Query 043741
Match_columns 79
No_of_seqs 102 out of 221
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rg8_A Programmed cell death p 89.7 0.34 1.2E-05 32.9 3.7 47 10-58 5-51 (165)
2 2nsz_A Programmed cell death p 87.9 0.36 1.2E-05 31.4 2.7 45 10-56 2-46 (129)
3 2ion_A PDCD4, programmed cell 87.2 0.43 1.5E-05 32.1 2.8 47 9-57 3-49 (152)
4 3eiq_C Programmed cell death p 68.7 5.5 0.00019 30.2 4.1 46 12-59 51-96 (358)
5 1ug3_A EIF4GI, eukaryotic prot 67.5 5.3 0.00018 29.2 3.7 44 10-56 6-50 (339)
6 2zu6_B Programmed cell death p 66.2 5.9 0.0002 29.3 3.7 47 10-58 161-207 (307)
7 2zu6_B Programmed cell death p 66.1 3.4 0.00012 30.5 2.4 44 13-58 1-44 (307)
8 2zzd_C Thiocyanate hydrolase s 60.9 7.7 0.00026 28.8 3.4 48 11-58 24-74 (243)
9 1ugp_A NitrIle hydratase alpha 60.6 11 0.00039 27.2 4.3 51 9-59 14-65 (203)
10 3a8g_A NitrIle hydratase subun 57.9 11 0.00039 27.3 3.8 51 8-58 16-67 (207)
11 3eiq_C Programmed cell death p 56.1 15 0.00051 27.8 4.4 47 9-57 211-257 (358)
12 2bzb_A Conserved domain protei 54.5 14 0.00048 21.7 3.2 34 13-46 12-51 (62)
13 2c0s_A Conserved domain protei 51.6 25 0.00086 20.7 4.1 32 13-44 12-49 (64)
14 3hht_B NitrIle hydratase beta 47.3 32 0.0011 24.8 4.9 32 11-42 73-104 (229)
15 2xwv_A Sialic acid-binding per 38.0 14 0.00049 26.3 1.7 40 11-50 272-311 (312)
16 1s7z_A Gene 0.3 protein; all h 37.9 48 0.0016 22.0 4.1 51 7-57 4-58 (117)
17 3mab_A Uncharacterized protein 36.4 43 0.0015 20.8 3.6 28 16-43 14-43 (93)
18 3a8g_B NitrIle hydratase subun 36.2 45 0.0015 23.8 4.1 30 10-39 72-101 (212)
19 3hht_A NitrIle hydratase alpha 35.4 43 0.0015 24.4 3.9 44 15-58 29-73 (216)
20 3bqs_A Uncharacterized protein 35.4 79 0.0027 19.5 5.4 43 16-59 14-58 (93)
21 2lja_A Putative thiol-disulfid 35.1 27 0.00092 20.7 2.4 23 28-50 129-151 (152)
22 3mjk_A Platelet-derived growth 34.5 26 0.00089 24.5 2.6 23 16-38 7-29 (169)
23 1ugp_B NitrIle hydratase beta 32.5 79 0.0027 22.7 4.9 33 10-42 68-100 (226)
24 4fm4_B NitrIle hydratase beta 31.9 50 0.0017 23.3 3.7 26 11-36 69-94 (206)
25 2kuc_A Putative disulphide-iso 29.6 44 0.0015 19.4 2.7 25 26-50 105-129 (130)
26 3qyh_A CO-type nitrIle hydrata 29.2 44 0.0015 24.5 3.1 49 11-59 36-85 (226)
27 1q2h_A APS, adaptor protein wi 29.0 46 0.0016 20.1 2.7 29 37-65 26-58 (69)
28 2jyl_A Capsid protein P24 (Ca) 27.1 78 0.0027 20.1 3.7 46 6-56 30-79 (105)
29 1sdi_A ORF-23, hypothetical pr 27.1 75 0.0026 22.8 4.0 35 17-51 20-54 (213)
30 2kkm_A Translation machinery-a 26.0 49 0.0017 21.9 2.7 43 7-49 19-66 (144)
31 1d1d_A Protein (capsid protein 24.2 96 0.0033 22.8 4.2 45 6-55 181-229 (262)
32 3l6a_A Eukaryotic translation 24.0 67 0.0023 23.9 3.4 42 12-55 9-52 (364)
33 4hd1_A Squalene synthase HPNC; 23.3 90 0.0031 22.2 3.8 33 8-42 103-135 (294)
34 3nkz_A Flagellar protein FLIT; 21.0 1.4E+02 0.0047 19.2 4.1 33 11-43 14-46 (123)
35 4fm4_A NitrIle hydratase alpha 20.7 70 0.0024 23.1 2.8 44 16-59 14-58 (209)
36 4gou_A EHRGS-rhogef; RGS domai 20.7 46 0.0016 26.1 1.9 17 31-47 23-39 (518)
37 3qyh_B CO-type nitrIle hydrata 20.6 1.1E+02 0.0037 21.9 3.7 28 11-38 69-96 (219)
No 1
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=89.75 E-value=0.34 Score=32.94 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG 58 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d 58 (79)
+-++|++.+...|.|- ..-.|++|.+.|.-.||+|.+|..+++-...
