BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043745
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 96/122 (78%), Positives = 114/122 (93%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 63 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 122
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 123 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
Query: 133 RI 134
RI
Sbjct: 183 RI 184
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 96/140 (68%), Positives = 123/140 (87%), Gaps = 3/140 (2%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAGQERYR ITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVIM++GNK+DL+HLRAV T++A+++AE+ LSFIETSAL++ NVE+AF+ IL+EIY
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
Query: 133 RIISKKSL---SSGEPAPSN 149
RI+S+K + ++ + +P N
Sbjct: 168 RIVSQKQIADRAAHDESPGN 187
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 209 bits (531), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 113/122 (92%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 51 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 110
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 111 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
Query: 133 RI 134
RI
Sbjct: 171 RI 172
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 207 bits (526), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 112/120 (93%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 72 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 111/120 (92%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 72 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 110/120 (91%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 54 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVI ++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 114 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 110/120 (91%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV+G+TIKAQIWDTAG ERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHA
Sbjct: 48 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
DSNIVI ++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIY
Sbjct: 108 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 104/123 (84%)
Query: 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN 75
+ IKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK +FEN+ +WLKELRD+ADSN
Sbjct: 54 NKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSN 113
Query: 76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135
IVI+++GNK+DLKHLR + DA YA++E L+FIETSALEA NVE AF +L+EIY +
Sbjct: 114 IVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVR 173
Query: 136 SKK 138
KK
Sbjct: 174 QKK 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 113/148 (76%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
++EG+ IKAQIWDTAGQERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++
Sbjct: 55 LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
AD N+ + +IGNK+DL HLRAV TE+++++A+ L F ETSAL + NV+KAF+ +++ I
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
Query: 132 YRIISKKSLSSGEPAPSNIKEGQTIVVG 159
Y+ +SK + G+ + + G + G
Sbjct: 175 YQKVSKHQMDLGDSSANGNANGASAPNG 202
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 98/120 (81%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
+KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK T+ V RWLKEL DHA++ IV+
Sbjct: 59 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138
M++GNK+DL R V TE+A+ +AE GL F+ETSAL++ NVE AF+T+L EI+ +SK+
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 98/120 (81%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
+KAQIWDTAG ERYRAITSAYYRGA+GALLV+D+TK T+ V RWLKEL DHA++ IV+
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138
M++GNK+DL R V TE+A+ +AE GL F+ETSAL++ NVE AF+T+L EI+ +SK+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 160 bits (406), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 103/128 (80%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+VE + IKAQIWDTAG ERYRAITSAYYRGA+GAL+VYD++K +++EN + WL ELR++A
Sbjct: 53 EVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENA 112
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
D N+ + +IGNK+DL HLRAV T++A+++A + F ETSAL + NV+KAF+ ++ I+
Sbjct: 113 DDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIF 172
Query: 133 RIISKKSL 140
+++SK +
Sbjct: 173 QMVSKHQV 180
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 92/124 (74%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+ TF +++ WL++ R H+
Sbjct: 65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 124
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
SN+VIM+IGNK+DL+ R V E+ +++A GL F+ETSA A NVE+AF EIYR
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
Query: 134 IISK 137
I +
Sbjct: 185 KIQQ 188
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 90/119 (75%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+ TF +++ WL++ R H++
Sbjct: 54 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN 113
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
SN+VIM+IGNK+DL+ R V E+ +++A GL F+ETSA A NVE+AF EIY
Sbjct: 114 SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ +A
Sbjct: 51 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 110
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
S ++ +++GNK DLK R V + A+ +A+ + F+ETSAL++ NVE AF T+ +I
Sbjct: 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
+S+++L+ E +G + + G S NT CC
Sbjct: 171 ESMSQQNLN--ETTQKKEDKGN-VNLKGQSLTNTGGCCC 206
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ +A
Sbjct: 51 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 110
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
S ++ +++GNK DLK R V + A+ +A+ + F+ETSAL++ NVE AF T+ +I
Sbjct: 111 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 170
Query: 133 RIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 171
+S+++L+ E +G + + G S NT CC
Sbjct: 171 ESMSQQNLN--ETTQKKEDKGN-VNLKGQSLTNTGGGCC 206
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 100/160 (62%), Gaps = 17/160 (10%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 54 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 113
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 114 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 128 LSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 167
+EI KK + G A GGA ++N K
Sbjct: 174 AAEI-----KKRMGPGATA------------GGAEKSNVK 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 86/121 (71%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+
Sbjct: 58 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 117
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
+ N VI++IGNK DL+ R V E+A+ +AE GL F+E SA NVE AF +IY
Sbjct: 118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
Query: 133 R 133
+
Sbjct: 178 Q 178
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 87/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +E +T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F+NV +W++E
Sbjct: 47 KIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE 106
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL R V +++ + A+ G+ FIETSA A NVE+AF T+
Sbjct: 107 IDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
Query: 128 LSEI 131
EI
Sbjct: 167 AGEI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 89/124 (71%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT ++ NV +WL+E
Sbjct: 47 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 106
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK+DL + V A+ +A+ G+ F+ETSA A NVE+AF T+
Sbjct: 107 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 128 LSEI 131
+EI
Sbjct: 167 AAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 89/124 (71%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT ++ NV +WL+E
Sbjct: 47 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE 106
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK+DL + V A+ +A+ G+ F+ETSA A NVE+AF T+
Sbjct: 107 IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166
Query: 128 LSEI 131
+EI
Sbjct: 167 AAEI 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 54 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 113
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 114 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173
Query: 128 LSEI 131
+EI
Sbjct: 174 AAEI 177
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 37 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 96
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 97 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 156
Query: 128 LSEI 131
+EI
Sbjct: 157 AAEI 160
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 63 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 122
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 123 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182
Query: 128 LSEI 131
+EI
Sbjct: 183 AAEI 186
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 44 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 103
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 104 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 128 LSEI 131
+EI
Sbjct: 164 AAEI 167
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 44 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 103
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 104 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163
Query: 128 LSEI 131
+EI
Sbjct: 164 AAEI 167
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 86/123 (69%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+V G+ IK QIWDTAGQ R+RA+T +YYRGA GAL+VYD+T+ +T+ ++S WL + R+
Sbjct: 73 EVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT 132
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
+ N VI++IGNK DL+ R V E+A+ +AE GL F+E SA NVE AF +IY
Sbjct: 133 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
Query: 133 RII 135
+ I
Sbjct: 193 QNI 195
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 89/131 (67%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++
Sbjct: 44 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 103
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA +++ M++GNK D+ R V+ E + A G+ F+ETSA INVE AF T+
Sbjct: 104 IEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
Query: 128 LSEIYRIISKK 138
+I + KK
