BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043744
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 15/309 (4%)
Query: 15 LPENYIFPPET---------RPGKSIIPLCTTIPVIDLSKASDQNRSNTIQQILKASKEF 65
+P+ YI P E K P TI + ++ ++ R N I+++ KAS ++
Sbjct: 17 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 76
Query: 66 GFFQVIKHEVPPKLINDTMDVFKEFFDMPAEDKVSFYSENPSKTCKLYTSSLSYDREEIH 125
G +I H +P L+ +EFF + E+K + ++ + + Y S L+ +
Sbjct: 77 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 136
Query: 126 LWRDNLRHPCHPLEEC-MKLWPEKPTRYREVVGAYSNEAKKXXXXXXXXXXXXXXXXXXY 184
W D H +P E+ + +WP+ P+ Y E Y+ +
Sbjct: 137 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 196
Query: 185 FRNQLS--ESLLLS--INHYPPCPNPSLTLGLVKHRDPNLITILLQGDVCGLQVLKDGEW 240
++ E LLL IN+YP CP P L LG+ H D + +T +L V GLQ+ +G+W
Sbjct: 197 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKW 256
Query: 241 IGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEARTSAALFINPAND-CVIEPT 299
+ + +P++ V++IG L+++SN K KS+ HR + N ++ R S A+F P D V++P
Sbjct: 257 VTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPL 316
Query: 300 KTLTEASNP 308
+ +P
Sbjct: 317 PEMVSVESP 325
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 15/309 (4%)
Query: 15 LPENYIFPPET---------RPGKSIIPLCTTIPVIDLSKASDQNRSNTIQQILKASKEF 65
+P+ YI P E K P TI + ++ ++ R N I+++ KAS ++
Sbjct: 18 IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 66 GFFQVIKHEVPPKLINDTMDVFKEFFDMPAEDKVSFYSENPSKTCKLYTSSLSYDREEIH 125
G +I H +P L+ +EFF + E+K + ++ + + Y S L+ +
Sbjct: 78 GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 126 LWRDNLRHPCHPLEE-CMKLWPEKPTRYREVVGAYSNEAKKXXXXXXXXXXXXXXXXXXY 184
W D H +P E+ + +WP+ P+ Y E Y+ +
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197
Query: 185 FRNQLS--ESLLLS--INHYPPCPNPSLTLGLVKHRDPNLITILLQGDVCGLQVLKDGEW 240
++ E LLL IN+YP CP P L LG+ H D + +T +L V GLQ+ +G+W
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKW 257
Query: 241 IGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEARTSAALFINPAND-CVIEPT 299
+ + +P++ V++IG L+++SN K KS+ HR + N ++ R S A+F P D V++P
Sbjct: 258 VTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPL 317
Query: 300 KTLTEASNP 308
+ +P
Sbjct: 318 PEMVSVESP 326
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 14/310 (4%)
Query: 1 MEKLVSIWSKDQQYLPENYIFPPET---------RPGKSIIPLCTTIPVIDLSKASDQNR 51
+E++ S+ +P+ YI P E K P TI + ++ ++ R
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 52 SNTIQQILKASKEFGFFQVIKHEVPPKLINDTMDVFKEFFDMPAEDKVSFYSENPSKTCK 111
N I+++ KAS ++G +I H +P L +EFF + E+K + ++ + +
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 112 LYTSSLSYDREEIHLWRDNLRHPCHPLEE-CMKLWPEKPTRYREVVGAYSNEAKKXXXXX 170
Y S L+ + W D H +P E+ + +WP+ P+ Y E Y+ +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 171 XXXXXXXXXXXXXYFRNQLS--ESLLLS--INHYPPCPNPSLTLGLVKHRDPNLITILLQ 226
++ E LLL IN+YP CP P L LG+ H D + +T +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 227 GDVCGLQVLKDGEWIGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEARTSAAL 286
V GLQ+ +G+W+ + +P++ V +IG L+++SN K KS+ HR + N ++ R S A+
Sbjct: 244 NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303
Query: 287 FINPANDCVI 296
F P D ++
Sbjct: 304 FCEPPKDKIV 313
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 134/297 (45%), Gaps = 18/297 (6%)
Query: 38 IPVIDLSKASDQNRSNTIQQILKASKEFGFFQVIKHEVPPKLINDTMDVFKEFFDMPAED 97
P+I L K + R+ T + I A + +GFF+++ H +P ++ + K + E
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 98 KVSFYSENPSKTCKLYTSSLSYDREEIHLWRDNLRH-PCHPLEECMKLWPEKPTRYREVV 156
+ F SK + + ++ E + L+H P + E P+ YREV
Sbjct: 64 R--FKELVASKALEGVQAEVTDXDWESTFF---LKHLPISNISEV----PDLDEEYREVX 114
Query: 157 GAYSNEAKKXXXXXXXXXXXXXXXXXXYFRNQLSES----LLLSINHYPPCPNPSLTLGL 212
++ +K Y +N S +++YPPCP P L GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 213 VKHRDPNLITILLQGD-VCGLQVLKDGEWIGVEPLPNAFVINIGYILQVISNNKLKSVEH 271
H D I +L Q D V GLQ+LKDG+WI V P ++ V+N+G L+VI+N K KSV H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 272 RAVTNSKEARTSAALFINPANDCVIEPTKTLTEA---SNPPIYRAFQYQEFLMDYIS 325
R + AR S A F NP +D VI P L E N +Y F + ++ Y
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAG 291
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 20/282 (7%)
Query: 56 QQILKASKEFGFFQVIKHEVPPKLINDTMDVFKEFFDMPAEDKVSFYSENPSK------T 109
