
T PF00261_consen 37 EVASLQ 42 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 38
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.12 E-value=0.025 Score=61.85 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=34.5
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 87 IEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAA 143 (718)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~ 143 (718)
++.|+-.++..+..-...+.....-|...+..+..++-....+...+++....-..+
T Consensus 90 Ik~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL 146 (786)
T PF05483_consen 90 IKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDL 146 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHH
Confidence 334665555544444445555677777777777777777777766666554444444
No 39
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.059 Score=61.34 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=34.6
Q ss_pred hHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHH
Q 043740 670 TLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK 714 (718)
Q Consensus 670 ~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~ 714 (718)
+..++.+.+...-.++.+++.||..|+++|. ...++-+-|.
T Consensus 950 ~~~el~kkL~~~neelk~ys~VNKkAldQf~----nfseQre~L~ 990 (1200)
T KOG0964|consen 950 KSKELMKKLHRCNEELKGYSNVNKKALDQFV----NFSEQRESLK 990 (1200)
T ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHH----HHHHHHHHHH
Confidence 4578899999999999999999999999999 6666666554
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.98 E-value=0.056 Score=60.82 Aligned_cols=103 Identities=18% Similarity=0.412 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 312 KKLEEEIDGKIEDARQSREENDRLLAKISQTEN--ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLD 389 (718)
Q Consensus 312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~--~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le 389 (718)
..|..++.+-+.+.++..+........+.++-. ++.+|.++.. ..+.+.|+..+..++..++++...+.-|.
T Consensus 279 a~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmA------EERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 279 ADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMA------EERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544 3333333332 23445566666666666666666666666
Q ss_pred HHHHHHhccCc----chHHHHHHHHHHHHHHHHHH
Q 043740 390 SQIAREKGECP----ESRTELEQRNIKLTNKIANQ 420 (718)
Q Consensus 390 ~el~~~~~~~~----~~~~~l~~~~~~L~~e~~~~ 420 (718)
.++++-.+..+ -....++..+.+|+.-...+
T Consensus 353 aEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 353 AEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred HHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 66655433322 23444555566655544444
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.93 E-value=0.041 Score=57.61 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 311 KKKLEEEIDGKIEDARQSREENDRLLAKISQTENE----LSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKG 386 (718)
Q Consensus 311 ~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~----l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~ 386 (718)
+..|-+.+......++.|+.++..|...|..+... ...+...+...+..+...|..+......+..++..+...+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 34455556666666667777777777777666543 33344444444444444444444444444444444333333
Q ss_pred HHH
Q 043740 387 QLD 389 (718)
Q Consensus 387 ~le 389 (718)
.+.
T Consensus 86 ~~r 88 (312)
T PF00038_consen 86 DLR 88 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.90 E-value=0.082 Score=60.04 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
....+..+...|..++..+..+...+..+...-.....++.++......++..+.
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555544443
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.86 E-value=0.1 Score=59.73 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043740 226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEE 279 (718)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e 279 (718)
.+...+..+...|..++.+++.....+..++..+.....++..+...+..+..+
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766666555555555555555555444444444333
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.85 E-value=0.073 Score=58.10 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 407 EQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTE 464 (718)
Q Consensus 407 ~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~ 464 (718)
...+..+..+...+...+...++....+..+...+...+..+...++...-....++.
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n 204 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQN 204 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555555555555555555554443333333333
No 45
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.84 E-value=0.086 Score=58.49 Aligned_cols=15 Identities=13% Similarity=0.623 Sum_probs=7.3
Q ss_pred HHHHhhhhhhhHHHh
Q 043740 672 GELENKIKQQDAELL 686 (718)
Q Consensus 672 ~e~~~~l~~lk~~i~ 686 (718)
..++..++.++-+|.
T Consensus 617 ~k~eeelqek~~qVm 631 (1265)
T KOG0976|consen 617 DKLEEELQEKECQVM 631 (1265)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555443
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.1 Score=56.34 Aligned_cols=66 Identities=15% Similarity=0.291 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 138 SKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 138 ~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
..+..++..+..|+.++.+.+.-+..+...... ....+..+...+..-+.+++.++.+...|..+|
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~----~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQH----MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777777776666555 555666666666666666666666666666555
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.73 E-value=0.13 Score=57.53 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740 104 EQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMN 147 (718)
Q Consensus 104 ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~ 147 (718)
++..++.++..++..+......+.....++.....-+.++...+
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL 78 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL 78 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666665555555555544444444443
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.67 E-value=0.053 Score=61.99 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 181 ELEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 181 ~l~~~i~~l~~~l~~l~~e 199 (718)
.++..+..+......+..+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~ 235 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAE 235 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.62 E-value=2.9e-05 Score=90.56 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHhhhhhhhHHHhhccHHHHHHHHHHHHH
Q 043740 672 GELENKIKQQDAELLSLGEEKREAIRQLCVF 702 (718)
Q Consensus 672 ~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~ 702 (718)
.+++..+..+...+.-|-.|--..|.+|..-
T Consensus 609 ~~l~~~~~~~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 609 AELKAELASAEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556566666666666666666633
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.62 E-value=0.4 Score=59.93 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 312 KKLEEEIDGKIEDARQSREENDRLLAKISQTE 343 (718)
Q Consensus 312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele 343 (718)
..+....+........++.+.+.|...|..+.
T Consensus 568 ~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 568 ESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555554443
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.24 Score=56.83 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhcCCc
Q 043740 8 IEDQVKKILKLVRSKDN 24 (718)
Q Consensus 8 ~~~~vk~~~~~i~~~~~ 24 (718)
-++||+.+-.+..+.=+
T Consensus 188 KetKlkEi~~lL~eeI~ 204 (1174)
T KOG0933|consen 188 KETKLKEINTLLREEIL 204 (1174)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35566666666554443
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.55 E-value=0.13 Score=58.86 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 043740 408 QRNIKLTNKIANQ 420 (718)
Q Consensus 408 ~~~~~L~~e~~~~ 420 (718)
..+..+......+
T Consensus 386 ~~l~~~~~~~~~~ 398 (562)
T PHA02562 386 DELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.54 E-value=0.32 Score=56.78 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhc
Q 043740 695 AIRQLCVFIDHQRT 708 (718)
Q Consensus 695 aIeey~~~~~~~~e 708 (718)
+.+||.+.-|.|+.
T Consensus 1016 ~LDEFDVFMD~vNR 1029 (1074)
T KOG0250|consen 1016 ALDEFDVFMDMVNR 1029 (1074)
T ss_pred hhhHHHHHHHHHHH
Confidence 44555544444443
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.52 E-value=0.28 Score=55.57 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043740 112 VSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKL 191 (718)
Q Consensus 112 i~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~ 191 (718)
+.++...|..+....+. -+|......+......+..+...+..+...+..+....+. ....+..+...+..++.
T Consensus 77 ~~~ie~~L~~ae~~~~~--~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~----nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 77 LPEIEEQLFEAEEYADK--YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEK----NREEIEELKEKYRELRK 150 (560)
T ss_pred hHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444444443333222 2344444556666666666666666666666666555544 44455555555555555
Q ss_pred HHHHHHHHHHH
Q 043740 192 ELGSLNDQKRD 202 (718)
Q Consensus 192 ~l~~l~~e~~~ 202 (718)
.+-........
T Consensus 151 ~ll~~~~~~G~ 161 (560)
T PF06160_consen 151 ELLAHSFSYGP 161 (560)
T ss_pred HHHHhhhhhch
Confidence 54444444333
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.42 E-value=0.00046 Score=80.63 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 368 KAKVDNLQQKLDDMQTKKGQL 388 (718)
Q Consensus 368 ~~~~~~l~~~l~~l~~~~~~l 388 (718)
..+..-+.++++.+...+..+
T Consensus 405 erq~~L~~kE~d~LR~~L~sy 425 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSY 425 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444443333333
No 56
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.36 E-value=0.41 Score=53.71 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043740 586 SAKNWVTESNNSKKSLQQQVKSLVQKLDR 614 (718)
Q Consensus 586 ~l~~~l~~l~~~~~~l~~e~~~l~~el~~ 614 (718)
....++...+.....+...+.....++..
T Consensus 485 ~A~aqve~ak~se~e~l~kle~~~~e~~~ 513 (522)
T PF05701_consen 485 AAMAQVEAAKASEKEILEKLEEAMKEIEE 513 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333
No 57
>PRK11637 AmiB activator; Provisional
Probab=97.34 E-value=0.34 Score=53.17 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740 104 EQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD 155 (718)
Q Consensus 104 ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~ 155 (718)
+|.....++..+...+..+..++..+..++......+......+..+...+.
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~ 106 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID 106 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333333333333333333333333333333
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.29 E-value=0.47 Score=52.99 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 409 RNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMK 453 (718)
Q Consensus 409 ~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~ 453 (718)
.++.|......+...+........+...+++.|....++.+.+++
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333344444443333333333
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.24 E-value=0.17 Score=47.05 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 314 LEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 314 le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
|.++...+...+....+....|...+..+...+..++..+.. -..+...+.+++....++...-..+-++...++.+-.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~-aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK-AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555666666666666666655532211 1122334444444444444444444444444444443
Q ss_pred H
Q 043740 394 R 394 (718)
Q Consensus 394 ~ 394 (718)
.
T Consensus 99 ~ 99 (193)
T PF14662_consen 99 S 99 (193)
T ss_pred H
Confidence 3
No 60
>PRK11637 AmiB activator; Provisional
Probab=97.13 E-value=0.39 Score=52.62 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043740 188 RLKLELGSLNDQKRDLEA 205 (718)
Q Consensus 188 ~l~~~l~~l~~e~~~l~~ 205 (718)
.+..++..+..++..+..
T Consensus 44 ~~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEK 61 (428)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555555555544443
No 61
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.09 E-value=0.38 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 323 EDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 323 ~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
..+..++.++..++..+.++...|..++
T Consensus 221 ~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 221 KKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555554444444
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.67 Score=50.37 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 043740 34 SELVGLINNFHDRYQSLYAHYNLL 57 (718)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~~~~ 57 (718)
-..+-.|.+|..-+--||-+-|.-
T Consensus 96 ~l~~PS~KdF~~iFkfLY~~Ldp~ 119 (581)
T KOG0995|consen 96 LLMKPSVKDFIAIFKFLYGFLDPD 119 (581)
T ss_pred hcCCCccccHHHHHHHHHhccCCC
Confidence 344556778888777777654433
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.05 E-value=1.6 Score=54.69 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 349 FRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQL 388 (718)
Q Consensus 349 l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~l 388 (718)
+...+...+..+.............++..++.|...+..+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l 598 (1486)
T PRK04863 559 LQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444433
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.03 E-value=1 Score=51.99 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhh---hhHHHHHHH
Q 043740 105 QQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHG---NRASARIKE 181 (718)
Q Consensus 105 i~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~---~~~~~~i~~ 181 (718)
+.+++.+|..|+..|.....--..|..++......=..+...+..++...+.|+..+..|......+. ..++.++.+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655555555555444433333334455555555566666665555544333222 234455555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043740 182 LEGQVSRLKLELGSLNDQKR 201 (718)
Q Consensus 182 l~~~i~~l~~~l~~l~~e~~ 201 (718)
.......++.+|...+..+.