Sbjct: 164 ARDIKAKMDKK 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 87/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 71 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 130
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++GNK DL + V A+ +A+ G+ F+ETSA A NVE++F T
Sbjct: 131 IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTX 190
Query: 128 LSEI 131
+EI
Sbjct: 191 AAEI 194
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 86/119 (72%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+++G+T+K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT +F V WL+E+ +A
Sbjct: 64 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 123
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ +++GNK DLK R V + A+ +A+ + F+ETSAL++ NVE AF T+ +I
Sbjct: 124 TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 86/124 (69%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T +F+N+ W++
Sbjct: 46 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN 105
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA +++ M++GNK D+ R V+ E + A G+ F+ETSA INVE AF T+
Sbjct: 106 IEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165
Query: 128 LSEI 131
+I
Sbjct: 166 ARDI 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
+++G+ +K QIWDTAGQER+R IT +YYR A GA+L YD+TK ++F +V W++++R +
Sbjct: 71 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY 130
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
A SNIV ++IGNK+DL LR V+ +AQS AE + L IETSA ++ NVE+AF + +E
Sbjct: 131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190
Query: 131 I 131
+
Sbjct: 191 L 191
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 87/124 (70%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 46 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 105
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +A N+ +++G K DL + V A+ +A+ G+ F+ETSA A NVE++F T+
Sbjct: 106 IDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165
Query: 128 LSEI 131
+EI
Sbjct: 166 AAEI 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 80/122 (65%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
V+G +K Q+WDTAGQER+R++T AYYR A LL+YDVT +F+N+ WL E+ ++
Sbjct: 53 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY 112
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
A ++ +M++GNK D H R V ED + A+ GL F+ETSA +NV+ AF I E+
Sbjct: 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
Query: 132 YR 133
R
Sbjct: 173 KR 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 85/123 (69%), Gaps = 4/123 (3%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
V G+T+K QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ +++ WL + R A
Sbjct: 68 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA 127
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF----QTIL 128
NIV+++ GNK DL R V +A +A+ L F+ETSAL NVE+AF +TIL
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
Query: 129 SEI 131
++I
Sbjct: 188 NKI 190
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 80/121 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V T+K +IWDTAGQERY ++ YYRGA A++V+DVT +FE +W++EL+ +
Sbjct: 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
N+V+ + GNK+DL R V EDAQ+YA+ GL F+ETSA A NV++ F I + R
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
Query: 134 I 134
+
Sbjct: 176 V 176
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ ++ WL + R A
Sbjct: 53 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 112
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
NIVI++ GNK DL R V +A +A+ L F+ETSAL NVE+AF +I
Sbjct: 113 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
Query: 133 RIISKKSLSSGEPAPSNI 150
+ SGE P +
Sbjct: 173 -----NKIESGELDPERM 185
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
++ G +K QIWDTAGQER+R ITS YYRG G ++VYDVT +F NV RWL E+ +
Sbjct: 52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC 111
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
D ++ +++GNK D + V TEDA +A + G+ ETSA E +NVE+ F I +
Sbjct: 112 D-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
Query: 133 R 133
R
Sbjct: 171 R 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ + G+ +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT TF N+ +W K
Sbjct: 58 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 117
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA+ ++++GNK+D++ R V + ++ A+ G+ FIE+SA NV + F T+
Sbjct: 118 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
Query: 128 LSEIYRIISKKSL 140
I I L
Sbjct: 177 AKLIQEKIDSNKL 189
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%)
Query: 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79
K IWDTAGQER+ ++ YYRG+ A++VYD+TK +F + +W+KEL++H NIV+
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
+ GNK DL +R V +DA+ YAE G +ETSA AIN+E+ FQ I +I
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T TF W+KEL+ A
Sbjct: 49 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL RAV ++AQ+YA+ L F+ETSA A+NV + F I
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 75/114 (65%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T TF W+KEL+ A
Sbjct: 47 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 106
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL RAV ++AQ+YA+ L F+ETSA A+NV + F I
Sbjct: 107 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ + G+ +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T TF N+ +W K
Sbjct: 41 KIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT 100
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA+ ++++GNK+D++ R V + ++ A+ G+ FIE+SA NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 76/112 (67%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
V G+ +K QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ ++ WL + R A
Sbjct: 54 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 113
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NIVI++ GNK DL R V +A +A+ L F+ETSAL +VE+AF
Sbjct: 114 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ + G+ +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT TF N+ +W K
Sbjct: 45 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 104
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA+ ++++GNK+D++ R V + ++ A+ G+ FIE+SA NV + F T+
Sbjct: 105 VNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 51 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I
Sbjct: 111 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I ++
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 11 DFQVEG-----RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
DF+V+ + +K QIWDTAGQERYR IT+AYYRGA+G +L+YD+T +F V W
Sbjct: 59 DFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWA 118
Query: 66 KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
+++ ++ N ++++GNK D++ R V TE Q AE+ G F E SA E I+V +AF+
Sbjct: 119 TQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178
Query: 126 TILSEI 131
++ I
Sbjct: 179 RLVDAI 184
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAG ERY ++ YYRGA A++VYD+T TF W+KEL+ A
Sbjct: 49 LDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 108
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL RAV ++AQ+YA+ L F+ETSA A+NV + F I
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 51 LDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 110
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
NIVI + GNK DL + RAV ++AQSYA+ L F ETSA + NV + F I ++
Sbjct: 111 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAGQERY ++ YYRGA A++VYD+T TF W+KEL+ A
Sbjct: 52 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS 111
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
+IVI + GNK DL + R V E+AQ+YA+ L F+ETSA A+NV F I ++
Sbjct: 112 PSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ + G+ +K QIWDTAGQER+R IT+AYYRGA G +LVYD+T TF N+ +W K
Sbjct: 41 KIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT 100
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA+ ++++GNK+D R V + ++ A+ G+ FIE+SA NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
V G+ +K QIWDTAG ER+R++T +YYRGA GALLVYD+T T+ ++ WL + R A
Sbjct: 51 NVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 110
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NIVI++ GNK DL R V +A +A+ L F+ETSAL +VE+AF
Sbjct: 111 SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ + G+ +K Q+WDTAGQER+R IT+AYYRGA G +LVYDVT TF N+ +W K
Sbjct: 41 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT 100
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+ +HA+ ++++GNK+D R V + ++ A+ G+ FIE+SA NV + F T+
Sbjct: 101 VNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 75/114 (65%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ T+K +IWDTAG ERY ++ YYRGA A++VYD+T +F W+KEL+ A
Sbjct: 49 LDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 108
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
NIVI + GNK DL + RAV ++AQSYA+ L F+ETSA ++NV + F I
Sbjct: 109 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 11 DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
DF+V+ + IK QIWDTAGQERYR IT+AYYRGA+G LL+YD+ +F V W
Sbjct: 58 DFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWA 117
Query: 66 KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
+++ ++ N ++++GNK DL+ R V ED + A+ G F E SA E INV++ F+
Sbjct: 118 TQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177
Query: 126 TILSEI 131
++ I
Sbjct: 178 RLVDVI 183
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 11 DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
DF+V+ + IK QIWDTAG ERYR IT+AYYRGA G +L YD+T +F V W
Sbjct: 44 DFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS 103
Query: 66 KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
+++ ++ N ++++GNK D + R V++E + A+ G F E SA + INV++ F+
Sbjct: 104 TQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163
Query: 126 TILSEIYRIISKKSLSSGEPAPSNIKEG 153
++ I S +SL + +PA + K+G
Sbjct: 164 RLVDVICEKXS-ESLDTADPAVTGAKQG 190
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 72/115 (62%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
Q + K IWDTAGQER+RA+ YYRG+ A++VYD+TK TF + W++ELR H
Sbjct: 48 QYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 107
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+IV+ + GNK DL +R V DA+ YA+ F+ETSA AIN+ + F I
Sbjct: 108 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 11 DFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
DF+V+ + IK QIWDTAGQERYR IT+AYYRGA+G +L+YD+T +F V W
Sbjct: 41 DFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS 100
