Query 043740
Match_columns 718
No_of_seqs 437 out of 1561
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 13:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 44.7 58 0.0043 24.5 13.1 34 359-392 69-102 (107)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 44.2 60 0.0043 24.4 12.6 25 175-199 70-94 (107)
3 d1owaa_ a.7.1.1 (A:) Spectrin 30.1 1E+02 0.0073 24.4 8.8 25 689-716 122-146 (156)
4 d1seta1 a.2.7.1 (A:1-110) Sery 25.0 1.3E+02 0.0093 22.4 9.4 69 177-248 28-97 (110)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 18.6 1.2E+02 0.0085 20.3 5.6 25 625-649 5-29 (66)
6 d1s35a2 a.7.1.1 (A:1169-1273) 16.6 1.3E+02 0.0094 21.8 6.1 24 689-715 70-93 (105)
7 d2spca_ a.7.1.1 (A:) Spectrin 15.7 1.9E+02 0.014 20.7 9.8 93 625-717 4-98 (107)
8 d1u5pa2 a.7.1.1 (A:1772-1872) 13.1 90 0.0066 22.4 4.2 91 627-717 1-93 (101)
9 d1seta1 a.2.7.1 (A:1-110) Sery 12.8 2.5E+02 0.018 20.6 10.5 68 230-297 29-97 (110)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 10.8 3.2E+02 0.023 20.7 14.4 96 126-221 3-132 (133)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.72 E-value=58 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI 392 (718)
Q Consensus 359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el 392 (718)
.+..+++.+...+..+...+..+...+..+...+
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444444443
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.18 E-value=60 Score=24.44 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ASARIKELEGQVSRLKLELGSLNDQ 199 (718)
Q Consensus 175 ~~~~i~~l~~~i~~l~~~l~~l~~e 199 (718)
+..++..+...+..+...+..+..+
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~ 94 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 3
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.13 E-value=1e+02 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHHHHhhhccchHHHHh
Q 043740 689 GEEKREAIRQLCVFIDHQRTDCDYLKAE 716 (718)
Q Consensus 689 g~vn~~aIeey~~~~~~~~er~~fL~~~ 716 (718)
+|.....| ...++.+..|++-|...
T Consensus 122 ~~~~~~~i---~~~l~~l~~~W~~L~~~ 146 (156)
T d1owaa_ 122 GHSAHEET---KAHIEELRHLWDLLLEL 146 (156)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH---HHHHHHHHHHHHHHHHH
Confidence 55555544 44567888888877654
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.01 E-value=1.3e+02 Score=22.45 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 177 ARIKELEGQVSRLKLELGSLNDQKRDLEAQF-ATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSL 248 (718)
Q Consensus 177 ~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l-~~~~~~l~e~~~~l~~~~~~~~~~~~l~~~l~~~~~el~~l 248 (718)
..+-.+......+..+++.++.+++.+..+| ............... .+..++..+...+..+..++..+
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k---~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGK---ALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=18.59 E-value=1.2e+02 Score=20.32 Aligned_cols=25 Identities=8% Similarity=-0.109 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHH
Q 043740 625 EISNFEAKLGKQGGDKLNIIKTMSE 649 (718)
Q Consensus 625 ~~~~le~~~~~le~e~~~~~~~l~e 649 (718)
.+.+|...+..+...+..+...|..
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3344444455555555555555543
No 6
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.63 E-value=1.3e+02 Score=21.77 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHhhhccchHHHH
Q 043740 689 GEEKREAIRQLCVFIDHQRTDCDYLKA 715 (718)
Q Consensus 689 g~vn~~aIeey~~~~~~~~er~~fL~~ 715 (718)
||.....|.+ .+..+.+||+.|..
T Consensus 70 ~~~~~~~I~~---~~~~l~~rw~~l~~ 93 (105)
T d1s35a2 70 GNLYSDKIKE---KVQLIEDRHRKNNE 93 (105)
T ss_dssp TCTTHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCCcchHHHH---HHHHHHHHHHHHHH
Confidence 6666655554 34666677776654
No 7
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=15.74 E-value=1.9e+02 Score=20.69 Aligned_cols=93 Identities=12% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHH
Q 043740 625 EISNFEAKLGKQGGDKLNIIKTMSE--LEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVF 702 (718)
Q Consensus 625 ~~~~le~~~~~le~e~~~~~~~l~e--~~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~ 702 (718)
.++.+......+..-+......+.. ++..+..++..+.++..-...+......+..+...-..|..-++.+.......
T Consensus 4 ~lq~F~~~~~~~~~Wl~e~e~~l~~~~~g~d~~~~~~l~~~h~~~~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~I~~~ 83 (107)
T d2spca_ 4 DLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEK 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q ss_pred HHhhhccchHHHHhh
Q 043740 703 IDHQRTDCDYLKAEI 717 (718)
Q Consensus 703 ~~~~~er~~fL~~~~ 717 (718)
+..+..|++.|...+
T Consensus 84 ~~~l~~~w~~L~~~~ 98 (107)
T d2spca_ 84 RKQVLERWRHLKEGL 98 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 8
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.13 E-value=90 Score=22.45 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Q 043740 627 SNFEAKLGKQGGDKLNIIKTMSE--LEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFID 704 (718)
Q Consensus 627 ~~le~~~~~le~e~~~~~~~l~e--~~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~ 704 (718)
|.+-..+..+.+-+......+.. ++..+..++..+.+...-..++......+..+......|...++.+-......++
T Consensus 1 h~F~~~~~el~~Wl~e~~~~l~s~~~g~d~~~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~ 80 (101)
T d1u5pa2 1 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLA 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q ss_pred hhhccchHHHHhh
Q 043740 705 HQRTDCDYLKAEI 717 (718)
Q Consensus 705 ~~~er~~fL~~~~ 717 (718)
.+..|+..|...+
T Consensus 81 ~l~~~w~~L~~~~ 93 (101)
T d1u5pa2 81 QFVDHWKELKQLA 93 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.85 E-value=2.5e+02 Score=20.63 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 230 QVRGLVVQANVMQQDLVSLTSQKNELQLLL-KGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDF 297 (718)
Q Consensus 230 ~~~~l~~~l~~~~~el~~l~~e~~~l~~~l-~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l 297 (718)
.+..+..+...+..+++.+..+...+..++ .........+..+...+..++......+..+..++..+
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.84 E-value=3.2e+02 Score=20.66 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhh-------------------------------
Q 043740 126 KAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNR------------------------------- 174 (718)
Q Consensus 126 ~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~------------------------------- 174 (718)
+..|..+++.....+..+...+..+...+.++..-+..+..........
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v 82 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeee
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740 175 ---ASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIEL 221 (718)
Q Consensus 175 ---~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l 221 (718)
...-+.-+...+..++..+..+...+..+...+......+.+....+
T Consensus 83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!