Query 043740
Match_columns 718
No_of_seqs 437 out of 1561
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 2.6E-05 8.8E-10 78.7 45.9 53 108-160 11-63 (284)
2 1c1g_A Tropomyosin; contractIl 99.0 2.7E-05 9.3E-10 78.5 45.6 71 95-165 5-75 (284)
3 1i84_S Smooth muscle myosin he 98.5 2.7E-07 9.3E-12 111.9 11.0 61 100-160 868-928 (1184)
4 1i84_S Smooth muscle myosin he 98.5 2.9E-07 1E-11 111.6 11.2 25 369-393 1109-1133(1184)
5 2v71_A Nuclear distribution pr 97.2 0.11 3.9E-06 47.4 22.6 69 139-207 11-79 (189)
6 3na7_A HP0958; flagellar bioge 97.1 0.26 9E-06 48.4 25.4 32 363-394 54-85 (256)
7 2v71_A Nuclear distribution pr 96.8 0.27 9.4E-06 44.9 22.8 65 402-466 89-153 (189)
8 2fxo_A Myosin heavy chain, car 96.1 0.51 1.7E-05 40.8 17.6 77 93-169 17-93 (129)
9 3vkg_A Dynein heavy chain, cyt 94.9 12 0.00041 49.4 30.8 56 111-166 1900-1955(3245)
10 3vkg_A Dynein heavy chain, cyt 93.8 24 0.00083 46.7 32.2 22 462-483 2068-2089(3245)
11 3o0z_A RHO-associated protein 92.6 5.3 0.00018 35.5 21.1 33 364-396 50-82 (168)
12 3o0z_A RHO-associated protein 92.5 5.5 0.00019 35.4 23.5 24 106-129 9-32 (168)
13 2dfs_A Myosin-5A; myosin-V, in 92.3 4.5 0.00015 48.1 19.1 66 325-390 986-1051(1080)
14 3tnu_B Keratin, type II cytosk 91.8 2.6 8.9E-05 36.3 12.3 36 360-395 34-69 (129)
15 2dfs_A Myosin-5A; myosin-V, in 91.2 5 0.00017 47.7 17.9 10 334-343 988-997 (1080)
16 2v66_B Nuclear distribution pr 91.1 5.7 0.00019 32.8 14.8 58 333-390 6-63 (111)
17 3tnu_A Keratin, type I cytoske 91.1 3 0.0001 36.0 11.9 36 360-395 36-71 (131)
18 3ol1_A Vimentin; structural ge 90.4 4.8 0.00016 34.0 12.3 75 317-395 21-95 (119)
19 1x79_B RAB GTPase binding effe 88.6 8.2 0.00028 31.8 11.8 37 357-393 40-76 (112)
20 3oja_B Anopheles plasmodium-re 87.8 9.9 0.00034 42.1 16.5 9 406-414 507-515 (597)
21 3u1c_A Tropomyosin alpha-1 cha 87.8 10 0.00034 30.9 14.5 68 590-657 10-77 (101)
22 3hnw_A Uncharacterized protein 87.1 8.5 0.00029 33.3 11.8 27 108-134 73-99 (138)
23 3swk_A Vimentin; cytoskeleton, 86.6 9.5 0.00032 30.0 10.8 71 322-392 6-79 (86)
24 3u59_A Tropomyosin beta chain; 85.6 13 0.00045 30.2 14.5 70 588-657 8-77 (101)
25 3s4r_A Vimentin; alpha-helix, 84.7 14 0.00047 29.6 13.2 31 313-343 13-43 (93)
26 3bas_A Myosin heavy chain, str 82.8 16 0.00055 28.9 11.0 63 95-164 20-82 (89)
27 3hnw_A Uncharacterized protein 82.8 13 0.00044 32.2 11.0 62 579-640 72-133 (138)
28 3ol1_A Vimentin; structural ge 82.7 20 0.0007 30.0 14.6 37 584-620 22-58 (119)
29 2v4h_A NF-kappa-B essential mo 82.5 18 0.00063 29.4 12.2 39 306-344 66-104 (110)
30 2eqb_B RAB guanine nucleotide 82.3 17 0.00059 29.0 12.9 65 593-657 9-74 (97)
31 1ic2_A Tropomyosin alpha chain 81.2 17 0.00058 28.1 10.9 45 605-649 22-66 (81)
32 3bas_A Myosin heavy chain, str 81.0 19 0.00064 28.5 10.7 49 581-629 20-68 (89)
33 2eqb_B RAB guanine nucleotide 76.9 27 0.00091 27.9 13.2 53 109-168 11-63 (97)
34 3swk_A Vimentin; cytoskeleton, 76.2 26 0.00089 27.5 10.8 51 441-491 26-76 (86)
35 2e7s_A RAB guanine nucleotide 75.6 14 0.00046 31.6 8.4 96 370-469 33-129 (135)
36 2jee_A YIIU; FTSZ, septum, coi 75.0 26 0.0009 26.9 11.4 22 608-629 53-74 (81)
37 3ghg_A Fibrinogen alpha chain; 74.8 47 0.0016 35.0 13.9 16 181-196 61-76 (562)
38 2e7s_A RAB guanine nucleotide 74.5 29 0.00098 29.6 10.2 53 106-158 28-80 (135)
39 3cvf_A Homer-3, homer protein 74.4 9.7 0.00033 29.2 6.5 10 683-692 69-78 (79)
40 2jee_A YIIU; FTSZ, septum, coi 74.2 28 0.00095 26.8 10.9 64 100-163 10-73 (81)
41 2efr_A General control protein 73.7 47 0.0016 29.2 25.7 18 377-394 134-151 (155)
42 1l8d_A DNA double-strand break 71.1 42 0.0014 27.6 10.9 39 368-406 16-57 (112)