T Consensus 5 s~ee~~kk~~~ii~EY--f~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 51 (165)
T ss_dssp SHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 4678999999999874 2224789999999999999999988876654
No 2
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=87.88 E-value=0.36 Score=31.41 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043741 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAF 56 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF 56 (79)
|-++|++.|...|.|-- .-.|++|-..|.-.||.|.+|..+++-.
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~ 46 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEA 46 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 66789999999998742 2247899999999999998888666543
No 3
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.18 E-value=0.43 Score=32.11 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 043741 9 DPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFT 57 (79)
Q Consensus 9 DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~ 57 (79)
.|-.+|++.|..+|.|-- .-.|++|-..|.-.||.|.+|..+++-..
T Consensus 3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i 49 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAI 49 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 577899999999998741 12488999999999999998876665433
No 4
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.66 E-value=5.5 Score=30.23 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHHH
Q 043741 12 EDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTGV 59 (79)
Q Consensus 12 ~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~dl 59 (79)
++|++....+|.|- +.-.+++|...|.-.||.+.+|..+++-....
T Consensus 51 ee~~k~~~~ii~EY--f~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 68999888888874 23357899999999999999998888766543
No 5
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=67.52 E-value=5.3 Score=29.22 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043741 10 PYEDFRRSMLQMIMEK-EIYSNDDLKELLNCFLQLNSPSNHDVIVQAF 56 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~-~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF 56 (79)
+-++|++.|..+|.|- .. .|++|-..|.-.||.|.+|..+++-.
T Consensus 6 s~ee~~k~~~~ll~Ey~~~---~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHL---NDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 4567888888888763 22 36778999999999997777665443
No 6
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.19 E-value=5.9 Score=29.28 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG 58 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d 58 (79)
|-.+|++-|..++.|-- .-.|++|-..|.-.||.|.+|..+++-...
T Consensus 161 ~~eelkkki~~lL~EY~--~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~ 207 (307)
T 2zu6_B 161 SVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAII 207 (307)
T ss_dssp CHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 67899999999998742 124899999999999999998877665443
No 7
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.12 E-value=3.4 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741 13 DFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG 58 (79)
Q Consensus 13 DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d 58 (79)
+|++-...+|.|- +.-.|++|.+.|.-.||+|.+|..+++-...
T Consensus 1 e~~k~~~~ii~EY--f~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHH--HHHCCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 4777777777763 1224899999999999999999998886544
No 8
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=60.88 E-value=7.7 Score=28.81 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=37.4
Q ss_pred HHHHHH---HHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHHH
Q 043741 11 YEDFRR---SMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFTG 58 (79)
Q Consensus 11 y~DFR~---SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~d 58 (79)
..+|-. -+++...+||+.+.++++.++..|-+..+..==+++.+|++|
T Consensus 24 ~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 334544 888999999999999999999999999444445566677665
No 9
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=60.65 E-value=11 Score=27.22 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCCCchHhHHHHHHHH
Q 043741 9 DPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQL-NSPSNHDVIVQAFTGV 59 (79)
Q Consensus 9 DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~L-N~~~~H~~I~~aF~dl 59 (79)
.+..++-+-++++..++|+.+.++++.+...|-+- .+..=-++|.+|..|=
T Consensus 14 ~~~~~r~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp 65 (203)
T 1ugp_A 14 KEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCH
Confidence 45678888999999999999999999999999998 4444456677777653
No 10
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=57.93 E-value=11 Score=27.28 Aligned_cols=51 Identities=12% Similarity=0.233 Sum_probs=41.4
Q ss_pred cChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCCCchHhHHHHHHH
Q 043741 8 NDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQL-NSPSNHDVIVQAFTG 58 (79)
Q Consensus 8 ~DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~L-N~~~~H~~I~~aF~d 58 (79)
.++..++-+-+++...++|+.+.++++.++..|-+- .+..==++|-+|..|
T Consensus 16 ~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 16 QAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 456788899999999999999999999999999998 444445566677665
No 11
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.05 E-value=15 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 043741 9 DPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFT 57 (79)
Q Consensus 9 DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~ 57 (79)
.|-+++++.|...|.|-- ...|++|-..|.-.||.|.+|..+++-..