Query: 66 KELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQ 125
+++ ++ N ++++GNK D++ R V++E + A+ G F E SA + INV++ F+
Sbjct: 101 TQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160
Query: 126 TILSEI 131
++ I
Sbjct: 161 RLVDVI 166
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 76/112 (67%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
++ G +K QIWDTAGQER+R+IT +YYR A +L YD+T +F + WL+E+ +A
Sbjct: 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ ++ +++GNK DL R V+ + A+ ++E + + ++ETSA E+ NVEK F
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 71/115 (61%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
Q + K IWDTAG ER+RA+ YYRG+ A++VYD+TK TF + W++ELR H
Sbjct: 49 QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 108
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
+IV+ + GNK DL +R V DA+ YA+ F+ETSA AIN+ + F I
Sbjct: 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 78/114 (68%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RT++ Q+WDTAGQER+R++ +Y R + A++VYD+T +F S+W+ ++R
Sbjct: 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+TE+ + A+ + FIETSA NV++ F+ +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
++ G+ I+ QIWDTAGQER+ +ITSAYYR A G +LVYD+TK TF+++ +W+K + +A
Sbjct: 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA 128
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 131
+ ++++GNK D + R + + + +A++ G+ F E SA + NV++ F ++ +I
Sbjct: 129 SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 132 YR 133
+
Sbjct: 189 LK 190
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 78/114 (68%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RTI+ Q+WDTAGQER+R++ +Y R + A++VYD+T +F+ ++W+ ++R
Sbjct: 50 LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+ E+ + A+ + FIETSA NV++ F+ +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ R + QIWDTAGQER++++ A+YRGA +LV+DVT P TF+ + W E A
Sbjct: 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74 ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
N +++GNK DL++ R VAT+ AQ++ + + + ETSA EAINVE+AFQTI
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAPSNIKEGQ 154
+ ++ L + P P + + +
Sbjct: 171 RNALKQETEVELYNEFPEPIKLDKNE 196
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 79/118 (66%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RT++ Q+WDTAGQER+R++ +Y R + A++VYD+T +F+ S+W+ ++R
Sbjct: 46 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG 105
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+++IM++GNKTDL R + E+ + A+ + FIETSA NV++ F+ + S +
Sbjct: 106 SDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS- 74
G+ I Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ HA S
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
N I++ GNK+DL+ RAV E+A+ AE+ G+ + ETSA N+ A + +L I +
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
Query: 135 ISK 137
+ +
Sbjct: 187 MER 189
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ R + QIWDTAGQER++++ A+YRGA +LV+DVT P TF+ + W E A
Sbjct: 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74 ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
N +++GNK D ++ R VAT+ AQ++ + + + ETSA EAINVE+AFQTI
Sbjct: 112 PRDPENFPFVVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAP 147
+ ++ L + P P
Sbjct: 171 RNALKQETEVELYNEFPEP 189
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI 76
T+K +IWDTAGQER+ ++ YYR A AL+VYDVTKP +F W+KEL + A +I
Sbjct: 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
Query: 77 VIMMIGNKTDLKH---LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
+I ++GNK D R VA E+ + AE +GL F ETSA NV F I +I
Sbjct: 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 78/114 (68%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RT++ Q+WDTAGQER+R++ +Y R + A++VYD+T +F+ ++W+ ++R
Sbjct: 45 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 104
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+ E+ + A+ + FIETSA NV++ F+ +
Sbjct: 105 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 77/114 (67%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RTI+ Q+WDTAG ER+R++ +Y R + A++VYD+T +F+ ++W+ ++R
Sbjct: 57 LEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+ E+ + A+ + FIETSA NV++ F+ +
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 6/119 (5%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ R + QIWDTAGQER++++ A+YRGA +LV+DVT P TF+ + W E A
Sbjct: 52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74 ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTI 127
N +++GNK DL++ R VAT+ AQ++ + + + ETSA EAINVE+AFQTI
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ R + QIWDTAG ER++++ A+YRGA +LV+DVT P TF+ + W E A
Sbjct: 52 VDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS 111
Query: 74 ----SNIVIMMIGNKTDLKHLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAFQTIL 128
N +++GNK DL++ R VAT+ AQ++ + + + ETSA EAINVE+AFQTI
Sbjct: 112 PRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
Query: 129 SEIYRIISKKSLSSGEPAP 147
+ ++ L + P P
Sbjct: 171 RNALKQETEVELYNEFPEP 189
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 77/114 (67%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RT++ Q+WDTAG ER+R++ +Y R + A++VYD+T +F+ ++W+ ++R
Sbjct: 60 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+ E+ + A+ + FIETSA NV++ F+ +
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
+ Q+WDTAGQER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +A N
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
I++IGNK DL R V A+ A++ G+ + ETSA NVEKA +T+L I +
Sbjct: 144 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
+ Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +A N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137
I++IGNK DL R V A+ AE+ G+ + ETSA NVEK+ +T+L I + + K
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 138 KSLSSGEPAPSNIKEGQTIVVGGASEANTKKPC 170
P + G + + G A K C
Sbjct: 190 --CVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 77/114 (67%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
+E RT++ Q+WDTAG ER+R++ +Y R + A++VYD+T +F+ ++W+ ++R
Sbjct: 50 LEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127
S+++IM++GNKTDL R V+ E+ + A+ + FIETSA NV++ F+ +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
+ G+ + IWDTAGQER+ A+ YYR + GA+LVYD+T +F+ V W+KELR
Sbjct: 62 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 121
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ I + ++GNK DL+ R V+ ++A+SYAE G TSA + +E+ F
Sbjct: 122 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
+ G+ + IWDTAGQER+ A+ YYR + GA+LVYD+T +F+ V W+KELR
Sbjct: 48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ I + ++GNK DL+ R V+ ++A+SYAE G TSA + +E+ F
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
+ G+ + IWDTAGQER+ A+ YYR + GA+LVYD+T +F+ V W+KELR
Sbjct: 48 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ I + ++GNK DL+ R V+ ++A+SYAE G TSA + +E+ F
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
+ Q+WDTAG ER+R++T+A++R A+G LL++D+T +F NV W+ +L+ +A N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137
I++IGNK DL R V A+ AE+ G+ + ETSA NVEK+ +T+L I + + K
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 61/80 (76%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+ +++G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT +F NV +WL+E
Sbjct: 36 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 95
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ +A N+ +++GNK DL
Sbjct: 96 IDRYASENVNKLLVGNKCDL 115
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
D +V+G + QIWDTAGQER+R++ + +YRG+ LL + V +F+N+S W KE
Sbjct: 52 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 111
Query: 71 HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
+AD + +++GNKTD+K R V+TE+AQ++ + G + ETSA ++ NV AF+
Sbjct: 112 YADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
Query: 126 TILSEI 131
+ I
Sbjct: 171 EAVRRI 176
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+G K IWDTAGQER+R +T +YYRGA G +LVYDVT+ TF + WL EL +
Sbjct: 59 VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 118
Query: 74 SN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
N IV ++GNK D K R V + +A + FIE SA V+ AF+ ++ +I
Sbjct: 119 RNDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
+ Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +A N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
I++IGNK DL R V A+ AE+ G+ + ETSA NVEK+ +T+L I +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
+ Q+WDTAG ER+R++T+A++R A G LL +D+T +F NV W +L+ +A N
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD 129
Query: 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133
I++IGNK DL R V A+ AE+ G+ + ETSA NVEK+ +T+L I +
Sbjct: 130 IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 72/113 (63%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
++ Q+WDTAGQER+R++ +Y R + A++VYD+T +FEN ++W++++ + +++I
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
++GNKTDL LR V E+ A+ F ETSA N++ F+ S++
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
D +V+G + QIWDTAGQER+R++ + +YRG+ LL + V +F+N+S W KE
Sbjct: 50 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 109
Query: 71 HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
+AD + +++GNK D+ R V+TE+AQ++ G + ETSA +A NV AF+
Sbjct: 110 YADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
D +V+G + QIWDTAGQER+R++ + +YRG+ LL + V +F+N+S W KE
Sbjct: 48 DLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107
Query: 71 HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
+AD + +++GNK D+ R V+TE+AQ++ G + ETSA +A NV AF+
Sbjct: 108 YADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70
D +V+GR + QIWDTAGQER++++ + +YRGA LL + V +FEN+ W KE
Sbjct: 48 DLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIY 107
Query: 71 HAD----SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQ 125
+AD + +++GNK D K R V TE+AQ++ G ++ETSA + NV AF+
Sbjct: 108 YADVKDPEHFPFVVLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE 166
Query: 126 TILSEI 131
+ ++
Sbjct: 167 EAVRQV 172
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
IK IWDTAGQERY +I YYRGA A++V+D++ T + W+ +L+ SN +I
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135
+++ NK D K+ V + Q YA+ L FI+TSA N++ F + EIY+ I
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 11 DFQ-----VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWL 65
DFQ V+G Q+WDTAGQER+R+I +Y+R A G LL+YDVT +F N+ W+
