Query 043742
Match_columns 98
No_of_seqs 111 out of 644
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 70.4 16 0.00053 23.4 6.1 59 34-96 5-69 (107)
2 1y74_B MLIN-2/CASK, peripheral 59.2 2.7 9.4E-05 23.9 0.6 13 54-66 26-38 (50)
3 2vpk_A Myoneurin; transcriptio 55.0 22 0.00075 22.0 4.5 50 37-95 25-79 (116)
4 2i46_A Adrenocortical dysplasi 47.0 20 0.00068 25.6 3.6 47 30-81 46-94 (161)
5 1r29_A B-cell lymphoma 6 prote 46.9 32 0.0011 21.5 4.4 51 37-95 32-88 (127)
6 3ga1_A Nucleus accumbens-assoc 43.6 41 0.0014 21.2 4.5 50 37-95 36-89 (129)
7 2nz0_B Potassium voltage-gated 42.5 77 0.0026 21.5 6.1 60 32-96 32-94 (140)
8 2xko_C PIPX, global nitrogen r 38.8 3.6 0.00012 27.1 -1.2 13 54-66 5-17 (89)
9 1s1g_A Potassium voltage-gated 38.3 49 0.0017 21.9 4.4 60 32-96 10-72 (124)
10 3drx_A BTB/POZ domain-containi 36.1 42 0.0014 24.5 4.0 60 33-96 10-75 (202)
11 3b84_A Zinc finger and BTB dom 35.1 73 0.0025 19.7 4.7 49 38-95 28-79 (119)
12 1z3x_A Putative cytidyltransfe 31.4 2.2 7.4E-05 32.4 -3.7 30 30-62 208-237 (238)
13 1y6i_A Mg-chelatase cofactor G 30.9 2.9 9.8E-05 31.6 -3.1 30 30-62 200-229 (233)
14 2ppi_A Gigaxonin; BTB domain, 29.3 88 0.003 20.3 4.5 54 37-95 50-108 (144)
15 3ohu_A Transcription regulator 29.0 77 0.0026 19.6 4.0 52 37-95 35-90 (125)
16 2d5u_A N-glycanase 1; pngase, 28.1 74 0.0025 21.4 4.0 41 56-96 61-111 (124)
17 3n5b_B ASR0485 protein; PII, P 26.5 7.8 0.00027 26.4 -1.2 12 55-66 29-40 (112)
18 1buo_A POZ domain, protein (pr 26.0 1E+02 0.0035 19.0 4.2 49 37-95 31-82 (121)
19 2lkt_A Retinoic acid receptor 25.6 48 0.0016 21.4 2.6 9 36-44 23-31 (125)
20 2vkp_A BTB/POZ domain-containi 25.4 1.1E+02 0.0039 18.2 4.6 54 37-95 11-70 (109)
21 2if5_A Zinc finger and BTB dom 24.6 1.3E+02 0.0043 18.4 4.7 52 37-95 28-84 (120)
22 3bux_B E3 ubiquitin-protein li 24.2 65 0.0022 25.5 3.5 33 31-66 275-308 (329)
23 2yy9_A Zinc finger and BTB dom 23.6 93 0.0032 19.8 3.7 50 37-95 28-80 (135)
24 3htm_A Speckle-type POZ protei 21.0 1.7E+02 0.0057 18.7 4.6 54 37-95 37-93 (172)
25 2ksn_A Ubiquitin domain-contai 20.4 24 0.00082 24.7 0.3 32 28-60 84-115 (137)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=70.41 E-value=16 Score=23.39 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=43.8
Q ss_pred CCeEEEEecCCcceEEEEEecCcC-ch--HHHHHHh-hhhcC--CCCCCCceeeeCcHHHHHHHHHHHh
Q 043742 34 KGYLAVYVGENEMKRFMIPVSYLI-QS--SFQDLLT-EEEFG--FDHPMGGLTIPCNEDIFIDLISRLK 96 (98)
Q Consensus 34 kG~~aVyVG~e~~~RfvVp~~yL~-hP--~F~~LL~-eeEfG--~~~~~G~L~IPC~~~~F~~vl~~l~ 96 (98)
...+.+-||. ++|.+..+-|. +| .|..+.. ..++. .+. .|.+-|-.+...|.+|+..+.