T Consensus 211 ~~veelkkki~~lL~EY~--~s~D~~EA~~ci~EL~~p~fhhe~V~~av 257 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAI 257 (358)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHccCCcchHHHHHHHH
Confidence 578899998888888742 23588999999999999988876665433
No 12
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=54.48 E-value=14 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.502 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCC
Q 043741 13 DFRRSMLQMIMEKEIYSN------DDLKELLNCFLQLNSP 46 (79)
Q Consensus 13 DFR~SM~EMI~e~~i~~~------~dLeeLL~cYL~LN~~ 46 (79)
.=|+-|.+.+...|+.++ -+|-.||..|..+..+
T Consensus 12 ~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 12 NKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457888898888898876 6788999999998754
No 13
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=51.57 E-value=25 Score=20.67 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcC
Q 043741 13 DFRRSMLQMIMEKEIYSN------DDLKELLNCFLQLN 44 (79)
Q Consensus 13 DFR~SM~EMI~e~~i~~~------~dLeeLL~cYL~LN 44 (79)
.=|+-|.+.+...|+.++ -+|-.||..|..+.
T Consensus 12 ~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~ 49 (64)
T 2c0s_A 12 AKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELK 49 (64)
T ss_dssp HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999887 67889999998764
No 14
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=47.35 E-value=32 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQ 42 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~ 42 (79)
|+-....++.+++++|+.+.++|.+...-||.
T Consensus 73 Ye~WL~ale~lLvekGvit~~EL~~r~~~~~~ 104 (229)
T 3hht_B 73 YGHWIATVAYNLVDTGVLDEKELDERTEVFSK 104 (229)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 77788999999999999999999999999985
No 15
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=38.02 E-value=14 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchH
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHD 50 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~ 50 (79)
...||+.+..+..+-.-.....-+++|.-|+..|+.+||.
T Consensus 272 ~~~~~~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhCcccccC
Confidence 4668877777665421111134678999999999988885
No 16
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=37.91 E-value=48 Score=21.98 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=39.5
Q ss_pred ccChHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCCCchHhHHHHHH
Q 043741 7 SNDPYEDFRRSMLQMIME----KEIYSNDDLKELLNCFLQLNSPSNHDVIVQAFT 57 (79)
Q Consensus 7 S~DPy~DFR~SM~EMI~e----~~i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF~ 57 (79)
|...|.+.-.+-.||..+ ..+++-+|+.+-+.---.-|-|.+-+-|..+|+
T Consensus 4 sn~ty~~l~a~a~e~l~e~Ir~d~i~~~DD~~D~iHe~ad~~VP~yy~diFsVmA 58 (117)
T 1s7z_A 4 SNMTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMA 58 (117)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTTCCCGGGCHHHHHHHHHHHSCCSHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhccCCcchhhhHHhhhh
Confidence 667788888888888766 478999999988888888888988877766664
No 17
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=36.42 E-value=43 Score=20.81 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHH--HHHHHhc
Q 043741 16 RSMLQMIMEKEIYSNDDLKEL--LNCFLQL 43 (79)
Q Consensus 16 ~SM~EMI~e~~i~~~~dLeeL--L~cYL~L 43 (79)
..|++|...-||.+.++|+++ ..+|+.|
T Consensus 14 ~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rL 43 (93)
T 3mab_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHH
Confidence 457889999999999999987 7788887
No 18
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=36.19 E-value=45 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 043741 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNC 39 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~c 39 (79)