43 2v66_B Nuclear distribution pr 71.0 42 0.0015 27.6 16.0 56 403-458 37-92 (111)
44 2ocy_A RAB guanine nucleotide 70.4 55 0.0019 28.6 20.9 30 367-396 113-142 (154)
45 3jsv_C NF-kappa-B essential mo 67.2 45 0.0015 26.4 10.3 48 301-348 39-86 (94)
46 3q8t_A Beclin-1; autophagy, AT 66.3 49 0.0017 26.5 13.9 71 573-643 9-79 (96)
47 3ghg_A Fibrinogen alpha chain; 65.1 1E+02 0.0034 32.6 13.8 21 108-128 62-82 (562)
48 1x79_B RAB GTPase binding effe 64.4 59 0.002 26.7 12.0 95 102-199 5-99 (112)
49 2ocy_A RAB guanine nucleotide 61.4 84 0.0029 27.5 21.1 37 435-471 107-143 (154)
50 3i00_A HIP-I, huntingtin-inter 58.6 44 0.0015 28.0 8.2 19 363-381 41-59 (120)
51 4h22_A Leucine-rich repeat fli 57.0 75 0.0026 25.5 12.3 68 408-475 16-83 (103)
52 3mq9_A Bone marrow stromal ant 54.4 2.1E+02 0.0072 30.1 15.2 48 155-202 421-468 (471)
53 2b9c_A Striated-muscle alpha t 51.4 1.2E+02 0.0042 26.3 16.3 9 633-641 82-90 (147)
54 3l4q_C Phosphatidylinositol 3- 49.8 1.4E+02 0.0048 26.6 18.0 57 246-302 13-69 (170)
55 2zqm_A Prefoldin beta subunit 48.5 1.1E+02 0.0038 25.0 13.0 30 175-204 75-104 (117)
56 3q8t_A Beclin-1; autophagy, AT 47.6 1.1E+02 0.0036 24.5 14.9 21 409-429 12-32 (96)
57 4emc_A Monopolin complex subun 46.0 1.4E+02 0.0047 27.0 9.6 47 235-281 12-58 (190)
58 1fxk_A Prefoldin; archaeal pro 43.1 1.3E+02 0.0044 24.2 12.6 29 175-203 70-98 (107)
59 4h22_A Leucine-rich repeat fli 41.8 1.4E+02 0.0046 24.1 9.8 46 596-641 23-68 (103)
60 4gkw_A Spindle assembly abnorm 41.0 1.6E+02 0.0053 24.6 21.3 132 238-369 13-144 (167)
61 3s4r_A Vimentin; alpha-helix, 38.1 1.5E+02 0.0051 23.5 12.1 72 127-204 12-83 (93)
62 1deq_A Fibrinogen (alpha chain 37.3 3.4E+02 0.012 27.4 16.2 15 108-122 65-79 (390)
63 2w83_C C-JUN-amino-terminal ki 35.0 1.4E+02 0.0049 22.4 9.8 42 437-478 24-65 (77)
64 1gk4_A Vimentin; intermediate 33.9 1.6E+02 0.0055 22.7 12.4 10 341-350 12-21 (84)
65 3efg_A Protein SLYX homolog; x 33.8 1.2E+02 0.0041 23.2 6.4 45 574-618 13-57 (78)
66 3jsv_C NF-kappa-B essential mo 32.6 1.8E+02 0.0063 22.9 10.4 21 138-158 16-36 (94)
67 3mq7_A Bone marrow stromal ant 31.6 2.1E+02 0.0073 23.4 13.8 25 178-202 72-96 (121)
68 3a7p_A Autophagy protein 16; c 31.0 2.6E+02 0.009 24.2 13.7 58 431-488 70-127 (152)
69 3iv1_A Tumor susceptibility ge 29.2 1.9E+02 0.0065 22.0 8.8 54 576-629 19-72 (78)
70 3mq9_A Bone marrow stromal ant 28.4 5.2E+02 0.018 26.9 16.9 19 363-381 444-462 (471)
71 3i00_A HIP-I, huntingtin-inter 28.3 2.6E+02 0.0088 23.3 11.6 57 339-395 24-80 (120)
72 1m1j_B Fibrinogen beta chain; 26.7 5.7E+02 0.02 26.7 15.8 16 108-123 98-113 (464)
73 1deq_A Fibrinogen (alpha chain 25.5 5.3E+02 0.018 26.0 16.9 50 465-515 135-191 (390)
74 2b9c_A Striated-muscle alpha t 24.6 3.4E+02 0.012 23.4 16.6 70 584-653 54-123 (147)
75 2lw1_A ABC transporter ATP-bin 24.0 2.5E+02 0.0087 21.7 9.3 54 97-150 23-82 (89)
76 3qh9_A Liprin-beta-2; coiled-c 23.7 2.4E+02 0.0084 21.4 10.5 49 433-481 23-71 (81)
77 2yy0_A C-MYC-binding protein; 23.7 1.5E+02 0.0053 20.6 5.0 11 110-120 26-36 (53)
78 3cve_A Homer protein homolog 1 22.9 2.4E+02 0.0083 21.1 11.0 21 327-347 11-31 (72)
79 2pnv_A Small conductance calci 22.3 1.4E+02 0.0048 19.8 4.3 25 360-384 14-38 (43)
80 4gwp_A Mediator of RNA polymer 22.1 89 0.003 25.6 3.9 49 4-52 12-64 (115)
81 1go4_E MAD1 (mitotic arrest de 21.1 3.2E+02 0.011 21.9 9.3 33 362-394 12-44 (100)
82 3iv1_A Tumor susceptibility ge 21.1 2.8E+02 0.0095 21.1 10.6 13 338-350 19-31 (78)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.04 E-value=2.6e-05 Score=78.65 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE 160 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e 160 (718)