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCT-TSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCC-CceEEecCChHHHHHHHHHhC
Confidence 3467888996 78999987775 34 5777766 43443 233 489999999999999998775
No 2
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=59.23 E-value=2.7 Score=23.89 Aligned_cols=13 Identities=38% Similarity=0.490 Sum_probs=11.6
Q ss_pred cCcCchHHHHHHh
Q 043742 54 SYLIQSSFQDLLT 66 (98)
Q Consensus 54 ~yL~hP~F~~LL~ 66 (98)
..|+.|-|++||.
T Consensus 26 ~lL~~PHfqaLl~ 38 (50)
T 1y74_B 26 RILTQPHFMALLQ 38 (50)
T ss_dssp HHHHSHHHHHHHH
T ss_pred HHHcCHHHHHHHH
Confidence 5688999999999
No 3
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=54.98 E-value=22 Score=22.00 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=36.6
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHhhhhcCCCCCCCceeee---CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLTEEEFGFDHPMGGLTIP---CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~eeEfG~~~~~G~L~IP---C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~----~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST----S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC----C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC----C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 3456664 5677777776 579999999832 2 2 578888 7899999998865
No 4
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=46.96 E-value=20 Score=25.63 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=30.5
Q ss_pred ccCCCCeEEEEecCCcceEEEEEecCcCchHHHHHHh--hhhcCCCCCCCceee
Q 043742 30 AEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EEEFGFDHPMGGLTI 81 (98)
Q Consensus 30 ~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~--eeEfG~~~~~G~L~I 81 (98)
.+.|.=--++.|.+.. + .+++|-.+.-+..++ |+||||....|.|-|
T Consensus 46 pdt~~v~A~llvSDgt---h--svrclvTrEA~~~sdwEEk~Fgfr~~egrlll 94 (161)
T 2i46_A 46 PDTSDVGATLLVSDGT---H--SVRCLVTREALDTSDWEEKEFGFRGTEGRLLL 94 (161)
T ss_dssp CCCTTSCEEEEEECSS---C--EEEEEECHHHHHTSCCTTSCSSCTTCTTEEEE
T ss_pred CCCCCceeEEEEcCCc---e--EEEEEecHHHhhhhhhhhhhcCcccccceEEE
Confidence 3555556677776642 1 233444566666666 999999987788766
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=46.95 E-value=32 Score=21.54 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=36.9
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHh--hhhcCCCCCCCceee-e-CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLT--EEEFGFDHPMGGLTI-P-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~--eeEfG~~~~~G~L~I-P-C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|++++. -.| .. ..|.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 3455664 5677777776 6899999998 333 23 68999 3 5889999998865
No 6
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=43.56 E-value=41 Score=21.22 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=36.7
Q ss_pred EEEEecCCcceEEEEEecCcC--chHHHHHHhhhhcCCCCCCCceeee--CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYLI--QSSFQDLLTEEEFGFDHPMGGLTIP--CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL~--hP~F~~LL~eeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..|.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-----~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-----RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-----CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-----CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4566664 55777665554 68999999833 23 689997 8899999999865
No 7
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=42.48 E-value=77 Score=21.45 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCCCeEEEEecCCcceEEEEEecCc-CchHHHHHHh--hhhcCCCCCCCceeeeCcHHHHHHHHHHHh
Q 043742 32 VPKGYLAVYVGENEMKRFMIPVSYL-IQSSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96 (98)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL-~hP~F~~LL~--eeEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 96 (98)
.....+.+-||. +||.+..+-| ++|- .+|. +...-++.+.|.+-|-.|...|.+||..+.