Sbjct: 64 DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWV 123
Query: 66 KELRDHADSNIVIMMIGNKTDLKHLRA------VATEDAQSYAEREGLSFIETSALEAIN 119
+ D A + IM++GNK D++ A V + A G F ETSA + N
Sbjct: 124 DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183
Query: 120 VEKAFQTILSEI 131
+ +A + E+
Sbjct: 184 IVEAVLHLAREV 195
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN----IV 77
Q+WDTAGQER++++ A+YRGA +LVYDVT ++FEN+ W E HA+ N
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 78 IMMIGNKTDLKHLRAVATE-DAQSYAEREG-LSFIETSALEAINVEKAFQTI 127
+++GNK D + + + +E AQ A+ G + TSA AINV+ AF+ I
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
++G IK Q+WDTAGQER+R ++ YYR + VYD+T +F ++ W++E + H
Sbjct: 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 73 DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL---EAINVEKAFQTIL 128
+N I +++GNK DL+ V T+ AQ +A+ + ETSA + +VE F T+
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183
Query: 129 SEI 131
++
Sbjct: 184 HKL 186
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAGQE Y AI Y+R G L V+ +T+ +F + + ++ LR
Sbjct: 57 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 116
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
D N+ +++GNK+DL+ R V+ E+A++ AE+ ++++ETSA NV+K F ++ EI
Sbjct: 117 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAGQE Y AI Y+R G L V+ +T+ +F + + ++ LR
Sbjct: 61 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 120
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
D N+ +++GNK+DL+ R V+ E+A++ AE+ ++++ETSA NV+K F ++ EI
Sbjct: 121 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAGQE Y AI Y+R G L V+ +T+ +F + + ++ LR
Sbjct: 49 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
D N+ +++GNK+DL+ R V+ E+A++ AE+ ++++ETSA NV+K F ++ EI
Sbjct: 109 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
++G IK Q+WDTAGQER+R ++ YYR + VYD T +F ++ W++E + H
Sbjct: 73 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL 132
Query: 73 DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL---EAINVEKAFQTIL 128
+N I +++GNK DL+ V T+ AQ +A+ ETSA + +VE F T+
Sbjct: 133 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLA 192
Query: 129 SEI 131
++
Sbjct: 193 HKL 195
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAGQE Y AI Y+R G L V+ +T+ +F + + ++ LR
Sbjct: 47 LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 106
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
D N+ +++GNK+DL+ R V+ E+A++ A++ ++++ETSA NV+K F ++ EI
Sbjct: 107 DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAG E Y AI Y+R G L V+ +T+ +F + + ++ LR
Sbjct: 49 LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
D N+ +++GNK+DL+ R V+ E+A++ AE+ ++++ETSA NV+K F ++ EI
Sbjct: 109 DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
QV ++ +WDTAGQE + AIT AYYRGA +LV+ T +FE +S W +++
Sbjct: 48 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV 107
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
+I ++ NK DL + E+A+ A+R L F TS E +NV SE++
Sbjct: 108 -GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV--------SEVF 158
Query: 133 RIISKKSL 140
+ +++K L
Sbjct: 159 KYLAEKHL 166
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAG E Y AI Y+R G LLV+ +T+ +F + + ++ LR A
Sbjct: 50 LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA 109
Query: 73 DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
+ + I ++++GNK+DL+ R V E+A+S AE G+ ++ETSA NV+K F ++ EI
Sbjct: 110 EEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++G ++ I DTAG E Y AI Y+R G LLV+ +T+ +F + + ++ LR A
Sbjct: 46 LDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKA 105
Query: 73 DSN-IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
+ + I ++++GNK+DL+ R V E+A+S AE G+ ++ETSA NV+K F ++ EI
Sbjct: 106 EEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ + ++++ D
Sbjct: 47 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ ++++GNK+DL R V T+ AQ A G+ FIETSA V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
Query: 133 RIISKKSLSSGEPAP 147
+ +K E P
Sbjct: 165 QHKLRKLNPPDESGP 179
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ + ++++ D
Sbjct: 47 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ ++++GNK DL R V T+ AQ A G+ FIETSA V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ + ++++ D
Sbjct: 47 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ ++++GNK+DL R V T+ AQ A G+ FIETSA V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ + ++++ D
Sbjct: 47 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ ++++GNK+DL R V T+ AQ A G+ FIETSA V+ AF T++ EI
Sbjct: 107 SEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHA 72
++ R + I DTAGQE + A+ Y R G LLV+ VT +FE + ++ ++ LR
Sbjct: 48 IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
+++IGNK DL H R V E+ Q A + ++++E SA +NV++AF E+
Sbjct: 108 RDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFH----ELV 163
Query: 133 RIISK 137
R+I K
Sbjct: 164 RVIRK 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK+DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 53 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 112
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 113 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 52 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 111
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 112 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 51 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 51 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK+DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ + ++++ D
Sbjct: 64 IDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 123
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S ++ ++++GNK DL R V T+ AQ A G+ FIETSA V+ AF T++ EI
Sbjct: 124 SEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +F +++ + ++++ D
Sbjct: 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
S+ V M ++GNK DL R V T+ A A+ G+ FIETSA VE AF T++ EI
Sbjct: 124 SDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
Query: 133 RIISKK 138
+ KK
Sbjct: 183 QYRMKK 188
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GN+ DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSN 75
+ QIWD GQ + Y GA G LLVYD+T +FEN+ W +K++ + +++
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
++ ++GNK DL+H+R + E + + G S SA +V FQ + +EI I
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DT GQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ E
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG+E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DT GQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G I DTAGQE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS 74
+G IK +WDTAGQE+ + YY GA GA+L +DVT T +N++RW+KE + +
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN 116
Query: 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
I++ NK D+K+ + ++ + + + + E SA A N F
Sbjct: 117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 51 IDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 111 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTA QE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTA QE Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKE 67
+ + QV+G+ + IWDTAGQ+ Y + +Y A LL +DVT P +F+N+ +RW E
Sbjct: 72 MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 68 LRDHADSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSA 114
+ +H + I+++G KTDL+ L V Q A G ++++E SA
Sbjct: 132 V-NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190
Query: 115 LEAINVEKAFQ 125
NV FQ
Sbjct: 191 RLHDNVHAVFQ 201
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAG E Y A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++G T I DTAGQE A+ Y R G L V+ + +FE++ ++ ++++ D
Sbjct: 46 IDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 SNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
S+ V M ++GNK DL R V + AQ A G+ +IETSA VE AF T++ EI
Sbjct: 106 SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
+ DTAGQE + A+ Y R G L+VY VT +FE+V R+ + LR + ++++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
NK DL HLR V + + A + + +IETSA + +NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
+ DTAGQE + A+ Y R G L+VY VT +FE+V R+ + LR + ++++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
NK DL HLR V + + A + + +IETSA + +NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
+ DTAGQE + A+ Y R G L+VY VT +FE+V R+ + LR + ++++
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
NK DL HLR V + + A + + +IETSA + +NV+K F ++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMI 81
+ DTAGQE + A+ Y R G L+VY VT +FE+V R+ + LR + ++++
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEI 131
NK DL HLR V + + A + + +IETSA + +NV+K F ++ I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE+Y + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 57 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 115
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 116 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 112 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 57 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 115
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 116 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 166
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 112 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++++DVT T++NV W ++L
Sbjct: 45 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 103
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 104 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 154
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAGQE++ + YY A A++ +DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67
K+C V+G + I DTAGQE + A+ Y R G LLV+ + +F V + +
Sbjct: 48 KIC--SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ 105
Query: 68 -LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126
LR + ++++GNK DL+ R V +A ++ +++ E SA +NV++AF+
Sbjct: 106 ILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165
Query: 127 ILSEI 131
++ +
Sbjct: 166 LVRAV 170
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
IK +WDTAG E++ + YY A A++++DVT T++NV W ++L NI I
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPI 119
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
++ GNK D+K + A ++ ++ L + + SA N EK F
Sbjct: 120 VLCGNKVDVKERKVKAK--TITFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
IK +WDTAG E++ + YY A A++++DVT T++NV W ++L + NI I