+..++..+...+..+......+...+......+..+...+..+...+..+...
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444334333333333333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.04 E-value=2.7e-05 Score=78.47 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 043740 95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALV 165 (718)
Q Consensus 95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~ 165 (718)
...+..+..++..+...+..+...+..+......+...+......+..+...+..+...+..+...+..+.
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666666666666666666666666666655554433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.49 E-value=2.7e-07 Score=111.90 Aligned_cols=61 Identities=26% Similarity=0.240 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE 160 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e 160 (718)
.+...+..++..+.++...+..+..++..+...+......+......+..+...+..+...
T Consensus 868 el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~ 928 (1184)
T 1i84_S 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555544444444443333333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.49 E-value=2.9e-07 Score=111.58 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 369 AKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 369 ~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
..+..+...+..+...+..+..++.
T Consensus 1109 ~~~~~le~~l~~Le~eie~L~eeLe 1133 (1184)
T 1i84_S 1109 SQKNNALKKIRELESHISDLQEDLE 1133 (1184)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.25 E-value=0.11 Score=47.39 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=45.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 139 KIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF 207 (718)
Q Consensus 139 ~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l 207 (718)
.+.-+......+...+..++.++..+...-.++..++...+..++.....+...+..+..+.......+
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666777777777666666666777777777777777777777777766655444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.07 E-value=0.26 Score=48.36 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
.+.++...+..+...+..+...+...+..+..
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444445555555555555555554443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.85 E-value=0.27 Score=44.89 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEES 466 (718)
Q Consensus 402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~ 466 (718)
.++.+...+..|......+...+..++..+.++..........+.++...+...-....-|..++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666655666666666555554444444444443
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.13 E-value=0.51 Score=40.76 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 043740 93 NFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHE 169 (718)
Q Consensus 93 ~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e 169 (718)
.....+..+...+.+......++......+..++..|..+++.....+.........|......|...+..+....+
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666667777777788888888888888888877777777777777777666666666665544433
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.89 E-value=12 Score=49.43 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740 111 EVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK 166 (718)
Q Consensus 111 ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~ 166 (718)
-|.....-+.....+.......+..=+.+|.+....+..|+..+...+..+..-..