=|+-....++.+++++|+.+.++|.++|.-
T Consensus 72 YYe~WL~ale~lLvekGvit~~EL~~~~g~ 101 (212)
T 3a8g_B 72 YYERYVIGVATLMVEKGILTQDELESLAGG 101 (212)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Confidence 367788899999999999999999886654
No 19
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=35.43 E-value=43 Score=24.36 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCCCchHhHHHHHHH
Q 043741 15 RRSMLQMIMEKEIYSNDDLKELLNCFLQL-NSPSNHDVIVQAFTG 58 (79)
Q Consensus 15 R~SM~EMI~e~~i~~~~dLeeLL~cYL~L-N~~~~H~~I~~aF~d 58 (79)
-+-+++...|+|+.+.+.+..++..|-+- .+..=-++|-+|..|
T Consensus 29 ~~Al~~ll~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D 73 (216)
T 3hht_A 29 AKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 73 (216)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 45678888999999999999999999755 454555677777765
No 20
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=35.41 E-value=79 Score=19.50 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHH--HHHHHhcCCCCchHhHHHHHHHH
Q 043741 16 RSMLQMIMEKEIYSNDDLKEL--LNCFLQLNSPSNHDVIVQAFTGV 59 (79)
Q Consensus 16 ~SM~EMI~e~~i~~~~dLeeL--L~cYL~LN~~~~H~~I~~aF~dl 59 (79)
..+++|...-||.+.++|+++ ..+|+.|-....-..+ ..|-.+
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL 58 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYAL 58 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHH
Confidence 468899999999999999987 7889999876554444 555544
No 21
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=35.14 E-value=27 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchH
Q 043741 28 YSNDDLKELLNCFLQLNSPSNHD 50 (79)
Q Consensus 28 ~~~~dLeeLL~cYL~LN~~~~H~ 50 (79)
.+.++|+++|.-++..|...+|.
T Consensus 129 ~~~~~l~~~l~~~~~~~~~~~~~ 151 (152)
T 2lja_A 129 PSDPKTAEKFNELLGLEGHHHHH 151 (152)
T ss_dssp TTCHHHHHHHHHHHTCCSSSSSC
T ss_pred CCHHHHHHHHHHHhccccccccC
Confidence 35689999999999999888874
No 22
>3mjk_A Platelet-derived growth factor subunit A; cystine-knot, hormone; 2.40A {Homo sapiens}
Probab=34.55 E-value=26 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Q 043741 16 RSMLQMIMEKEIYSNDDLKELLN 38 (79)
Q Consensus 16 ~SM~EMI~e~~i~~~~dLeeLL~ 38 (79)
++++||+....|.+.+||+-||.
T Consensus 7 ~~l~e~~~~s~i~si~dlq~ll~ 29 (169)
T 3mjk_A 7 REVIERLARSQIHSIRDLQRLLE 29 (169)
T ss_dssp HHHHHHHHTSCCCSHHHHHHHSC
T ss_pred HHHHHHhcCCCcccHHHHHHHhh
Confidence 57899999999999999999985
No 23
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=32.45 E-value=79 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 043741 10 PYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQ 42 (79)
Q Consensus 10 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~ 42 (79)
=|+-....++.+++++|+.+.++|...-.-|+.
T Consensus 68 YYe~Wl~ale~lLvekGvit~~EL~ar~~~~~~ 100 (226)
T 1ugp_B 68 YYWHWIRTYIHHGVRTGKIDLEELERRTQYYRE 100 (226)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 367788899999999999999999999999985
No 24
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=31.88 E-value=50 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHH
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKEL 36 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeL 36 (79)
|+-....++.+++++|+.+.++|++-
T Consensus 69 Ye~Wl~ale~lLvekG~it~~EL~a~ 94 (206)
T 4fm4_B 69 FERVFTTAVTLCIEKGVFTAAELEAK 94 (206)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHhhc
Confidence 66688999999999999999999874
No 25
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.62 E-value=44 Score=19.37 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCchH
Q 043741 26 EIYSNDDLKELLNCFLQLNSPSNHD 50 (79)
Q Consensus 26 ~i~~~~dLeeLL~cYL~LN~~~~H~ 50 (79)
|..+.++|++.|.-++.=|.+.+|.
