Query 043745
Match_columns 174
No_of_seqs 120 out of 1400
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.6E-36 7.7E-41 212.5 17.9 162 4-172 40-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 3E-35 6.4E-40 207.1 15.4 137 3-139 35-174 (200)
3 KOG0078 GTP-binding protein SE 100.0 1.2E-33 2.7E-38 202.1 17.4 132 8-139 50-181 (207)
4 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.4E-34 1.6E-38 202.6 15.5 140 4-143 45-187 (222)
5 KOG0098 GTPase Rab2, small G p 100.0 1.4E-33 3.1E-38 197.5 16.2 139 8-146 44-182 (216)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.4E-32 3E-37 193.9 15.9 134 3-136 52-189 (221)
7 KOG0091 GTPase Rab39, small G 100.0 4.1E-32 9E-37 186.5 14.8 168 3-172 38-213 (213)
8 KOG0088 GTPase Rab21, small G 100.0 1.4E-31 2.9E-36 183.2 13.0 163 9-172 52-217 (218)
9 KOG0079 GTP-binding protein H- 100.0 1.9E-31 4.1E-36 180.5 13.1 153 8-171 46-198 (198)
10 cd04120 Rab12 Rab12 subfamily. 100.0 3.7E-30 8E-35 188.8 20.2 132 4-135 31-166 (202)
11 KOG0080 GTPase Rab18, small G 100.0 4.3E-31 9.3E-36 181.0 13.6 130 5-134 43-176 (209)
12 KOG0093 GTPase Rab3, small G p 100.0 1.5E-30 3.3E-35 175.9 13.2 135 5-139 53-190 (193)
13 PTZ00099 rab6; Provisional 100.0 2.7E-29 5.8E-34 180.7 18.6 133 3-135 10-145 (176)
14 cd04121 Rab40 Rab40 subfamily. 100.0 3.2E-29 7E-34 182.1 19.3 132 4-136 37-171 (189)
15 PLN03110 Rab GTPase; Provision 100.0 1.9E-28 4E-33 181.8 21.2 167 4-171 43-214 (216)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.2E-28 4.8E-33 182.5 20.1 133 4-137 44-193 (232)
17 KOG0394 Ras-related GTPase [Ge 100.0 3.8E-29 8.3E-34 174.9 14.7 134 4-137 40-183 (210)
18 cd04126 Rab20 Rab20 subfamily. 100.0 9.4E-29 2E-33 183.4 17.7 146 17-171 42-220 (220)
19 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.2E-28 1.3E-32 177.0 19.0 162 4-171 31-201 (201)
20 cd04110 Rab35 Rab35 subfamily. 100.0 1.5E-27 3.3E-32 174.7 20.4 160 4-171 37-199 (199)
21 cd04144 Ras2 Ras2 subfamily. 100.0 1.2E-27 2.6E-32 174.0 18.8 128 10-137 38-168 (190)
22 cd04111 Rab39 Rab39 subfamily. 100.0 3.8E-27 8.3E-32 174.1 21.0 162 11-172 43-211 (211)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.6E-28 1.7E-32 174.0 16.8 129 3-132 35-180 (182)
24 cd01875 RhoG RhoG subfamily. 100.0 1E-27 2.2E-32 174.6 17.4 130 3-133 33-178 (191)
25 cd04133 Rop_like Rop subfamily 100.0 6.6E-28 1.4E-32 173.4 15.7 127 4-131 32-172 (176)
26 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.4E-29 1.6E-33 165.4 9.6 131 4-134 29-162 (192)
27 KOG0095 GTPase Rab30, small G 100.0 2.3E-28 4.9E-33 166.0 11.9 137 4-140 38-177 (213)
28 cd04125 RabA_like RabA-like su 100.0 5.6E-27 1.2E-31 170.1 19.8 155 3-173 30-187 (188)
29 KOG0097 GTPase Rab14, small G 100.0 3.1E-27 6.8E-32 159.2 16.4 136 8-143 49-184 (215)
30 cd04131 Rnd Rnd subfamily. Th 100.0 3.4E-27 7.3E-32 170.1 16.3 128 4-132 32-176 (178)
31 PLN03108 Rab family protein; P 100.0 2.7E-26 6E-31 169.4 21.4 136 4-139 37-175 (210)
32 KOG0086 GTPase Rab4, small G p 100.0 2.9E-27 6.4E-32 161.1 14.6 133 8-140 47-179 (214)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.1E-27 1.8E-31 167.2 17.6 130 4-133 33-165 (172)
34 cd04112 Rab26 Rab26 subfamily. 100.0 2E-26 4.3E-31 167.8 19.2 125 11-135 42-166 (191)
35 cd04122 Rab14 Rab14 subfamily. 100.0 1.6E-26 3.5E-31 164.4 18.3 124 10-133 42-165 (166)
36 KOG0081 GTPase Rab27, small G 100.0 2.4E-27 5.3E-32 162.4 13.0 124 16-139 64-188 (219)
37 smart00176 RAN Ran (Ras-relate 99.9 3.1E-26 6.8E-31 167.8 18.2 129 3-134 25-156 (200)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.9E-26 1.1E-30 169.0 19.2 131 4-135 32-179 (222)
39 PTZ00369 Ras-like protein; Pro 99.9 5.1E-26 1.1E-30 165.3 18.1 133 4-136 36-171 (189)
40 cd04109 Rab28 Rab28 subfamily. 99.9 8E-26 1.7E-30 167.5 18.3 131 4-134 31-168 (215)
41 cd04117 Rab15 Rab15 subfamily. 99.9 6.6E-26 1.4E-30 160.7 17.1 127 4-130 31-160 (161)
42 PF00071 Ras: Ras family; Int 99.9 9.8E-26 2.1E-30 159.5 17.8 129 4-132 30-161 (162)
43 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.7E-26 8E-31 164.3 15.8 127 4-131 32-174 (175)
44 cd01867 Rab8_Rab10_Rab13_like 99.9 1.4E-25 3E-30 159.8 17.9 130 4-133 34-166 (167)
45 cd01865 Rab3 Rab3 subfamily. 99.9 1.4E-25 2.9E-30 159.6 17.7 123 11-133 42-164 (165)
46 cd04134 Rho3 Rho3 subfamily. 99.9 1E-25 2.2E-30 163.8 17.0 129 4-133 31-175 (189)
47 cd04127 Rab27A Rab27a subfamil 99.9 1.3E-25 2.7E-30 161.6 17.3 119 16-134 60-179 (180)
48 cd04118 Rab24 Rab24 subfamily. 99.9 4.7E-25 1E-29 160.5 19.9 134 4-138 32-172 (193)
49 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.4E-25 3.1E-30 162.2 17.0 130 3-133 30-167 (182)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.4E-25 5.2E-30 158.2 17.7 125 9-133 41-165 (166)
51 cd04175 Rap1 Rap1 subgroup. T 99.9 1.6E-25 3.4E-30 158.9 16.7 129 4-132 32-163 (164)
52 PLN03118 Rab family protein; P 99.9 7.3E-25 1.6E-29 161.9 20.7 125 10-134 53-179 (211)
53 cd01866 Rab2 Rab2 subfamily. 99.9 2.2E-25 4.8E-30 159.0 17.2 124 10-133 44-167 (168)
54 cd04136 Rap_like Rap-like subf 99.9 1.9E-25 4.2E-30 157.9 16.7 122 10-131 40-162 (163)
55 cd01873 RhoBTB RhoBTB subfamil 99.9 1.3E-25 2.9E-30 163.9 15.5 115 13-130 60-194 (195)
56 cd04132 Rho4_like Rho4-like su 99.9 5.2E-25 1.1E-29 159.5 17.8 126 11-137 40-172 (187)
57 cd01871 Rac1_like Rac1-like su 99.9 2.5E-25 5.4E-30 159.8 16.0 126 4-130 32-173 (174)
58 cd04113 Rab4 Rab4 subfamily. 99.9 2.7E-25 5.9E-30 157.1 15.9 121 10-130 40-160 (161)
59 smart00174 RHO Rho (Ras homolo 99.9 1.9E-25 4.1E-30 159.8 14.4 121 11-132 38-172 (174)
60 PLN03071 GTP-binding nuclear p 99.9 5.3E-25 1.2E-29 163.5 16.9 129 3-134 43-174 (219)
61 smart00173 RAS Ras subfamily o 99.9 5.4E-25 1.2E-29 155.9 16.3 123 10-132 39-162 (164)
62 cd04119 RJL RJL (RabJ-Like) su 99.9 1.1E-24 2.3E-29 154.5 17.5 124 9-132 39-167 (168)
63 cd04176 Rap2 Rap2 subgroup. T 99.9 7.2E-25 1.6E-29 155.3 16.5 122 10-131 40-162 (163)
64 smart00175 RAB Rab subfamily o 99.9 9.7E-25 2.1E-29 154.4 16.5 123 11-133 41-163 (164)
65 cd01868 Rab11_like Rab11-like. 99.9 1.9E-24 4.1E-29 153.4 18.0 128 4-131 34-164 (165)
66 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.7E-24 3.7E-29 154.9 17.8 130 4-133 31-166 (170)
67 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3.2E-24 7E-29 151.8 17.4 122 10-131 41-163 (164)
68 cd01864 Rab19 Rab19 subfamily. 99.9 3.3E-24 7.1E-29 152.3 17.3 122 9-130 42-164 (165)
69 cd04106 Rab23_lke Rab23-like s 99.9 4.3E-24 9.3E-29 150.9 16.8 119 11-130 41-161 (162)
70 cd04124 RabL2 RabL2 subfamily. 99.9 2.5E-24 5.5E-29 152.6 15.6 120 11-134 41-160 (161)
71 cd01861 Rab6 Rab6 subfamily. 99.9 3.7E-24 8.1E-29 151.1 16.1 120 11-130 41-160 (161)
72 cd04140 ARHI_like ARHI subfami 99.9 5.2E-24 1.1E-28 151.4 16.9 120 11-130 41-163 (165)
73 KOG0395 Ras-related GTPase [Ge 99.9 1.3E-23 2.7E-28 153.2 18.0 133 3-135 33-168 (196)
74 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.2E-23 2.6E-28 148.2 17.3 121 10-131 40-161 (162)
75 cd04116 Rab9 Rab9 subfamily. 99.9 1E-23 2.2E-28 150.4 16.8 120 10-130 45-169 (170)
76 cd00877 Ran Ran (Ras-related n 99.9 1.3E-23 2.8E-28 149.7 16.6 120 11-133 41-160 (166)
77 cd04103 Centaurin_gamma Centau 99.9 1.1E-23 2.3E-28 149.1 15.6 118 8-130 36-157 (158)
78 cd04123 Rab21 Rab21 subfamily. 99.9 1.7E-23 3.8E-28 147.4 16.7 121 11-131 41-161 (162)
79 KOG0393 Ras-related small GTPa 99.9 2.2E-24 4.8E-29 154.9 12.1 131 4-135 35-182 (198)
80 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.1E-23 4.6E-28 149.0 17.1 122 10-131 42-168 (170)
81 cd01860 Rab5_related Rab5-rela 99.9 3.7E-23 8E-28 146.3 18.0 129 3-131 31-162 (163)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 3E-23 6.5E-28 147.9 17.1 123 10-132 40-164 (168)
83 cd04143 Rhes_like Rhes_like su 99.9 3.1E-23 6.8E-28 156.5 17.5 128 4-131 31-170 (247)
84 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.9E-23 1.1E-27 145.9 17.2 120 11-131 43-163 (164)
85 cd04130 Wrch_1 Wrch-1 subfamil 99.9 2.5E-23 5.5E-28 149.0 15.8 119 10-129 39-171 (173)
86 cd04146 RERG_RasL11_like RERG/ 99.9 3.6E-23 7.7E-28 147.0 16.2 123 10-132 38-164 (165)
87 cd04139 RalA_RalB RalA/RalB su 99.9 8.1E-23 1.7E-27 144.4 16.8 122 11-132 40-162 (164)
88 cd04142 RRP22 RRP22 subfamily. 99.9 8.1E-23 1.8E-27 149.6 16.4 125 11-135 41-177 (198)
89 cd04148 RGK RGK subfamily. Th 99.9 1.5E-22 3.3E-27 150.6 17.8 130 8-139 39-170 (221)
90 PLN00223 ADP-ribosylation fact 99.9 6.3E-23 1.4E-27 148.2 14.2 124 4-133 47-179 (181)
91 cd04114 Rab30 Rab30 subfamily. 99.9 4.2E-22 9.1E-27 141.7 17.4 121 11-131 48-168 (169)
92 cd04135 Tc10 TC10 subfamily. 99.9 1.8E-22 4E-27 144.3 15.3 120 11-131 40-173 (174)
93 cd04129 Rho2 Rho2 subfamily. 99.9 2.8E-22 6E-27 145.5 16.4 125 10-135 40-176 (187)
94 cd01863 Rab18 Rab18 subfamily. 99.9 5E-22 1.1E-26 140.3 17.2 119 11-130 41-160 (161)
95 cd01862 Rab7 Rab7 subfamily. 99.9 1E-21 2.2E-26 140.0 18.0 125 10-134 40-169 (172)
96 cd00154 Rab Rab family. Rab G 99.9 3.9E-22 8.4E-27 139.5 15.5 118 11-128 41-158 (159)
97 cd00876 Ras Ras family. The R 99.9 5.3E-22 1.2E-26 139.5 15.7 120 11-130 39-159 (160)
98 cd04149 Arf6 Arf6 subfamily. 99.9 1.6E-22 3.4E-27 144.5 13.0 123 4-129 39-167 (168)
99 cd01892 Miro2 Miro2 subfamily. 99.9 3.5E-22 7.7E-27 142.7 14.4 127 4-132 36-166 (169)
100 cd01870 RhoA_like RhoA-like su 99.9 8.5E-22 1.8E-26 141.0 16.4 127 4-131 32-174 (175)
101 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.4E-23 1.4E-27 145.9 10.1 124 4-129 30-163 (164)