T Consensus 500 E~~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55555555555544444433
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.03 E-value=0.24 Score=44.85 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSA 348 (718)
Q Consensus 306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~ 348 (718)
.+..++.-|++++......+......+.....+...++..+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.03 E-value=0.37 Score=47.20 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=20.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 312 KKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAV 355 (718)
Q Consensus 312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~ 355 (718)
..++.++......+..+..++..+...+..++..+...+..+..
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555544444444443333
No 67
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.98 E-value=0.86 Score=50.40 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043740 105 QQGVALEVSELRNKLMSTSEEKAALNSEYQ 134 (718)
Q Consensus 105 i~~~~~ei~~l~~~l~~~~~e~~~l~~~~~ 134 (718)
+..++.+..+...-...+..-+..+-..|+
T Consensus 171 ~~~yE~EREET~qly~~l~~niekMi~aFE 200 (786)
T PF05483_consen 171 MKKYEYEREETRQLYMDLNENIEKMIAAFE 200 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333444444444444444444443333333
No 68
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.9 Score=50.52 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 171 HGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELH 222 (718)
Q Consensus 171 ~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~ 222 (718)
...++...+..++.++.-.+..+..+...+...+.++.....+|......+.
T Consensus 159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666667777666666666666545555544444443
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.97 E-value=1 Score=51.09 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 043740 522 SYKKTLEQLEESNRLLSSE 540 (718)
Q Consensus 522 ~~~~~~~~L~~e~~~L~~E 540 (718)
.+...+.+|+..+-+|..|
T Consensus 432 dl~e~~e~le~~~~ql~~e 450 (617)
T PF15070_consen 432 DLKERVEKLEHRFIQLSGE 450 (617)
T ss_pred hHHHHHHHHHHHHHHhccC
Confidence 3444455555555555444
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.92 E-value=1.2 Score=51.29 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 043740 149 SLRDEADERQREISALVKVHES 170 (718)
Q Consensus 149 ~L~~~~~~l~~el~~l~~~~e~ 170 (718)
.|+.++.+|+.+|........+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E 443 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE 443 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH
Confidence 4444555555555444444433
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=1.1 Score=50.23 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK 385 (718)
Q Consensus 306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~ 385 (718)
.+..+++.-.+.+-........++-++..|..++..+...+.+.+- .+......|......++-...++..+..++
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~----~~tt~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV----DITTQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee----ccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334444433444444444455555555555555555554444442 222333444445555555555555555555
Q ss_pred HHHHHHHHH
Q 043740 386 GQLDSQIAR 394 (718)
Q Consensus 386 ~~le~el~~ 394 (718)
.+++..+..
T Consensus 496 kE~q~kl~~ 504 (1118)
T KOG1029|consen 496 KELQEKLQK 504 (1118)
T ss_pred HHHHHHHHh
Confidence 555444433
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.84 E-value=1.6 Score=51.15 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHH
Q 043740 626 ISNFEAKLGKQGGDKLNIIKTMSELEKKVGELE 658 (718)
Q Consensus 626 ~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e 658 (718)
...|......|-.........|.+++.++..-+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~ 1723 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNE 1723 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333334444444444444444444444443
No 73
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.82 E-value=1.7 Score=51.45 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 437 IIKNLEDKIADQQKIMKNQEDTVEKLT 463 (718)
Q Consensus 437 e~~~l~~~i~~l~~~l~~~~~~~~~l~ 463 (718)
........+-+++..++........++
T Consensus 750 ~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 750 SKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333344444444444443333333333
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.79 E-value=0.00032 Score=81.77 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAAL 129 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l 129 (718)
.+.+++.+++..+.+++..+..+..+...|
T Consensus 250 ~L~~el~~~e~~~~d~~~~~e~le~ei~~L 279 (713)
T PF05622_consen 250 RLREELERLEEQRDDLKIELEELEKEIDEL 279 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444333
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.69 E-value=2 Score=50.44 Aligned_cols=108 Identities=17% Similarity=0.312 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQE----QATEQVRGLVVQANVMQQDLVSLTS 250 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~----~~~~~~~~l~~~l~~~~~el~~l~~ 250 (718)
+...+......+..+...+...++.+..+....+.....+......+.... .+..++....+.+...+..+..+..
T Consensus 300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333333333333333221 3444444444445555555555554
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 043740 251 QKNELQLLL-KGKTKEISEYLTQLKTLEEELKK 282 (718)
Q Consensus 251 e~~~l~~~l-~~~~~el~~~~~~i~~l~~e~~~ 282 (718)
.+..+..+. .....++.+....++.|..++..
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444 33333333333333333333333
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.66 E-value=1.5 Score=48.48 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 174 RASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 174 ~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
.+..++..++..+..+-.+.+.++.+...+...+
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3555666666665555555555555555444333
No 77
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.65 E-value=2.1 Score=50.15 Aligned_cols=65 Identities=9% Similarity=0.160 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISAL 164 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l 164 (718)
.+...++.+..+|..+...|...+..+.+....+.-....|..++.....|.....+|...++.+
T Consensus 1229 ~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1229 QLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444555555555555555555555444444333444444444444444444444444433
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.62 E-value=0.0005 Score=80.17 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 043740 39 LINNFHDRYQSLYAHYNLL 57 (718)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (718)
++.+|..-|+.+..-|...
T Consensus 68 r~~NLk~l~~~i~~yy~e~ 86 (713)
T PF05622_consen 68 RVSNLKKLLRNIKSYYQEE 86 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999988865
No 79
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.61 E-value=1.8 Score=48.90 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI 179 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i 179 (718)
....++..++.++.++...+..+..+...+...+.+....+.+.......++..+.-.+.-+.-+.+ ....+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d--------~e~ni 396 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD--------AEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cHHHH
Confidence 4445566677777777777777777777777777766666666666666666555533333222222 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 180 KELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQL 214 (718)
Q Consensus 180 ~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l 214 (718)
..|+..+..-...+..|..+-.....-+..++..|
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555555555555555555444443333344433
No 80
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.60 E-value=1.2 Score=46.84 Aligned_cols=67 Identities=13% Similarity=0.292 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 137 LSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 137 ~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
...+..+..+...|+.+...++.-...+....+. .-..+..+...|..-+.+++.|+.....|..++
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~----~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE----WPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566677777777777777777777776655544 233333444444444444444444444444433
No 81
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.37 E-value=1.3 Score=44.36 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIAD 447 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~ 447 (718)
....+++.+.+|..++.-+..++.++..+...-.+-+..+...+.+
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d 260 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQD 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4456778888888888888888888777666555555555555543
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=3.3 Score=46.95 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740 98 HQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD 155 (718)
Q Consensus 98 ~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~ 155 (718)
+.+.+..|..++.++..+++....+.-+...+..+++........+......|+.++.
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555666666666666666666666666666555555555555555555444
No 83
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.96 E-value=0.12 Score=49.90 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI 179 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i 179 (718)
.+..++..+......+...|..+......+...+......|..+...+..|...+..+..++.......+. +..++
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----l~DE~ 153 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----LQDEL 153 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 44444444444444444444444444444444444444444455555555555555544444443333333 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 180 KELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 180 ~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
..+..++..++..+..+..+-..|-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 84
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.89 E-value=6.2 Score=47.92 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=6.2
Q ss_pred ccCcchHHHHH
Q 043740 397 GECPESRTELE 407 (718)
Q Consensus 397 ~~~~~~~~~l~ 407 (718)
..||-|..++.
T Consensus 458 ~~CPvCg~~l~ 468 (908)
T COG0419 458 EKCPVCGQELP 468 (908)
T ss_pred CCCCCCCCCCC
Confidence 46886654443
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=4.4 Score=46.01 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 043740 95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALV 165 (718)
Q Consensus 95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~ 165 (718)
.+.+..+...+.++...|.++...++.+......+..+..+....+.........|++..+-|+.++....
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444555555667777777777777777777777777777777777777777788888888887776433
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.86 E-value=1.6 Score=40.85 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 366 ALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 366 ~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
.+....+.++....+|......|...+
T Consensus 113 kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 113 KLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 333333444444444444444444433
No 87
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.80 E-value=4.7 Score=45.80 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 228 TEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 228 ~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
...+..+...+..+...+..+..++..+...=.....++..+......++..+.
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544444444444444444444444433
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.72 E-value=3.5 Score=43.83 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 366 ALKAKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 366 ~l~~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
.+...+..-++-+..+.+.+..-+..+.
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~ 227 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLE 227 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 89
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.70 E-value=3.9 Score=44.28 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSE 285 (718)
Q Consensus 227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~ 285 (718)
....+......+..++..++..-..+..|....++...++..+...-..+..++.....
T Consensus 102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~ 160 (570)
T COG4477 102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRH 160 (570)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666777777777777777778888888888888888888888877777665444
No 90
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.67 E-value=2.7 Score=42.11 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKI 431 (718)
Q Consensus 359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~ 431 (718)
.+.+.+......+...-.+.+.-.+....++--+...+.+.......|...+..|...+..+..++..++.+.
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554443332223333344444444444444444444433
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.54 E-value=3.2 Score=42.16 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH
Q 043740 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT 404 (718)
Q Consensus 325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~ 404 (718)
++.+++++..|......+..+..++.+.-..-+.+...++.....++..|..++..........+.+|..+.. .+.
T Consensus 169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls----qiv 244 (306)
T PF04849_consen 169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS----QIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3344444444444444444433333322222223333344444444444444444444444444444444333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 405 ELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA 446 (718)
Q Consensus 405 ~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~ 446 (718)
++...+..+..++..+...+.........+..++..+.....
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666655555544433334333333333333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.49 E-value=5.9 Score=44.87 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043740 363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGE 398 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~ 398 (718)
.+..+...+..+..++.........|..++..+...
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333444444555555555555566666666665443
No 93
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.34 E-value=6.8 Score=44.62 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 043740 605 VKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSEL 650 (718)
Q Consensus 605 ~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~ 650 (718)
+..|...+..+-....++..++.+|+.-+-.+.++.+.+...+.=|
T Consensus 416 mekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly 461 (617)
T PF15070_consen 416 MEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLY 461 (617)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccc
Confidence 3344444444444445555555555555555555555555554433
No 94
>PRK09039 hypothetical protein; Validated
Probab=95.24 E-value=4.9 Score=42.43 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 043740 109 ALEVSELRNKLMSTSEEKA 127 (718)
Q Consensus 109 ~~ei~~l~~~l~~~~~e~~ 127 (718)
..++.....+|..+..++.