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 112
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
++ GNK D+K + A ++ ++ L + + SA N EK F
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAG E++ + YY A A++++DVT T++NV W ++L
Sbjct: 48 FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 107
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 108 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78
IK +WDTAG E++ + YY A A++++DVT T++NV W ++L + NI I
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 111
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
++ GNK D+K + A ++ ++ L + + SA N EK F
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAG E++ + YY A A++++DVT T++NV W ++L
Sbjct: 54 FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 113
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
+ NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 114 CE-NIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71
F IK +WDTAG E++ + YY A A++++DVT T++NV W ++L
Sbjct: 52 FHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-R 110
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124
NI I++ GNK D+K + A + + ++ L + + SA N EK F
Sbjct: 111 VCENIPIVLCGNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
+V+ + +I DTAG E++ A+ Y + G LVY +T +TF ++ ++ LR
Sbjct: 45 EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
++ ++++GNK DL+ R V E Q+ A + +F+E+SA INV + F ++ +
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
I R
Sbjct: 165 INR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
+V+ + +I DTAG E++ A+ Y + G LVY +T +TF ++ ++ LR
Sbjct: 47 EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 106
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSE 130
++ ++++GNK DL+ R V E Q+ A + +F+E+SA INV + F ++ +
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
Query: 131 IYR 133
I R
Sbjct: 167 INR 169
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + V P + EN+ +W+ E
Sbjct: 63 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE 122
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
++ H N+ I+++ NK DL+ H+R V T+D ++ A R + ++E SA
Sbjct: 123 VK-HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181
Query: 115 LEAINVEKAFQT 126
V + F+T
Sbjct: 182 KTKEGVREVFET 193
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
+V+ + +I DTAG E++ A+ Y + G LVY +T +TF ++ ++ LR
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130
++ ++++GNK DL+ R V E Q+ A + +F+E+SA INV + F ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
I R
Sbjct: 165 INR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDH 71
+V+ + +I DTAG E++ A+ Y + G LVY +T +TF ++ ++ LR
Sbjct: 45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 72 ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130
++ ++++GNK DL+ R V E Q+ A + +F+E+SA INV + F ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 131 IYR 133
I R
Sbjct: 165 INR 167
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMM 80
+ DTAGQ+ Y + ++ G G +LVY VT +F+ + ++L + H + + +++
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
Query: 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134
+GNK DL R V + + AE G +F+E+SA E + F ++ EI R+
Sbjct: 135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
V+GR ++ Q+ DTAGQ+ + + Y LL + V P++F+NVS +W+ E+R H
Sbjct: 63 VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Query: 73 DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAER-EGLSFIETSALEAIN 119
I+++G ++DL+ + V E A+ AE + S+IE SAL N
Sbjct: 123 -PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
Query: 120 VEKAF 124
+++ F
Sbjct: 182 LKEVF 186
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 164 KDGVREVFE 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 47 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 106
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
++ H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 107 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 165
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 166 KTKDGVREVFE 176
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 164 KDGVREVFE 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 43 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 103 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 161
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 162 KDGVREVFE 170
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
V+G+ + +WDTAGQE Y + YRGA +L + + ++ENV +W+ ELR A
Sbjct: 52 VDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA 111
Query: 73 DSNIVIMMIGNKTDLK--------HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKA 123
N+ I+++G K DL+ H + + + ++ G ++IE S+ NV+
Sbjct: 112 -PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
Query: 124 FQTILSEIYRIISKKSL 140
F T + + + +K +
Sbjct: 171 FDTAIKVVLQPPRRKEV 187
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
V+G T+ +WDTAGQE Y + YRGA +L + + ++ENV+ +W+ ELR +A
Sbjct: 49 VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA 108
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI 118
+ I+++G K DL+ +D Q + + G I T+ E +
Sbjct: 109 -PGVPIILVGTKLDLR-------DDKQFFIDHPGAVPITTNQGEEL 146
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 164 KDGVREVFE 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 47 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 107 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 165
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 166 KDGVREVFE 174
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 43 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 103 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 161
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 162 KDGVREVFE 170
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 45 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 104
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
++ H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 163
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 164 KTKDGVREVFE 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 163
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 164 KDGVREVFE 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 48 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 108 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 167 KDGVREVFE 175
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
V+G T+ +WDTAGQE Y + YRGA LL + + ++EN+ +WL EL+ +A
Sbjct: 49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA 108
Query: 73 DSNIVIMMIGNKTDLK--------HLRAVATEDAQSYAERE---GLSFIETSALEAINVE 121
I I+++G K DL+ H A + AQ R+ + ++E S+ NV+
Sbjct: 109 -PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVK 167
Query: 122 KAFQT 126
F T
Sbjct: 168 AVFDT 172
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 45 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 104
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSA 114
++ H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 105 VK-HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA 163
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 164 KTKDGVREVFE 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 46 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 106 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 164
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 165 KDGVREVFE 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 63 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 122
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
++ H N+ I+++GNK DL+ H R V +E+ + A R ++E SA
Sbjct: 123 VK-HFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 182 KTKEGVREVFE 192
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E++
Sbjct: 46 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 106 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 164
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 165 KDGVREVFE 173
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 43 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
++ H N+ I+++GNK DL+ H R V +E+ + A R ++E SA
Sbjct: 103 VK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 161
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 162 KTKEGVREVFE 172
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKE 67
+ D +V+G+ ++ +WDTAGQE Y + Y L+ + + P + EN+ +W E
Sbjct: 63 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 122
Query: 68 LRDHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAER-EGLSFIETSA 114
++ H N+ I+++GNK DL+ H R V +E+ + A R ++E SA
Sbjct: 123 VK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181
Query: 115 LEAINVEKAFQ 125
V + F+
Sbjct: 182 KTKEGVREVFE 192
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V G+ Q+ DTAGQ+ Y Y G +LVY VT +FE + +L D
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
I IM++GNK DL R ++ E+ ++ AE +F+E+SA E F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y +L+ + + P +FENV ++W E+R
Sbjct: 45 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 105 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 162
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 163 ---TQRGLKTVFDEAIRAV 178
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y +L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y +L+ + + P +FENV ++W E+R
Sbjct: 47 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 106
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 107 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 164
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 165 ---TQRGLKTVFDEAIRAV 180
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V G+ Q+ DTAGQ+ Y Y G +LVY VT +FE + +L D
Sbjct: 49 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
I IM++GNK DL R ++ E+ ++ AE +F+E+SA E F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V G+ Q+ DTAGQ+ Y Y G +LVY VT +FE + +L D
Sbjct: 44 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132
I IM++GNK DL R ++ E+ ++ AE +F+E+SA E F+ I+ E
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 163
Query: 133 RI 134
+I
Sbjct: 164 KI 165
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y +L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V G+ Q+ DTAGQ+ Y Y G +LVY VT +FE + +L D
Sbjct: 47 VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 74 S-NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130
I IM++GNK DL R ++ E+ ++ AE +F+E+SA E F+ I+ E
