BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043741
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza
           sativa subsp. japonica GN=FTSH8 PE=3 SV=1
          Length = 822

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 20  QMIMEKEIYSNDDLKELLNCF-LQLNSPSNHDVIVQAFT---GVWNEAVSKSPKKPCDD 74
           +M++EKE+   DDL  +L     + + P+N+D+  Q F       N+  +K+P +P DD
Sbjct: 754 EMLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQGFQDEEDSKNQEAAKTP-QPDDD 811


>sp|P58766|PLDZ1_ARATH Phospholipase D zeta OS=Arabidopsis thaliana GN=PLDZETA PE=3 SV=1
          Length = 820

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   IAVVKDSNDPYEDFRRSMLQMIMEKEIYSNDDLKEL-LNCFLQLNSPSNHDVIVQAF 56
           + +V D    +E F+R  L M  ++E Y  D  K   + C L   +P N D IVQ F
Sbjct: 276 LMLVWDDRTSHEVFKRDGLMMTHDQETY--DYFKNTKVRCVLCPRNPDNGDSIVQGF 330


>sp|A9KRZ3|EFG_CLOPH Elongation factor G OS=Clostridium phytofermentans (strain ATCC
           700394 / DSM 18823 / ISDg) GN=fusA PE=3 SV=1
          Length = 705

 Score = 30.0 bits (66), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 6   DSNDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDV 51
           D  D  E++R +M++ I E    ++DDL E    FL+ N PSN ++
Sbjct: 215 DMKDQAEEYRAAMIESICE----TDDDLIE---AFLEGNEPSNEEL 253


>sp|Q6XDK8|POLG_SVM10 Genome polyprotein OS=Sapporo virus (isolate
           GII/Human/Thailand/Mc10/2000) GN=ORF1 PE=1 SV=1
          Length = 2278

 Score = 29.6 bits (65), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 17  SMLQMIMEKEIYSNDDLKELLNCFLQL 43
           ++L++   +++   D+LK LL+CF QL
Sbjct: 401 ALLELAASRDVTGTDELKRLLDCFTQL 427


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,736,274
Number of Sequences: 539616
Number of extensions: 965028
Number of successful extensions: 1844
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 8
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)