T Consensus 45 s~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 45 SREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3334444444433333333
No 95
>PRK09039 hypothetical protein; Validated
Probab=95.23 E-value=4.9 Score=42.40 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 043740 363 QILALKAKVD 372 (718)
Q Consensus 363 ~i~~l~~~~~ 372 (718)
++..+...++
T Consensus 173 ~i~~L~~~L~ 182 (343)
T PRK09039 173 KIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.10 E-value=4.4 Score=41.13 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 043740 98 HQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMN-KSLRDEADERQREISALVKVHESHGNRAS 176 (718)
Q Consensus 98 ~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~-~~L~~~~~~l~~el~~l~~~~e~~~~~~~ 176 (718)
+..+..+-..+..++...+.....+..++..+....-.+......-+..| ..|-..|..++.+...|...++...
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EE---- 104 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEE---- 104 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33344433344444444444444444444444222222112222222222 4455667777777666543332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQ 256 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~ 256 (718)
+--...|...+..+..++-.++..+..+..-+ +. .+...|..+..+....+..+..|..++-++.
T Consensus 105 ------E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~------V~---kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 105 ------EFLTNDLSRKLNQLRQEKVELENQLEQEQEYL------VN---KLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 11224555666677777776666552111100 00 2344555555555666666667777766666
Q ss_pred HHHHhHHHHH
Q 043740 257 LLLKGKTKEI 266 (718)
Q Consensus 257 ~~l~~~~~el 266 (718)
..++.-..-+
T Consensus 170 n~LE~EQE~l 179 (310)
T PF09755_consen 170 NTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHH
Confidence 6665443333
No 97
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.97 E-value=11 Score=45.06 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIK 439 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~ 439 (718)
..+.+......+..+...+...++..-++...++.+++
T Consensus 743 ~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 743 KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 45566666666666666666666654444444444444
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.94 E-value=2.6 Score=37.72 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 312 KKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
+.+..++...+.+...+...+...+.+|.+++....++.
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444555555555555555555555444444
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.79 E-value=4 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 230 QVRGLVVQANVMQQDLVSLTSQKNELQL 257 (718)
Q Consensus 230 ~~~~l~~~l~~~~~el~~l~~e~~~l~~ 257 (718)
.|..+.+.+..++..+..+..+...|..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655543
No 100
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.68 E-value=8.8 Score=42.52 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 338 KISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDM 381 (718)
Q Consensus 338 ~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l 381 (718)
.|..+-..+..++..+....+.+..+|..+...+......+..+
T Consensus 293 ~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel 336 (629)
T KOG0963|consen 293 EIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEEL 336 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333444444444444444444433333
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.60 E-value=9.1 Score=42.39 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 326 RQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 326 ~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
..+...+..++..+.....++..+...+.....-....++-.-..+...++.+-.++.++..|..++...
T Consensus 199 ~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 199 EELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443333333344444444455555555555555555555555443
No 102
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.44 E-value=7.2 Score=40.47 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043740 97 AHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREI 161 (718)
Q Consensus 97 ~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el 161 (718)
.+..+-.+...+...+..+......+..+++.+..++.........++.-+..|+..-..+..+.
T Consensus 30 k~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~ 94 (309)
T PF09728_consen 30 KYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES 94 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666677777777777777777766666555544455555555554444444443
No 103
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.75 E-value=15 Score=41.49 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQ--------EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQI 473 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~--------~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~ 473 (718)
...++..++..|..+...+..++.-. .........++..+......+...+....+.+..+...+......+
T Consensus 472 ~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 472 SVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455555566665555555443321 1112222334555555555666666666666666666666666666
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 474 LGSKTSLQIAERKMTELAEDFRKRLEDNIRVL 505 (718)
Q Consensus 474 ~~~~~~~~~l~~kl~~l~~~~~k~le~~i~~l 505 (718)
..+......+...+......|-+.|...+.++
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444444333
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.57 E-value=17 Score=41.82 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE 160 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e 160 (718)
.+...|..++.++..++..+.....+.+.|.............++.....|+..+.+++-.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566688888888888888888888887777777777777776666666666655443
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.10 E-value=6.2 Score=35.28 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
+..+..+...++..+..++.........+......|..+-..+...+..+...+.+|..+..-|-..|
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444444445555555555555555555555555555544444
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.01 E-value=13 Score=38.61 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043740 325 ARQSREENDRLLAKISQTENELS 347 (718)
Q Consensus 325 ~~~l~~e~~~l~~~i~ele~~l~ 347 (718)
+..++.....++...+.++.-..
T Consensus 261 lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 261 LQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.00 E-value=8.8 Score=36.76 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 229 EQVRGLVVQANVMQQDLVSLTSQKNELQ 256 (718)
Q Consensus 229 ~~~~~l~~~l~~~~~el~~l~~e~~~l~ 256 (718)
.++..+...+...+.....+...+.+..
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333
No 108
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.50 E-value=14 Score=37.75 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 235 VVQANVMQQDLVSLTSQKNELQLLL 259 (718)
Q Consensus 235 ~~~l~~~~~el~~l~~e~~~l~~~l 259 (718)
.+.....+.+|..|..++.++..++
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~ 250 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRC 250 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 109
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.38 E-value=7.8 Score=34.63 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 359 EASAQILALKAKVDNLQQKLD 379 (718)
Q Consensus 359 ~~~~~i~~l~~~~~~l~~~l~ 379 (718)
.+..++.+|..+-.-|...|+
T Consensus 109 ~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433
No 110
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=28 Score=39.86 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREIS 162 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~ 162 (718)
+..+...|......+....-.+..++..++..+.........+...++.++.+++
T Consensus 53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~e 107 (698)
T KOG0978|consen 53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLE 107 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444444444445555554445555555555544443
No 111
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.56 E-value=2.2 Score=40.38 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 043740 576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVG 655 (718)
Q Consensus 576 ~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~ 655 (718)
.+.++......++..+..+..++..|..++..++++++..+..+..+......|+....++.++...+...|.++...+.
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 45567777888888899999999999999999999999999999999999999999999999999999998888766654
Q ss_pred HH
Q 043740 656 EL 657 (718)
Q Consensus 656 ~~ 657 (718)
-.
T Consensus 209 l~ 210 (290)
T COG4026 209 LP 210 (290)
T ss_pred ch
Confidence 44
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.40 E-value=14 Score=35.61 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 332 NDRLLAKISQTENELSAFR 350 (718)
Q Consensus 332 ~~~l~~~i~ele~~l~~l~ 350 (718)
...|+..+...+..+.+|.
T Consensus 163 ~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 163 LLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444433
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.36 E-value=34 Score=39.85 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 181 ELEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 181 ~l~~~i~~l~~~l~~l~~e 199 (718)
.++.++..++.++......
T Consensus 266 ~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 114
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.34 E-value=21 Score=37.45 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 043740 148 KSLRDEADERQ 158 (718)
Q Consensus 148 ~~L~~~~~~l~ 158 (718)
..|...|.+-.
T Consensus 78 ~EL~~~I~egr 88 (325)
T PF08317_consen 78 RELKKYISEGR 88 (325)
T ss_pred HHHHHHHHHHH
Confidence 33444333333
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.28 E-value=1.8 Score=41.68 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA 163 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~ 163 (718)
+...+..+...|..+...+..+..++-.....+..+...+......+..+..++..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~ 127 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ 127 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544455555555555444555555544444
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.89 E-value=25 Score=37.56 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 326 RQSREENDRLLAKISQTEN 344 (718)
Q Consensus 326 ~~l~~e~~~l~~~i~ele~ 344 (718)
..|...-..|...|..++.
T Consensus 227 ~eL~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 227 EELRANESRLKNEIASAEA 245 (420)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3333333344444444443
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=19 Score=35.95 Aligned_cols=61 Identities=25% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740 106 QGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK 166 (718)
Q Consensus 106 ~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~ 166 (718)
...+..+..+......++.+++.|..++..+...+.+...++..++..+..++++|..+.+
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555555555555555555554443
No 118
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.49 E-value=19 Score=35.55 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043740 309 NQKKKLEEEIDGKIEDARQSREENDRLL 336 (718)
Q Consensus 309 ~~~~~le~~l~~~~~~~~~l~~e~~~l~ 336 (718)
....+|.+.+...-.++..++.++..|+
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3444555555544445555555554444
No 119
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.30 E-value=51 Score=40.11 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 043740 105 QQGVALEVSELRNKLM 120 (718)
Q Consensus 105 i~~~~~ei~~l~~~l~ 120 (718)
+..+...+..+...+.
T Consensus 180 ~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 180 IKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 120
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.29 E-value=18 Score=34.91 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKI 451 (718)
Q Consensus 408 ~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~ 451 (718)
..+.++..+...+...+...+...+++......+...+.++...
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555555443
No 121
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.01 E-value=26 Score=36.34 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043740 619 ESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV 654 (718)
Q Consensus 619 ~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~ 654 (718)
+......+..+..++.+++.+...+...+...+..+
T Consensus 239 F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 239 FETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333444444444444444444444444433333
No 122
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.83 E-value=44 Score=38.67 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSK-------KSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNII 644 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~-------~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~ 644 (718)
+|+....-....+..+++.+..++.+. .-.....+.+..++.+++.++..++.....|..-+.-.....-.+.
T Consensus 630 KYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLT 709 (717)
T PF09730_consen 630 KYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALT 709 (717)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555444433 3334445555555555555555555544444333333333333333
Q ss_pred HHH
Q 043740 645 KTM 647 (718)
Q Consensus 645 ~~l 647 (718)
.+|
T Consensus 710 QRL 712 (717)
T PF09730_consen 710 QRL 712 (717)
T ss_pred HHH
Confidence 333
No 123
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.55 E-value=21 Score=34.67 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEA 205 (718)
Q Consensus 172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~ 205 (718)
..++..++..++.+...+......+..+......
T Consensus 47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Ke 80 (333)
T KOG1853|consen 47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKE 80 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555544444433
No 124
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.73 E-value=24 Score=34.11 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 449 QKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQL 515 (718)
Q Consensus 449 ~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~k~le~~i~~l~~~~~~~~~~ 515 (718)
...+......+..+..+...+...+..+..+...+..+....-.++....+...-.|++++..+...
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666665555555444444455444455555444433
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.57 E-value=28 Score=37.08 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 043740 110 LEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRL 189 (718)
Q Consensus 110 ~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l 189 (718)
.++...+..+..+..+...+..........-...+.....+...+.++..++....+....+......-...++......
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 37777777777777777776665555555555566666777777777777777666555554444333333333333333
Q ss_pred HHHHHHHHHHHHHHH
Q 043740 190 KLELGSLNDQKRDLE 204 (718)
Q Consensus 190 ~~~l~~l~~e~~~l~ 204 (718)
+..+......+..|+
T Consensus 427 ~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.47 E-value=16 Score=31.87 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLL 259 (718)
Q Consensus 227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l 259 (718)
+...++.+..++..++.++..+......+..++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 127
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.84 E-value=61 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 320 GKIEDARQSREENDRLLAKISQTENELSAFRRKIA 354 (718)
Q Consensus 320 ~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~ 354 (718)
.....+..++.++..+..++..+...+.++...+.