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ 1955 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE 1955 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555666666666666666666666666554433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.85 E-value=24 Score=46.67 Aligned_cols=22 Identities=0% Similarity=-0.115 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHH
Q 043740 462 LTEESKQAKRQILGSKTSLQIA 483 (718)
Q Consensus 462 l~~e~~~~~~~~~~~~~~~~~l 483 (718)
....+......+..+..+....
T Consensus 2068 ~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2068 VKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccH
Confidence 3333333333333333333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.61 E-value=5.3 Score=35.52 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740 364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK 396 (718)
Q Consensus 364 i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~ 396 (718)
+.++...+..+......+..++..|+..+...+
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555554443
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.49 E-value=5.5 Score=35.41 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 043740 106 QGVALEVSELRNKLMSTSEEKAAL 129 (718)
Q Consensus 106 ~~~~~ei~~l~~~l~~~~~e~~~l 129 (718)
..++.++.++...|..-.+-...+
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rl 32 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRL 32 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 335555555555555444443333
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.29 E-value=4.5 Score=48.11 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
+..+.+++..+...+..+..+...+++.+.....++...+..+......|++.+++++..+...+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333344445555555555555555555544444433
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.84 E-value=2.6 Score=36.27 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
....|..+...+..|..++..+.+.+..|+..+...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555666666666666666666666666655554
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.16 E-value=5 Score=47.67 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 043740 334 RLLAKISQTE 343 (718)
Q Consensus 334 ~l~~~i~ele 343 (718)
.|+..+..++
T Consensus 988 ~L~~e~~~l~ 997 (1080)
T 2dfs_A 988 SLQEEIAKLR 997 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.10 E-value=5.7 Score=32.75 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 333 DRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390 (718)
Q Consensus 333 ~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~ 390 (718)
..|+.+...+..++..++.++.....+....+..|+..+..+......+...+..|+-
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555556666666666666655555555555544
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.05 E-value=3 Score=36.00 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
....|..+...+..|..++..+.+.+..|+..+...
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334555566666666666666666666666655544
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.38 E-value=4.8 Score=33.98 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 317 EIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 317 ~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
.|..++..+..+..+...+...+..+...+..++.+++.... .-......+..+.+.+++..-.+..|+..++.+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~----~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML----QREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555544332 111233344444444444444444444444443
No 19
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=88.62 E-value=8.2 Score=31.81 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 357 ENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393 (718)
Q Consensus 357 ~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~ 393 (718)
..+...++..|...+...++.+.++..........+.
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666666676666666555443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.80 E-value=9.9 Score=42.09 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 043740 406 LEQRNIKLT 414 (718)
Q Consensus 406 l~~~~~~L~ 414 (718)
+......+.
T Consensus 507 l~~~~~~~~ 515 (597)
T 3oja_B 507 LNKVFTHLK 515 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.75 E-value=10 Score=30.92 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 043740 590 WVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL 657 (718)
Q Consensus 590 ~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~ 657 (718)
.+..+..+.+........+...+.........+...+..|..++..++.+++.+...|.+....+...
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444455555555555555555555555555444444333
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.15 E-value=8.5 Score=33.34 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAALNSEYQ 134 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~ 134 (718)
+..++..+...+..+..+...+..++-
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 23
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.57 E-value=9.5 Score=30.01 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 322 IEDARQSREENDRLLAKISQTENELSAFRRKIAVQEN---EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 322 ~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~---~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
+.++..+..+...+...+.-+...+..++.+|+.... .+.+.+..+++.++.+....-+|+..+..|..++
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555554332 2333333444444444444444444444444433
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.59 E-value=13 Score=30.18 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 043740 588 KNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL 657 (718)
Q Consensus 588 ~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~ 657 (718)
+..+..+..+.+........+...+.........+...+..+..++..++.+++.+...+......+...
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555555555555555555555555555555555555555544444443
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.67 E-value=14 Score=29.56 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740 313 KLEEEIDGKIEDARQSREENDRLLAKISQTE 343 (718)
Q Consensus 313 ~le~~l~~~~~~~~~l~~e~~~l~~~i~ele 343 (718)
.|-++++.....++.|+.+...|..++..+.