T Consensus 105 G~~~~~~l~~~l~~~~~~~~~~~~~ 129 (130)
T 2kuc_A 105 GAEDAPELLKKVKLGVESEGHHHHH 129 (130)
T ss_dssp SCCCHHHHHHHHHHHHSCCC-----
T ss_pred CCCCHHHHHHHHHHHHHhccccccC
Confidence 4456789999999999888888774
No 26
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=29.21 E-value=44 Score=24.51 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCCCchHhHHHHHHHH
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQL-NSPSNHDVIVQAFTGV 59 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~L-N~~~~H~~I~~aF~dl 59 (79)
+..--+-+++...++|+.+.+.+..++..|-+- .+..==++|-+|.+|=
T Consensus 36 ~~~r~~Al~~lL~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp 85 (226)
T 3qyh_A 36 IALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDP 85 (226)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCH
Confidence 344456788889999999999999999999764 5555556777887763
No 27
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=29.04 E-value=46 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHhcCC----CCchHhHHHHHHHHHHHhhc
Q 043741 37 LNCFLQLNS----PSNHDVIVQAFTGVWNEAVS 65 (79)
Q Consensus 37 L~cYL~LN~----~~~H~~I~~aF~dl~~~l~~ 65 (79)
-.-|++.|+ +..|.-+.+=|+|.....|.
T Consensus 26 ~~~f~~~nP~~~~~~s~~~Fs~~F~~~F~~hF~ 58 (69)
T 1q2h_A 26 FCRFLRDNPAYDTPDAGASFSRHFAANFLDVFG 58 (69)
T ss_dssp HHHHHHHCGGGCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCcccHHHHHHHHHHHHHHHHH
Confidence 346888884 33477788889998887774
No 28
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=27.12 E-value=78 Score=20.08 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=29.2
Q ss_pred cccChHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCCCCchHhHHHHH
Q 043741 6 DSNDPYEDFRRSMLQMIMEKE----IYSNDDLKELLNCFLQLNSPSNHDVIVQAF 56 (79)
Q Consensus 6 ~S~DPy~DFR~SM~EMI~e~~----i~~~~dLeeLL~cYL~LN~~~~H~~I~~aF 56 (79)
-..+||+||-+...+-+.... +..| |-+-| +|-+.|+.. +.|+++.
T Consensus 30 GpKEPf~dyVdR~~k~l~ae~~~~~vK~~--mt~tL-~~qNANpdC--k~ilk~l 79 (105)
T 2jyl_A 30 GPKEPFRDYVDRFYKTLRAEQASQEVKNA--ATETL-LVQNANPDC--KTILKAL 79 (105)
T ss_dssp CSSSCHHHHHHHHHHHHHHHCCCTTTTTS--CHHHH-HHHTSCHHH--HHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhhcchhhHHH--hhhhh-hHhhcCcch--hhHHHcc
Confidence 356899999999888887654 4445 33433 256666543 4455655
No 29
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=27.05 E-value=75 Score=22.77 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCchHh
Q 043741 17 SMLQMIMEKEIYSNDDLKELLNCFLQLNSPSNHDV 51 (79)
Q Consensus 17 SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~H~~ 51 (79)
.+++.|+..|-.|.+.++-+|..-|..|++..-++
T Consensus 20 ~lVqqlA~~G~~d~~~~~~~l~Sll~~np~st~~V 54 (213)
T 1sdi_A 20 RLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAV 54 (213)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHCCSCSSHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46888999999999999999999999999876543
No 30
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=26.05 E-value=49 Score=21.94 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=35.0
Q ss_pred ccChHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCCCCch
Q 043741 7 SNDPYEDFRRSMLQMIMEKE-----IYSNDDLKELLNCFLQLNSPSNH 49 (79)
Q Consensus 7 S~DPy~DFR~SM~EMI~e~~-----i~~~~dLeeLL~cYL~LN~~~~H 49 (79)
-.+|+.+.-.-.++.|.+.. ..+.+++.+|..-||.=|.++.-
T Consensus 19 k~~~~~~rl~wFq~~i~e~~~~~~~~~t~~e~~~lI~~yl~R~d~ELe 66 (144)
T 2kkm_A 19 KRVHELARVKFMQDVVNSDTFKGQPIFDHAHTREFIQSFIERDDTELD 66 (144)
T ss_dssp CCHHHHHHHHHHHHHHHSTTTTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHcccccccccCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 35677888888888888765 58999999999999988877753
No 31
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=24.18 E-value=96 Score=22.76 Aligned_cols=45 Identities=11% Similarity=0.372 Sum_probs=29.6
Q ss_pred cccChHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCCCCchHhHHHH