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
V G T+ +WDTAGQE Y + YRGA +L + + ++ENVS +W+ EL+ +A
Sbjct: 51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA 110
Query: 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET 112
+ I+++G K DL+ +D Q + + G I T
Sbjct: 111 -PGVPIVLVGTKLDLR-------DDKQFFIDHPGAVPITT 142
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAG E Y + Y L+ + + P + EN+ +W E++
Sbjct: 48 DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 70 DHADSNIVIMMIGNKTDLK---HLR---------AVATEDAQSYAEREG-LSFIETSALE 116
H N+ I+++GNK DL+ H R V E+ + A R G ++E SA
Sbjct: 108 -HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 166
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 167 KDGVREVFE 175
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRIISK 137
++ +T+ E R + K
Sbjct: 161 ---TQRGLKTVFDEAIRAVLK 178
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 50 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 109
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 110 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 167
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 168 ---TQRGLKTVFDEAIRAV 183
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 70 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 70 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 62 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 121
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 122 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 179
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 180 ---TQRGLKTVFDEAIRAV 195
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+G+ ++ +WDTAGQE Y Y L+ + + P + EN+ +W E++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 70 DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103
H N+ I+++GNK DL++ A E A+ E
Sbjct: 105 -HFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELR 69
D +V+GR ++ +WDTAGQE Y + Y + L+ + + P + ENV +W+ E+
Sbjct: 50 DVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL 109
Query: 70 DHADSNIVIMMIGNKTDLKH-------LR-----AVATEDAQSYAEREGLS-FIETSALE 116
H + I+++G K DL++ LR V +++ QS A++ G + + E SA
Sbjct: 110 -HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKT 168
Query: 117 AINVEKAFQ 125
V + F+
Sbjct: 169 GYGVREVFE 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 53 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 112
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 113 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 170
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 171 ---TQRGLKTVFDEAIRAV 186
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
++ + +I DTAGQE + R G +LVYD+T +FE V LK + D
Sbjct: 71 IDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIK 128
Query: 74 S--NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSE 130
N+ ++++GNK DL H R V+TE+ + A +F E SA N+ + F + E
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188
Query: 131 IYR 133
+ R
Sbjct: 189 VRR 191
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAG E Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAG E Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 103 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 44 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H + I+++G K DL K L + + A G + ++E SAL
Sbjct: 104 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 161
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 162 ---TQRGLKTVFDEAIRAV 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 44 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H + I+++G K DL K L + + A G + ++E SAL
Sbjct: 104 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 161
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 162 ---TQRGLKTVFDEAIRAV 177
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAGQE Y + Y L+ + + P +FENV ++W E+R
Sbjct: 43 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H + I+++G K DL K L + + A G + ++E SAL
Sbjct: 103 HHC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAG E Y + Y L+ + + P +FENV ++W E+R
Sbjct: 46 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 105
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 106 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 163
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 164 ---TQRGLKTVFDEAIRAV 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+G+ + +WDTAG E Y + Y L+ + + P +FENV ++W E+R
Sbjct: 70 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALE 116
H N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 130 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL- 187
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 188 ---TQRGLKTVFDEAIRAV 203
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+ + + +WDTAGQE Y + Y L+ + + P ++ENV ++W E+R
Sbjct: 43 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 102
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
H S +I ++G K DL K L + + A E + + ++E SAL
Sbjct: 103 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 160
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 161 ---TQRGLKTVFDEAIRAV 176
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+ + + +WDTAGQE Y + Y L+ + + P ++ENV ++W E+R
Sbjct: 49 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 108
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
H S +I ++G K DL K L + + A E + + ++E SAL
Sbjct: 109 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 166
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 167 ---TQRGLKTVFDEAIRAV 182
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADS 74
+++ + DTAG + Y+ S Y+ G A+LV+DV+ +FE+ W LK R +
Sbjct: 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131
Query: 75 NIVIMMIGNKTDLKHLR-AVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQTILSEIY 132
+ +++ NKTDL R V + AQ +A L F + SA + + F +I + Y
Sbjct: 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
Query: 133 R 133
R
Sbjct: 192 R 192
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELR 69
+ V+ + + +WDTAGQE Y + Y L+ + + P ++ENV ++W E+R
Sbjct: 50 NVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR 109
Query: 70 DHADSNIVIMMIGNKTDL------------KHLRAVATEDAQSYA-EREGLSFIETSALE 116
H S +I ++G K DL K L + + A E + + ++E SAL
Sbjct: 110 HHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSAL- 167
Query: 117 AINVEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 168 ---TQRGLKTVFDEAIRAV 183
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 38/158 (24%)
Query: 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGA-------------------LLVYD 51
+ V+G+ + +WDTAGQE Y + Y +G L+ +
Sbjct: 45 NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFS 104
Query: 52 VTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDL------------KHLRAVATEDA 98
+ P +FENV ++W E+R H N I+++G K DL K L +
Sbjct: 105 LVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 163
Query: 99 QSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII 135
+ A+ G + ++E SAL ++ +T+ E R +
Sbjct: 164 LAMAKEIGAVKYLECSAL----TQRGLKTVFDEAIRAV 197
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
V G+ ++DTAGQE Y + Y L+ + V P +F+NV W+ EL+++A
Sbjct: 61 VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 120
Query: 73 DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSALEAIN 119
N+ ++IG + DL+ + + E Q A+ G ++E SAL
Sbjct: 121 -PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL---- 175
Query: 120 VEKAFQTILSE 130
+K +T+ E
Sbjct: 176 TQKGLKTVFDE 186
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-----DSNI 76
+I DTAG E++ ++ Y + G +LVY + +F+++ K +RD +
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI----KPMRDQIIRVKRYEKV 109
Query: 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
++++GNK DL+ R V++ + ++ AE G F+ETSA V++ F I+ ++
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80
+WDTAGQE Y + Y + LL + V T+F+N+S +W E++ + D+ + +
Sbjct: 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-L 132
Query: 81 IGNKTDLKHLRA--VATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK 137
+G K DL+ + V ++ ++ G +++IE S++ I + + F+ + I+
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF----- 187
Query: 138 KSLSSGEPAP 147
S +P P
Sbjct: 188 ----SNKPVP 193
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
V+G+ + +WDTAG E Y + Y L+ + + P +F +V ++W E+R H
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73 DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
V+G+ + +WDTAG E Y + Y L+ + + P +F +V ++W E+R H
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73 DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHA 72
V+G+ + +WDTAG E Y + Y L+ + + P +F +V ++W E+R H
Sbjct: 198 VDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 73 DSNIVIMMIGNKTDL------------KHLRAVATEDAQSYAEREG-LSFIETSALEAIN 119
N I+++G K DL K L + + A+ G + ++E SAL
Sbjct: 258 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL---- 312
Query: 120 VEKAFQTILSEIYRII 135
++ +T+ E R +
Sbjct: 313 TQRGLKTVFDEAIRAV 328
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80
+WDTAGQE Y + Y + LL + V T+F+N+S +W E++ + D+ + +
Sbjct: 73 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-L 131
Query: 81 IGNKTDLKHLRA--VATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY 132
+G K DL+ + V ++ ++ G +++IE S++ I + + F+ + I+
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
+ E + ++ +WDT+G Y + Y + LL +D+++P T ++ + +W E+ D
Sbjct: 52 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 111
Query: 71 HADSNIVIMMIGNKTDLK 88
+ S V ++IG KTDL+
Sbjct: 112 YCPSTRV-LLIGCKTDLR 128
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
+ E + ++ +WDT+G Y + Y + LL +D+++P T ++ + +W E+ D
Sbjct: 51 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 110
Query: 71 HADSNIVIMMIGNKTDLK 88
+ S V ++IG KTDL+
Sbjct: 111 YCPSTRV-LLIGCKTDLR 127
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRD 70
+ E + ++ +WDT+G Y + Y + LL +D+++P T ++ + +W E+ D
Sbjct: 68 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127
Query: 71 HADSNIVIMMIGNKTDLK 88
+ S V ++IG KTDL+
Sbjct: 128 YCPSTRV-LLIGCKTDLR 144
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS--NIVIM 79
QI DT G ++ A+ +LV+ VT + E + K + S +I +M
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
++GNK D R V T +AQ+ A+ +F+ETSA NV++ FQ +L+
Sbjct: 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
F+++ + I+ +WDT+G Y + Y + L+ +D+++P T ++V +W E+++
