BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043742
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
 pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
          Length = 528

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 38  AVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFG 71
           A  VG   ++RF+ PV+Y  Q+  +DLL E+  G
Sbjct: 497 ATSVGTXSIRRFLRPVAY--QNXPEDLLPEDFLG 528


>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
 pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
          Length = 365

 Score = 27.3 bits (59), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 10  HAKKILRKYPYNRPQSATITAE 31
           H  KI++K PY RP+  T++ +
Sbjct: 139 HNGKIIQKTPYPRPRGTTVSVQ 160


>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
 pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
          Length = 364

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 10  HAKKILRKYPYNRPQSATITAE 31
           H  KI++K PY RP+  T++ +
Sbjct: 139 HNGKIIQKTPYPRPRGTTVSVQ 160


>pdb|1H7U|A Chain A, Hpms2-atpgs
 pdb|1H7U|B Chain B, Hpms2-atpgs
          Length = 365

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 10  HAKKILRKYPYNRPQSATITAE 31
           H  KI++K PY RP+  T++ +
Sbjct: 139 HNGKIIQKTPYPRPRGTTVSVQ 160


>pdb|3OPB|A Chain A, Crystal Structure Of She4p
 pdb|3OPB|B Chain B, Crystal Structure Of She4p
          Length = 778

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 13  KILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQ 62
           ++L K+ YN  +   +  E     L + + E+E+K  M+ +   +QSSFQ
Sbjct: 158 QLLNKFKYNFKEVRFLVKE-----LILRISEDEVKSMMLIIFAELQSSFQ 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.143    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,065,788
Number of Sequences: 62578
Number of extensions: 111364
Number of successful extensions: 216
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)