T Consensus 491 ~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~ 525 (980)
T KOG0980|consen 491 SQAKALESLRQELALLLIELEELQRTLSNLAQSHN 525 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344455555556666666666665555554333
No 128
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.68 E-value=49 Score=35.45 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043740 181 ELEGQVSRLKLELGSLND 198 (718)
Q Consensus 181 ~l~~~i~~l~~~l~~l~~ 198 (718)
.+-.++..++.+...+..
T Consensus 268 ~i~~~i~~lk~~n~~l~e 285 (622)
T COG5185 268 IINTDIANLKTQNDNLYE 285 (622)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 129
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.25 E-value=74 Score=37.10 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
......-.+.++..++..+..+......+...+
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~ 447 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKY 447 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666555554433
No 130
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.06 E-value=17 Score=37.79 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQ 481 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~ 481 (718)
.+..+...+..+..+...+..++..++.....+..++..+..+...+...-...-...+.+.-++.........+...+.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666677777777777777776667777777777777776665555555666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 043740 482 IAERKMTELA 491 (718)
Q Consensus 482 ~l~~kl~~l~ 491 (718)
.....++.+.
T Consensus 124 ~~~~~L~~L~ 133 (314)
T PF04111_consen 124 YASNQLDRLR 133 (314)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 131
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.85 E-value=57 Score=34.59 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHHHHHHHHHHH
Q 043740 367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECP--ESRTELEQRNIKLTNKIANQQ 421 (718)
Q Consensus 367 l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~--~~~~~l~~~~~~L~~e~~~~~ 421 (718)
+...+..+...+..+..++..+..+++.-....+ ..+..+...+.+|+.++..+-
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444443322222 344555566666666655443
No 132
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.67 E-value=50 Score=35.04 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 235 VVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 235 ~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
...+..+..-...+..........|.++..++....++|.+.+.-+.
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN 265 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN 265 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555666666666666666666665555444
No 133
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.59 E-value=32 Score=31.46 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADER 157 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l 157 (718)
.+..++..+...+..|+.++..+..+..............+..+...+...++.+.++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333333333333333333333333333333
No 134
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.36 E-value=24 Score=29.77 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFL 622 (718)
Q Consensus 575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l 622 (718)
..+..+...+.+.+.....+..+++.|...+..|..+.......+..+
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555544444444444444444444444444444433333
No 135
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=83.88 E-value=39 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 043740 230 QVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEIS 267 (718)
Q Consensus 230 ~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~ 267 (718)
.+..+...+..+...+.++...-..+..........+.
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344444444444444444444433333333333333
No 136
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.67 E-value=1.2e+02 Score=37.39 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043740 135 EALSKIQAAENMNKSLRDEADERQREI 161 (718)
Q Consensus 135 ~~~~~l~e~~~~~~~L~~~~~~l~~el 161 (718)
+....+..+..+...+.+.+..+...+
T Consensus 265 k~~~~~~~l~~e~~~l~~~~~~l~~~i 291 (1294)
T KOG0962|consen 265 KLLKQVKLLDSEHKNLKKQISRLREKI 291 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444444444443
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.93 E-value=62 Score=33.49 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 043740 226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISE 268 (718)
Q Consensus 226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~ 268 (718)
.+..++..++-.+..+-++.+++..+...+......+..+++.
T Consensus 137 k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 137 KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666666666555555555555543
No 138
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.41 E-value=65 Score=33.35 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 361 SAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 361 ~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
..+...|...+..+.+.+.+++..+.-|...+..
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 3344444444444444444444444444444443
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.04 E-value=1.1e+02 Score=35.79 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 234 LVVQANVMQQDLVSLTSQKNELQLLLK 260 (718)
Q Consensus 234 l~~~l~~~~~el~~l~~e~~~l~~~l~ 260 (718)
...++..++.++..+......+.++|+
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333
No 140
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.71 E-value=52 Score=31.08 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 308 CNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK 385 (718)
Q Consensus 308 ~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~ 385 (718)
.+....|..+++.....+..+......+..+...++..|..+..++. +...+...+...+..|...++++....
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk----EaE~rAE~aERsVakLeke~DdlE~kl 181 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK----EAETRAEFAERRVAKLEKERDDLEEKL 181 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHcccHHHHHHhh
Confidence 34445556666666666666666666666666666666666664443 333344444455555555555544333
No 141
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.16 E-value=27 Score=27.56 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 316 EEIDGKIEDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 316 ~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
..+..+...+..|..+-..|......+...|..|+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr 39 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR 39 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444555555555555555555555554444444
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.79 E-value=36 Score=28.73 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLN 642 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~ 642 (718)
.+..+-..+...+..+...++..+.....|..+.+.|.+.+..++.+......++..++.++..+...++.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777777777777777666666666666666665555555444444
No 143
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.80 E-value=1.3e+02 Score=34.44 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740 127 AALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK 166 (718)
Q Consensus 127 ~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~ 166 (718)
..+...+......+.++......+...++.++..+..+..
T Consensus 164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444555544445555555555555555443
No 144
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.66 E-value=71 Score=31.51 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 323 EDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 323 ~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
.+.....+++..+..-|..++..|...+
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 145
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.59 E-value=91 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
....+...+..+..-+..+......|..++..+
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555544444
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.50 E-value=55 Score=36.51 Aligned_cols=84 Identities=25% Similarity=0.422 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 311 KKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 311 ~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
+..+...+..+..+.+.|...+..++..|..++.++..+..+..... .....+..+...+..|..++..-......|+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~-~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV-RKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555555554443211 22334455555566666666666666666655
Q ss_pred HHHHH
Q 043740 391 QIARE 395 (718)
Q Consensus 391 el~~~ 395 (718)
.+..+
T Consensus 503 ~l~~l 507 (652)
T COG2433 503 KLAEL 507 (652)
T ss_pred HHHHH
Confidence 55444
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.42 E-value=78 Score=33.90 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 584 LASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNF 629 (718)
Q Consensus 584 ~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~l 629 (718)
+...+..+..+..+...+......+.+.-..+...+.++..++.++
T Consensus 349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.26 E-value=58 Score=33.94 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 313 KLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 313 ~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
.++.+......++..++.+...+...+..++.+...+.. .....-.....+.........+...+..++......+
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~----eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDE----EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443331 1112223344455555555555666666666666666
Q ss_pred HHH
Q 043740 393 ARE 395 (718)
Q Consensus 393 ~~~ 395 (718)
..+
T Consensus 130 ~~L 132 (314)
T PF04111_consen 130 DRL 132 (314)
T ss_dssp HCH
T ss_pred HHH
Confidence 654
No 149
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.13 E-value=1.1e+02 Score=33.55 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 043740 99 QEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASAR 178 (718)
Q Consensus 99 ~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~ 178 (718)
....++|+.+..+..+|+..+ +.++..+.+....+-.+.....+|.....++...+..+.-..+. ....
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv-------~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEq----kkEe 395 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKV-------NALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQ----KKEE 395 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH----HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 179 IKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLL 258 (718)
Q Consensus 179 i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~ 258 (718)
+..++.++...............- ...+..+......+++++.....+...+-.-
T Consensus 396 c~kme~qLkkAh~~~ddar~~pe~-------------------------~d~i~~le~e~~~y~de~~kaqaevdrlLei 450 (654)
T KOG4809|consen 396 CSKMEAQLKKAHNIEDDARMNPEF-------------------------ADQIKQLEKEASYYRDECGKAQAEVDRLLEI 450 (654)
T ss_pred HHHHHHHHHHHHHhhHhhhcChhh-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhHHHH
Q 043740 259 LKGKTKEISEYLTQLKTLEEELK-KKSEVEHKLLKEREDFLMRVKDLE------------SLCNQKKKLEEEIDGKIEDA 325 (718)
Q Consensus 259 l~~~~~el~~~~~~i~~l~~e~~-~~~~~~~~l~~e~~~l~~~~~~le------------~~~~~~~~le~~l~~~~~~~ 325 (718)
+..+..+-.....+|..+..... .....-....+.+.........++ +-.-++.++-..++...+++
T Consensus 451 lkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel 530 (654)
T KOG4809|consen 451 LKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQEL 530 (654)
T ss_pred HHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhCh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 326 RQSREENDRLLAKISQTENELSAFRRKIAVQENEA 360 (718)
Q Consensus 326 ~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~ 360 (718)
......+...+..+++-+.-+.+|.......+.+.
T Consensus 531 ~~tkarl~stqqslaEke~HL~nLr~errk~Lee~ 565 (654)
T KOG4809|consen 531 DATKARLASTQQSLAEKEAHLANLRIERRKQLEEI 565 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.60 E-value=35 Score=32.61 Aligned_cols=40 Identities=33% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 242 QQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 242 ~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
+..++.+..++..|..++.....++.....++..+..+.+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444333
No 151
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=77.38 E-value=1.2e+02 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043740 148 KSLRDEADERQREISALVKV 167 (718)
Q Consensus 148 ~~L~~~~~~l~~el~~l~~~ 167 (718)
..+...++.+...++.+...
T Consensus 167 ~~lEk~Le~i~~~l~qf~~l 186 (570)
T COG4477 167 PELEKKLENIEEELSQFVEL 186 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666655443
No 152
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.96 E-value=1.4e+02 Score=34.05 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHhhhHHHHHHHH
Q 043740 117 NKLMSTSEEKAAL 129 (718)
Q Consensus 117 ~~l~~~~~e~~~l 129 (718)
..+..++.+...+
T Consensus 73 qE~rrle~e~~~l 85 (739)
T PF07111_consen 73 QELRRLEEEVRAL 85 (739)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455554433
No 153
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.66 E-value=1.1e+02 Score=32.74 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 155 DERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLND 198 (718)
Q Consensus 155 ~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~ 198 (718)
-.+...+......-+....++...+.....++..+.++.+..+.
T Consensus 278 lklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 278 LKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33343433333333344445555555555555555555554443
No 154
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.98 E-value=88 Score=31.16 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 415 NKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQ 472 (718)
Q Consensus 415 ~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~ 472 (718)
.++..+....+++......+.-++..-..++.-+...+......+..|..+++.++..
T Consensus 67 REnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 67 RENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444443333444444444444444444444444444444444444333
No 155
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.62 E-value=84 Score=34.63 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVS 187 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~ 187 (718)
+...|.+|-..+.......-.+..+.+.....+...+.....+...+....+.+..+.+........++.++..+.+.+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555555555555554444444444444455554444444444444444444444444444444445556666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 043740 188 RLKLELGSLNDQKRDL 203 (718)
Q Consensus 188 ~l~~~l~~l~~e~~~l 203 (718)
.|..++..-..+++.+
T Consensus 498 smNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666555555554
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.36 E-value=1.3e+02 Score=32.83 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043740 235 VVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKT 275 (718)
Q Consensus 235 ~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~ 275 (718)
..-+..+.+.-..+..+..+++.++..+...+....+++..