Sbjct: 64 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 123
Query: 71 HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
N ++++G K+DL+ H + + D + ++ ++IE SAL++
Sbjct: 124 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 182
Query: 118 IN 119
N
Sbjct: 183 EN 184
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
F+++ + I+ +WDT+G Y + Y + L+ +D+++P T ++V +W E+++
Sbjct: 69 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128
Query: 71 HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
N ++++G K+DL+ H + + D + ++ ++IE SAL++
Sbjct: 129 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 187
Query: 118 IN 119
N
Sbjct: 188 EN 189
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRD 70
F+++ + I+ +WDT+G Y + Y + L+ +D+++P T ++V +W E+++
Sbjct: 48 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107
Query: 71 HADSNIVIMMIGNKTDLK-----------HLRAVATEDAQSYAERE--GLSFIETSALEA 117
N ++++G K+DL+ H + + D + ++ ++IE SAL++
Sbjct: 108 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166
Query: 118 IN 119
N
Sbjct: 167 EN 168
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 22 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN---VSRWLKELRDHADSNIVI 78
QI DT G ++ A+ +LVY +T + E + + E++ +S I I
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPI 112
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129
M++GNK D R V + +A++ A +F+ETSA NV++ FQ +L+
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+G ++D Q+ R + ++VY VT +FE S +LR
Sbjct: 49 VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 108
Query: 74 SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
++ V I+++GNK+DL R V+ ++ ++ A FIETSA NV+ F+ ++ +I
Sbjct: 109 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+VY +T +FE S +LR + +I I+++GNK+DL R V+ + ++ A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
FIETSA NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+G ++D Q+ R + ++VY VT +FE S +LR
Sbjct: 44 VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 103
Query: 74 SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
++ V I+++GNK+DL R V+ ++ ++ A FIETSA NV+ F+ ++ +I
Sbjct: 104 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+G ++D Q+ R + ++VY VT +FE S +LR
Sbjct: 49 VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ 108
Query: 74 SNIV-IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131
++ V I+++GNK+DL R V+ ++ ++ A FIETSA NV+ F+ ++ +I
Sbjct: 109 TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+VY +T +FE S +LR + +I I+++GNK+DL R V+ + ++ A
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
FIETSA NV++ F+ I+ ++
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 174 LAALEPPEPKKS 185
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 174 LAALEPPEPKKS 185
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 120
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 181 LAALEPPEPKKS 192
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 115
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 176 LAALEPPEPKKS 187
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 56 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 114
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 115 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 175 LAALEPPEPKKS 186
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 116
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 177 LAALEPPEPKKS 188
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 174 LAALEPPEPKKS 185
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 120
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 181 LAALEPPEPKKS 192
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 116
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 177 LAALEPPEPKKS 188
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 174 LAALEPPEPKKS 185
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+VY +T +FE S +LR + +I I+++GNK+DL R V+ + ++ A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
FIETSA NV++ F+ I+ ++
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 174 LAALEPPEPKKS 185
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+VY +T +FE S +LR + +I I+++GNK+DL R V+ + ++ A
Sbjct: 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
FIETSA NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 41 RGALGALLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQ 99
+G ++VY + +FE+ S +LR H ++ I+++GNK DL R V+ E+ +
Sbjct: 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135
Query: 100 SYAEREGLSFIETSALEAINVEKAFQ 125
+ A FIETSA NV + F+
Sbjct: 136 ACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 65 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 123
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 124 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHA 72
+ G ++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H
Sbjct: 50 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 109
Query: 73 DSNIVIMMIGNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAIN 119
+++G + DL+ + + E A+ A + + + ++E SAL
Sbjct: 110 -PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 168
Query: 120 VEKAF 124
++ F
Sbjct: 169 LKNVF 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 115
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLKH------------LRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAG E Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 59 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 117
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF-QTI 127
G + DL+ + + E A+ A + + + ++E SAL ++ F + I
Sbjct: 118 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
Query: 128 LSEIYRIISKKS 139
L+ + KKS
Sbjct: 178 LAALEPPEPKKS 189
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 25 DTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGN 83
DTAGQE Y + Y L+ + V P++FENV +W+ E+ H +++G
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGT 115
Query: 84 KTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
+ DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMI 81
++DTAG E Y + Y L+ + V P++FENV +W+ E+ H +++
Sbjct: 55 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 82 GNKTDLK------------HLRAVATEDAQSYA-EREGLSFIETSALEAINVEKAF 124
G + DL+ + + E A+ A + + + ++E SAL ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE + +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 356 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 416 INDREMRDAIILIFANKQDL 435
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+V+ VT +F V L LR ++ ++++GNK+DL R V+ E+ + A
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
IETSA N + F+ + +I
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+V+ VT +F V L LR ++ ++++GNK+DL R V+ E+ + A
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
IETSA N + F+ + +I
Sbjct: 150 SCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 47 LLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105
L+V+ VT +F V L LR ++ ++++GNK+DL R V+ E+ + A
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 106 GLSFIETSALEAINVEKAFQTILSEI 131
IETSA N + F+ + +I
Sbjct: 140 SCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE + +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 94 INDREXRDAIILIFANKQDL 113
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK------E 67
VE + I +WD GQ+R R + Y++ G + V D + V+ L+ E
Sbjct: 56 VEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE 115
Query: 68 LRDHADSNIVIMMIGNKTDLKHLRAVA 94
LRD V+++ NK DL + A++
Sbjct: 116 LRDA-----VLLLFANKQDLPNAMAIS 137
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNI 76
+ +IWD GQ R+R++ Y RG + + D E L L D I
Sbjct: 66 NVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGI 125
Query: 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111
++++GNK DL + D + E+ LS I+
Sbjct: 126 PVLVLGNKRDLPN-----ALDEKQLIEKMNLSAIQ 155
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 46 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 105
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 106 INDREMRDAIILIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE + +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 47 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 107 INDREMRDAIILIFANKQDL 126
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNI 76
+ ++WD GQ R+R++ Y RG + + D E L L D I
Sbjct: 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 125
Query: 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111
++++GNK DL D + E+ LS I+
Sbjct: 126 PVLVLGNKRDLP-----GALDEKELIEKMNLSAIQ 155
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 94 INDREMRDAIILIFANKQDL 113
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + I +WD GQ+R R++ YYR G + V D + ++ + + +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDE 115
Query: 74 -SNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETS 113
N V ++ NK DL + A TE ++ R FI+++
Sbjct: 116 LRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQST 158
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD GQ++ R + YY G G + V D + + L
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 94 INDREMRDAIILIFANKQDL 113
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
VE R I +WD GQ++ R + YY G + V D ++ L + + +
Sbjct: 56 VEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEE 115
Query: 74 -SNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETS 113
+ +I++ NK DL + + A TE RE FI+++
Sbjct: 116 LKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQST 158
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNI 76
+ ++WD GQ R+R++ Y RG + + D E L L D I
Sbjct: 75 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 134
Query: 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111
++++GNK DL D + E+ LS I+
Sbjct: 135 PVLVLGNKRDLP-----GALDEKELIEKMNLSAIQ 164
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + + ++ DTA + R Y A L+VY V +F++ S +L+ L HA
Sbjct: 64 VDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 74 S---NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQTILS 129
+I +++GNK D+ R V + + A R G F E SA L+ +V+ F +
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
Query: 130 EIYR 133
E R
Sbjct: 183 EARR 186
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + I +WD GQ+R R++ YYR G + V D + ++ + + +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 115
Query: 74 -SNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETS 113