T Consensus 32 ~~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 32 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp TCCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 456789999996 7899987765 2332 2333 222234444599999999999999999874
No 8
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=38.82 E-value=3.6 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.5
Q ss_pred cCcCchHHHHHHh
Q 043742 54 SYLIQSSFQDLLT 66 (98)
Q Consensus 54 ~yL~hP~F~~LL~ 66 (98)
.|||||-|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5999999977655
No 9
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=38.33 E-value=49 Score=21.92 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=41.4
Q ss_pred CCCCeEEEEecCCcceEEEEEecCcC-chHHHHHHh--hhhcCCCCCCCceeeeCcHHHHHHHHHHHh
Q 043742 32 VPKGYLAVYVGENEMKRFMIPVSYLI-QSSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96 (98)
Q Consensus 32 vpkG~~aVyVG~e~~~RfvVp~~yL~-hP~F~~LL~--eeEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 96 (98)
.....+.+-||. +||.+..+-|. +|- .+|. +...-++.+.|.+-|-.+...|.+||..+.
T Consensus 10 ~~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 10 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp --CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 345678899996 78999987663 232 2343 222234444599999999999999999874
No 10
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=36.05 E-value=42 Score=24.52 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=43.8
Q ss_pred CCCeEEEEecCCcceEEEEEecCcC-ch--HHHHHHh-hhhcC--CCCCCCceeeeCcHHHHHHHHHHHh
Q 043742 33 PKGYLAVYVGENEMKRFMIPVSYLI-QS--SFQDLLT-EEEFG--FDHPMGGLTIPCNEDIFIDLISRLK 96 (98)
Q Consensus 33 pkG~~aVyVG~e~~~RfvVp~~yL~-hP--~F~~LL~-eeEfG--~~~~~G~L~IPC~~~~F~~vl~~l~ 96 (98)
+.-.+.+-||. +||.+..+-|. +| .|..|.. ..++. .+. .|.+-|-.|...|.+||..+.
T Consensus 10 ~~~~V~LNVGG---~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De-~geyFIDRDP~~F~~ILnyLR 75 (202)
T 3drx_A 10 VSKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLR 75 (202)
T ss_dssp CCCEEEEEETT---EEEEEETTGGGSCTTSSTHHHHSCCCC----BCT-TCCEEECSCSTTHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEEeHHHHhCCCcchHHHHhcCccccCcccCC-CccEEecCChHHHHHHHHHhc
Confidence 34678889996 78999988775 34 5667765 43444 233 489999999999999998774
No 11
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=35.08 E-value=73 Score=19.74 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=34.5
Q ss_pred EEEecCCcceEEEEEecCc--CchHHHHHHhhhhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 38 AVYVGENEMKRFMIPVSYL--IQSSFQDLLTEEEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 38 aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~eeEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
.+.||+ ++|-+.-..| ..|.|++++.... + +.|.|| .+.+.|+.++..+
T Consensus 28 ~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~-----~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 28 TLDVGG---LVFKAHWSVLACCSHFFQSLYGDGS-----G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEETT---EEEEECHHHHHHHCHHHHHHHTTTT-----C-CCEEECGGGHHHHHHHHHHH
T ss_pred EEEECC---EEEEeeHHHHhhcCHHHHHHHCCCC-----C-CeEEeCCCCHHHHHHHHHHH
Confidence 455665 5677766666 4789999998321 2 579998 4678999988765
No 12
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=31.36 E-value=2.2 Score=32.41 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=19.4
Q ss_pred ccCCCCeEEEEecCCcceEEEEEecCcCchHHH
Q 043742 30 AEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQ 62 (98)
Q Consensus 30 ~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~ 62 (98)
..+|+||+|+.-.-. =.-+=.+.|+||.|.