102 cd04147 Ras_dva Ras-dva subfam 99.9 3.2E-21 6.8E-26 141.1 18.5 123 10-132 38-163 (198)
103 cd04158 ARD1 ARD1 subfamily. 99.9 5.8E-22 1.3E-26 141.5 13.9 128 4-134 29-163 (169)
104 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.2E-22 2.6E-27 143.7 9.8 123 4-129 30-158 (159)
105 PTZ00133 ADP-ribosylation fact 99.9 1.2E-21 2.5E-26 141.7 14.6 129 4-135 47-181 (182)
106 smart00177 ARF ARF-like small 99.9 2.2E-22 4.7E-27 144.6 10.7 125 4-131 43-173 (175)
107 cd04137 RheB Rheb (Ras Homolog 99.9 8E-21 1.7E-25 136.7 18.5 127 9-135 39-166 (180)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.7E-21 1E-25 138.6 16.1 122 15-138 48-176 (183)
109 cd01893 Miro1 Miro1 subfamily. 99.9 2.2E-21 4.9E-26 138.0 13.9 121 12-133 40-165 (166)
110 cd00157 Rho Rho (Ras homology) 99.9 3.1E-21 6.6E-26 137.4 14.1 118 11-129 40-170 (171)
111 cd04154 Arl2 Arl2 subfamily. 99.9 6E-21 1.3E-25 136.7 14.3 122 4-129 44-172 (173)
112 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.3E-21 9.3E-26 136.8 11.8 125 4-129 29-166 (167)
113 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.6E-20 7.9E-25 135.8 16.5 114 4-117 31-175 (202)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1E-20 2.2E-25 135.7 12.5 110 18-129 58-173 (174)
115 cd04157 Arl6 Arl6 subfamily. 99.9 1.6E-20 3.4E-25 132.6 12.8 112 16-129 42-161 (162)
116 PF00025 Arf: ADP-ribosylation 99.8 8.9E-20 1.9E-24 131.1 15.2 124 4-131 44-175 (175)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.5E-20 5.4E-25 131.4 11.9 112 16-129 41-159 (160)
118 cd04151 Arl1 Arl1 subfamily. 99.8 1.5E-20 3.2E-25 132.6 10.2 114 14-129 38-157 (158)
119 KOG0070 GTP-binding ADP-ribosy 99.8 1.9E-20 4.2E-25 131.7 10.4 128 3-133 46-179 (181)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.8E-20 3.9E-25 132.0 10.0 110 18-129 42-157 (158)
121 PTZ00132 GTP-binding nuclear p 99.8 4.2E-19 9E-24 131.5 17.7 120 11-133 50-169 (215)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.8E-19 3.9E-24 127.9 14.4 110 18-129 49-166 (167)
123 KOG4252 GTP-binding protein [S 99.8 1.3E-21 2.8E-26 136.8 3.0 125 13-138 63-187 (246)
124 cd00879 Sar1 Sar1 subfamily. 99.8 2.2E-19 4.7E-24 130.3 14.8 123 4-130 49-189 (190)
125 PLN00023 GTP-binding protein; 99.8 1.4E-18 3.1E-23 134.0 17.3 143 3-145 51-244 (334)
126 KOG0073 GTP-binding ADP-ribosy 99.8 1E-18 2.2E-23 120.6 14.2 128 3-134 45-180 (185)
127 cd01890 LepA LepA subfamily. 99.8 6.2E-19 1.3E-23 126.6 13.9 111 15-131 63-176 (179)
128 smart00178 SAR Sar1p-like memb 99.8 1.2E-18 2.6E-23 126.2 14.7 111 18-130 60-183 (184)
129 KOG0071 GTP-binding ADP-ribosy 99.8 1.8E-18 4E-23 116.5 11.5 126 3-131 46-177 (180)
130 PRK12299 obgE GTPase CgtA; Rev 99.8 2.7E-18 5.8E-23 134.6 13.9 115 19-133 206-329 (335)
131 KOG0075 GTP-binding ADP-ribosy 99.8 9.7E-19 2.1E-23 118.7 9.6 123 4-132 51-182 (186)
132 cd01897 NOG NOG1 is a nucleola 99.8 3.6E-18 7.8E-23 121.3 12.1 112 17-131 45-167 (168)
133 cd04159 Arl10_like Arl10-like 99.8 1.1E-17 2.4E-22 116.9 12.6 110 18-129 43-158 (159)
134 cd01898 Obg Obg subfamily. Th 99.8 6E-18 1.3E-22 120.3 10.9 111 19-130 48-169 (170)
135 TIGR02528 EutP ethanolamine ut 99.8 5.7E-18 1.2E-22 117.3 9.0 98 22-128 38-141 (142)
136 cd04155 Arl3 Arl3 subfamily. 99.7 6.4E-17 1.4E-21 115.4 14.1 119 4-129 44-172 (173)
137 cd04171 SelB SelB subfamily. 99.7 4.1E-17 9E-22 115.1 11.9 106 18-129 50-163 (164)
138 KOG0076 GTP-binding ADP-ribosy 99.7 1.4E-17 3.1E-22 116.0 9.0 127 4-134 55-189 (197)
139 KOG3883 Ras family small GTPas 99.7 9E-17 1.9E-21 109.9 12.7 120 15-134 56-177 (198)
140 cd01879 FeoB Ferrous iron tran 99.7 9.4E-17 2E-21 112.6 12.8 111 11-130 37-155 (158)
141 TIGR02729 Obg_CgtA Obg family 99.7 9.7E-17 2.1E-21 125.6 13.7 112 19-131 205-328 (329)
142 cd01878 HflX HflX subfamily. 99.7 8.3E-17 1.8E-21 118.1 11.6 105 20-130 90-203 (204)
143 KOG1673 Ras GTPases [General f 99.7 1.4E-16 2.9E-21 109.3 11.4 123 11-134 61-188 (205)
144 PRK15467 ethanolamine utilizat 99.7 1.2E-16 2.5E-21 113.1 11.2 104 23-136 41-151 (158)
145 cd00882 Ras_like_GTPase Ras-li 99.7 8.3E-16 1.8E-20 105.8 15.0 116 13-128 39-156 (157)
146 cd01881 Obg_like The Obg-like 99.7 2.1E-16 4.5E-21 112.8 10.1 113 18-130 43-175 (176)
147 COG1100 GTPase SAR1 and relate 99.7 3.6E-15 7.7E-20 110.4 16.6 126 13-138 48-191 (219)
148 cd01891 TypA_BipA TypA (tyrosi 99.7 3.8E-16 8.1E-21 113.9 10.7 107 12-122 58-172 (194)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 7.4E-16 1.6E-20 109.2 11.5 111 18-132 49-166 (168)
150 PRK04213 GTP-binding protein; 99.7 8.6E-17 1.9E-21 117.7 6.9 106 20-132 53-192 (201)
151 TIGR01393 lepA GTP-binding pro 99.7 1.7E-15 3.7E-20 126.8 14.7 112 15-132 66-180 (595)
152 PRK12297 obgE GTPase CgtA; Rev 99.7 1.9E-15 4.1E-20 121.6 14.2 112 19-134 206-329 (424)
153 TIGR03156 GTP_HflX GTP-binding 99.7 2E-15 4.3E-20 119.2 13.6 105 19-130 237-350 (351)
154 TIGR00436 era GTP-binding prot 99.7 1.2E-15 2.5E-20 116.9 11.8 107 19-131 48-163 (270)
155 cd01894 EngA1 EngA1 subfamily. 99.7 1.5E-15 3.3E-20 106.2 11.2 103 19-130 45-156 (157)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.3E-15 2.9E-20 123.4 12.2 106 19-136 251-364 (442)
157 PRK03003 GTP-binding protein D 99.7 1.9E-15 4E-20 124.0 12.8 116 13-134 255-384 (472)
158 KOG0072 GTP-binding ADP-ribosy 99.7 7.5E-16 1.6E-20 104.4 8.6 130 3-133 47-180 (182)
159 TIGR00231 small_GTP small GTP- 99.6 1.1E-14 2.5E-19 101.1 14.5 115 12-127 43-159 (161)
160 PRK03003 GTP-binding protein D 99.6 1.2E-15 2.7E-20 125.0 11.0 106 19-133 86-200 (472)
161 TIGR00437 feoB ferrous iron tr 99.6 1.6E-15 3.5E-20 126.9 10.8 106 19-131 41-154 (591)
162 PRK15494 era GTPase Era; Provi 99.6 3.8E-15 8.3E-20 117.3 11.9 106 19-132 100-216 (339)
163 PRK12296 obgE GTPase CgtA; Rev 99.6 9.4E-15 2E-19 119.2 13.1 116 19-135 206-343 (500)
164 PRK05433 GTP-binding protein L 99.6 1.9E-14 4.1E-19 120.7 14.8 113 15-133 70-185 (600)
165 PRK05291 trmE tRNA modificatio 99.6 3.9E-15 8.4E-20 121.2 10.4 101 19-133 263-371 (449)
166 KOG0096 GTPase Ran/TC4/GSP1 (n 99.6 4.8E-16 1E-20 109.8 4.3 143 2-147 39-184 (216)
167 TIGR03594 GTPase_EngA ribosome 99.6 1E-14 2.2E-19 118.3 12.3 110 20-134 221-346 (429)
168 cd01888 eIF2_gamma eIF2-gamma 99.6 1.1E-14 2.4E-19 107.0 10.8 107 19-131 83-198 (203)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.6E-14 3.5E-19 100.9 10.9 101 18-131 48-156 (157)
170 PF02421 FeoB_N: Ferrous iron 99.6 5.4E-15 1.2E-19 103.7 8.1 102 19-127 47-156 (156)
171 PRK11058 GTPase HflX; Provisio 99.6 5.2E-14 1.1E-18 113.7 14.2 110 20-134 246-364 (426)
172 PRK12298 obgE GTPase CgtA; Rev 99.6 3.1E-14 6.7E-19 113.8 12.7 113 20-133 208-334 (390)
173 TIGR00487 IF-2 translation ini 99.6 3.1E-14 6.6E-19 118.9 12.9 103 20-129 136-247 (587)
174 TIGR00157 ribosome small subun 99.6 4.3E-14 9.3E-19 106.7 12.1 96 30-129 24-120 (245)
175 KOG0074 GTP-binding ADP-ribosy 99.6 7.4E-15 1.6E-19 99.3 6.9 120 4-129 47-176 (185)
176 CHL00189 infB translation init 99.6 7.3E-14 1.6E-18 118.7 13.9 110 15-131 291-409 (742)
177 PRK00093 GTP-binding protein D 99.6 7.9E-14 1.7E-18 113.4 13.3 100 19-129 49-159 (435)
178 KOG4423 GTP-binding protein-li 99.6 2.5E-15 5.5E-20 106.0 3.5 120 16-135 72-197 (229)
179 TIGR00475 selB selenocysteine- 99.5 8.4E-14 1.8E-18 116.5 12.8 108 19-133 50-167 (581)
180 COG2229 Predicted GTPase [Gene 99.5 1.9E-13 4.1E-18 96.5 12.5 107 19-130 68-176 (187)
181 cd01889 SelB_euk SelB subfamil 99.5 1.1E-13 2.3E-18 100.8 11.4 114 16-133 65-187 (192)
182 PF08477 Miro: Miro-like prote 99.5 6.7E-14 1.5E-18 93.9 9.4 75 11-86 42-119 (119)
183 TIGR03594 GTPase_EngA ribosome 99.5 1.1E-13 2.4E-18 112.3 12.4 103 19-132 47-160 (429)
184 cd00881 GTP_translation_factor 99.5 1.9E-13 4.1E-18 98.4 12.4 110 18-131 61-186 (189)
185 PRK05306 infB translation init 99.5 7.6E-14 1.7E-18 119.4 11.6 105 19-130 337-450 (787)
186 PRK00089 era GTPase Era; Revie 99.5 1.5E-13 3.2E-18 106.3 11.2 110 18-131 52-170 (292)
187 PRK09554 feoB ferrous iron tra 99.5 3.3E-13 7.1E-18 115.8 13.1 111 14-131 45-167 (772)
188 cd00880 Era_like Era (E. coli 99.5 2.4E-13 5.1E-18 94.5 10.2 109 18-130 44-162 (163)
189 PRK09518 bifunctional cytidyla 99.5 2.6E-13 5.7E-18 116.2 12.4 106 19-133 323-437 (712)
190 cd04163 Era Era subfamily. Er 99.5 5.1E-13 1.1E-17 93.8 11.2 110 17-130 49-167 (168)
191 cd01895 EngA2 EngA2 subfamily. 99.5 9.4E-13 2E-17 93.2 12.6 108 19-130 50-173 (174)
192 PF00009 GTP_EFTU: Elongation 99.5 5.5E-13 1.2E-17 96.8 11.3 113 16-132 67-187 (188)
193 PRK09518 bifunctional cytidyla 99.5 1.3E-12 2.8E-17 112.0 14.8 108 20-133 499-622 (712)
194 TIGR01394 TypA_BipA GTP-bindin 99.5 5.8E-13 1.3E-17 111.5 11.4 118 11-132 56-191 (594)
195 cd04105 SR_beta Signal recogni 99.5 1.9E-12 4.1E-17 95.1 12.7 73 17-89 46-123 (203)
196 COG1159 Era GTPase [General fu 99.5 8.4E-13 1.8E-17 100.0 10.4 109 18-131 53-171 (298)
197 COG1160 Predicted GTPases [Gen 99.4 1.6E-12 3.4E-17 103.6 12.3 102 20-132 52-165 (444)
198 PRK00093 GTP-binding protein D 99.4 8.7E-13 1.9E-17 107.3 11.0 111 19-134 221-346 (435)
199 TIGR00483 EF-1_alpha translati 99.4 8.6E-13 1.9E-17 107.1 10.9 111 13-125 79-200 (426)
200 TIGR00491 aIF-2 translation in 99.4 1.8E-12 3.9E-17 108.3 12.9 108 21-135 71-219 (590)
201 PRK00454 engB GTP-binding prot 99.4 3.4E-12 7.4E-17 92.8 12.8 107 19-131 70-193 (196)
202 TIGR03680 eif2g_arch translati 99.4 1.1E-12 2.5E-17 105.7 11.1 112 18-131 79-195 (406)