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555556666666666555555555555443
No 157
>PF13514 AAA_27: AAA domain
Probab=74.55 E-value=2.3e+02 Score=35.39 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e 199 (718)
.++..+...+..+..++..+..+
T Consensus 249 ~~~~~~~~~l~~~~~~~~~l~~~ 271 (1111)
T PF13514_consen 249 EELAEAQAQLERLQEELAQLEEE 271 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 158
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.29 E-value=41 Score=26.59 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Q 043740 360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQ 421 (718)
Q Consensus 360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~ 421 (718)
+.++|...-..|.-|+.+++.+......|..+...+.. ....+...+.+|+.+...+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~----~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH----QREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666677777777666666666655544 23345555555555554433
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.19 E-value=95 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043740 322 IEDARQSREENDRLLAKISQTEN 344 (718)
Q Consensus 322 ~~~~~~l~~e~~~l~~~i~ele~ 344 (718)
-.+++.+...+..|..-|...+.
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 160
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.86 E-value=43 Score=26.53 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRME 616 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~ 616 (718)
-+...+..++..-..+......+...+..|..+...+..+....+
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433334444444443333333333
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.46 E-value=2e+02 Score=34.16 Aligned_cols=31 Identities=6% Similarity=0.177 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
++..+..++...+.+....+.....+...+.
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555443
No 162
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.42 E-value=1.1e+02 Score=31.28 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 370 KVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 370 ~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
-++.|.+....+.+.+..|+..+..
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566777777777778888777765
No 163
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.23 E-value=1.6e+02 Score=31.73 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740 227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLK 274 (718)
Q Consensus 227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~ 274 (718)
...-+..+..-+...++.+..-..++..|..++.++...+..+.++..
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445566677777777777777777888888777777777766555544
No 164
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=69.62 E-value=11 Score=38.70 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 364 i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
+..+...+.+++..+....-.+..|+..+..
T Consensus 121 v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 121 VSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 3333334444444444444444444444433
No 165
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.45 E-value=2.6e+02 Score=33.73 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 043740 376 QKLDDMQTKKGQLD 389 (718)
Q Consensus 376 ~~l~~l~~~~~~le 389 (718)
..+......+..|+
T Consensus 732 r~l~~~e~~~~~L~ 745 (1141)
T KOG0018|consen 732 RKLQNREGEMKELE 745 (1141)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 166
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.97 E-value=1.6e+02 Score=31.01 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALN 130 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~ 130 (718)
+..++..........+.+.++..
T Consensus 86 ~rtel~~a~~~k~~~e~er~~~~ 108 (499)
T COG4372 86 LRTELGTAQGEKRAAETEREAAR 108 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 167
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=68.89 E-value=2e+02 Score=32.30 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 324 DARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 324 ~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
+...+.+++..+...|..+..++....
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e 308 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLE 308 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 168
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.69 E-value=1.8e+02 Score=31.56 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 181 ELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 181 ~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
.+..++..+..++..+......+...+
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666665554433
No 169
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=68.49 E-value=12 Score=38.45 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 362 AQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 362 ~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
..+..+...+..+...|..+...+..++..+..
T Consensus 63 s~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~ 95 (326)
T PF04582_consen 63 SDLQDLASSLADMTSELNSLSSTVTSLQSSLSS 95 (326)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333
No 170
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.97 E-value=1.8e+02 Score=31.44 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 043740 331 ENDRLLAKISQTENE 345 (718)
Q Consensus 331 e~~~l~~~i~ele~~ 345 (718)
++..++..+..+...
T Consensus 82 ~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 82 DAAELESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 171
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=67.64 E-value=1.3e+02 Score=29.60 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 240 VMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 240 ~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
.+........+.-.-+-.+|.....++..|...|..++....
T Consensus 119 ~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~ 160 (330)
T KOG2991|consen 119 KLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQ 160 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333444444444445556677777777777777776666544
No 172
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.59 E-value=58 Score=25.56 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 043740 104 EQQGVALEVSELRNK 118 (718)
Q Consensus 104 ei~~~~~ei~~l~~~ 118 (718)
-|..+..++.+|+.+
T Consensus 19 ti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 19 TIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 173
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.09 E-value=60 Score=25.50 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 583 DLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREE 625 (718)
Q Consensus 583 e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~ 625 (718)
.+..++..+..+......+......|..+...+.........+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443344444444444444444333333333
No 174
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.97 E-value=2.2e+02 Score=31.89 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
++..+...+..++.++.........+..
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 175
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.93 E-value=1.7e+02 Score=30.18 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 231 VRGLVVQANVMQQDLVSLTSQKNELQLLL 259 (718)
Q Consensus 231 ~~~l~~~l~~~~~el~~l~~e~~~l~~~l 259 (718)
++.+.+.++.-+.+...|......|..++
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL 115 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQL 115 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344444444444444444444444443
No 176
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.97 E-value=1.5e+02 Score=29.19 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 327 QSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 327 ~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
++...+..+......+..+...+.++..........+++.|...+.+.....+.+...+..|+.
T Consensus 56 q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 56 QLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555556666666666655555555555555443
No 177
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.96 E-value=1.7e+02 Score=30.21 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 409 RNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQA 469 (718)
Q Consensus 409 ~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~ 469 (718)
.+.+|-++-..+..++..+.+.+..+...+..+...+.+..+.++.+...+..+..++..+
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444444444444444333333333333333333
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.32 E-value=1.9e+02 Score=30.04 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043740 374 LQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 374 l~~~l~~l~~~~~~le~ 390 (718)
....+..+..++..++.
T Consensus 244 ~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 244 LTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 179
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.58 E-value=3.1e+02 Score=32.23 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043740 371 VDNLQQKLDDMQTKKGQ 387 (718)
Q Consensus 371 ~~~l~~~l~~l~~~~~~ 387 (718)
+..+...++.+......
T Consensus 648 l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 180
>PRK10869 recombination and repair protein; Provisional
Probab=60.91 E-value=3e+02 Score=31.37 Aligned_cols=38 Identities=5% Similarity=0.078 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740 129 LNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK 166 (718)
Q Consensus 129 l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~ 166 (718)
+...+......+.++..........++-++-.+..+..
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555444444455555555555555443
No 181
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.60 E-value=2.5e+02 Score=30.34 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 043740 293 EREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREE 331 (718)
Q Consensus 293 e~~~l~~~~~~le~~~~~~~~le~~l~~~~~~~~~l~~e 331 (718)
-+..+..++..|..+.......-..+..+......+...
T Consensus 313 ~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 313 SLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444443333333333333
No 182
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.56 E-value=1.6e+02 Score=28.12 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q 043740 371 VDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELE 407 (718)
Q Consensus 371 ~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~ 407 (718)
...+-..+..+...+..|..++.....--|..+..+.
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3444455666666666666666655443343444443
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.47 E-value=2.2e+02 Score=29.67 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 371 VDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 371 ~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
...+..-+..+......|..++..+
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444333
No 184
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.29 E-value=1.4e+02 Score=27.16 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e 199 (718)
..+..+...+...+.++..+..-
T Consensus 101 ~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 101 KQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 185
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=58.60 E-value=1.3e+02 Score=27.64 Aligned_cols=15 Identities=13% Similarity=0.260 Sum_probs=6.6
Q ss_pred HHHhhccHHHHHHHH
Q 043740 683 AELLSLGEEKREAIR 697 (718)
Q Consensus 683 ~~i~~lg~vn~~aIe 697 (718)
..|...|+.|+.||.
T Consensus 89 ~al~~akakn~~av~ 103 (155)
T PF06810_consen 89 SALKGAKAKNPKAVK 103 (155)
T ss_pred HHHHHcCCCCHHHHH
Confidence 334444444444443
No 186
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.06 E-value=1.7e+02 Score=27.83 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI 179 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i 179 (718)
.+...+..+..++..++..+..+...+.......... ..-..+-..+..|...+..|+.++..+..-+......+...+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333444455555555555544444444442222111 122223334455555566666666655544444333344444
Q ss_pred HHHHHHHHHHHH
Q 043740 180 KELEGQVSRLKL 191 (718)
Q Consensus 180 ~~l~~~i~~l~~ 191 (718)
..+...+.....
T Consensus 145 ~~~~~~anrwTD 156 (188)
T PF03962_consen 145 KIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHh
Confidence 333333333333
No 187
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=57.02 E-value=3.1e+02 Score=30.33 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESN-NSKKSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~-~~~~~l~~e~~~l~~el~~~~~~ 618 (718)
.+...|..++..+...+..++... .+-.....++..+..++..+-..
T Consensus 423 ~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLss 470 (531)
T PF15450_consen 423 SLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSS 470 (531)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544322 23333444445555554443333
No 188
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.14 E-value=2.6e+02 Score=28.91 Aligned_cols=15 Identities=0% Similarity=0.047 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHh
Q 043740 39 LINNFHDRYQSLYAH 53 (718)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (718)
+..++-++++..++.
T Consensus 19 RmreLErqqkE~ee~ 33 (302)
T PF09738_consen 19 RMRELERQQKEQEEN 33 (302)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666776666654
No 189
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=54.82 E-value=2e+02 Score=27.50 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 314 LEEEIDGKIEDARQSREENDRLLAKISQTENE 345 (718)
Q Consensus 314 le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~ 345 (718)
++..+.........+...+..|+.+|.+++..
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444443
No 190
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.72 E-value=74 Score=29.71 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 321 KIEDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 321 ~~~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
...++..+..++..+...+..+..++..|.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444
No 191
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.69 E-value=1.4e+02 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDL 203 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l 203 (718)
+..++..++..+..++.....+......+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 192
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.56 E-value=3.9e+02 Score=30.72 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhhHHHhhccHHHHHHHHHHH
Q 043740 671 LGELENKIKQQDAELLSLGEEKREAIRQLC 700 (718)
Q Consensus 671 ~~e~~~~l~~lk~~i~~lg~vn~~aIeey~ 700 (718)
+.+++..+......+..+-.|--.+|.+|.
T Consensus 602 v~qlk~ev~s~ekr~~rlk~vF~~ki~eFr 631 (716)
T KOG4593|consen 602 VAQLKKEVESAEKRNQRLKEVFASKIQEFR 631 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777888888887
No 193
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.92 E-value=86 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 313 KLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 313 ~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
+++.++.+....+..++.++..+...+..++..+..+-
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555544444333
No 194
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.22 E-value=3.9e+02 Score=30.45 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 228 TEQVRGLVVQANVMQQDLVSLTSQKNEL 255 (718)
Q Consensus 228 ~~~~~~l~~~l~~~~~el~~l~~e~~~l 255 (718)
...+......+..+...+..+......+
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 187 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQEL 187 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333334444444444444333333333
No 195
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.55 E-value=1.2e+02 Score=24.31 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 043740 610 QKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL 657 (718)
Q Consensus 610 ~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~ 657 (718)
.++..+..........-..++.++..--.++..+...+.+++......