T Consensus 13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 13 ELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555556666665655555443
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.79 E-value=16 Score=28.90 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043740 95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISAL 164 (718)
Q Consensus 95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l 164 (718)
...+..+.+.+.+......++......+..++..|..+ +.+.......|......|+..+..+
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555556666666666666666544 4444444444444444444444443
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.79 E-value=13 Score=32.17 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 043740 579 KMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDK 640 (718)
Q Consensus 579 ~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~ 640 (718)
.+......+...+..+..+...+..++..+...+..+...+..+..++..|+.++.++++.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555555555555555555555555554444
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.67 E-value=20 Score=30.04 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 584 LASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQES 620 (718)
Q Consensus 584 ~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~ 620 (718)
+..++..+..+..++..+.-+++.+...+.+.+.++.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444444444444444444444444444443
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.48 E-value=18 Score=29.38 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTEN 344 (718)
Q Consensus 306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~ 344 (718)
-++.++.-...++...+..+..+..++..|...+..+..
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555554443
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.34 E-value=17 Score=28.98 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHhHH
Q 043740 593 ESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-LEKKVGEL 657 (718)
Q Consensus 593 ~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~~~~~~~~ 657 (718)
.+......+...+..+..++..+...+..-.......+.....++.+++.+...|.+ .+.-+..+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555566666666666666666677777788888888888888887 66666665
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.16 E-value=17 Score=28.13 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 043740 605 VKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE 649 (718)
Q Consensus 605 ~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e 649 (718)
...+...+.........+...+..+..++..++.+++.+...+..
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444444433
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.98 E-value=19 Score=28.49 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 581 SDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNF 629 (718)
Q Consensus 581 ~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~l 629 (718)
..++..++..+......+..+......+..+...+..++..+......|
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L 68 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333344444433333334444444444444444433333333333333
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.87 E-value=27 Score=27.91 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 043740 109 ALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVH 168 (718)
Q Consensus 109 ~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~ 168 (718)
..++..+...+.....+...|...+ ..-.......+.....+..++..|+...
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l-------~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDI-------AKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444333 3333344444455555556655555433
No 34
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.23 E-value=26 Score=27.46 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 043740 441 LEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELA 491 (718)
Q Consensus 441 l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~ 491 (718)
+...+++++...+........+...+..++..++.+......++.+++.+.
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333444445555555555555555555555555443
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.63 E-value=14 Score=31.61 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 370 KVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIM-KNQEDKIADQQKIIKNLEDKIADQ 448 (718)
Q Consensus 370 ~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~l-e~~~~~~~~l~~e~~~l~~~i~~l 448 (718)
.+..+...+......+..|...+..... .....+....++..+...+...+ +.+..=++.-......+......+
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~----~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L 108 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENE----LRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRL 108 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTS----HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555554444332 33344445555555555554322 222222333333444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 449 QKIMKNQEDTVEKLTEESKQA 469 (718)
Q Consensus 449 ~~~l~~~~~~~~~l~~e~~~~ 469 (718)
...+......+..++.++..+
T Consensus 109 ~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 109 TEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444333
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.99 E-value=26 Score=26.92 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043740 608 LVQKLDRMEEQESFLREEISNF 629 (718)
Q Consensus 608 l~~el~~~~~~~~~l~~~~~~l 629 (718)
+..+...+.........++..+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443444433333
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.85 E-value=47 Score=34.95 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 043740 181 ELEGQVSRLKLELGSL 196 (718)
Q Consensus 181 ~l~~~i~~l~~~l~~l 196 (718)
++...|.+|+.+++.+
T Consensus 61 DltkrINELKnqLEdl 76 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.54 E-value=29 Score=29.62 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 043740 106 QGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQ 158 (718)
Q Consensus 106 ~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~ 158 (718)
+.+..++..+...+.....+...|...+......-...+.....+...++.|.
T Consensus 28 e~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 28 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666655555444433344444444444444433
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.41 E-value=9.7 Score=29.24 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=4.1
Q ss_pred HHHhhccHHH
Q 043740 683 AELLSLGEEK 692 (718)
Q Consensus 683 ~~i~~lg~vn 692 (718)
..|+.||.-|
T Consensus 69 qgLakL~~~~ 78 (79)
T 3cvf_A 69 EGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHhcccC
Confidence 3344444433
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.18 E-value=28 Score=26.80 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043740 100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA 163 (718)
Q Consensus 100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~ 163 (718)
.+...|..+-..|.-|+..++.+..++..|..+.+.+......+..++..|+.....-+..+..