203 PRK10218 GTP-binding protein; 99.4 3.7E-12 8E-17 106.8 13.5 119 10-132 59-195 (607)
204 KOG0462 Elongation factor-type 99.4 2.1E-12 4.6E-17 104.4 10.4 116 15-134 121-237 (650)
205 cd00066 G-alpha G protein alph 99.4 4.9E-12 1.1E-16 98.9 12.1 132 3-135 146-314 (317)
206 PRK04000 translation initiatio 99.4 6.1E-12 1.3E-16 101.5 11.4 107 19-131 85-200 (411)
207 PRK12317 elongation factor 1-a 99.4 4E-12 8.7E-17 103.1 10.3 111 13-125 78-198 (425)
208 smart00275 G_alpha G protein a 99.4 3.1E-11 6.7E-16 95.2 14.8 132 2-135 168-337 (342)
209 COG0481 LepA Membrane GTPase L 99.4 5.9E-12 1.3E-16 100.5 10.1 116 15-136 72-190 (603)
210 cd01896 DRG The developmentall 99.3 2.3E-11 5.1E-16 91.2 12.4 107 18-131 46-225 (233)
211 COG0486 ThdF Predicted GTPase 99.3 1.5E-11 3.2E-16 98.3 11.5 123 1-134 223-378 (454)
212 cd01883 EF1_alpha Eukaryotic e 99.3 6.5E-12 1.4E-16 93.3 8.9 107 13-121 71-194 (219)
213 TIGR03598 GTPase_YsxC ribosome 99.3 1E-11 2.2E-16 89.3 9.6 98 20-121 65-179 (179)
214 PRK10512 selenocysteinyl-tRNA- 99.3 1.6E-11 3.5E-16 103.3 11.9 106 19-131 51-165 (614)
215 cd04168 TetM_like Tet(M)-like 99.3 4.2E-11 9.2E-16 90.0 12.9 73 12-88 57-129 (237)
216 cd04166 CysN_ATPS CysN_ATPS su 99.3 1.9E-11 4E-16 90.2 10.3 103 17-122 75-184 (208)
217 COG1160 Predicted GTPases [Gen 99.3 6.8E-11 1.5E-15 94.3 13.8 110 20-133 227-352 (444)
218 PRK04004 translation initiatio 99.3 4.2E-11 9E-16 100.4 13.1 105 21-132 73-218 (586)
219 KOG0077 Vesicle coat complex C 99.3 1.3E-11 2.7E-16 85.9 7.6 124 3-130 49-191 (193)
220 cd01885 EF2 EF2 (for archaea a 99.3 4.5E-11 9.8E-16 88.9 11.1 69 16-88 70-138 (222)
221 KOG1489 Predicted GTP-binding 99.3 7.7E-11 1.7E-15 90.0 11.1 107 20-129 245-364 (366)
222 cd04167 Snu114p Snu114p subfam 99.3 7.2E-11 1.6E-15 87.3 10.3 70 15-88 67-136 (213)
223 PRK14845 translation initiatio 99.2 2.4E-10 5.2E-15 100.4 14.6 106 21-133 528-674 (1049)
224 cd01876 YihA_EngB The YihA (En 99.2 1.6E-10 3.5E-15 81.2 11.0 105 20-130 46-169 (170)
225 cd04165 GTPBP1_like GTPBP1-lik 99.2 3E-10 6.4E-15 84.7 12.4 107 18-128 83-219 (224)
226 cd01884 EF_Tu EF-Tu subfamily. 99.2 6.6E-10 1.4E-14 81.2 13.0 104 13-120 59-171 (195)
227 COG0532 InfB Translation initi 99.2 5.6E-10 1.2E-14 90.5 13.6 106 19-134 55-172 (509)
228 cd01855 YqeH YqeH. YqeH is an 99.2 2.7E-10 5.9E-15 82.8 10.1 96 30-132 22-125 (190)
229 PRK12736 elongation factor Tu; 99.2 5.7E-10 1.2E-14 89.8 12.8 102 13-118 69-179 (394)
230 KOG1423 Ras-like GTPase ERA [C 99.2 3.2E-10 7E-15 86.3 9.8 114 15-132 116-271 (379)
231 PF10662 PduV-EutP: Ethanolami 99.2 6.7E-10 1.5E-14 76.6 10.5 99 22-128 39-142 (143)
232 TIGR00485 EF-Tu translation el 99.2 8E-10 1.7E-14 88.9 12.5 103 12-118 68-179 (394)
233 PLN00043 elongation factor 1-a 99.2 3.7E-10 8.1E-15 92.1 10.6 106 13-122 79-203 (447)
234 PRK00741 prfC peptide chain re 99.1 1.2E-09 2.6E-14 90.7 13.5 73 12-88 72-144 (526)
235 COG0370 FeoB Fe2+ transport sy 99.1 4.2E-10 9.1E-15 93.6 10.8 126 1-133 9-165 (653)
236 cd04169 RF3 RF3 subfamily. Pe 99.1 1.4E-09 3E-14 83.2 12.8 91 12-108 64-154 (267)
237 PTZ00327 eukaryotic translatio 99.1 5.8E-10 1.3E-14 91.0 11.1 109 20-131 118-232 (460)
238 cd01859 MJ1464 MJ1464. This f 99.1 4.3E-10 9.4E-15 79.1 8.3 95 32-132 2-96 (156)
239 KOG0082 G-protein alpha subuni 99.1 2.2E-09 4.8E-14 84.0 12.4 134 2-136 179-348 (354)
240 PRK12735 elongation factor Tu; 99.1 1.7E-09 3.6E-14 87.2 12.0 101 14-118 70-179 (396)
241 KOG1707 Predicted Ras related/ 99.1 2E-10 4.3E-15 93.7 6.5 117 17-133 54-176 (625)
242 COG0536 Obg Predicted GTPase [ 99.1 2.5E-09 5.4E-14 82.6 11.6 116 20-135 208-336 (369)
243 PRK09866 hypothetical protein; 99.1 3.9E-09 8.5E-14 88.0 13.4 109 19-129 230-350 (741)
244 PRK12289 GTPase RsgA; Reviewed 99.1 8.2E-10 1.8E-14 87.3 9.0 92 34-130 81-173 (352)
245 KOG1145 Mitochondrial translat 99.1 4.4E-09 9.5E-14 85.6 13.0 104 19-132 201-316 (683)
246 PRK00098 GTPase RsgA; Reviewed 99.1 2.3E-09 5.1E-14 83.2 10.9 86 40-129 78-164 (298)
247 COG1084 Predicted GTPase [Gene 99.0 3.5E-09 7.7E-14 81.4 11.2 120 14-137 210-341 (346)
248 cd01854 YjeQ_engC YjeQ/EngC. 99.0 1.5E-09 3.2E-14 83.9 9.0 86 39-129 75-161 (287)
249 PRK13351 elongation factor G; 99.0 5.3E-09 1.2E-13 89.7 13.1 72 14-89 68-139 (687)
250 TIGR02034 CysN sulfate adenyly 99.0 4E-09 8.7E-14 85.2 11.3 104 16-122 77-187 (406)
251 TIGR03597 GTPase_YqeH ribosome 99.0 2.5E-09 5.3E-14 85.1 9.6 96 28-130 49-151 (360)
252 COG1217 TypA Predicted membran 99.0 2.6E-09 5.7E-14 85.5 9.3 120 10-133 59-196 (603)
253 PRK05124 cysN sulfate adenylyl 99.0 2.8E-09 6.2E-14 87.6 9.6 107 14-123 102-216 (474)
254 PRK12740 elongation factor G; 99.0 1.9E-08 4E-13 86.2 14.6 68 17-88 58-125 (668)
255 COG2262 HflX GTPases [General 99.0 2.2E-08 4.8E-13 79.2 13.5 124 8-138 230-362 (411)
256 PRK12288 GTPase RsgA; Reviewed 99.0 5.4E-09 1.2E-13 82.6 10.1 88 40-130 118-206 (347)
257 PRK13768 GTPase; Provisional 99.0 7.3E-09 1.6E-13 78.6 10.2 109 20-131 98-246 (253)
258 cd01899 Ygr210 Ygr210 subfamil 98.9 1E-08 2.2E-13 80.1 10.6 54 75-132 214-269 (318)
259 CHL00071 tufA elongation facto 98.9 1.4E-08 3.1E-13 82.1 11.8 101 16-120 72-181 (409)
260 PTZ00141 elongation factor 1- 98.9 9.9E-09 2.1E-13 83.8 10.3 107 13-122 79-203 (446)
261 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1E-08 2.2E-13 76.6 9.4 114 18-133 47-177 (232)
262 PRK00049 elongation factor Tu; 98.9 4.7E-08 1E-12 78.8 13.3 101 14-118 70-179 (396)
263 cd01886 EF-G Elongation factor 98.9 1.2E-08 2.7E-13 78.1 9.0 69 17-89 62-130 (270)
264 PLN03127 Elongation factor Tu; 98.9 4.9E-08 1.1E-12 79.7 12.6 99 13-115 118-225 (447)
265 PRK05506 bifunctional sulfate 98.8 3.2E-08 6.9E-13 84.2 11.1 103 17-122 102-211 (632)
266 PLN03126 Elongation factor Tu; 98.8 3.2E-08 7E-13 81.3 10.8 101 15-119 140-249 (478)
267 TIGR00503 prfC peptide chain r 98.8 3.6E-08 7.9E-13 81.9 11.0 75 11-89 72-146 (527)
268 PF00503 G-alpha: G-protein al 98.8 6.6E-08 1.4E-12 77.8 11.4 128 3-131 220-389 (389)
269 KOG1191 Mitochondrial GTPase [ 98.8 2.1E-08 4.4E-13 80.8 8.2 135 1-136 274-454 (531)
270 cd04170 EF-G_bact Elongation f 98.8 1.1E-07 2.5E-12 72.7 11.9 88 17-110 62-149 (268)
271 COG0218 Predicted GTPase [Gene 98.8 1.3E-07 2.8E-12 68.4 11.2 107 21-132 72-197 (200)
272 PRK12739 elongation factor G; 98.8 1.9E-07 4E-12 80.3 12.8 69 17-89 71-139 (691)
273 TIGR00484 EF-G translation elo 98.8 9E-08 2E-12 82.2 10.9 95 17-117 73-171 (689)
274 KOG0090 Signal recognition par 98.8 7.6E-08 1.6E-12 69.9 8.8 109 21-130 84-237 (238)
275 cd04104 p47_IIGP_like p47 (47- 98.7 2.5E-07 5.5E-12 67.6 11.0 108 20-134 53-186 (197)
276 PF09439 SRPRB: Signal recogni 98.7 6.5E-08 1.4E-12 69.5 7.5 72 19-90 49-127 (181)
277 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.1E-07 2.4E-12 67.0 7.9 88 39-131 5-94 (157)
278 cd01849 YlqF_related_GTPase Yl 98.6 2.4E-07 5.2E-12 65.1 8.5 84 44-132 1-85 (155)
279 COG5256 TEF1 Translation elong 98.6 2.8E-07 6E-12 73.1 9.4 109 13-123 79-202 (428)
280 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.4E-07 5.3E-12 64.1 7.8 77 37-119 6-84 (141)
281 PRK13796 GTPase YqeH; Provisio 98.6 5.8E-07 1.3E-11 71.7 10.4 93 30-130 57-157 (365)
282 COG1163 DRG Predicted GTPase [ 98.6 1.9E-06 4.2E-11 66.5 11.8 112 14-132 105-289 (365)
283 KOG1144 Translation initiation 98.5 2.6E-07 5.6E-12 77.8 7.5 115 21-142 542-697 (1064)
284 cd01856 YlqF YlqF. Proteins o 98.5 4.2E-07 9.2E-12 64.9 7.6 95 31-133 8-102 (171)
285 TIGR00101 ureG urease accessor 98.5 1.6E-06 3.5E-11 63.5 10.3 103 19-132 92-196 (199)
286 KOG1490 GTP-binding protein CR 98.5 5.1E-07 1.1E-11 73.2 7.8 124 14-138 210-347 (620)
287 PRK09602 translation-associate 98.5 1.8E-06 4E-11 69.5 10.9 51 75-129 217-268 (396)
288 COG4917 EutP Ethanolamine util 98.5 8.2E-07 1.8E-11 59.4 6.9 98 23-129 41-143 (148)
289 TIGR03596 GTPase_YlqF ribosome 98.5 1.3E-06 2.8E-11 67.2 8.9 101 26-134 4-105 (276)
290 TIGR00490 aEF-2 translation el 98.4 8.6E-07 1.9E-11 76.6 8.4 73 12-88 79-151 (720)
291 KOG0099 G protein subunit Galp 98.4 4.1E-06 8.9E-11 63.0 10.8 118 17-134 200-371 (379)
292 COG5257 GCD11 Translation init 98.4 9.9E-07 2.2E-11 68.0 7.5 113 20-134 87-204 (415)
293 PRK01889 GTPase RsgA; Reviewed 98.4 1.3E-06 2.9E-11 69.4 8.6 83 40-128 110-193 (356)
294 cd01850 CDC_Septin CDC/Septin. 98.4 2.8E-06 6.1E-11 65.3 9.7 99 11-114 55-184 (276)
295 PRK00007 elongation factor G; 98.4 3.1E-06 6.8E-11 72.9 10.8 95 17-117 73-171 (693)
296 COG2895 CysN GTPases - Sulfate 98.4 2.5E-06 5.5E-11 66.6 9.0 102 17-121 84-192 (431)
297 PF01926 MMR_HSR1: 50S ribosom 98.4 4.6E-06 9.9E-11 55.5 8.9 64 13-84 43-116 (116)
298 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.9E-06 6.3E-11 65.6 8.9 101 26-134 7-108 (287)
299 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 8.5E-06 1.8E-10 59.4 10.9 111 19-132 49-184 (196)
300 TIGR00073 hypB hydrogenase acc 98.4 5.8E-06 1.3E-10 60.9 9.8 101 19-130 103-205 (207)
301 KOG0085 G protein subunit Galp 98.4 9.4E-07 2E-11 65.4 5.5 135 2-137 183-354 (359)
302 PRK09435 membrane ATPase/prote 98.3 8.9E-06 1.9E-10 64.0 10.1 109 18-137 148-265 (332)
303 smart00010 small_GTPase Small 98.3 3.6E-06 7.9E-11 56.2 7.0 80 32-121 36-115 (124)
304 KOG0705 GTPase-activating prot 98.3 9.6E-06 2.1E-10 66.6 10.2 126 8-138 66-195 (749)
305 COG1162 Predicted GTPases [Gen 98.3 8.1E-06 1.8E-10 62.8 8.9 97 31-130 68-165 (301)
306 PF03029 ATP_bind_1: Conserved 98.2 2E-06 4.4E-11 64.7 5.5 111 20-130 92-235 (238)