T Consensus 11 ~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 11 QEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444455555555555555655555555444443
No 196
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.26 E-value=82 Score=29.39 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 043740 105 QQGVALEVSELRNKLMSTSEEKAAL 129 (718)
Q Consensus 105 i~~~~~ei~~l~~~l~~~~~e~~~l 129 (718)
|..+..++..++..+..+..+...|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444
No 197
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=51.81 E-value=4.2e+02 Score=30.32 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 043740 370 KVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLT 414 (718)
Q Consensus 370 ~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~ 414 (718)
.-+.+..++.+|...+...+...+.+...++..-..|-.+++.|.
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ 650 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQ 650 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 445566667777777777766666666655544444444444444
No 198
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.50 E-value=1.1e+02 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 604 QVKSLVQKLDRMEEQESFLREEISN 628 (718)
Q Consensus 604 e~~~l~~el~~~~~~~~~l~~~~~~ 628 (718)
....|..+...+.........++..
T Consensus 47 ~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 47 QREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 199
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.41 E-value=2.3e+02 Score=27.23 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 237 QANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKD 303 (718)
Q Consensus 237 ~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~~ 303 (718)
.+......+.........+...+.....++..|..++.....++.-..+.+..+..++..+...+..
T Consensus 39 ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 39 QLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3333333333444444444444444445555555555555555554444444455454444444443
No 200
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.99 E-value=1.1e+02 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=26.4
Q ss_pred hhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhhC
Q 043740 677 KIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718 (718)
Q Consensus 677 ~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~~ 718 (718)
.+..|...|-+ |....+|++.|...+.++.+.-..|...||
T Consensus 43 Ti~ELEEaiLa-gGaaaNavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 43 TIRELEEAILA-GGAAANAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 667777888888777777777666666554
No 201
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.62 E-value=1.3e+02 Score=23.93 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 321 KIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQ 391 (718)
Q Consensus 321 ~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~e 391 (718)
....+..+..++-.|+-+|--++..+...- ......+..+.-.++..+.++..++......+..++..
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~---~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLG---PESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777778888877776665322 12223344444456666666666666666655555443
No 202
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.50 E-value=1.7e+02 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043740 178 RIKELEGQVSRLKLE 192 (718)
Q Consensus 178 ~i~~l~~~i~~l~~~ 192 (718)
++..++-.+..++.+
T Consensus 78 r~E~Le~ri~tLekQ 92 (119)
T COG1382 78 RKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 203
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=49.04 E-value=2.3e+02 Score=26.57 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhHH
Q 043740 108 VALEVSELRNKLMSTS 123 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~ 123 (718)
+...+..+..++....
T Consensus 18 lk~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 204
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.91 E-value=1.3e+02 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043740 104 EQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREIS 162 (718)
Q Consensus 104 ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~ 162 (718)
.+..+...++.+..++.........|..+-+.....+...-..+..|+..++.+.+++.
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544455555555555555555555555543
No 205
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=48.09 E-value=4.2e+02 Score=29.29 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 375 QQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 375 ~~~l~~l~~~~~~le~el~~~ 395 (718)
..-+..+...+..++..+...
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~ 159 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDS 159 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 206
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.69 E-value=2.5e+02 Score=26.59 Aligned_cols=83 Identities=7% Similarity=0.050 Sum_probs=46.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhh
Q 043740 628 NFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQR 707 (718)
Q Consensus 628 ~le~~~~~le~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~ 707 (718)
+.-.+..-++...+.+.++-+. .+-... ..+.+.....++..+..-.+.++.+ .+.||+.-|+...-.+..+-
T Consensus 67 rVLkQKK~yE~q~d~L~~QsfN--MeQa~~--t~e~LKdtq~Tv~AmK~~~k~mK~~---ykkvnId~IedlQDem~Dlm 139 (218)
T KOG1655|consen 67 RVLKQKKMYENQKDSLDQQSFN--MEQANF--TAESLKDTQATVAAMKDTNKEMKKQ---YKKVNIDKIEDLQDEMEDLM 139 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HccCCHHHHHHHHHHHHHHH
Confidence 3334455566666766666554 211111 1112122233456666666666665 47899999988886666655
Q ss_pred ccchHHHHhh
Q 043740 708 TDCDYLKAEI 717 (718)
Q Consensus 708 er~~fL~~~~ 717 (718)
+.-+.++..|
T Consensus 140 d~a~EiQE~L 149 (218)
T KOG1655|consen 140 DQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 207
>PF14282 FlxA: FlxA-like protein
Probab=47.58 E-value=1.3e+02 Score=25.73 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 146 MNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQK 200 (718)
Q Consensus 146 ~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~ 200 (718)
.|..|...+..|...|..+..............+..+..+|..|..++..+..+.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544442221222234455555555555555555544443
No 208
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.80 E-value=1.1e+02 Score=23.74 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043740 576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEE 617 (718)
Q Consensus 576 ~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~ 617 (718)
++.++...++-....++.++.........+..|...+..+..
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 209
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.69 E-value=1.3e+02 Score=29.19 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 043740 38 GLINNFHDRYQSLY 51 (718)
Q Consensus 38 ~~~~~~~~~~~~~~ 51 (718)
.+.+-++++||.+|
T Consensus 88 ~~~~~l~raqrn~Y 101 (216)
T KOG1962|consen 88 HLLEALFRAQRNLY 101 (216)
T ss_pred HHHHHHHHHHhhhH
Confidence 33444555555553
No 210
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=5.8e+02 Score=29.63 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043740 577 LSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV 654 (718)
Q Consensus 577 l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~ 654 (718)
...+...+..+......+......+..+...+..-+........++...++.|..........+..+...+.+...++
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444444444444444444444444444444433333
No 211
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.10 E-value=6.6e+02 Score=29.84 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
.++..+..++...+.++.........+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444444443
No 212
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.97 E-value=6.5e+02 Score=29.40 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043740 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKG 397 (718)
Q Consensus 325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~ 397 (718)
+..+..++..+...+..+...+..+...+..........+..+......+.... .-......|-.++..+++
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444444444443333333333333333333333222 222445555555555543
No 213
>PRK04406 hypothetical protein; Provisional
Probab=40.90 E-value=1.8e+02 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 573 LANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619 (718)
Q Consensus 573 ~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~ 619 (718)
++.++.++...++-....++.++.........+..|..++..+..++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566555555555555555555554444433
No 214
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.85 E-value=2.1e+02 Score=23.84 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 043740 133 YQEALSKIQAAENMNKSLRDEADERQREISALV 165 (718)
Q Consensus 133 ~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~ 165 (718)
|......+..+...+..+...+..+..-+..+.
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333333
No 215
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=40.35 E-value=5.2e+02 Score=28.13 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 043740 478 TSLQIAERKMTELAEDFR 495 (718)
Q Consensus 478 ~~~~~l~~kl~~l~~~~~ 495 (718)
.+....+.++-.+..+|.
T Consensus 485 rEKe~~EqefLslqeEfQ 502 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQ 502 (527)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334434444443
No 216
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=40.30 E-value=2.2e+02 Score=23.75 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=32.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 571 GDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLRE 624 (718)
Q Consensus 571 ~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~ 624 (718)
..++..+..+..++......+-......+.+..++..|...+..-...+..+..
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345566666666666666666666666666666666666665555444433333
No 217
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.06 E-value=5.1e+02 Score=27.93 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhcCCcc---------cchhhhhh----hHHHHHHHHHHHHHHHHHHhh
Q 043740 6 AEIEDQVKKILKLVRSKDNG---------ITKESKRE----SELVGLINNFHDRYQSLYAHY 54 (718)
Q Consensus 6 ~~~~~~vk~~~~~i~~~~~~---------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~ 54 (718)
+.-|..|-.+|+++.. +|. |++-+++- ..|...++..++.++.+....
T Consensus 25 ~~rd~nv~eyLkl~~~-aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 25 TARDENVAEYLKLASN-ADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHhhHHHHHHHhhh-ccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4568889999999884 543 45544444 445566677777777777743
No 218
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.04 E-value=6e+02 Score=28.78 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043740 113 SELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLE 192 (718)
Q Consensus 113 ~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~ 192 (718)
..+...|..++-.++.|..++.-+...+...-.+|..|+..|..-...+..-.+.... ---.+..++.+--+|-.+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq----ellsrtsLETqKlDLmae 182 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ----ELLSRTSLETQKLDLMAE 182 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH----HHHhhhhHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043740 193 LGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQ 272 (718)
Q Consensus 193 l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~ 272 (718)
+..|.-..-.++. +-...+.++...+..+..+. .........+-.+....
T Consensus 183 vSeLKLkltalEk------------------------eq~e~E~K~R~se~l~qevn------~~kv~e~~~erlqye~k 232 (861)
T KOG1899|consen 183 VSELKLKLTALEK------------------------EQNETEKKLRLSENLMQEVN------QSKVGEVVQERLQYETK 232 (861)
T ss_pred HHHhHHHHHHHHH------------------------HhhhHHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 273 LKTLEEELKKKSEVEHKLLKEREDFLMRVKDLE-----SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTEN 344 (718)
Q Consensus 273 i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~~le-----~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~ 344 (718)
+...+.++..+++....-..++..+...+-..- ..-.+.+.+..-+........+...-++.+...+..+..
T Consensus 233 lkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k 309 (861)
T KOG1899|consen 233 LKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDK 309 (861)
T ss_pred cccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhh
No 219
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.59 E-value=3.1e+02 Score=25.34 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 043740 95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAAL--NSEYQEALSKIQAAENMNKSLRDEADERQR 159 (718)
Q Consensus 95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l--~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~ 159 (718)
.+++..+..+|..+...+..+.........++..| ..-+.+.+.++.++...+....+++..+..
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 220
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.28 E-value=1.9e+02 Score=22.71 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 574 ANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619 (718)
Q Consensus 574 e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~ 619 (718)
+.++.++...++-....++.++.........+..+..++..+..++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566555555555555555555554444443
No 221
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.54 E-value=4.2e+02 Score=26.50 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=5.4
Q ss_pred HhhhhhhhHHH
Q 043740 675 ENKIKQQDAEL 685 (718)
Q Consensus 675 ~~~l~~lk~~i 685 (718)
..++..++..+
T Consensus 130 ~~Rl~~L~~~l 140 (251)
T PF11932_consen 130 QERLARLRAML 140 (251)
T ss_pred HHHHHHHHHhh
Confidence 44455554444
No 222
>PRK02119 hypothetical protein; Provisional
Probab=38.32 E-value=2e+02 Score=22.68 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 574 ANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619 (718)
Q Consensus 574 e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~ 619 (718)
+.++.++...++-....++.++.........+..+..++..+..++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555444444433
No 223
>PRK00295 hypothetical protein; Provisional
Probab=38.05 E-value=1.9e+02 Score=22.40 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043740 576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 576 ~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~ 618 (718)
++.++...++-....++.++.........+..+..++..+..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554444444444433
No 224
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.76 E-value=6.2e+02 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 176 SARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 176 ~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
..++..+..++...+.++.........+.