T Consensus 208 l~AP~GHLP~~~~lr---Gv~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 208 LSAPRGHLPLTNQLR---GVQVLNALLNHPAWT 237 (238)
T ss_dssp TTSCTTCCSCCCCTT---CSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCcccc---cHHHHHHHHcCcccc
Confidence 469999999864211 122446788888763
No 13
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=30.90 E-value=2.9 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=19.9
Q ss_pred ccCCCCeEEEEecCCcceEEEEEecCcCchHHH
Q 043742 30 AEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQ 62 (98)
Q Consensus 30 ~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~ 62 (98)
..+|+||+|..-.-.. -| +=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~lrG-~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQLRG-VR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCTTC-TH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCccccch-HH--HHHHHHCCcccc
Confidence 3699999998652211 22 446788898884
No 14
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=29.33 E-value=88 Score=20.27 Aligned_cols=54 Identities=4% Similarity=0.068 Sum_probs=35.7
Q ss_pred EEEEecCCcceEEEEEecCcC--chHHHHHHh-h-hhcCCCCCCCceeeeC-cHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYLI--QSSFQDLLT-E-EEFGFDHPMGGLTIPC-NEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL~--hP~F~~LL~-e-eEfG~~~~~G~L~IPC-~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..|. .|.|++++. . .|-. .. ...|.|+. +.+.|+.++..+
T Consensus 50 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~-~~~I~l~~v~~~~f~~lL~fi 108 (144)
T 2ppi_A 50 AHLVLDG---EEIPVQKNILAAASPYIRTKLNYNPPKDD-GS-TYKIELEGISVMVMREILDYI 108 (144)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHHCC------C-CCEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHcCHHHHHHHcCCCcccc-CC-CcEEEeCCCCHHHHHHHHHHH
Confidence 3455664 56777766664 899999998 1 1100 12 26799985 889999998865
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=28.97 E-value=77 Score=19.64 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=35.5
Q ss_pred EEEEecCCcceEEEEEecCcC--chHHHHHHhhhhcCCCCCCCceeee--CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYLI--QSSFQDLLTEEEFGFDHPMGGLTIP--CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL~--hP~F~~LL~eeEfG~~~~~G~L~IP--C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..|. .|.|++++... +..+ ..|.+| .+.+.|+.++..+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~---~~e~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQ---TKND-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTC---CCSS-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCC---CCCC-cEEEeCCCCCHHHHHHHHHhH
Confidence 4566764 55777666664 68999999811 1112 578887 7999999998865
No 16
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=28.13 E-value=74 Score=21.36 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=28.0
Q ss_pred cCchHHHHHHh----h----hhcCCCCCCCceeeeC--cHHHHHHHHHHHh
Q 043742 56 LIQSSFQDLLT----E----EEFGFDHPMGGLTIPC--NEDIFIDLISRLK 96 (98)
Q Consensus 56 L~hP~F~~LL~----e----eEfG~~~~~G~L~IPC--~~~~F~~vl~~l~ 96 (98)
+++|.|++-+. . +..||...++.|++|= ++.....+...|.
T Consensus 61 l~N~~f~~~V~~~~Ga~e~L~a~GF~~~~~~lvlp~~~~~~~l~~~~d~L~ 111 (124)
T 2d5u_A 61 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 111 (124)
T ss_dssp CCCHHHHHTTSSSTTHHHHHHHHTCBCCSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHcccccCCCeeecCCCCCHHHHHHHHHHHH
Confidence 67999988554 3 3459988778899994 4556666655543
No 17
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=26.47 E-value=7.8 Score=26.43 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=10.1
Q ss_pred CcCchHHHHHHh
Q 043742 55 YLIQSSFQDLLT 66 (98)
Q Consensus 55 yL~hP~F~~LL~ 66 (98)
|||||-|.-|-.
T Consensus 29 YLNHPTFGLLyr 40 (112)
T 3n5b_B 29 YINHPTWGLLYR 40 (112)
T ss_dssp EEEETTTEEEEE
T ss_pred hccCCccchhee
Confidence 999999977655
No 18
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=25.97 E-value=1e+02 Score=19.01 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=33.7
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHhhhhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLTEEEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~eeEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|++++..+ . ..+.|+ .+.+.|+.++..+
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~------~-~~i~l~~~~~~~f~~ll~~~ 82 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHRN------S-QHYTLDFLSPKTFQQILEYA 82 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTSC------C-SEEEECSSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcCC------C-cEEEeCCCCHHHHHHHHHhh
Confidence 3455664 4576666655 578899988731 2 468887 6888999888754
No 19
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=25.61 E-value=48 Score=21.38 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=8.3
Q ss_pred eEEEEecCC
Q 043742 36 YLAVYVGEN 44 (98)
Q Consensus 36 ~~aVyVG~e 44 (98)
|.+||||+.