307 COG3276 SelB Selenocysteine-sp 98.2 2.4E-05 5.2E-10 62.7 11.6 110 19-132 50-162 (447)
308 COG4108 PrfC Peptide chain rel 98.2 1.2E-05 2.6E-10 64.5 9.7 97 8-110 70-166 (528)
309 PRK07560 elongation factor EF- 98.1 1.2E-05 2.6E-10 69.8 8.5 71 14-88 82-152 (731)
310 KOG0458 Elongation factor 1 al 98.1 1.9E-05 4.1E-10 65.2 9.1 114 8-123 244-373 (603)
311 KOG3886 GTP-binding protein [S 98.1 2.2E-05 4.7E-10 58.2 8.4 70 19-89 53-130 (295)
312 PLN00116 translation elongatio 98.1 9.8E-06 2.1E-10 71.2 7.8 68 17-88 96-163 (843)
313 COG3596 Predicted GTPase [Gene 98.1 2.1E-05 4.6E-10 59.6 7.4 112 19-132 87-222 (296)
314 PTZ00416 elongation factor 2; 98.0 1.5E-05 3.2E-10 70.1 7.4 67 18-88 91-157 (836)
315 TIGR00750 lao LAO/AO transport 98.0 3.2E-05 6.9E-10 60.2 8.2 104 18-132 126-238 (300)
316 KOG1707 Predicted Ras related/ 98.0 4.6E-05 9.9E-10 63.0 9.2 115 16-135 471-586 (625)
317 PTZ00258 GTP-binding protein; 98.0 7.9E-05 1.7E-09 59.9 9.4 44 75-118 220-266 (390)
318 cd01882 BMS1 Bms1. Bms1 is an 97.9 0.00016 3.6E-09 53.9 10.3 95 17-118 81-182 (225)
319 COG0480 FusA Translation elong 97.9 9.5E-05 2.1E-09 63.4 9.7 68 18-89 75-142 (697)
320 TIGR00991 3a0901s02IAP34 GTP-b 97.8 0.00014 3.1E-09 56.5 8.6 73 18-90 85-168 (313)
321 KOG0461 Selenocysteine-specifi 97.8 0.00058 1.3E-08 53.7 11.2 115 15-134 66-191 (522)
322 COG0050 TufB GTPases - transla 97.8 0.00017 3.6E-09 55.4 7.9 93 20-116 76-177 (394)
323 KOG0468 U5 snRNP-specific prot 97.8 6.8E-05 1.5E-09 63.1 6.2 69 15-87 193-261 (971)
324 COG5258 GTPBP1 GTPase [General 97.7 0.00066 1.4E-08 54.0 11.2 102 20-125 202-332 (527)
325 KOG1532 GTPase XAB1, interacts 97.7 0.00058 1.3E-08 52.1 9.8 115 18-134 115-266 (366)
326 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00024 5.2E-09 41.1 5.9 43 43-86 14-58 (58)
327 KOG3905 Dynein light intermedi 97.7 0.0013 2.8E-08 51.4 11.6 116 19-134 100-292 (473)
328 PF05783 DLIC: Dynein light in 97.6 0.00093 2E-08 55.1 11.0 117 18-134 72-266 (472)
329 KOG0465 Mitochondrial elongati 97.6 0.00033 7.1E-09 58.5 8.1 66 18-87 103-168 (721)
330 smart00053 DYNc Dynamin, GTPas 97.5 0.00057 1.2E-08 51.5 8.0 68 19-89 125-206 (240)
331 cd01853 Toc34_like Toc34-like 97.5 0.00054 1.2E-08 52.0 7.9 70 19-89 79-163 (249)
332 COG0378 HypB Ni2+-binding GTPa 97.5 0.00026 5.6E-09 51.2 5.4 79 44-131 119-200 (202)
333 TIGR02836 spore_IV_A stage IV 97.5 0.002 4.3E-08 52.2 10.6 96 15-115 87-218 (492)
334 KOG0466 Translation initiation 97.4 0.00018 3.9E-09 55.6 4.1 108 20-133 126-242 (466)
335 PRK09601 GTP-binding protein Y 97.4 0.0041 8.8E-08 49.7 11.4 41 75-115 199-240 (364)
336 PF00350 Dynamin_N: Dynamin fa 97.4 0.00055 1.2E-08 48.3 5.9 63 20-85 102-168 (168)
337 KOG0460 Mitochondrial translat 97.4 0.002 4.3E-08 50.6 9.3 92 21-115 119-218 (449)
338 cd03110 Fer4_NifH_child This p 97.4 0.0031 6.8E-08 45.1 9.9 86 17-111 91-176 (179)
339 PRK10463 hydrogenase nickel in 97.3 0.00069 1.5E-08 52.3 5.8 55 76-130 231-287 (290)
340 KOG3887 Predicted small GTPase 97.2 0.0051 1.1E-07 46.3 9.2 115 17-134 73-204 (347)
341 cd01900 YchF YchF subfamily. 97.1 0.0049 1.1E-07 47.4 9.2 39 76-115 196-236 (274)
342 KOG0464 Elongation factor G [T 97.1 0.00017 3.6E-09 57.9 1.0 74 11-88 94-167 (753)
343 KOG1424 Predicted GTP-binding 97.0 0.0016 3.5E-08 53.5 5.8 81 29-116 162-244 (562)
344 COG1161 Predicted GTPases [Gen 97.0 0.0031 6.7E-08 49.7 7.0 94 26-126 17-111 (322)
345 KOG0467 Translation elongation 97.0 0.0022 4.7E-08 55.0 6.3 71 9-87 62-136 (887)
346 COG1703 ArgK Putative periplas 96.6 0.017 3.7E-07 44.7 8.1 111 15-137 140-259 (323)
347 cd04178 Nucleostemin_like Nucl 96.6 0.0095 2.1E-07 42.6 6.3 44 44-89 1-44 (172)
348 KOG1143 Predicted translation 96.5 0.031 6.6E-07 44.7 9.2 100 20-123 250-379 (591)
349 TIGR00993 3a0901s04IAP86 chlor 96.4 0.029 6.2E-07 48.2 8.7 71 19-89 166-250 (763)
350 KOG0448 Mitofusin 1 GTPase, in 96.3 0.033 7.1E-07 47.5 8.8 92 20-115 207-309 (749)
351 PF04548 AIG1: AIG1 family; I 96.3 0.034 7.4E-07 41.1 8.2 100 13-115 45-163 (212)
352 PF03308 ArgK: ArgK protein; 96.2 0.0086 1.9E-07 45.5 4.7 102 19-134 122-232 (266)
353 KOG1954 Endocytosis/signaling 96.2 0.0079 1.7E-07 47.9 4.6 67 20-89 148-225 (532)
354 PF11111 CENP-M: Centromere pr 96.2 0.083 1.8E-06 37.7 9.3 88 42-130 64-151 (176)
355 KOG2486 Predicted GTPase [Gene 96.1 0.01 2.2E-07 45.5 4.3 121 3-129 167-313 (320)
356 KOG2484 GTPase [General functi 96.0 0.015 3.3E-07 46.5 5.3 67 29-104 133-201 (435)
357 KOG4273 Uncharacterized conser 95.8 0.048 1E-06 41.3 7.0 96 41-138 77-228 (418)
358 KOG0469 Elongation factor 2 [T 95.8 0.016 3.5E-07 48.0 4.6 69 15-87 94-162 (842)
359 cd02038 FleN-like FleN is a me 95.5 0.11 2.4E-06 35.6 7.6 66 19-88 45-110 (139)
360 TIGR00064 ftsY signal recognit 95.5 0.21 4.6E-06 38.4 9.8 97 18-127 154-263 (272)
361 COG3640 CooC CO dehydrogenase 95.2 0.21 4.6E-06 37.5 8.5 78 19-108 134-212 (255)
362 PRK14974 cell division protein 95.2 0.28 6E-06 39.0 9.6 100 19-131 223-329 (336)
363 PHA02518 ParA-like protein; Pr 95.2 0.23 5E-06 36.1 8.7 67 18-87 76-145 (211)
364 KOG0459 Polypeptide release fa 95.0 0.05 1.1E-06 43.9 4.9 104 19-124 157-278 (501)
365 KOG2423 Nucleolar GTPase [Gene 94.9 0.14 3.1E-06 41.3 7.2 101 40-143 211-311 (572)
366 PF05049 IIGP: Interferon-indu 94.9 0.25 5.3E-06 39.8 8.6 106 20-132 87-218 (376)
367 PF09419 PGP_phosphatase: Mito 94.8 0.75 1.6E-05 32.8 10.1 85 40-127 36-127 (168)
368 COG4963 CpaE Flp pilus assembl 94.8 0.38 8.2E-06 38.5 9.4 69 18-89 217-285 (366)
369 KOG0463 GTP-binding protein GP 94.6 0.18 3.8E-06 40.6 7.0 99 20-123 220-349 (641)
370 KOG1486 GTP-binding protein DR 94.6 0.92 2E-05 34.7 10.4 50 76-132 239-288 (364)
371 PRK10416 signal recognition pa 94.6 0.46 1E-05 37.4 9.4 97 18-126 196-304 (318)
372 KOG0410 Predicted GTP binding 94.4 0.076 1.6E-06 41.8 4.4 107 19-136 226-345 (410)
373 PF14331 ImcF-related_N: ImcF- 94.2 0.18 4E-06 38.6 6.2 97 41-137 24-136 (266)
374 TIGR03348 VI_IcmF type VI secr 93.9 0.41 8.9E-06 44.3 8.9 69 21-89 163-257 (1169)
375 cd02036 MinD Bacterial cell di 93.7 1.7 3.7E-05 30.5 10.2 84 20-110 64-147 (179)
376 cd03111 CpaE_like This protein 93.6 0.64 1.4E-05 30.2 7.3 62 20-84 44-106 (106)
377 COG1149 MinD superfamily P-loo 93.6 1.2 2.6E-05 34.2 9.5 80 19-110 164-243 (284)
378 TIGR01425 SRP54_euk signal rec 93.3 1.3 2.8E-05 36.5 9.9 86 18-113 182-273 (429)
379 TIGR03371 cellulose_yhjQ cellu 93.3 1.3 2.8E-05 33.0 9.4 66 20-88 116-181 (246)
380 PRK13505 formate--tetrahydrofo 92.8 1 2.2E-05 38.0 8.7 70 58-132 358-429 (557)
381 KOG0447 Dynamin-like GTP bindi 92.4 3 6.5E-05 35.5 10.9 89 13-104 405-508 (980)
382 cd02037 MRP-like MRP (Multiple 92.1 2.5 5.5E-05 29.7 9.1 88 18-110 67-162 (169)
383 TIGR00959 ffh signal recogniti 92.0 1.6 3.4E-05 36.0 8.9 86 19-114 183-274 (428)
384 PRK12727 flagellar biosynthesi 92.0 3.8 8.2E-05 34.8 11.1 95 18-124 428-528 (559)
385 COG5192 BMS1 GTP-binding prote 92.0 2.2 4.9E-05 36.4 9.7 71 13-89 107-177 (1077)
386 PF00735 Septin: Septin; Inte 91.9 1.3 2.8E-05 34.3 8.0 94 13-111 57-180 (281)
387 PF00448 SRP54: SRP54-type pro 91.8 1 2.3E-05 32.8 7.0 93 19-123 84-182 (196)
388 cd02117 NifH_like This family 91.8 3.2 7E-05 30.4 9.7 89 18-111 116-207 (212)
389 TIGR01968 minD_bact septum sit 91.3 2.8 6.1E-05 31.4 9.3 64 19-87 112-175 (261)
390 COG0523 Putative GTPases (G3E 90.5 2 4.4E-05 33.9 7.9 98 19-124 85-193 (323)
391 cd03112 CobW_like The function 90.5 1.3 2.8E-05 31.1 6.2 64 18-87 86-158 (158)
392 PRK00771 signal recognition pa 90.4 3.8 8.3E-05 33.8 9.7 85 20-114 177-267 (437)
393 PRK13185 chlL protochlorophyll 90.3 3.4 7.5E-05 31.4 8.9 84 18-110 117-202 (270)
394 PRK13849 putative crown gall t 90.0 3.8 8.3E-05 30.7 8.8 66 18-86 83-151 (231)
395 cd03114 ArgK-like The function 89.3 1.8 3.9E-05 30.1 6.1 58 18-86 91-148 (148)
396 cd02042 ParA ParA and ParB of 89.0 3.8 8.3E-05 26.0 7.2 45 19-66 40-84 (104)
397 COG1618 Predicted nucleotide k 88.9 6.7 0.00014 28.0 10.8 106 11-131 43-175 (179)
398 cd03115 SRP The signal recogni 88.8 6.4 0.00014 27.6 9.2 83 19-111 83-171 (173)
399 COG3523 IcmF Type VI protein s 88.8 3.3 7.2E-05 38.3 8.8 69 21-89 176-270 (1188)
400 PF01656 CbiA: CobQ/CobB/MinD/ 88.4 1.2 2.6E-05 31.7 5.0 68 19-89 95-162 (195)
401 COG5019 CDC3 Septin family pro 87.9 7 0.00015 31.4 9.1 92 15-111 78-200 (373)
402 PRK10818 cell division inhibit 87.9 6.1 0.00013 30.0 8.8 68 18-88 113-186 (270)
403 CHL00175 minD septum-site dete 87.9 6.9 0.00015 29.9 9.1 65 18-87 126-190 (281)
404 PRK10867 signal recognition pa 87.6 4.8 0.0001 33.2 8.4 86 19-114 184-275 (433)
405 PF07015 VirC1: VirC1 protein; 87.2 4.9 0.00011 30.2 7.5 103 18-125 83-187 (231)
406 PRK05703 flhF flagellar biosyn 86.7 17 0.00036 30.0 11.3 96 19-126 300-403 (424)
407 TIGR02016 BchX chlorophyllide 86.3 14 0.0003 28.8 10.8 111 18-136 122-253 (296)
408 cd02032 Bchl_like This family 85.8 9.5 0.0002 28.9 8.8 68 18-87 115-184 (267)
409 COG1419 FlhF Flagellar GTP-bin 85.5 7.6 0.00016 31.7 8.3 95 19-125 282-383 (407)
410 PRK14723 flhF flagellar biosyn 85.1 8.6 0.00019 34.1 9.0 104 20-133 265-376 (767)
411 PRK11537 putative GTP-binding 84.4 9.3 0.0002 30.2 8.3 95 19-124 91-196 (318)
412 COG0012 Predicted GTPase, prob 84.4 0.87 1.9E-05 36.5 2.5 40 75-115 206-247 (372)
413 cd02033 BchX Chlorophyllide re 84.3 14 0.0003 29.4 9.2 108 18-135 147-276 (329)