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 225
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.46 E-value=2.6e+02 Score=23.81 Aligned_cols=53 Identities=13% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 043740 598 KKSLQQQVKSLVQKLDRMEEQESFL--REEISNFEAKLGKQGGDKLNIIKTMSEL 650 (718)
Q Consensus 598 ~~~l~~e~~~l~~el~~~~~~~~~l--~~~~~~le~~~~~le~e~~~~~~~l~e~ 650 (718)
...+...+......+..++..+..+ ...+|.+...++++.+++..+..++.-+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444445555555566666666 6667777777777777776666665543
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.08 E-value=3.1e+02 Score=24.54 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 043740 367 LKAKVDNLQQKLDDMQ 382 (718)
Q Consensus 367 l~~~~~~l~~~l~~l~ 382 (718)
+...+..+...+..+.
T Consensus 106 l~~~~~~l~~~l~~~~ 121 (140)
T PRK03947 106 LEKALEKLEEALQKLA 121 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 227
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.68 E-value=2.9e+02 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043740 176 SARIKELEGQVSRLKLELGSLN 197 (718)
Q Consensus 176 ~~~i~~l~~~i~~l~~~l~~l~ 197 (718)
..++.-++..|..++.....+.
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 228
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.42 E-value=2.9e+02 Score=24.12 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQKRDLEA 205 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e~~~l~~ 205 (718)
.-..++...+..++..+..+......+..
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~ 99 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLRE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 229
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.55 E-value=4.8e+02 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740 241 MQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLK 274 (718)
Q Consensus 241 ~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~ 274 (718)
++++|..|..-+...+..|.....-+.+.+..|+
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhh
Confidence 3333444444444444444444444444444444
No 230
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.40 E-value=6.7e+02 Score=27.94 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 043740 36 LVGLINNFHDRYQSLYAHYNLL 57 (718)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~~~~ 57 (718)
+...+.++-+..|+|.+-|.++
T Consensus 46 fs~~lhe~a~~~~~le~~~~~~ 67 (518)
T PF10212_consen 46 FSQYLHENASYLRPLEESFLSL 67 (518)
T ss_pred HHHHHHHhHHHHhHHHHHHHHH
Confidence 4455556666666666665555
No 231
>PRK00736 hypothetical protein; Provisional
Probab=35.40 E-value=2.1e+02 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619 (718)
Q Consensus 575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~ 619 (718)
.++.++...++-....++.++.........+..|..++..+..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555444444443
No 232
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=34.54 E-value=6.4e+02 Score=27.50 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 408 QRNIKLTNKIANQQKIMKNQEDKIADQ 434 (718)
Q Consensus 408 ~~~~~L~~e~~~~~~~le~~~~~~~~l 434 (718)
.-..+|......+...+.++.+-+..+
T Consensus 206 ~~k~~L~~~sd~Ll~kVdDLQD~VE~L 232 (424)
T PF03915_consen 206 SGKKKLSEESDRLLTKVDDLQDLVEDL 232 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 233
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.45 E-value=4.2e+02 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 043740 601 LQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE 649 (718)
Q Consensus 601 l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e 649 (718)
+...+..++..+..++.+...+..........+.++....+.+...+..
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333333333334444444444444444333
No 234
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.95 E-value=2.2e+02 Score=21.92 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043740 599 KSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 599 ~~l~~e~~~l~~el~~~~~~ 618 (718)
+.+..+...+..+-...+++
T Consensus 49 eaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 49 EALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 235
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.95 E-value=1.7e+02 Score=20.61 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 043740 584 LASAKNWVTESNNSKKSLQQQVKSLVQKLDRM 615 (718)
Q Consensus 584 ~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~ 615 (718)
...++..++.+..+...|..+...|.+++..+
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 236
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=33.06 E-value=7.5e+02 Score=27.82 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 043740 97 AHQEISIEQQGVALEVSELRNKLMST 122 (718)
Q Consensus 97 ~~~~~~~ei~~~~~ei~~l~~~l~~~ 122 (718)
....+.-++..+..++..++..+..+
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555
No 237
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.89 E-value=1.5e+02 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 374 LQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 374 l~~~l~~l~~~~~~le~el~~ 394 (718)
+.+.+..+...+..++.....
T Consensus 170 ~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 334444444555555555543
No 238
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.70 E-value=6.4e+02 Score=26.95 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHhh
Q 043740 93 NFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNK-SLRDEADERQREISALVK 166 (718)
Q Consensus 93 ~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~-~L~~~~~~l~~el~~l~~ 166 (718)
.+...+..+...-.-+..++++++.+...+.++.--+..---.++.....-+..+. .|-..+..+..+-..+..
T Consensus 47 ~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~ 121 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLAT 121 (552)
T ss_pred HHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccch
Confidence 33344444444444566677777777777766654442111122222222223332 444455555555444443
No 239
>PRK04325 hypothetical protein; Provisional
Probab=32.65 E-value=2.5e+02 Score=22.17 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043740 575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~ 618 (718)
.++.++...++-....++.++.........+..|..++..+..+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444444444444333
No 240
>PRK00846 hypothetical protein; Provisional
Probab=32.34 E-value=2.6e+02 Score=22.30 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 574 ANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619 (718)
Q Consensus 574 e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~ 619 (718)
+.++.++...++-....++.++.........+..+...+..+..++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555444444443
No 241
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.11 E-value=1.6e+02 Score=31.45 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRD 202 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~ 202 (718)
+..++.+++..|..++..+..+......
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 4455555555555555555444443333
No 242
>PF14992 TMCO5: TMCO5 family
Probab=32.00 E-value=5.6e+02 Score=26.05 Aligned_cols=28 Identities=32% Similarity=0.550 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 326 RQSREENDRLLAKISQTENELSAFRRKI 353 (718)
Q Consensus 326 ~~l~~e~~~l~~~i~ele~~l~~l~~~~ 353 (718)
..+.+.+..+-.+|...+..+++|..++
T Consensus 14 Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 14 QRLDEANQSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.79 E-value=4.9e+02 Score=25.31 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHhhHh-hHHHHHHHHHHHHHH-HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----
Q 043740 543 SRKMRDMLEP-GNKALLAMESVVKKL-EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRM----- 615 (718)
Q Consensus 543 ~~~~~~~~e~-~~~~~~~~e~~~~~~-e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~----- 615 (718)
|.++.+.+.. ++..++.++.-...+ ..+..++..+..+...+.........+......+...+..+.......
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ 82 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGR 82 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHhHHHHHhhhhhhhHHHhhccHHH
Q 043740 616 EEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAE---LLTLGELENKIKQQDAELLSLGEEK 692 (718)
Q Consensus 616 ~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~---~~~~~e~~~~l~~lk~~i~~lg~vn 692 (718)
..-...+-.+...++..+..+...++.....+..+...+..++..+..+... +......-+--......+..++ .
T Consensus 83 edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~--~ 160 (221)
T PF04012_consen 83 EDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS--V 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--c
Q ss_pred HHHHHHHHHHHHhhhccchHHHH
Q 043740 693 REAIRQLCVFIDHQRTDCDYLKA 715 (718)
Q Consensus 693 ~~aIeey~~~~~~~~er~~fL~~ 715 (718)
-++...|. ++.+|.+-+..
T Consensus 161 ~~a~~~~e----r~e~ki~~~ea 179 (221)
T PF04012_consen 161 SSAMDSFE----RMEEKIEEMEA 179 (221)
T ss_pred cchHHHHH----HHHHHHHHHHH
No 244
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.47 E-value=6.9e+02 Score=26.94 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 043740 42 NFHDRYQSLYAHYNLLKG 59 (718)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (718)
-|...=+..|....+-.|
T Consensus 119 ~v~skPrEfA~likNkFG 136 (395)
T PF10267_consen 119 AVVSKPREFAHLIKNKFG 136 (395)
T ss_pred HHHhCcHHHHhcccCCCC
Confidence 455555666665444443
No 245
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.43 E-value=2.2e+02 Score=21.08 Aligned_cols=25 Identities=0% Similarity=0.351 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 366 ALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 366 ~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
.+...+..++.++.++...+..++.
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 246
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.14 E-value=7.5e+02 Score=27.23 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 311 KKKLEEEIDGKIEDARQSREENDRLLAKISQTEN 344 (718)
Q Consensus 311 ~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~ 344 (718)
+.++..++.....+-+.+..+++.|+.+-..+..
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333344433334444444444444444443333
No 247
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.82 E-value=3.4e+02 Score=23.19 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043740 94 FRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQ 134 (718)
Q Consensus 94 ~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~ 134 (718)
+.+.+..+...+..+-.++..|+..+..+.++...|..+-+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666555555555543333
No 248
>PLN02939 transferase, transferring glycosyl groups
Probab=30.61 E-value=1.1e+03 Score=28.89 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 324 DARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 324 ~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
++..+.++.-.|+..+..++.++.... +....+-.+.+...-+...+.++++.+...+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEVA--------ETEERVFKLEKERSLLDASLRELESKFIVAQEDV 287 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455555555555555554443322 2333444454555555555555555444444433
No 249
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.53 E-value=3.8e+02 Score=23.67 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 043740 603 QQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKK 653 (718)
Q Consensus 603 ~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~ 653 (718)
..++.+...+++..+........+..+...+..+..+++.+...+..++.+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333333333
No 250
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.48 E-value=9.1e+02 Score=28.00 Aligned_cols=43 Identities=33% Similarity=0.455 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSA 348 (718)
Q Consensus 306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~ 348 (718)
.+......++..+..+.+.+....+.+..++.++.-.+..+..
T Consensus 88 ~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 88 SIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred CcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHh
Confidence 3334445677888888888888888888888888777665543
No 251
>PRK11281 hypothetical protein; Provisional
Probab=30.42 E-value=1.2e+03 Score=29.24 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 355 VQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 355 ~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
........+++.+..+.......++.+......+.+.+.-
T Consensus 292 ~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 292 QRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555555543
No 252
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.20 E-value=6.4e+02 Score=26.15 Aligned_cols=7 Identities=57% Similarity=0.900 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 043740 441 LEDKIAD 447 (718)
Q Consensus 441 l~~~i~~ 447 (718)
+++.++|
T Consensus 206 LEsKVqD 212 (401)
T PF06785_consen 206 LESKVQD 212 (401)
T ss_pred HHHHHHH
Confidence 3333333
No 253
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=3.8e+02 Score=23.40 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043740 237 QANVMQQDLVSLTSQKNELQ 256 (718)
Q Consensus 237 ~l~~~~~el~~l~~e~~~l~ 256 (718)
++..++.++..+-..+..+.