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999986
No 20
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=25.42 E-value=1.1e+02 Score=18.16 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=36.6
Q ss_pred EEEEecCC-cceEEEEEecCc--CchHHHHHHh--hhhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 37 LAVYVGEN-EMKRFMIPVSYL--IQSSFQDLLT--EEEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e-~~~RfvVp~~yL--~hP~F~~LL~--eeEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
+.+.||++ ..++|-+.-..| ..|.|++++. -.|- . ..|.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~-~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----K-SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----C-CeEEeCCCCHHHHHHHHHHH
Confidence 34556652 126788887777 5899999998 1221 1 468887 4889999998765
No 21
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=24.58 E-value=1.3e+02 Score=18.40 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHh-h-hhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLT-E-EEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~-e-eEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|++++. . .| .. ...|.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~-~~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQ-QNVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------C-CSEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cC-CceEEeCCCCHHHHHHHHHHH
Confidence 3455664 5677776676 4799999998 1 22 12 2678888 4889999998765
No 22
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=24.18 E-value=65 Score=25.50 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=24.4
Q ss_pred cCCCCeEEE-EecCCcceEEEEEecCcCchHHHHHHh
Q 043742 31 EVPKGYLAV-YVGENEMKRFMIPVSYLIQSSFQDLLT 66 (98)
Q Consensus 31 ~vpkG~~aV-yVG~e~~~RfvVp~~yL~hP~F~~LL~ 66 (98)
-..-|..|| ||-.+..-.=.|| .|-|++|+|++
T Consensus 275 cTrlGqwAIgyV~~~~~I~qtip---~nk~l~qal~d 308 (329)
T 3bux_B 275 CTRLGQWAIGYVTADGNILQTIP---HNKPLFQALID 308 (329)
T ss_dssp SSSTTSEEEEEECTTSCEEEECC---SSCCHHHHHHH
T ss_pred cCccCceEEEEECCCCceeeeCC---CCcHHHHHHHh
Confidence 346788887 7766543555566 78999999999
No 23
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=23.59 E-value=93 Score=19.81 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=33.4
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHhhhhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLTEEEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~eeEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|++++.... + ..|.|+ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~f~aHk~vLaa~S~yF~~mf~~~~-----~-~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 28 ATLDVGG---LVFKAHWSVLACCSHFFQRIYGDGT-----G-GSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHTCC----------CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEECC---EEEehHHHHHHHhCHHHHHHHcCCC-----C-CeEEeCCCCHHHHHHHHHHH
Confidence 3455664 5677766655 3688999988321 2 578887 4678999998765
No 24
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=21.02 E-value=1.7e+02 Score=18.74 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=36.9
Q ss_pred EEEEecCCcceEEEEEecCc--CchHHHHHHhhhhcCCCCCCCceeee-CcHHHHHHHHHHH
Q 043742 37 LAVYVGENEMKRFMIPVSYL--IQSSFQDLLTEEEFGFDHPMGGLTIP-CNEDIFIDLISRL 95 (98)
Q Consensus 37 ~aVyVG~e~~~RfvVp~~yL--~hP~F~~LL~eeEfG~~~~~G~L~IP-C~~~~F~~vl~~l 95 (98)
+.+.||+ ++|-+.-..| ..|.|+.++... +.-.. ...|.|| .+.+.|+.++..+
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~-~~e~~-~~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHE-MEESK-KNRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSC-CCGGG-TTEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccC-ccccC-CCeEEecCCCHHHHHHHHHHH
Confidence 5666765 5688877776 469999999811 10012 2678887 4889999998865
No 25
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=20.38 E-value=24 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.0
Q ss_pred ccccCCCCeEEEEecCCcceEEEEEecCcCchH
Q 043742 28 ITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60 (98)
Q Consensus 28 ~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~ 60 (98)
....+|.|-+.+ +=|+...+|.+|.-+++.|.
T Consensus 84 AgItvp~gdL~~-cYDe~G~~Y~LP~yvls~P~ 115 (137)
T 2ksn_A 84 ANITLPHGALTE-CYDELGNRYQLPVYCLAPPI 115 (137)
T ss_dssp HSCBCSSCCSSE-EEETTTEEEECCGGGTCCST
T ss_pred cCCcccCCcHHH-HHhccCCccCCCeeEeeCCc
Confidence 455689999998 44555699999999999995
Done!