414 PF03193 DUF258: Protein of un 83.9 2.7 6E-05 29.7 4.6 30 98-127 4-33 (161)
415 KOG0780 Signal recognition par 83.8 4.7 0.0001 32.8 6.3 44 17-60 182-231 (483)
416 TIGR01281 DPOR_bchL light-inde 83.8 12 0.00025 28.4 8.5 68 18-87 115-184 (268)
417 PRK12723 flagellar biosynthesi 83.1 24 0.00051 28.8 10.5 103 18-132 254-364 (388)
418 PRK12726 flagellar biosynthesi 83.1 13 0.00028 30.4 8.6 91 19-121 286-382 (407)
419 COG0012 Predicted GTPase, prob 82.5 4.1 8.8E-05 32.8 5.6 36 19-54 67-109 (372)
420 KOG2485 Conserved ATP/GTP bind 82.3 6.5 0.00014 31.0 6.4 100 26-132 29-131 (335)
421 TIGR01007 eps_fam capsular exo 81.8 9.6 0.00021 27.6 7.1 68 18-89 127-194 (204)
422 PRK11889 flhF flagellar biosyn 81.3 17 0.00036 30.0 8.7 90 19-120 321-416 (436)
423 PF09547 Spore_IV_A: Stage IV 81.0 14 0.00029 30.7 8.0 56 55-115 162-218 (492)
424 COG0552 FtsY Signal recognitio 80.6 9.8 0.00021 30.3 7.0 93 18-123 221-326 (340)
425 PF02492 cobW: CobW/HypB/UreG, 80.1 3.6 7.7E-05 29.3 4.2 80 19-106 85-171 (178)
426 PRK06731 flhF flagellar biosyn 79.4 26 0.00056 27.0 8.9 92 18-121 154-251 (270)
427 PRK14721 flhF flagellar biosyn 79.4 34 0.00074 28.2 10.7 104 19-134 270-380 (420)
428 cd02040 NifH NifH gene encodes 79.1 20 0.00044 27.0 8.4 67 18-85 116-185 (270)
429 COG0541 Ffh Signal recognition 78.1 9.8 0.00021 31.4 6.5 43 19-61 183-231 (451)
430 KOG2052 Activin A type IB rece 77.6 11 0.00023 31.3 6.5 48 20-67 212-259 (513)
431 KOG2655 Septin family protein 76.8 11 0.00023 30.5 6.2 70 15-89 75-172 (366)
432 cd00477 FTHFS Formyltetrahydro 76.7 19 0.00042 30.3 7.9 56 74-131 355-412 (524)
433 PRK13507 formate--tetrahydrofo 75.5 20 0.00044 30.6 7.8 56 74-131 400-457 (587)
434 TIGR01969 minD_arch cell divis 75.4 22 0.00047 26.4 7.5 65 18-88 108-173 (251)
435 KOG3929 Uncharacterized conser 74.0 7.8 0.00017 29.9 4.6 37 21-57 94-134 (363)
436 PRK14722 flhF flagellar biosyn 72.5 51 0.0011 26.8 9.3 97 19-121 216-321 (374)
437 TIGR03602 streptolysinS bacter 72.1 1.5 3.2E-05 24.2 0.3 6 168-173 24-29 (56)
438 COG2759 MIS1 Formyltetrahydrof 71.6 30 0.00065 28.9 7.7 59 73-133 367-427 (554)
439 TIGR03815 CpaE_hom_Actino heli 71.6 36 0.00079 26.6 8.2 82 18-111 204-285 (322)
440 COG2179 Predicted hydrolase of 69.5 24 0.00051 25.3 5.9 45 55-111 45-89 (175)
441 KOG2961 Predicted hydrolase (H 68.4 39 0.00086 23.9 7.6 53 75-128 79-131 (190)
442 PRK13506 formate--tetrahydrofo 68.2 35 0.00076 29.2 7.6 56 74-131 392-450 (578)
443 COG1908 FrhD Coenzyme F420-red 67.9 12 0.00027 25.1 4.0 61 77-137 56-127 (132)
444 CHL00072 chlL photochlorophyll 67.2 57 0.0012 25.3 10.1 68 18-87 115-184 (290)
445 TIGR02475 CobW cobalamin biosy 67.0 64 0.0014 25.8 9.0 98 19-125 93-223 (341)
446 COG0218 Predicted GTPase [Gene 66.4 41 0.00089 24.8 6.8 54 62-115 91-144 (200)
447 KOG1491 Predicted GTP-binding 66.0 8.4 0.00018 30.9 3.4 36 19-54 84-126 (391)
448 COG1010 CobJ Precorrin-3B meth 65.9 41 0.00089 25.5 6.8 48 38-85 150-197 (249)
449 PF08438 MMR_HSR1_C: GTPase of 65.3 9.8 0.00021 25.1 3.2 31 81-115 1-32 (109)
450 PLN02759 Formate--tetrahydrofo 64.2 48 0.001 28.7 7.7 56 74-131 449-507 (637)
451 PF01268 FTHFS: Formate--tetra 63.7 7 0.00015 33.2 2.8 58 73-132 369-428 (557)
452 KOG0781 Signal recognition par 62.5 20 0.00044 30.1 5.1 91 18-113 466-565 (587)
453 PRK13232 nifH nitrogenase redu 62.1 68 0.0015 24.4 8.8 68 18-86 116-185 (273)
454 cd04170 EF-G_bact Elongation f 61.9 18 0.00038 27.5 4.6 25 107-131 241-265 (268)
455 TIGR01287 nifH nitrogenase iro 61.4 70 0.0015 24.3 8.6 66 18-84 115-183 (275)
456 cd02035 ArsA ArsA ATPase funct 59.4 67 0.0015 23.5 7.2 67 19-88 114-183 (217)
457 TIGR03029 EpsG chain length de 58.2 54 0.0012 24.9 6.7 50 19-70 213-262 (274)
458 PTZ00386 formyl tetrahydrofola 58.1 77 0.0017 27.5 7.8 56 74-131 436-495 (625)
459 PRK13695 putative NTPase; Prov 57.5 64 0.0014 22.6 8.4 81 37-131 91-172 (174)
460 KOG1547 Septin CDC10 and relat 57.3 88 0.0019 24.1 9.8 69 42-115 155-226 (336)
461 KOG0446 Vacuolar sorting prote 57.0 2.4 5.3E-05 36.8 -1.0 69 19-89 132-213 (657)
462 PRK13705 plasmid-partitioning 56.5 1.1E+02 0.0023 24.9 8.4 68 18-88 234-307 (388)
463 PRK12724 flagellar biosynthesi 56.2 1.2E+02 0.0026 25.3 9.1 87 18-114 299-394 (432)
464 PRK11670 antiporter inner memb 55.9 1.1E+02 0.0023 24.8 14.3 67 18-88 215-282 (369)
465 PF10036 RLL: Putative carniti 55.6 22 0.00047 27.1 4.1 78 50-140 17-96 (249)
466 TIGR01005 eps_transp_fam exopo 55.6 46 0.00099 29.5 6.6 68 18-89 655-722 (754)
467 PF03709 OKR_DC_1_N: Orn/Lys/A 55.3 57 0.0012 21.4 6.5 42 42-85 36-77 (115)
468 PHA02519 plasmid partition pro 52.6 1.3E+02 0.0027 24.6 8.3 68 18-88 234-307 (387)
469 PF03358 FMN_red: NADPH-depend 50.9 75 0.0016 21.5 8.9 74 36-110 64-140 (152)
470 TIGR03566 FMN_reduc_MsuE FMN r 50.6 36 0.00078 24.0 4.4 49 36-84 62-110 (174)
471 PRK13556 azoreductase; Provisi 50.3 97 0.0021 22.5 9.7 71 38-108 85-173 (208)
472 PRK06995 flhF flagellar biosyn 49.5 1.6E+02 0.0035 24.9 11.7 102 20-133 336-444 (484)
473 PF10087 DUF2325: Uncharacteri 49.0 66 0.0014 20.3 7.2 18 95-112 64-81 (97)
474 PRK06756 flavodoxin; Provision 49.0 71 0.0015 21.7 5.6 70 39-108 46-116 (148)
475 PRK10037 cell division protein 48.0 1.1E+02 0.0025 22.8 7.0 35 17-53 116-150 (250)
476 KOG1534 Putative transcription 47.4 62 0.0013 24.4 5.1 69 21-89 100-178 (273)
477 PRK13231 nitrogenase reductase 47.4 1.2E+02 0.0026 22.8 8.0 66 18-86 113-179 (264)
478 cd02011 TPP_PK Thiamine pyroph 46.7 1.2E+02 0.0027 22.7 8.7 95 40-134 76-176 (227)
479 PF00205 TPP_enzyme_M: Thiamin 46.3 48 0.001 22.2 4.3 37 75-115 12-48 (137)
480 PF13651 EcoRI_methylase: Aden 45.9 51 0.0011 26.2 4.7 62 28-104 120-182 (336)
481 PF14606 Lipase_GDSL_3: GDSL-l 45.8 58 0.0013 23.5 4.7 56 26-82 41-100 (178)
482 PRK06242 flavodoxin; Provision 45.6 93 0.002 21.0 6.7 67 39-110 40-106 (150)
483 PRK13869 plasmid-partitioning 45.5 1.6E+02 0.0034 24.1 7.8 68 18-88 251-327 (405)
484 PRK13230 nitrogenase reductase 44.5 1.4E+02 0.003 22.7 8.6 50 18-68 116-166 (279)
485 TIGR00640 acid_CoA_mut_C methy 44.4 99 0.0021 21.0 11.7 100 21-134 31-130 (132)
486 cd02067 B12-binding B12 bindin 44.2 64 0.0014 21.0 4.6 58 42-111 50-107 (119)
487 cd08166 MPP_Cdc1_like_1 unchar 43.8 88 0.0019 22.9 5.5 64 42-105 42-111 (195)
488 PF14784 ECIST_Cterm: C-termin 43.8 60 0.0013 22.0 4.3 40 41-80 82-123 (126)
489 TIGR03453 partition_RepA plasm 43.0 1.8E+02 0.0039 23.5 8.2 69 18-88 234-310 (387)
490 KOG1432 Predicted DNA repair e 42.9 1.3E+02 0.0029 24.3 6.6 66 39-107 97-164 (379)
491 TIGR03567 FMN_reduc_SsuE FMN r 42.9 45 0.00098 23.5 3.9 71 36-107 59-129 (171)
492 COG1512 Beta-propeller domains 42.4 1.6E+02 0.0035 22.8 11.4 99 42-146 63-172 (271)
493 cd01886 EF-G Elongation factor 42.1 50 0.0011 25.3 4.3 25 107-131 243-267 (270)
494 PRK13660 hypothetical protein; 41.7 1.3E+02 0.0029 21.7 7.7 14 40-53 127-140 (182)
495 KOG4102 Uncharacterized conser 41.2 9.2 0.0002 25.4 0.1 8 165-172 59-66 (121)
496 PRK05569 flavodoxin; Provision 39.3 1.2E+02 0.0025 20.3 9.6 88 39-130 45-135 (141)
497 KOG1249 Predicted GTPases [Gen 39.1 64 0.0014 27.6 4.6 89 37-131 105-210 (572)
498 PRK10569 NAD(P)H-dependent FMN 38.5 63 0.0014 23.4 4.1 71 36-107 60-130 (191)
499 PF07491 PPI_Ypi1: Protein pho 37.8 13 0.00027 21.7 0.3 8 165-172 33-40 (60)
500 COG3033 TnaA Tryptophanase [Am 36.7 1.3E+02 0.0029 24.6 5.8 52 68-119 178-232 (471)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-36 Score=212.47 Aligned_cols=162 Identities=42% Similarity=0.735 Sum_probs=140.9
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.|+| +.+++.++|+.+.|++|||+||++|+.....||++|+|+|||||+++.+||+.++.|+.++..+...++|.++
T Consensus 40 sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lL 119 (205)
T KOG0084|consen 40 STIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLL 119 (205)
T ss_pred ceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEE
Confidence 4566 6668889999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEec
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 159 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (174)
||||+|+.+.+.++.+++++|+..++++ ++++||+++.|++++|..|...+..++........ .+..+....
T Consensus 120 VGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~-------~~~~~~ql~ 192 (205)
T KOG0084|consen 120 VGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWST-------ASLESVQLK 192 (205)
T ss_pred EeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCc-------CCCCceeeC
Confidence 9999999999999999999999999999 99999999999999999999999998876654443 122222223
Q ss_pred CCCCCCCCCCCCC
Q 043745 160 GASEANTKKPCCS 172 (174)
Q Consensus 160 ~~~~~~~~~~c~~ 172 (174)
+.|...++++||+
T Consensus 193 ~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 193 GTPVKKSNGGCCE 205 (205)
T ss_pred CCCcccccCCCCC
Confidence 3456666677875
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=207.09 Aligned_cols=137 Identities=45% Similarity=0.732 Sum_probs=129.2
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| .++++.+++..+.+.+|||+|+++|.++.+.||++|+++|+|||+++.+||..++.|+.++.+..++++-|.
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via 114 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA 114 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 48999 788889999999999999999999999999999999999999999999999999999999988887788899
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
|+|||+||.+.+++..++++.+|+..|+.++++||+++.|++++|..|.+.++.......