Q 043741 6 DSNDPYEDFRRSMLQMIMEKE----IYSNDDLKELLNCFLQLNSPSNHDVIVQA 55 (79)
Q Consensus 6 ~S~DPy~DFR~SM~EMI~e~~----i~~~~dLeeLL~cYL~LN~~~~H~~I~~a 55 (79)
-..+||+||-+-+.+-+.+.+ ...|..+ .+ |.-|+-.-=+-|+++
T Consensus 181 GPkEpf~dfVdRl~kalrae~~~~~~~~~~~~----~~-l~qnAnpdck~~lra 229 (262)
T 1d1d_A 181 GPSESFVDFANRLIKAVEGSDLPPSARAPVII----DC-FRQKSQPDIQQLIRA 229 (262)
T ss_dssp CSSSCHHHHHHHHHHHHHTSSCCTTTTTHHHH----HH-HTTSSCHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHhhccCcccchhhHH----HH-HHHhcCHHHHHHHHH
Confidence 457899999999999998743 3444443 33 445655555555554
No 32
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.98 E-value=67 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCC-chH-hHHHH
Q 043741 12 EDFRRSMLQMIMEKEIYSNDDLKELLNCFLQLNSPS-NHD-VIVQA 55 (79)
Q Consensus 12 ~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~-~H~-~I~~a 55 (79)
++..+.|...|.|- ..-.|+.|...|.-.||.|. +|. +|.++
T Consensus 9 ~~~~k~~~~ii~EY--~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~ 52 (364)
T 3l6a_A 9 EELLKLTETVVTEY--LNSGNANEAVNGVREMRAPKHFLPEMLSKV 52 (364)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 34455566666552 22256799999999999995 554 44444
No 33
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=23.30 E-value=90 Score=22.21 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 043741 8 NDPYEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQ 42 (79)
Q Consensus 8 ~DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~ 42 (79)
..|+.+|-++|..=+......++++|++ +||-.
T Consensus 103 ~~~~~~li~g~~~Dl~~~~~~t~~dL~~--Y~~~v 135 (294)
T 4hd1_A 103 MEPFLRLIEANRRDQRKHTYDTWEDLRD--YCRYS 135 (294)
T ss_dssp SHHHHHHHHHHHHHHHCSBCCSHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCCHHHHHH--HHHhc
Confidence 4566777777765556667788888875 67654
No 34
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=21.01 E-value=1.4e+02 Score=19.19 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKELLNCFLQL 43 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeLL~cYL~L 43 (79)
|..--..-.+|++.-.-.+|+.|-+|=..|+.+
T Consensus 14 Y~~il~lS~~ML~aA~~gdWD~Lv~lE~~y~~l 46 (123)
T 3nkz_A 14 YQQILTLSEQMLVLATEGNWDALVDLEMTYLKA 46 (123)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 566666778999999999999999999999864
No 35
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=20.75 E-value=70 Score=23.15 Aligned_cols=44 Identities=11% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCc-hHhHHHHHHHH
Q 043741 16 RSMLQMIMEKEIYSNDDLKELLNCFLQLNSPSN-HDVIVQAFTGV 59 (79)
Q Consensus 16 ~SM~EMI~e~~i~~~~dLeeLL~cYL~LN~~~~-H~~I~~aF~dl 59 (79)
+-++....|+|+.+.+.+++++..|-+-=.|.. -++|-+|.+|=
T Consensus 14 ~ALe~lL~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp 58 (209)
T 4fm4_A 14 DALFVLTKELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDP 58 (209)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCH
Confidence 466777889999999999999999985433333 35667777653
No 36
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=20.71 E-value=46 Score=26.10 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCCCC
Q 043741 31 DDLKELLNCFLQLNSPS 47 (79)
Q Consensus 31 ~dLeeLL~cYL~LN~~~ 47 (79)
..|..||.|||+=...+
T Consensus 23 sfmkrllrcylsderse 39 (518)
T 4gou_A 23 SFMKRLLRCYLSDERSE 39 (518)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccccch
Confidence 56778999999865443
No 37
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=20.65 E-value=1.1e+02 Score=21.87 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 043741 11 YEDFRRSMLQMIMEKEIYSNDDLKELLN 38 (79)
Q Consensus 11 y~DFR~SM~EMI~e~~i~~~~dLeeLL~ 38 (79)
|+-....++.+++++|+.+.++|.+...
T Consensus 69 Ye~Wl~ale~lLvekG~it~~EL~~r~~ 96 (219)
T 3qyh_B 69 YELWLHVFENLLVEKGVLTATEVATGKA 96 (219)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHhhh
Confidence 6778889999999999999999998766
Done!