N ++ NK DL + A TE ++ R FI+ +
Sbjct: 116 LRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 158
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + I +WD GQ+R R++ YYR G + V D + ++ + + +
Sbjct: 39 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDE 98
Query: 74 -SNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETS 113
N ++ NK DL + A TE ++ R FI+ +
Sbjct: 99 LRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQAT 141
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD G ++ R + YY G G + V D + + L
Sbjct: 47 FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 107 INDREMRDAIILIFANKQDL 126
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD G ++ R + YY G G + V D + + L
Sbjct: 36 FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 95
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 96 INDREMRDAIILIFANKQDL 115
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE- 67
F VE T +K +WD G ++ R + YY G G + V D + + L
Sbjct: 37 FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 96
Query: 68 LRDHADSNIVIMMIGNKTDL 87
+ D + +I++ NK DL
Sbjct: 97 INDREMRDAIILIFANKQDL 116
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT-KPTTFENVSRWLKELRDHA 72
VE + I +WD GQ++ R + YY+ + V D + E +K L +
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDE 115
Query: 73 DSNIVIMMIGNKTDLKHLRAVA 94
N ++++ NK DL +++
Sbjct: 116 MRNAILLVFANKHDLPQAMSIS 137
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
VE + I +WD GQ++ R + Y++ G + V D E + R L E
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 264 LRD-----AVLLVFANKQDL 278
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT-KPTTFENVSRWLKELRDHA 72
VE + I +WD GQ++ R + Y++ G + V D + E+ K L++
Sbjct: 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127
Query: 73 DSNIVIMMIGNKTDLKHLRAVA 94
+ V+++ NK D+ + V+
Sbjct: 128 LRDAVLLVFANKQDMPNAMPVS 149
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
VE + I +WD GQ++ R + Y++ G + V D E + R L E
Sbjct: 55 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 114
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 115 LRD-----AVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
VE + I +WD GQ++ R + Y++ G + V D E + R L E
Sbjct: 56 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 115
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 116 LRD-----AVLLVFANKQDL 130
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIM 79
++D +GQ RYR + YY+ + V D + L L +H D I I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 80 MIGNKTDLK 88
NK DL+
Sbjct: 131 FFANKMDLR 139
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
VE + I +WD GQ++ R + Y++ G + V D E + R L E
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 99 LRD-----AVLLVFANKQDL 113
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWLK--E 67
VE + I +WD GQ++ R + Y++ G + V D + + R L E
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 118
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 119 LRD-----AVLLVFANKQDL 133
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHA 72
+E R K IWD GQ+ R+ Y+ G + V D ++ R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 73 DSNIVIMMIGNKTDL 87
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHA 72
+E R K IWD GQ+ R+ Y+ G + V D ++ R L+ L +
Sbjct: 55 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114
Query: 73 DSNIVIMMIGNKTDL 87
+ +++ NK DL
Sbjct: 115 LAGATLLIFANKQDL 129
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHA 72
+E R K IWD GQ+ R+ Y+ G + V D ++ R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 73 DSNIVIMMIGNKTDL 87
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHA 72
+E R K IWD GQ+ R+ Y+ G + V D ++ R L+ L +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEER 116
Query: 73 DSNIVIMMIGNKTDL 87
+ +++ NK DL
Sbjct: 117 LAGATLLIFANKQDL 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV 77
I +WD GQ+R R++ YY G + V D + ++ + + + N
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 78 IMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETSA 114
++ NK DL + A TE ++ R FI+ +
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATC 159
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRD 70
V+G+T I + AG A + + A + V+ + +F+ VSR L LR
Sbjct: 49 VDGQTHLVLIREEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG 103
Query: 71 HADSNIVIMMIGNKTDLKHLRAVATEDAQSYA---EREGLSFIETSALEAINVEKAFQTI 127
+ + ++G + + DA++ A + + S+ ET A +NV++ FQ +
Sbjct: 104 EGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 163
Query: 128 LSEIYRIISKKSL 140
++ + ++ L
Sbjct: 164 AQKVVTLRKQQQL 176
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF----ENVSRWL--KE 67
VE + I +WD G ++ R + Y++ G + V D E + R L E
Sbjct: 41 VEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 100
Query: 68 LRDHADSNIVIMMIGNKTDL 87
LRD V+++ NK DL
Sbjct: 101 LRD-----AVLLVFANKQDL 115
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 47 LLVYDVTKPTTFENVSRW---LKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQS--- 100
+ V+ + +F+ VSR L LR + + ++G + + DA++
Sbjct: 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL 136
Query: 101 YAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL 140
A+ + S+ ET A +NV++ FQ + ++ + ++ L
Sbjct: 137 XADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS 74
+G T K + DT G + S GALL+ D ++ + V+ + K + +
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV----EQ 124
Query: 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS---FIETSALEAINVEKAFQTILSEI 131
++VI+ + NK DL A + E GL I SA E I +E+ + I++ I
Sbjct: 125 DLVIIPVINKIDLPS--ADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS 74
+G T K + DT G + S GALL+ D ++ + V+ + K + +
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV----EQ 124
Query: 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS---FIETSALEAINVEKAFQTILSEI 131
++VI+ + NK DL A + E GL I SA E I +E+ + I++ I
Sbjct: 125 DLVIIPVINKIDLPS--ADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMI 81
+WD GQE R+ + YY ++V D T L ++ H D +++
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128
Query: 82 GNKTDLKHLRAVA 94
NK D+K VA
Sbjct: 129 ANKQDVKECMTVA 141
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMI 81
+WD GQE R+ + YY ++V D T L ++ H D +++
Sbjct: 70 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 129
Query: 82 GNKTDLKHLRAVA 94
NK D+K VA
Sbjct: 130 ANKQDVKECMTVA 142
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 3 QPRLGKLCDFQVEG---RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE 59
+P +G F VE + +K +WD GQ R YY + V D T
Sbjct: 47 KPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102
Query: 60 NVSRWL------KELRDHADSNIVIMMIGNKTD 86
S+ L +EL+D A +++ NK D
Sbjct: 103 TASKELHLMLQEEELQDAA-----LLVFANKQD 130
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMI 81
+WD GQE R+ + YY ++V D T L ++ H D +++
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 82 GNKTDLKHLRAVA 94
NK D+K VA
Sbjct: 124 ANKQDVKECMTVA 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMI 81
+WD GQE R+ + YY ++V D T L ++ H D +++
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 82 GNKTDLKHLRAVA 94
NK D+K VA
Sbjct: 124 ANKQDVKECMTVA 136
>pdb|4AXG|C Chain C, Structure Of Eif4e-Cup Complex
pdb|4AXG|D Chain D, Structure Of Eif4e-Cup Complex
Length = 130
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYR 33
PR+ D ++EGR + IW T+ R+R
Sbjct: 59 PRIATCDDIELEGRLRRMNIWRTSDGTRFR 88
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 23 IWDTAGQERYRAITSAYYRGALGALLVYD--------VTKPTTFENVSRWLKELRDHADS 74
+WD GQE R+ + YY +LV D +TK + ++ ++LR A
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-- 119
Query: 75 NIVIMMIGNKTDLK 88
+++ NK D+K
Sbjct: 120 ---VLIFANKQDMK 130
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA 72
+V+G + ++ GQ Y A RG G + V D + P + ++ +R++
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAESMRNMRENL 126
Query: 73 --------DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE--K 122
D IVI + NK DL A+ E ++ + EG + LEA+ E
Sbjct: 127 AEYGLTLDDVPIVIQV--NKRDLPD--ALPVEMVRAVVDPEG----KFPVLEAVATEGKG 178
Query: 123 AFQTILSEIYRII 135
F+T L E+ R++
Sbjct: 179 VFET-LKEVSRLV 190
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 GALLVYDVTKPTT--FENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVATEDAQSY 101
G LL DV++ F++ +++ L + A + I+++ K D R + DA ++
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTF 222
Query: 102 A-EREGLSFIETSALEAINVEKAFQTILSEI 131
A ++ L +ETSA +NV+ AF T++ I
Sbjct: 223 ALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 24 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69
W+ Q+ Y ++Y AL A YD T P V RWL E R
Sbjct: 1219 WEEPNQKLYNVEATSYALLALLARKDYDTTPP-----VVRWLNEQR 1259
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + K +WD GQ + R +Y+ + V D FE + L EL +
Sbjct: 56 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 115
Query: 74 SNIV-IMMIGNKTDL 87
+ V +++ NK DL
Sbjct: 116 LSCVPVLIFANKQDL 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + K +WD GQ + R +Y+ + V D FE + L EL +
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 114
Query: 74 SNIV-IMMIGNKTDL 87
+ V +++ NK DL
Sbjct: 115 LSCVPVLIFANKQDL 129
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 73
V+ + K +WD GQ + R +Y+ + V D FE + L EL +
Sbjct: 43 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 102
Query: 74 SNIV-IMMIGNKTDL 87
+ V +++ NK DL
Sbjct: 103 LSCVPVLIFANKQDL 117
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 12 FQVEGRT---IKAQIWDTAGQERYRAITSAYYRGALGALLVYD 51
F VE T +K Q+WD GQ R YY + V D
Sbjct: 36 FNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVD 78
>pdb|3RNV|A Chain A, Structure Of The Autocatalytic Cysteine Protease Domain Of
Potyvirus Helper-Component Proteinase
Length = 158
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123
++IGN D K++ E+ + Y +EG +I +NV+++
Sbjct: 15 LVIGNSGDPKYIDLPEIEENKMYIAKEGYCYINIFLAMLVNVKES 59
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 24 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR-DHADSNIVIMMIG 82
+D G E+ R + Y G + + D + L L D SN+ I+++G
Sbjct: 84 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILG 143
Query: 83 NKTD 86
NK D
Sbjct: 144 NKID 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,680,361
Number of Sequences: 62578
Number of extensions: 168769
Number of successful extensions: 1041
Number of sequences better than 100.0: 350
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 353
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)