T Consensus 115 lvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 115 LVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred EecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 999999999999999999999999999999999999999999999999999888765554
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=202.06 Aligned_cols=132 Identities=44% Similarity=0.829 Sum_probs=126.2
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
+.+++.+++..+.+++|||+||++|+.+.+.||++|+++++|||+++..||+++..|+..|..+.+.++|++|||||+|+
T Consensus 50 k~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 50 KIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL 129 (207)
T ss_pred EEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc
Confidence 66688999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
...|++..+.++.+|.++|+.++|+||++|.||++.|..|++.++.++.+..
T Consensus 130 ~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~~ 181 (207)
T KOG0078|consen 130 EEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDAE 181 (207)
T ss_pred cccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchhh
Confidence 9999999999999999999999999999999999999999999998766553
No 4
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-34 Score=202.65 Aligned_cols=140 Identities=70% Similarity=1.115 Sum_probs=130.7
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
+|+| .+.++.++++.+..+||||+||++|+.....||+++.++++|||++...+|+.+.+|+.+++.+.+.+++++|
T Consensus 45 sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimL 124 (222)
T KOG0087|consen 45 STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIML 124 (222)
T ss_pred cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4555 4457789999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 143 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~ 143 (174)
|+||+||...+.+..++++.++++.++.++++||..+.|+++.|+.++..|+....++.....
T Consensus 125 vGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~ 187 (222)
T KOG0087|consen 125 VGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDEN 187 (222)
T ss_pred eecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999877765554
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=197.50 Aligned_cols=139 Identities=46% Similarity=0.796 Sum_probs=128.2
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
--+.++++++.+.|++|||+|++.|++..+.||+++-++|+|||++++++|..+..|+..++++..++..|+|++||+||
T Consensus 44 g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL 123 (216)
T KOG0098|consen 44 GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL 123 (216)
T ss_pred ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence 34477899999999999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA 146 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~ 146 (174)
...++|+.++++.||+++|+.++++||++++|+++.|......|++.....-.-.-.+.
T Consensus 124 ~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~~~~~~~ 182 (216)
T KOG0098|consen 124 EARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVFDDINES 182 (216)
T ss_pred hccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999998766544433333
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=193.93 Aligned_cols=134 Identities=37% Similarity=0.658 Sum_probs=124.8
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCeE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVI 78 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi 78 (174)
+||+| -++++.+.+..++|++|||+||++|+++.+.|++++.++|+|||+++..||+...+|++.++...+. ++-|
T Consensus 52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI 131 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVII 131 (221)
T ss_pred cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEE
Confidence 58888 6778899999999999999999999999999999999999999999999999999999999887774 5889
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
+|||||.||.+.++++.+++...|++++..|+++||+.|.|++++|..+...+.....
T Consensus 132 ~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 132 FLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred EEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999998877766544
No 7
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=186.49 Aligned_cols=168 Identities=37% Similarity=0.678 Sum_probs=139.5
Q ss_pred CCCcc---ceeEEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCC
Q 043745 3 QPRLG---KLCDFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNI 76 (174)
Q Consensus 3 ~pt~g---~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~ 76 (174)
.||+| +.+.+.+ .|..+.+++|||+||++|++....||++.-++++|||++|.+||+.++.|+.+...+.. ..+
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~ 117 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKV 117 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCee
Confidence 57777 4444444 78899999999999999999999999999999999999999999999999999766654 345
Q ss_pred eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCCCCCCC
Q 043745 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEP--APSNIKEGQ 154 (174)
Q Consensus 77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~--~~~~~~~~~ 154 (174)
-++||++|.||...++++.+++++++..+|+.++++||++|.|+++.|..+.+.+...+.......... ..++.++|+
T Consensus 118 VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~ 197 (213)
T KOG0091|consen 118 VFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQ 197 (213)
T ss_pred EEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCc
Confidence 577899999999999999999999999999999999999999999999999999999987765554433 233344444
Q ss_pred eeEecCCCCCCCCCCCCC
Q 043745 155 TIVVGGASEANTKKPCCS 172 (174)
Q Consensus 155 ~~~~~~~~~~~~~~~c~~ 172 (174)
...+..-...++.|||
T Consensus 198 --i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 198 --IPRSPSRKQPSKPCQC 213 (213)
T ss_pred --CCCcccccCCCCCCCC
Confidence 3334455667788888
No 8
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.4e-31 Score=183.17 Aligned_cols=163 Identities=34% Similarity=0.615 Sum_probs=134.3
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
++.+.+.+....+++|||+||++|..+.+.||++++++++|||++|++||+.++.|+.+++...+..+-+++|+||+||+
T Consensus 52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 34567788889999999999999999999999999999999999999999999999999998888789999999999999
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC--CCC-CCCCCeeEecCCCCCC
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA--PSN-IKEGQTIVVGGASEAN 165 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 165 (174)
++++++.+++..+++.-|..|+++||+.+.||.++|+.+...+++.....+...++-+ |+. .+.+.-+- +..+..+
T Consensus 132 eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD-~e~~a~~ 210 (218)
T KOG0088|consen 132 EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLID-NEAEAER 210 (218)
T ss_pred HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccC-CCccccc
Confidence 9999999999999999999999999999999999999999988887655544443222 222 22222222 2224555
Q ss_pred CCCCCCC
Q 043745 166 TKKPCCS 172 (174)
Q Consensus 166 ~~~~c~~ 172 (174)
++++||.
T Consensus 211 sg~~CC~ 217 (218)
T KOG0088|consen 211 SGKRCCR 217 (218)
T ss_pred ccCCccC
Confidence 6666664
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.9e-31 Score=180.49 Aligned_cols=153 Identities=41% Similarity=0.721 Sum_probs=132.9
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
+.+++.++|..+.+++||++|+++|+.+...||++.+++++|||+++.+||.++++|+++++..++ .+|-++|+||.|+
T Consensus 46 kirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 46 KIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDD 124 (198)
T ss_pred EEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCC
Confidence 566788999999999999999999999999999999999999999999999999999999998886 7999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCC
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 167 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (174)
++++.+..++++.|+..+|++.|++||+..+|++..|.-|.+++++..........+. ...+=++.+.++
T Consensus 125 ~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~----------~~~~l~~n~~~~ 194 (198)
T KOG0079|consen 125 PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRA----------DAVSLKDNSKST 194 (198)
T ss_pred ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhh----------cceEeccCCCcc
Confidence 9999999999999999999999999999999999999999999988774332222222 222233445566
Q ss_pred CCCC
Q 043745 168 KPCC 171 (174)
Q Consensus 168 ~~c~ 171 (174)
++||
T Consensus 195 ~k~c 198 (198)
T KOG0079|consen 195 KKCC 198 (198)
T ss_pred ccCC
Confidence 6887
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=3.7e-30 Score=188.78 Aligned_cols=132 Identities=37% Similarity=0.746 Sum_probs=119.8
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.++||||+|+++|+.++..|++++|++|+|||+++++||+.+..|+..+......++|+++
T Consensus 31 ~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piil 110 (202)
T cd04120 31 SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 110 (202)
T ss_pred CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 6666 4557788999999999999999999999999999999999999999999999999999988776556799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+||.+.+++..++++++++++ ++.++++||++|.|++++|+++++.+...+
T Consensus 111 VgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 111 VGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred EEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999877888899999999885 789999999999999999999999887653
No 11
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=181.03 Aligned_cols=130 Identities=42% Similarity=0.710 Sum_probs=123.3
Q ss_pred Ccc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 5 RLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 5 t~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
|+| +.|.+.++|+++.+-+|||+||++|+.+.+.||++|.++|+|||++.+++|..+..|+.++..+.. +++-.++
T Consensus 43 tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml 122 (209)
T KOG0080|consen 43 TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML 122 (209)
T ss_pred eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhh
Confidence 477 888999999999999999999999999999999999999999999999999999999999988876 6778899
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
|+||+|.+..+.++.+++..||+++++-++++||++.+|+...|+.++.+|++-
T Consensus 123 VgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 123 VGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred hcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 999999988899999999999999999999999999999999999999998864
No 12
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-30 Score=175.88 Aligned_cols=135 Identities=39% Similarity=0.716 Sum_probs=126.3
Q ss_pred Ccc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 5 RLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 5 t~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
|+| +.|++--+.+++.+++|||+|+++|+.+...||++++++|++||++|.+||..+..|...|..+.-.+.|+|++
T Consensus 53 TvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilv 132 (193)
T KOG0093|consen 53 TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILV 132 (193)
T ss_pred eeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEE
Confidence 666 66666667788999999999999999999999999999999999999999999999999999888789999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
+||+|+..+|.++.+.++.++.++|.++|++||+.+.|++++|+.++..|.+.+.+..
T Consensus 133 gnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 133 GNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred ecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999886653
No 13
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=2.7e-29 Score=180.67 Aligned_cols=133 Identities=32% Similarity=0.613 Sum_probs=119.9
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+......++|++
T Consensus 10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~pii 89 (176)
T PTZ00099 10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIA 89 (176)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 48998 456778899999999999999999999999999999999999999999999999999999876554578999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
||+||+||...+.+..+++..++..++..++++||+++.|++++|+++++.+....
T Consensus 90 lVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 90 LVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999876778888899999988999999999999999999999999876643
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=3.2e-29 Score=182.12 Aligned_cols=132 Identities=39% Similarity=0.717 Sum_probs=120.1
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| +++.+.+++..+.++||||+|+++|..++..+++++|++|||||++++++|+.+..|+..+....+ ++|+||
T Consensus 37 ~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piil 115 (189)
T cd04121 37 YNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKIL 115 (189)
T ss_pred CcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 4555 455677899999999999999999999999999999999999999999999999999999977654 799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
||||.||...+.++.++++.+++..+++++++||++|.|++++|+++++.+....+
T Consensus 116 VGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred EEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999998878889999999999999999999999999999999999998876544
No 15
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.9e-28 Score=181.76 Aligned_cols=167 Identities=69% Similarity=1.040 Sum_probs=134.0
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.++|||++|+++|..++..++++++++|+|||+++.++|+.+..|+..+......++|+++
T Consensus 43 ~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piii 122 (216)
T PLN03110 43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 122 (216)
T ss_pred CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 6666 3456778888999999999999999999999999999999999999999999999999998877656799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCCeeEe
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP--SNIKEGQTIVV 158 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 158 (174)
|+||+|+...+.+..++.+.++...+++++++||+++.|++++|++++..+.+....+......... ..+..++.+..
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (216)
T PLN03110 123 AGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV 202 (216)
T ss_pred EEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc
Confidence 9999999877788888999999999999999999999999999999999998876544433333222 22222333333
Q ss_pred cCCCCCCCCCCCC
Q 043745 159 GGASEANTKKPCC 171 (174)
Q Consensus 159 ~~~~~~~~~~~c~ 171 (174)
... ....+++||
T Consensus 203 ~~~-~~~~~~~~c 214 (216)
T PLN03110 203 ADT-SGNNKRGCC 214 (216)
T ss_pred cCc-cCCCCCCCc
Confidence 222 344556665
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.2e-28 Score=182.48 Aligned_cols=133 Identities=23% Similarity=0.463 Sum_probs=117.8
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.++||||+|++.|..++..+|+++|++|+|||++++++|+.+ ..|+..+....+ +.|++|
T Consensus 44 pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piil 122 (232)
T cd04174 44 PTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILL 122 (232)
T ss_pred CceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 6776 444567899999999999999999999999999999999999999999999985 899999987654 789999
Q ss_pred EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCC-CHHHHHHHHHHHHHHHHhh
Q 043745 81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAI-NVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~v~~~l~~~i~~~~~~ 137 (174)
|+||+||.+ .+.++.+++++++.++++ .|++|||++|. |++++|..++..+++....
T Consensus 123 VgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 123 IGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred EEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 999999964 257889999999999998 69999999998 8999999999998875433
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=3.8e-29 Score=174.95 Aligned_cols=134 Identities=39% Similarity=0.676 Sum_probs=121.9
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCC
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNI 76 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~ 76 (174)
.|+| -+|++.++++.+.+++|||+||++|.++...+|+++|.+++|||+.+.+||+.+..|..++..+.. ...
T Consensus 40 aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~F 119 (210)
T KOG0394|consen 40 ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETF 119 (210)
T ss_pred cccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcc
Confidence 4666 677899999999999999999999999999999999999999999999999999999999865543 569
Q ss_pred eEEEEEeCCCCCCc--cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 77 VIMMIGNKTDLKHL--RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 77 piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
|+||+|||+|+... ++++...++.|+...| ++|||+||+...|+++.|+.+.+.++.....
T Consensus 120 PFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 120 PFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 99999999999763 7899999999998876 8999999999999999999999999987654
No 18
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=9.4e-29 Score=183.39 Aligned_cols=146 Identities=29% Similarity=0.522 Sum_probs=120.4
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC-------
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH------- 89 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~------- 89 (174)
..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+......++|+|||+||+||.+
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence 4577999999999999999999999999999999999999999999888877665445799999999999965
Q ss_pred ------------ccCCCHHHHHHHHHHhC--------------CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745 90 ------------LRAVATEDAQSYAEREG--------------LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 143 (174)
Q Consensus 90 ------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~ 143 (174)
.+.+..++++.++++.+ ++|+++||++|.|++++|..+++.++....+...+.+
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~ 201 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN 201 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57888999999999876 6899999999999999999999999987766643211
Q ss_pred CCCCCCCCCCCeeEecCCCCCCCCCCCC
Q 043745 144 EPAPSNIKEGQTIVVGGASEANTKKPCC 171 (174)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 171 (174)
.... .........++++||
T Consensus 202 -------~~~~--~~~~~~~~~~~~~~~ 220 (220)
T cd04126 202 -------RTQG--TVNLPNPKRSKSKCC 220 (220)
T ss_pred -------hhhc--cccCCCcccCCCCCC
Confidence 1111 112334666777887
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6.2e-28 Score=177.03 Aligned_cols=162 Identities=33% Similarity=0.611 Sum_probs=128.3
Q ss_pred CCcc---ceeEEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCC
Q 043745 4 PRLG---KLCDFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA----DSN 75 (174)
Q Consensus 4 pt~g---~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~ 75 (174)
||+| ..+.+.++ +..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.... ..+
T Consensus 31 ~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~ 110 (201)
T cd04107 31 ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEP 110 (201)
T ss_pred CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 5665 23455666 788999999999999999999999999999999999999999999999998876532 247
Q ss_pred CeEEEEEeCCCCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 043745 76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ 154 (174)
Q Consensus 76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
+|++||+||+|+.+.+.+..+++.++++..+ ..++++||+++.|++++|+++++.+...........+... ..