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444444433
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=73.72 E-value=47 Score=29.21 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043740 377 KLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 377 ~l~~l~~~~~~le~el~~ 394 (718)
.+..+......|..++..
T Consensus 134 el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 134 KVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHH
Confidence 333344444444444433
No 42
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.07 E-value=42 Score=27.56 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcchHHHH
Q 043740 368 KAKVDNLQQKLDDMQTKKGQLDSQIARE---KGECPESRTEL 406 (718)
Q Consensus 368 ~~~~~~l~~~l~~l~~~~~~le~el~~~---~~~~~~~~~~l 406 (718)
...+..+...+..+.+.+..+...+..+ .+.||-|...+
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l 57 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcC
Confidence 3333333444444444445555444444 34688555444
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=71.02 E-value=42 Score=27.57 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 403 RTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDT 458 (718)
Q Consensus 403 ~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~ 458 (718)
+..|...+..|......+...+..++..+.++..........+.++...+...-..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444455555555555555555655555555555555555555555554443333
No 44
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.39 E-value=55 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740 367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREK 396 (718)
Q Consensus 367 l~~~~~~l~~~l~~l~~~~~~le~el~~~~ 396 (718)
+......|...+.+...-+..++.++..++
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444554455555555554443
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.16 E-value=45 Score=26.35 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 301 VKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSA 348 (718)
Q Consensus 301 ~~~le~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~ 348 (718)
+....-+..++.-...++...+..+..+..+...|...+..+..++..
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334555555556666666666666666666666666655554433
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=66.28 E-value=49 Score=26.48 Aligned_cols=71 Identities=11% Similarity=0.247 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 043740 573 LANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNI 643 (718)
Q Consensus 573 ~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~ 643 (718)
+...+..+..+-..+-..+..+..+...+..++..+..+...+...-...-..++.+......+..+..++
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555554444333344444444443333333333
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.11 E-value=1e+02 Score=32.56 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 043740 108 VALEVSELRNKLMSTSEEKAA 128 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~~e~~~ 128 (718)
+..-|.+|+.+++.+..-...
T Consensus 62 ltkrINELKnqLEdlsKnsKd 82 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKD 82 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchh
Confidence 555566666666555433333
No 48
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=64.44 E-value=59 Score=26.75 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 043740 102 SIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKE 181 (718)
Q Consensus 102 ~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~ 181 (718)
.++..+++.+...++..|.....+...|...... .-.+-...+..|...+..-+..|..+.............++..
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~---k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~ 81 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ---SSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666433221 2222233344444444444444444333333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043740 182 LEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 182 l~~~i~~l~~~l~~l~~e 199 (718)
+......+..++..|..+
T Consensus 82 Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 82 LMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444444444444444433
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.41 E-value=84 Score=27.50 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 435 QKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKR 471 (718)
Q Consensus 435 ~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~ 471 (718)
......+......+...+......+..++.++..++.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444445555554444443
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.63 E-value=44 Score=27.99 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDM 381 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l 381 (718)
.+..+..++..|..++..-
T Consensus 41 ~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 51
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.96 E-value=75 Score=25.55 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILG 475 (718)
Q Consensus 408 ~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~ 475 (718)
=.+.+|-++-+.+..++.-+.+....+......+.....+..+.+.........+...+..++..+.+
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666777777777666666666666666666666666666555666665555555554443
No 52
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.43 E-value=2.1e+02 Score=30.08 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 155 DERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRD 202 (718)
Q Consensus 155 ~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~ 202 (718)
..+....-.|....+...+....++.+++.+|..+..+++.++.++..
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 421 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333345555555555555555555554443
No 53
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=51.37 E-value=1.2e+02 Score=26.30 Aligned_cols=9 Identities=22% Similarity=-0.141 Sum_probs=3.2
Q ss_pred hhhhhhhHH
Q 043740 633 LGKQGGDKL 641 (718)
Q Consensus 633 ~~~le~e~~ 641 (718)
+.-+++.+.
T Consensus 82 l~~~E~dLe 90 (147)
T 2b9c_A 82 LVIIESDLE 90 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 54
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=49.76 E-value=1.4e+02 Score=26.56 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 246 VSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVK 302 (718)
Q Consensus 246 ~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~ 302 (718)
+.+-..+..+..+|.....++..+-........++.-....++.+.+-+.-+...+.