Q++ + + +GF + +++ I+ +D K FF +P E K +
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 110 CKLYTSSLSYDREEI-HLWRD---NLRHPCHPLEECMKLWPEKPTRYREVVGAYSNEAKK 165
+ + YD +E H RD R H + +WP + ++ V N
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXAD---NVWPAEIPAFKHDVSWLYNSLDG 140
Query: 166 XXXXXXXXXXXXXXXXXXYFRNQLSES-LLLSINHYPPCPNPSLTLGLVKHRDPNLITIL 224
+F+ + + +L + HYPP P + + H D N IT+L
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLL 200
Query: 225 LQGDVCGLQVL-KDGEWIGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEART- 282
L + GL+VL +DG+W+ + P P VINIG L+ ++NN L S HR V E R
Sbjct: 201 LGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGV 260
Query: 283 ---SAALFINPANDCVIEPTKTLTEASNPPIY-RAFQYQEFL 320
S F++ A+D I+ + A NP Y + EFL
Sbjct: 261 PRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFL 302
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 190 SESLLLSINHYPPCPNPSLTLGL--VKHRDPNLITILLQGDVCGLQV-LKDGEWIGVEPL 246
S LL I HYPP + H D NLIT+L + GLQV KDG W+ V
Sbjct: 147 SHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSD 206
Query: 247 PNAFVINIGYILQVISNNKLKSVEHRAV----TNSKEARTSAALFINPANDCVI 296
+INIG LQ S+ S HR + T+ ++R S LF++P V+
Sbjct: 207 FGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 116/303 (38%), Gaps = 53/303 (17%)
Query: 36 TTIPVIDLSK--ASDQN-RSNTIQQILKASKEFGFFQVIKHEVPPKLINDTMDVF----- 87
+P ID+S DQ + QQI AS++ GFF + H + + ++ F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 88 -------------KE---------FFDMPAEDKV-SFYSENPSKTCKLYTSSLSYDREEI 124
KE + +P + V SF NP+ T E+
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 125 HLWRDNLRHPCHPLEECMKLWPEKPTRYREVVGAYSNEAKKXXXXXXXXXXXXXXXXXXY 184
++W D +HP ++ + + Y +V G S K +
Sbjct: 127 NVWPDETKHPG--FQDFAEQY------YWDVFGLSSALLKGYALALGKEENFFAR----H 174
Query: 185 FR--NQLSESLLLSINHYPPCPNPSLT-------LGLVKHRDPNLITILLQGDVCGLQVL 235
F+ + L+ +L+ + P P ++ L H D +LIT+L Q +V LQV
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVE 234
Query: 236 KDGEWIGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEARTSAALFINPANDCV 295
+ +E ++IN G + ++NN K+ HR + E R S F+N D V
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSV 293
Query: 296 IEP 298
I+P
Sbjct: 294 IDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 116/303 (38%), Gaps = 53/303 (17%)
Query: 36 TTIPVIDLSK--ASDQN-RSNTIQQILKASKEFGFFQVIKHEVPPKLINDTMDVF----- 87
+P ID+S DQ + QQI AS++ GFF + H + + ++ F
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 88 -------------KE---------FFDMPAEDKV-SFYSENPSKTCKLYTSSLSYDREEI 124
KE + +P + V SF NP+ T E+
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 125 HLWRDNLRHPCHPLEECMKLWPEKPTRYREVVGAYSNEAKKXXXXXXXXXXXXXXXXXXY 184
++W D +HP ++ + + Y +V G S K +
Sbjct: 127 NVWPDETKHPG--FQDFAEQY------YWDVFGLSSALLKGYALALGKEENFFAR----H 174
Query: 185 FR--NQLSESLLLSINHYPPCPNPSLT-------LGLVKHRDPNLITILLQGDVCGLQVL 235
F+ + L+ +L+ + P P ++ L H D +LIT+L Q +V LQV
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVE 234
Query: 236 KDGEWIGVEPLPNAFVINIGYILQVISNNKLKSVEHRAVTNSKEARTSAALFINPANDCV 295
+ +E ++IN G + ++NN K+ HR + E R S F+N D V
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGYDSV 293
Query: 296 IEP 298
I+P
Sbjct: 294 IDP 296
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 IWSKDQQYLPENYIFPPETRPGKSIIPLCTTIPVIDLSKASDQNRSNTIQQILKASKEFG 66
IWSK +Q +N PGK +I + + +++ +KA+D +R+N I QI + K+
Sbjct: 167 IWSKTRQTKRKN--------PGKRVIVMIDYLQLLEPAKAND-SRTNQISQISRDLKKMA 217
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 7 IWSKDQQYLPENYIFPPETRPGKSIIPLCTTIPVIDLSKASDQNRSNTIQQILKASKEFG 66
IWSK +Q +N PGK +I + + +++ +KA+D +R+N I QI + K+
Sbjct: 296 IWSKTRQTKRKN--------PGKRVIVMIDYLQLLEPAKAND-SRTNQISQISRDLKKMA 346
>pdb|3CGH|A Chain A, Crystal Structure Of A Susd Homolog (Bt_3984) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 516
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 265 KLKSVEHRAVTNSKEARTSAALFINPANDCVIE-----PTKTLTEASNPPIYRAFQYQE 318
KL+ A N +A+ A +NPAN VIE T E S PIY A +Y +
Sbjct: 199 KLRLAIRIAYANPVKAQQXAEEAVNPANGGVIESNADNATWNYFETSQNPIYVATRYNQ 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,681,122
Number of Sequences: 62578
Number of extensions: 368337
Number of successful extensions: 818
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 15
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)