T Consensus 111 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~------~~ 184 (201)
T cd04107 111 IPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPED------GS 184 (201)
T ss_pred CcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCc------cc
Confidence 8999999999998666788899999999998 6899999999999999999999998876443332222211 22
Q ss_pred eeEecCCCCCCCCCCCC
Q 043745 155 TIVVGGASEANTKKPCC 171 (174)
Q Consensus 155 ~~~~~~~~~~~~~~~c~ 171 (174)
.+.....+....+++||
T Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 185 VIDLKQTTTKKKSKGCC 201 (201)
T ss_pred ccccccceeccccCCCC
Confidence 23333445555666787
No 20
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.5e-27 Score=174.74 Aligned_cols=160 Identities=40% Similarity=0.711 Sum_probs=128.6
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+++.+++..+.+.|||++|++.|..++..+++++|++++|||++++++|+.+..|+..+..... ..|+++
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piiv 115 (199)
T cd04110 37 TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVL 115 (199)
T ss_pred ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5555 234556678888999999999999999999999999999999999999999999999999876553 789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEecC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGG 160 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (174)
|+||+|+.+.+.+..++...++..++++++++||+++.|++++|+++.+.++....+...............+
T Consensus 116 VgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 188 (199)
T cd04110 116 VGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKL------- 188 (199)
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCcc-------
Confidence 9999999877777888899999999999999999999999999999999998765444322222222222222
Q ss_pred CCCCCCCCCCC
Q 043745 161 ASEANTKKPCC 171 (174)
Q Consensus 161 ~~~~~~~~~c~ 171 (174)
.-.++++++||
T Consensus 189 ~~~~~~~~~~~ 199 (199)
T cd04110 189 PKNSKRKKRCC 199 (199)
T ss_pred chhccccccCC
Confidence 23456778888
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1.2e-27 Score=174.02 Aligned_cols=128 Identities=36% Similarity=0.564 Sum_probs=113.8
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIMMIGNKTD 86 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~D 86 (174)
+.+.+++..+.++||||+|+++|..++..+++++|++|+|||+++.++|+.+..|+..+..... .+.|+++|+||+|
T Consensus 38 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~D 117 (190)
T cd04144 38 KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCD 117 (190)
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence 3556788889999999999999999999999999999999999999999999999988866542 4689999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
+...+.+...+..+++..++++++++||+++.|++++|+++++.+......
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 118 KVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred ccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 987777888888999999999999999999999999999999887655444
No 22
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.8e-27 Score=174.12 Aligned_cols=162 Identities=38% Similarity=0.645 Sum_probs=127.9
Q ss_pred EEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 11 DFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
.+.+ ++..+.+++|||+|++.|..++..+++++|++++|||++++++|+.+..|+..+..... ...|++||+||.|+.
T Consensus 43 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 43 LIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 4444 56678999999999999999999999999999999999999999999999999876543 457899999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC----CCCCCCCe-eEecCCCC
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP----SNIKEGQT-IVVGGASE 163 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~ 163 (174)
+.+.+..++...+++.++++++++||+++.|++++|+++++.+.+.+.....+....-. ..++...= ..--+...
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
T cd04111 123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTF 202 (211)
T ss_pred cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccc
Confidence 77788889999999999999999999999999999999999998886655433333321 11111111 11122345
Q ss_pred CCCCCCCCC
Q 043745 164 ANTKKPCCS 172 (174)
Q Consensus 164 ~~~~~~c~~ 172 (174)
+...++|||
T Consensus 203 ~~~~~~~~~ 211 (211)
T cd04111 203 ASPEKSCCC 211 (211)
T ss_pred cCCCCCCCC
Confidence 566778887
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=7.6e-28 Score=174.02 Aligned_cols=129 Identities=25% Similarity=0.534 Sum_probs=115.6
Q ss_pred CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|++
T Consensus 35 ~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~pii 113 (182)
T cd04172 35 VPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKML 113 (182)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEE
Confidence 36777 455678899999999999999999999999999999999999999999999998 799999987764 79999
Q ss_pred EEEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIY 132 (174)
Q Consensus 80 lv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~ 132 (174)
||+||.||.+ .+.++.++++++++++++ +|++|||+++.| ++++|..+++.++
T Consensus 114 lVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 114 LVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 9999999964 246889999999999995 899999999998 9999999998654
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1e-27 Score=174.62 Aligned_cols=130 Identities=26% Similarity=0.540 Sum_probs=113.6
Q ss_pred CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+++|||+|+++|+.++..+++++|++|+|||+++++||+.+. .|+..+..... ++|++
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~pii 111 (191)
T cd01875 33 IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPIL 111 (191)
T ss_pred CCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEE
Confidence 37777 3445678999999999999999999999999999999999999999999999996 69887776544 79999
Q ss_pred EEEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 80 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
||+||.||.+. +.+..++++.++++++ ++++++||++|.|++++|+++++.+..
T Consensus 112 lvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 112 LVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999653 2367788999999998 689999999999999999999988754
No 25
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=6.6e-28 Score=173.43 Aligned_cols=127 Identities=31% Similarity=0.579 Sum_probs=114.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+|||+|+++|..++..+++++|++|+|||+++++||+.+ ..|+..+..... ++|++|
T Consensus 32 ~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piil 110 (176)
T cd04133 32 PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVL 110 (176)
T ss_pred CcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 6777 444567899999999999999999999999999999999999999999999998 689999877654 799999
Q ss_pred EEeCCCCCCcc----------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLR----------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
||||.||.+.+ .++.++++.+++..+. .+++|||+++.|++++|+.+++.+
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 111 VGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 99999996543 4888999999999998 599999999999999999999875
No 26
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=7.4e-29 Score=165.43 Aligned_cols=131 Identities=41% Similarity=0.742 Sum_probs=122.6
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.|+| ..|.+.+++.++.+++|||+||++|++....||+++|+++++||+.+..||+++..|+.+|..+....+-+++
T Consensus 29 stvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~l 108 (192)
T KOG0083|consen 29 STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALML 108 (192)
T ss_pred eeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhh
Confidence 3566 5667788999999999999999999999999999999999999999999999999999999998887899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
++||+|+..++.+..++++.+++..++|++++||++|.|++-.|-.+.+.+.++
T Consensus 109 lgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 109 LGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred hccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 999999988899999999999999999999999999999999999999887765
No 27
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-28 Score=165.95 Aligned_cols=137 Identities=38% Similarity=0.684 Sum_probs=125.3
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.|+| -.|++.++|.++.+++|||+|+++|++....||+.++++|+|||++..++|+-+++|+.+|.++....+--|+
T Consensus 38 atigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkil 117 (213)
T KOG0095|consen 38 ATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKIL 117 (213)
T ss_pred ceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEe
Confidence 4556 4567889999999999999999999999999999999999999999999999999999999998887788899
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL 140 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~ 140 (174)
|+||+|+.+++++..+.+++|.+....-++++||+...|++.+|..+.-.+.........
T Consensus 118 vgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 118 VGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQNDL 177 (213)
T ss_pred eccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999989999999999999999999998887776655544
No 28
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5.6e-27 Score=170.13 Aligned_cols=155 Identities=37% Similarity=0.650 Sum_probs=129.7
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+.+||++|++.|..++..+++++|++|||||++++++|..+..|+..+........|++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~i 109 (188)
T cd04125 30 KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKV 109 (188)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 35666 234667788889999999999999999999999999999999999999999999999999887765568999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEec
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVG 159 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (174)
+++||.|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.+..+..... .++ .
T Consensus 110 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~----------~~~------~ 173 (188)
T cd04125 110 IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE----------LSP------K 173 (188)
T ss_pred EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc----------CCc------c
Confidence 999999998777788888899999899999999999999999999999999886543331 111 2
Q ss_pred CCCCCCCCCCCCCC
Q 043745 160 GASEANTKKPCCSS 173 (174)
Q Consensus 160 ~~~~~~~~~~c~~~ 173 (174)
......+++.||.+
T Consensus 174 ~~~~~~~~~~~~~~ 187 (188)
T cd04125 174 NIKQQFKKKNNCFI 187 (188)
T ss_pred ccccccccccCccc
Confidence 34556677777764
No 29
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-27 Score=159.24 Aligned_cols=136 Identities=48% Similarity=0.788 Sum_probs=126.4
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
-++.+.+.|+++.+++|||+|+++|+...+.||+++-+.+.|||++.+.+++.+..|+...+....++.-|++++||.||
T Consensus 49 gtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 49 GTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred ceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh
Confidence 45567789999999999999999999999999999999999999999999999999999988887788899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 143 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~ 143 (174)
+..+++..++.++|+++.|+-++++||++|+|+++.|-...++|++..++...-..
T Consensus 129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdgsldln 184 (215)
T KOG0097|consen 129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDLN 184 (215)
T ss_pred hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCccccc
Confidence 99999999999999999999999999999999999999999999998877755433
No 30
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.4e-27 Score=170.12 Aligned_cols=128 Identities=24% Similarity=0.520 Sum_probs=114.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||+| +.+.+.+++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|++|
T Consensus 32 ~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iil 110 (178)
T cd04131 32 PTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLL 110 (178)
T ss_pred CceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEE
Confidence 6766 445677899999999999999999999999999999999999999999999996 899999987764 799999
Q ss_pred EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHH
Q 043745 81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~ 132 (174)
|+||.||.+ .+.+..++++++++++++ .|+++||++|+| ++++|..+++..+
T Consensus 111 VgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 111 VGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 999999964 245889999999999996 799999999995 9999999998644
No 31
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=2.7e-26 Score=169.44 Aligned_cols=136 Identities=49% Similarity=0.826 Sum_probs=120.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|||+++.++|..+..|+..+........|+++
T Consensus 37 ~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piii 116 (210)
T PLN03108 37 LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML 116 (210)
T ss_pred CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 5555 2345678888899999999999999999999999999999999999999999999999888766555799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
++||.|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+++...+..
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~~~~ 175 (210)
T PLN03108 117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGV 175 (210)
T ss_pred EEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 99999998877888899999999999999999999999999999999999988765443
No 32
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-27 Score=161.09 Aligned_cols=133 Identities=46% Similarity=0.724 Sum_probs=124.5
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
-++.+.+.++.+.+++|||+||++|++..+.||+++-+.++|||++++++|+.+..|+..++...++++-+++++||.||
T Consensus 47 gSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 47 GSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred cceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence 45567889999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCC
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSL 140 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~ 140 (174)
.+.++++..++..|+.+..+-++++||++|+|+++.|-...+.|+.+....+.
T Consensus 127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL 179 (214)
T ss_pred ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999988655443
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=8.1e-27 Score=167.23 Aligned_cols=130 Identities=29% Similarity=0.458 Sum_probs=116.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||+| ..+.+.+++..+.++||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.+... .++|+++
T Consensus 33 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piil 112 (172)
T cd04141 33 PTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVL 112 (172)
T ss_pred CcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 5665 333567889899999999999999999999999999999999999999999999999888766432 5799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||.|+...+.++.++++.+++.++++++++||+++.|++++|+++++.+.+
T Consensus 113 vgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 113 VGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999998777888899999999999999999999999999999999988776
No 34
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2e-26 Score=167.77 Aligned_cols=125 Identities=44% Similarity=0.768 Sum_probs=114.0
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.||||+|+++|...+..+++++|++|+|||+++.++|+.+..|+..+......++|+++|+||+|+...
T Consensus 42 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 42 VVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE 121 (191)
T ss_pred EEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc
Confidence 45678888999999999999999999999999999999999999999999999999988776567999999999999766
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+.+..++.+.++..++.+++++||+++.|++++|+++++.+....
T Consensus 122 ~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 777788899999999999999999999999999999999987653
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=1.6e-26 Score=164.42 Aligned_cols=124 Identities=49% Similarity=0.846 Sum_probs=113.6
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+++..+.+.+||++|+++|...+..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||+|+.+
T Consensus 42 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 42 RIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 34567888999999999999999999999999999999999999999999999999988776556789999999999988
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.+.+..+++++++...+++++++||+++.|++++|.++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 122 QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 77888899999999999999999999999999999999988754
No 36
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-27 Score=162.43 Aligned_cols=124 Identities=43% Similarity=0.737 Sum_probs=114.7
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~ 94 (174)
+.++.+++|||+||++|+++...||++|-+++++||+++.+||.++..|+.+++.+.- ++.-|++++||.||++.+.++
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 3467899999999999999999999999999999999999999999999999976654 466799999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 95 TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
..++..+++++|+|||++||-+|.|+++..+.++..+++++..--
T Consensus 144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876543
No 37
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=3.1e-26 Score=167.76 Aligned_cols=129 Identities=30% Similarity=0.561 Sum_probs=112.7
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+.||||+|+++|..++..+|+++|++|+|||++++.+|..+..|+..+..... ++|++
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~pii 103 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIV 103 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 36777 345667788999999999999999999999999999999999999999999999999999987654 79999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
||+||+|+.. +.+..+. ..++...++.++++||+++.|++++|+++++.+...
T Consensus 104 lvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 104 LCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred EEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999965 4455444 467788889999999999999999999999988664
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=4.9e-26 Score=169.00 Aligned_cols=131 Identities=23% Similarity=0.466 Sum_probs=113.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||++ +.+.+.+++..+.|.||||+|++.|..++..+|+++|++|+|||++++++|+.+ ..|...+.... +++|++|
T Consensus 32 pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiL 110 (222)
T cd04173 32 PTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVL 110 (222)
T ss_pred CccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEE
Confidence 7777 445677899999999999999999999999999999999999999999999999 56877776554 4799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~~~~ 135 (174)
|+||+||.+. ..++.++++.++++.+. .|+||||+++.+ ++++|..++...+.+.