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~ 69 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555555555555665554
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.45 E-value=1.1e+02 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
+..++..+...+..+...+..+......+.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444443
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.58 E-value=1.1e+02 Score=24.50 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 409 RNIKLTNKIANQQKIMKNQED 429 (718)
Q Consensus 409 ~~~~L~~e~~~~~~~le~~~~ 429 (718)
.+..|..+-..+..++..++.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEk 32 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334344444444444333
No 57
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.05 E-value=1.4e+02 Score=26.97 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740 235 VVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281 (718)
Q Consensus 235 ~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~ 281 (718)
++++.....-+..|..+...|..++.....++..+..++..++....
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444455555566666666666555555555555555555443
No 58
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.09 E-value=1.3e+02 Score=24.19 Aligned_cols=29 Identities=3% Similarity=0.147 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQKRDL 203 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l 203 (718)
+..++..+...+..+...+..+......+
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 59
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.83 E-value=1.4e+02 Score=24.08 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 043740 596 NSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKL 641 (718)
Q Consensus 596 ~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~ 641 (718)
.++..+.=+++-|...+.++.+.+..+.....+.-..+..+....+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555554444444444333333333333
No 60
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.01 E-value=1.6e+02 Score=24.56 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 238 ANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEE 317 (718)
Q Consensus 238 l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~~le~~~~~~~~le~~ 317 (718)
+..++..+.++.+++.+....+.-.-.-+..-......++..-.-..+++..|.++...+...+........+-..-...
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQ 92 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQ 92 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 318 IDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKA 369 (718)
Q Consensus 318 l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~ 369 (718)
-+--...+..+...+..-..-+..+..+|--|+..++...-....-......
T Consensus 93 QSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~ 144 (167)
T 4gkw_A 93 QSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEK 144 (167)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.09 E-value=1.5e+02 Score=23.46 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 127 AALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204 (718)
Q Consensus 127 ~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~ 204 (718)
..|+.+|......++.++.....|...+..+.+.-. ......+...|..+..++..+..+...+..++..+.
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777666666655544211 011122445555555555555555555555554443
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.26 E-value=3.4e+02 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhH
Q 043740 108 VALEVSELRNKLMST 122 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~ 122 (718)
+...|..|+..|..+
T Consensus 65 ~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 65 FTSRINKLRDSLFNY 79 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 63
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.05 E-value=1.4e+02 Score=22.41 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 043740 437 IIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKT 478 (718)
Q Consensus 437 e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~ 478 (718)
-...+.-..+++-..++++..+...+..++..+......+..
T Consensus 24 TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566566666666666655555444433
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.87 E-value=1.6e+02 Score=22.67 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 043740 341 QTENELSAFR 350 (718)
Q Consensus 341 ele~~l~~l~ 350 (718)
.++..+....
T Consensus 12 sLE~~l~e~e 21 (84)
T 1gk4_A 12 SLERQMREME 21 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 65
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.78 E-value=1.2e+02 Score=23.16 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043740 574 ANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ 618 (718)
Q Consensus 574 e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~ 618 (718)
+.++.++...++-....++.++.........+..+..++..+..+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444444444444433
No 66
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.59 E-value=1.8e+02 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 043740 138 SKIQAAENMNKSLRDEADERQ 158 (718)
Q Consensus 138 ~~l~e~~~~~~~L~~~~~~l~ 158 (718)
..+......|..|+..+....
T Consensus 16 eaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 16 EALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 67
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.64 E-value=2.1e+02 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 178 RIKELEGQVSRLKLELGSLNDQKRD 202 (718)
Q Consensus 178 ~i~~l~~~i~~l~~~l~~l~~e~~~ 202 (718)
++.+++.+|..|...+.....+...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444433
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.98 E-value=2.6e+02 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 043740 431 IADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMT 488 (718)
Q Consensus 431 ~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~ 488 (718)
+..+..++..+...+.++...+....+.+..+..++..+...+..++.....++.+-.