T Consensus 14 q~QqLq~ql~~~~~qk~~le 33 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLE 33 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333333333
No 254
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.67 E-value=2.6e+02 Score=21.48 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=25.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 313 KLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKI 353 (718)
Q Consensus 313 ~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~ 353 (718)
.|+.++..+......+..++..|......+..+-..|.++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777777777777777666655555333
No 255
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.34 E-value=5.9e+02 Score=25.45 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHH
Q 043740 334 RLLAKISQTENEL 346 (718)
Q Consensus 334 ~l~~~i~ele~~l 346 (718)
.|...+.++...+
T Consensus 79 ~Le~e~~e~~~~i 91 (246)
T PF00769_consen 79 QLEQELREAEAEI 91 (246)
T ss_dssp --HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 256
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.33 E-value=4.3e+02 Score=25.00 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 315 EEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 315 e~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
..........+..|...+...+..+..+-..|..++..+......+......+...+..-...+..++.++..+...+..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
No 257
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.10 E-value=6.6e+02 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043740 367 LKAKVDNLQQKLDDMQTKKGQL 388 (718)
Q Consensus 367 l~~~~~~l~~~l~~l~~~~~~l 388 (718)
....+..++..+.+++..+..+
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333
No 258
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.56 E-value=6.4e+02 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMK 425 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le 425 (718)
.+..+...+.+|..+...+.-++.
T Consensus 336 plvkIkqavsKLk~et~~mnv~ig 359 (384)
T KOG0972|consen 336 PLVKIKQAVSKLKEETQTMNVQIG 359 (384)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhee
Confidence 445555566666666555544433
No 259
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.18 E-value=2.5e+02 Score=20.83 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHH
Q 043740 483 AERKMT 488 (718)
Q Consensus 483 l~~kl~ 488 (718)
....|+
T Consensus 43 AN~RlD 48 (56)
T PF04728_consen 43 ANQRLD 48 (56)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 260
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=28.07 E-value=2.9e+02 Score=21.56 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043740 572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~ 618 (718)
.|......+......++..+.....+...|...+..|..++..+...
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444444444444444444433
No 261
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.52 E-value=5.6e+02 Score=28.56 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740 423 IMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGS 476 (718)
Q Consensus 423 ~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~ 476 (718)
++.+.+.+...+..+|..+...++++++.+....-++..|...+.+.+..+.++
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444555556666666777776666655556666666666655555543
No 262
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.30 E-value=3.8e+02 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043740 366 ALKAKVDNLQQKLDDMQTKKGQLDSQIAREKG 397 (718)
Q Consensus 366 ~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~ 397 (718)
.+......+...+..+......++.++..+-.
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555433
No 263
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.03 E-value=5.1e+02 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 423 IMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESK 467 (718)
Q Consensus 423 ~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~ 467 (718)
.+..++.....++-.+.-+...-..++...+.++..+..+...+.
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444444444444444443333
No 264
>PRK11281 hypothetical protein; Provisional
Probab=26.61 E-value=1.3e+03 Score=28.73 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=3.9
Q ss_pred HHHHHHHHhhh
Q 043740 111 EVSELRNKLMS 121 (718)
Q Consensus 111 ei~~l~~~l~~ 121 (718)
..+.++..+..
T Consensus 81 ~~~~L~k~l~~ 91 (1113)
T PRK11281 81 ETEQLKQQLAQ 91 (1113)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 265
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.34 E-value=7.1e+02 Score=25.39 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 326 RQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 326 ~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
..|..+...+...+..+..++..+++.+...+.++...+..+...+..+...+..+..++..+...+
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555555555555555555555444433
No 266
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.14 E-value=4e+02 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 362 AQILALKAKVDNLQQKLDDMQTKKGQLDSQ 391 (718)
Q Consensus 362 ~~i~~l~~~~~~l~~~l~~l~~~~~~le~e 391 (718)
.++..+...+..+...+..+......+...
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433
No 267
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.06 E-value=6.4e+02 Score=24.82 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Q 043740 558 LAMESVVKKL-EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ------------ESFLRE 624 (718)
Q Consensus 558 ~~~e~~~~~~-e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~------------~~~l~~ 624 (718)
..+-...++. +-..-+...|.+....+..++..+.........+...+..+......++.+ ...+-.
T Consensus 13 a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~ 92 (225)
T COG1842 13 ANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALE 92 (225)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHH-HHHHHHHHHH
Q 043740 625 EISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKR-EAIRQLCVFI 703 (718)
Q Consensus 625 ~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~-~aIeey~~~~ 703 (718)
+...++.....+...+......+..+...+..++..+..+......+..-...-+.-..--.-+|.+.. +|...|.
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fe--- 169 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFE--- 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHH---
Q ss_pred HhhhccchHHHH
Q 043740 704 DHQRTDCDYLKA 715 (718)
Q Consensus 704 ~~~~er~~fL~~ 715 (718)
+++++.+-+..
T Consensus 170 -r~e~kiee~ea 180 (225)
T COG1842 170 -RMEEKIEEREA 180 (225)
T ss_pred -HHHHHHHHHHH
No 268
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=25.05 E-value=1.6e+02 Score=27.09 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043740 4 SKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNL 56 (718)
Q Consensus 4 ~~~~~~~~vk~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 56 (718)
.+.+|..++.++-..+....|.... .|.+.++|.+|+..+.+..+.-+.
T Consensus 112 ~L~e~snki~kLe~~~k~L~d~Iv~----~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 112 TLEEISNKIRKLETEVKKLKDNIVT----EKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhccc----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888877776543 389999999999998887765443
No 269
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.01 E-value=9.7e+02 Score=26.55 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 043740 439 KNLEDKIADQQKI 451 (718)
Q Consensus 439 ~~l~~~i~~l~~~ 451 (718)
..+..++..++..
T Consensus 143 ~Pl~e~l~~f~~~ 155 (475)
T PRK10361 143 SPLREQLDGFRRQ 155 (475)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 270
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.50 E-value=4.5e+02 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043740 576 RLSKMSDDLASAKNWVTE 593 (718)
Q Consensus 576 ~l~~~~~e~~~l~~~l~~ 593 (718)
.+..+..++..++..+..
T Consensus 16 ~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQE 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 271
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.41 E-value=7.5e+02 Score=25.02 Aligned_cols=103 Identities=8% Similarity=0.141 Sum_probs=0.0
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 548 DMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEIS 627 (718)
Q Consensus 548 ~~~e~~~~~~~~~e~~~~~~e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~ 627 (718)
.+++.+.-.+.=|......+-....+.........+.......+.....+.+.+..++.....++.++..++..+..++.
T Consensus 159 ~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 159 KDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHH
Q 043740 628 NFEAKLGKQGGDKLNIIKTMSEL 650 (718)
Q Consensus 628 ~le~~~~~le~e~~~~~~~l~e~ 650 (718)
+++.+-+++...+..+...+..|
T Consensus 239 ~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 239 ELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 272
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.40 E-value=1e+03 Score=26.60 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
+-.+|-+++..+..+...+...+.+...+.
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 273
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.01 E-value=1.2e+03 Score=27.34 Aligned_cols=8 Identities=50% Similarity=0.779 Sum_probs=4.8
Q ss_pred HHHHHHHh
Q 043740 46 RYQSLYAH 53 (718)
Q Consensus 46 ~~~~~~~~ 53 (718)
.|++|.|+
T Consensus 110 iyqalcEH 117 (861)
T PF15254_consen 110 IYQALCEH 117 (861)
T ss_pred HHHHHhhh
Confidence 35666665
No 274
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=24.01 E-value=5.3e+02 Score=23.11 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=11.3
Q ss_pred HHHHhhhhhhhHHHhhccH
Q 043740 672 GELENKIKQQDAELLSLGE 690 (718)
Q Consensus 672 ~e~~~~l~~lk~~i~~lg~ 690 (718)
..+...+...+..+.+||.
T Consensus 94 ~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 94 GDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HhHHHHHHHHHHHHHHcCC
Confidence 3444555556666777775
No 275
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.87 E-value=7.7e+02 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=4.6
Q ss_pred HHhhhHHHHHHHH
Q 043740 117 NKLMSTSEEKAAL 129 (718)
Q Consensus 117 ~~l~~~~~e~~~l 129 (718)
..+..+....+.+
T Consensus 27 ~~l~~~~~~~~~l 39 (302)
T PF10186_consen 27 SELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 276
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.26 E-value=6.2e+02 Score=28.28 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 043740 597 SKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE 649 (718)
Q Consensus 597 ~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e 649 (718)
+..++....+.|.+++.++...+..+...+-+....+..++..++..+.++.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 33444444445555555555554444444444444444555555555444443
No 277
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=22.64 E-value=1.1e+03 Score=26.28 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 358 NEASAQILALKAKVDNLQQKLDDM 381 (718)
Q Consensus 358 ~~~~~~i~~l~~~~~~l~~~l~~l 381 (718)
.++..++..++..+..-....++.
T Consensus 127 qe~~~rl~~L~~~Lrqee~~re~a 150 (531)
T PF15450_consen 127 QEAGLRLSKLQDMLRQEEQGREDA 150 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555655544444333333
No 278
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.46 E-value=6.8e+02 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 327 QSREENDRLLAKISQTENELSAFR 350 (718)
Q Consensus 327 ~l~~e~~~l~~~i~ele~~l~~l~ 350 (718)
++......+...+.+++.++..++
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~ 71 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSR 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554433
No 279
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=21.43 E-value=8e+02 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 370 KVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 370 ~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
....+...+......+..+...+.
T Consensus 114 ~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 114 RPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444444333
No 280
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.74 E-value=5.3e+02 Score=21.91 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 043740 105 QQGVALEVSELRNKLMSTSEEKAAL 129 (718)
Q Consensus 105 i~~~~~ei~~l~~~l~~~~~e~~~l 129 (718)
+..+...+......+..++.+...+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444444444444
No 281
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.27 E-value=1.1e+03 Score=25.61 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 437 IIKNLEDKIADQQKIMKNQEDTVEK-----LTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLED 500 (718)
Q Consensus 437 e~~~l~~~i~~l~~~l~~~~~~~~~-----l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~k~le~ 500 (718)
....+-..+++|+..++.+...+.. ....+..+...+..+...+..+..-+..+.-.|++-++.
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~ 282 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES 282 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3444444455555444444433221 123444444444445555555555555444555554444
No 282
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.06 E-value=4e+02 Score=20.21 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 043740 140 IQAAENMNKSLRDEADERQREI 161 (718)
Q Consensus 140 l~e~~~~~~~L~~~~~~l~~el 161 (718)
|.+....+..|...+..|..++
T Consensus 34 LqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 34 LQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 283
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=20.03 E-value=5.4e+02 Score=21.76 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=2.9
Q ss_pred hhhhhHHH
Q 043740 635 KQGGDKLN 642 (718)
Q Consensus 635 ~le~e~~~ 642 (718)
+++.++++
T Consensus 44 k~eqE~dS 51 (102)
T PF10205_consen 44 KLEQENDS 51 (102)
T ss_pred HHHHHHHH
Confidence 33333333
Done!