T Consensus 70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666555555555555555555555554444444444443333
No 69
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.24 E-value=1.9e+02 Score=22.02 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNF 629 (718)
Q Consensus 576 ~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~l 629 (718)
.+...+.++..++..-.++......+...+..+..+-..+...+..+.....++
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555544444444443
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.36 E-value=5.2e+02 Score=26.86 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043740 363 QILALKAKVDNLQQKLDDM 381 (718)
Q Consensus 363 ~i~~l~~~~~~l~~~l~~l 381 (718)
+|..+..++..+..++.++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.34 E-value=2.6e+02 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 339 ISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395 (718)
Q Consensus 339 i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~ 395 (718)
+..+..++..+..+...-+..+..+|..|...+..-.........+...|..++..+
T Consensus 24 ie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 24 ISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333445555555666655555555444444455555554443
No 72
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.66 E-value=5.7e+02 Score=26.74 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhHH
Q 043740 108 VALEVSELRNKLMSTS 123 (718)
Q Consensus 108 ~~~ei~~l~~~l~~~~ 123 (718)
....|.+|+..+..+.
T Consensus 98 V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHh
Confidence 3444555555554443
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.53 E-value=5.3e+02 Score=25.99 Aligned_cols=50 Identities=6% Similarity=0.062 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHH
Q 043740 465 ESKQAKRQILGSKTSLQIAERKMTELAEDFR-----K--RLEDNIRVLFRRIQVAEQL 515 (718)
Q Consensus 465 e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~-----k--~le~~i~~l~~~~~~~~~~ 515 (718)
.+..++..+.....+|..|+..| ++.-.-| . .+++.+..|+..+..+.+.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I-d~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI-DIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 34444444444445555555555 2211111 1 2333556666655555544
No 74
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.58 E-value=3.4e+02 Score=23.43 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 043740 584 LASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKK 653 (718)
Q Consensus 584 ~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~ 653 (718)
+..+...+....................+..+...+.....+....+.++..++.++..+.+.|..+...
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3333333333333333333334444444444444444555555555555555555555555555544443
No 75
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.98 E-value=2.5e+02 Score=21.74 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 043740 97 AHQEISIEQQGVALEVSELRNKLMST------SEEKAALNSEYQEALSKIQAAENMNKSL 150 (718)
Q Consensus 97 ~~~~~~~ei~~~~~ei~~l~~~l~~~------~~e~~~l~~~~~~~~~~l~e~~~~~~~L 150 (718)
++..+-..|..++.++..|...|..- -.....+..++..+...|..+..++..|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666431 1334444555555555555555555444
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.73 E-value=2.4e+02 Score=21.45 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 043740 433 DQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQ 481 (718)
Q Consensus 433 ~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~ 481 (718)
++..++..|.-.+.++..+.-..+..+..-..++..++..+..-...+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 3444444454444444444333333333333444444444433333333
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.73 E-value=1.5e+02 Score=20.61 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=4.0
Q ss_pred HHHHHHHHHhh
Q 043740 110 LEVSELRNKLM 120 (718)
Q Consensus 110 ~ei~~l~~~l~ 120 (718)
.+..+|+.++.
T Consensus 26 ~E~~eLk~k~~ 36 (53)
T 2yy0_A 26 LELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 78
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.90 E-value=2.4e+02 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043740 327 QSREENDRLLAKISQTENELS 347 (718)
Q Consensus 327 ~l~~e~~~l~~~i~ele~~l~ 347 (718)
.+......|+.++..++..+.
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 79
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.32 E-value=1.4e+02 Score=19.84 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 360 ASAQILALKAKVDNLQQKLDDMQTK 384 (718)
Q Consensus 360 ~~~~i~~l~~~~~~l~~~l~~l~~~ 384 (718)
++.+-..+..++..+...++.+...
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 80
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=22.14 E-value=89 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHhhhcCCcccc----hhhhhhhHHHHHHHHHHHHHHHHHH
Q 043740 4 SKAEIEDQVKKILKLVRSKDNGIT----KESKRESELVGLINNFHDRYQSLYA 52 (718)
Q Consensus 4 ~~~~~~~~vk~~~~~i~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~ 52 (718)
.+.++|.+|=.|+.-.-.--++|. ...+-+|.+..++.+||..+...+-
T Consensus 12 SL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~ 64 (115)
T 4gwp_A 12 SLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTT 64 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHH
Confidence 567899999999976664444442 3345689999999999998766555
No 81
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.14 E-value=3.2e+02 Score=21.86 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 362 AQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394 (718)
Q Consensus 362 ~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~ 394 (718)
..+..+...++.|..+...|...+..|+.++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888888876
No 82
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.08 E-value=2.8e+02 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 043740 338 KISQTENELSAFR 350 (718)
Q Consensus 338 ~i~ele~~l~~l~ 350 (718)
.+.....++.+|+
T Consensus 19 ~~~q~qaEl~sLr 31 (78)
T 3iv1_A 19 EMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 3344444444444
Done!