T Consensus 111 VgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 111 VGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred EEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence 9999999642 13778899999999995 899999999985 9999999999877654
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=165.33 Aligned_cols=133 Identities=32% Similarity=0.546 Sum_probs=117.1
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||+| +.+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+..|+..+..... .++|+++
T Consensus 36 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piii 115 (189)
T PTZ00369 36 PTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMIL 115 (189)
T ss_pred CchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 5555 334567889899999999999999999999999999999999999999999999999998876543 4789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
|+||.|+.+.+.+..++...++..++++++++||+++.|++++|+++++.+.+...
T Consensus 116 v~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 116 VGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred EEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999997767778888888998889999999999999999999999998876544
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=8e-26 Score=167.52 Aligned_cols=131 Identities=29% Similarity=0.504 Sum_probs=114.8
Q ss_pred CCcc---ceeEEEECC-eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCC
Q 043745 4 PRLG---KLCDFQVEG-RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNI 76 (174)
Q Consensus 4 pt~g---~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~ 76 (174)
||+| ..+.+.+++ ..+.++|||++|++.|..++..+++++|++|||||++++++|+.+..|+..+..... .+.
T Consensus 31 ~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~ 110 (215)
T cd04109 31 QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQP 110 (215)
T ss_pred CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCc
Confidence 5555 234556644 578999999999999999999999999999999999999999999999999877643 357
Q ss_pred eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+++++.+...
T Consensus 111 piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 111 LVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999987778888899999999999999999999999999999999988764
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=6.6e-26 Score=160.73 Aligned_cols=127 Identities=35% Similarity=0.698 Sum_probs=114.7
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+||++|+++|..++..+++++|++++|||++++++|+.+..|+..+......+.|+++
T Consensus 31 ~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd04117 31 STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKIL 110 (161)
T ss_pred CceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 5666 2346677888899999999999999999999999999999999999999999999999998776655799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
|+||.|+.+.+.+..+++..+++.++.+++++||+++.|++++|.+|++.
T Consensus 111 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 111 IGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999998878888899999999999999999999999999999999864
No 42
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=9.8e-26 Score=159.45 Aligned_cols=129 Identities=35% Similarity=0.729 Sum_probs=120.8
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+.+||++|+++|..++..+++++|++|+|||+++++||+.+..|+..+......+.|++|
T Consensus 30 ~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iiv 109 (162)
T PF00071_consen 30 PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIV 109 (162)
T ss_dssp TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 6776 5667888999999999999999999999999999999999999999999999999999999888776799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
++||.|+.+.+.++.++++.++.+++.+++++||+++.|+.++|..+++.+.
T Consensus 110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999987899999999999999999999999999999999999999875
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=3.7e-26 Score=164.25 Aligned_cols=127 Identities=24% Similarity=0.469 Sum_probs=111.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|||||++++++|+.+. .|+..+....+ ++|+++
T Consensus 32 pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piil 110 (175)
T cd01874 32 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLL 110 (175)
T ss_pred CceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 6776 3345678888899999999999999999999999999999999999999999996 59888876553 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||.|+... +.+..+++++++++.+ +.++++||++|.|++++|+.++..+
T Consensus 111 vgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 111 VGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999998643 5677888999998887 6899999999999999999998754
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=1.4e-25 Score=159.83 Aligned_cols=130 Identities=45% Similarity=0.874 Sum_probs=115.9
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|..+..|+..+......++|+++
T Consensus 34 ~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ii 113 (167)
T cd01867 34 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERML 113 (167)
T ss_pred cCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEE
Confidence 4555 2335567888899999999999999999999999999999999999999999999999998876555799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++.+.+..
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 114 VGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999998777778888999999999999999999999999999999998764
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=1.4e-25 Score=159.57 Aligned_cols=123 Identities=40% Similarity=0.738 Sum_probs=111.5
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
++..++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+........|+++|+||+|+.+.
T Consensus 42 ~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 42 TVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 45567788999999999999999999999999999999999999999999999999987766557899999999999877
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+..++...++..++++++++||+++.|++++|++++..+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 122 RVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred cccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7777888888999999999999999999999999999987653
No 46
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1e-25 Score=163.76 Aligned_cols=129 Identities=30% Similarity=0.536 Sum_probs=110.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.++|||++|++.|..++..++.++|++|+|||++++++|+.+. .|+..+..... +.|+++
T Consensus 31 ~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piil 109 (189)
T cd04134 31 PTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVL 109 (189)
T ss_pred CcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5665 3345567888899999999999999999999999999999999999999999986 69988876554 799999
Q ss_pred EEeCCCCCCcc------------CCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLR------------AVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+||.+.+ .+..+++..++...+ +.++++||+++.|++++|+++++.+..
T Consensus 110 vgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 110 VALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 99999996543 355677888888877 789999999999999999999988863
No 47
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=1.3e-25 Score=161.65 Aligned_cols=119 Identities=43% Similarity=0.768 Sum_probs=108.7
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~ 94 (174)
+..+.+.|||++|+++|..++..+++++|++++|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 4568899999999999999999999999999999999999999999999999876542 468999999999998777788
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+++.+++..++++++++||+++.|++++|+++++.+.++
T Consensus 140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999888754
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=4.7e-25 Score=160.53 Aligned_cols=134 Identities=34% Similarity=0.579 Sum_probs=114.7
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... +.|+++
T Consensus 32 ~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piil 110 (193)
T cd04118 32 NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYL 110 (193)
T ss_pred cceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEE
Confidence 4555 234677888899999999999999999999999999999999999999999999999999876543 789999
Q ss_pred EEeCCCCCCc----cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 81 IGNKTDLKHL----RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 81 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
|+||.|+.+. +.+..+++..++...+++++++||+++.|++++|+++++.+.++..++
T Consensus 111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~ 172 (193)
T cd04118 111 CGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQ 172 (193)
T ss_pred EEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999998532 355667788888888999999999999999999999999998765433
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.94 E-value=1.4e-25 Score=162.21 Aligned_cols=130 Identities=25% Similarity=0.478 Sum_probs=111.2
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|+.+..|+..+........| +
T Consensus 30 ~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i 108 (182)
T cd04128 30 IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I 108 (182)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E
Confidence 37887 3357788999999999999999999999999999999999999999999999999999998776554566 6
Q ss_pred EEEeCCCCCC-----ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKH-----LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 80 lv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+|+||+|+.. .+....++.+.+++.++++++++||+++.|++++|+++++.+..
T Consensus 109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7899999952 11223466788888889999999999999999999999988865
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.94 E-value=2.4e-25 Score=158.24 Aligned_cols=125 Identities=50% Similarity=0.843 Sum_probs=113.3
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++++|..+..|+..+......+.|+++++||.|+.
T Consensus 41 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 41 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 34566788889999999999999999999999999999999999999999999999999877654578999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..+.+..+++..++..++++++++||+++.|++++|+++++.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 121 DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 777788889999999999999999999999999999999988753
No 51
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=1.6e-25 Score=158.89 Aligned_cols=129 Identities=30% Similarity=0.528 Sum_probs=112.9
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil 80 (174)
||++ ..+.+.+++..+.+.+|||+|++.|..++..+++++|++++|||+++.++|+.+..|+..+.... ..+.|+++
T Consensus 32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 111 (164)
T cd04175 32 PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 111 (164)
T ss_pred CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4555 23456778889999999999999999999999999999999999999999999999999886543 25799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+...+.+..++...+++.++++++++||+++.|++++|.++++.+.
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 112 VGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 9999999876677777888889889999999999999999999999987653
No 52
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=7.3e-25 Score=161.88 Aligned_cols=125 Identities=42% Similarity=0.695 Sum_probs=109.6
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHAD-SNIVIMMIGNKTDL 87 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~piilv~nK~Dl 87 (174)
+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|..+.. |...+..... .+.|+++|+||+|+
T Consensus 53 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 53 KQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 345678888999999999999999999999999999999999999999999965 6666554332 46899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
...+.+..++...++..+++.++++||+++.|++++|+++.+.+...
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 87677778888889998999999999999999999999999998764
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=2.2e-25 Score=158.96 Aligned_cols=124 Identities=52% Similarity=0.885 Sum_probs=112.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+++..+.+.+||++|+++|..++..+++++|+++||||++++++++.+..|+..+..+...+.|+++|+||.|+.+
T Consensus 44 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 44 RMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 34567888899999999999999999999999999999999999999999999999998776555799999999999986
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.+.+..++++.++...+++++++||+++.|++++|.++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 124 RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 66788888999999999999999999999999999999988754
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=1.9e-25 Score=157.90 Aligned_cols=122 Identities=32% Similarity=0.570 Sum_probs=109.2
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.++||||+|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .+.|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 40 KQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4566788889999999999999999999999999999999999999999999999998876543 478999999999997
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+.+..++...+++.++.+++++||+++.|++++|+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 120 DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 7667777888888888889999999999999999999998754
No 55
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.3e-25 Score=163.93 Aligned_cols=115 Identities=23% Similarity=0.496 Sum_probs=102.6
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC--
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH-- 89 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-- 89 (174)
.+++..+.++||||+|++. .+...+|+++|++|+|||+++++||+.+. .|+..+..... +.|+++|+||+||..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~ 136 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYAD 136 (195)
T ss_pred eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 5789999999999999986 35667899999999999999999999996 69998876653 789999999999964
Q ss_pred -----------------ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 90 -----------------LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 90 -----------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+.++.+++++++++++++|++|||++|.|++++|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788999999999999999999999999999999998864
No 56
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=5.2e-25 Score=159.47 Aligned_cols=126 Identities=35% Similarity=0.595 Sum_probs=109.2
Q ss_pred EEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 11 DFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+... +..+.+.||||+|+++|..++..+++++|++++|||++++++|+.+. .|+..+.... .++|+++|+||.|+.
T Consensus 40 ~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 118 (187)
T cd04132 40 NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhh
Confidence 34444 77889999999999999999999999999999999999999999995 5988876654 379999999999996
Q ss_pred Cc----cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 89 HL----RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 89 ~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
.. +.+..++.++++..+++ +++++||+++.|++++|+.+++.+...+..
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 119 KDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred hCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 53 35677889999999998 899999999999999999999998876533
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.94 E-value=2.5e-25 Score=159.83 Aligned_cols=126 Identities=28% Similarity=0.556 Sum_probs=109.5
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.+|||+|++.|..++..+++++|++|||||++++++|+.+. .|+..+.... .++|+++
T Consensus 32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piil 110 (174)
T cd01871 32 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 110 (174)
T ss_pred CcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 5555 3345678888999999999999999999999999999999999999999999995 6888876654 3799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
|+||.|+.+. +.+..+++++++++++ ++++++||++|.|++++|+.+++.
T Consensus 111 vgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 111 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 9999999542 3578899999999998 489999999999999999998864
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=2.7e-25 Score=157.11 Aligned_cols=121 Identities=50% Similarity=0.824 Sum_probs=110.9
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+++..+.++|||++|++.|..++..+++++|++++|||+++++++..+..|+..+......++|+++++||.|+..
T Consensus 40 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 40 KIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 34567888899999999999999999999999999999999999999999999999988766656899999999999987
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+.+..++...++..+++.++++||+++.|++++|+++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 120 QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 77788889999999999999999999999999999999875
No 59
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=1.9e-25 Score=159.82 Aligned_cols=121 Identities=31% Similarity=0.607 Sum_probs=107.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+++.++|+.+. .|+..+....+ ++|+++|+||+|+..
T Consensus 38 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~ 116 (174)
T smart00174 38 DVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLRE 116 (174)
T ss_pred EEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhh
Confidence 5567888899999999999999999999999999999999999999999995 69998877654 799999999999965
Q ss_pred c------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 90 L------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 90 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
. +.+..++++.++..++. .++++||+++.|++++|+.+++.++
T Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 117 DKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred ChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 2 23777888999999986 8999999999999999999998875
No 60
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=5.3e-25 Score=163.53 Aligned_cols=129 Identities=32% Similarity=0.580 Sum_probs=110.7
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||+| ..+.+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|..+..|+..+..... ++|++
T Consensus 43 ~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~pii 121 (219)
T PLN03071 43 EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIV 121 (219)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEE
Confidence 36666 233455677889999999999999999999999999999999999999999999999999987654 79999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
||+||+|+.. +.+..+++ .++...+++++++||+++.|++++|+++++.+...
T Consensus 122 lvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 122 LCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred EEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999965 34445555 67777889999999999999999999999988654
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=5.4e-25 Score=155.95 Aligned_cols=123 Identities=36% Similarity=0.610 Sum_probs=109.3
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.+.+|||+|+++|..++..+++++|++++|||++++++|+.+..|...+..... .+.|+++|+||+|+.
T Consensus 39 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 39 KQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3456788889999999999999999999999999999999999999999999999888765433 478999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+.+.+..++...++..++.+++++||+++.|++++|+++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 76677778888899989999999999999999999999988754
No 62
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=1.1e-24 Score=154.46 Aligned_cols=124 Identities=34% Similarity=0.658 Sum_probs=111.4
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCeEEEEEe
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-----SNIVIMMIGN 83 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piilv~n 83 (174)
.+.+.+++..+.++||||+|++.|..++..+++++|++|+|||++++++++.+..|+..+..... .+.|+++|+|
T Consensus 39 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 118 (168)
T cd04119 39 VKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCAN 118 (168)
T ss_pred EEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEE
Confidence 34566788899999999999999999999999999999999999999999999999999876643 4689999999
Q ss_pred CCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 84 KTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 84 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|.|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.++
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 119 KIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred chhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999765677888888899989999999999999999999999998875
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=7.2e-25 Score=155.25 Aligned_cols=122 Identities=26% Similarity=0.487 Sum_probs=108.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.++||||+|+++|..++..+++++|++++|||++++++|+++..|+..+..... .++|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 40 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 3567788888999999999999999999999999999999999999999999999888876532 579999999999997
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..+.+...+...++..++++++++||+++.|++++|.++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 6667777788888888889999999999999999999998653
No 64
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=9.7e-25 Score=154.36 Aligned_cols=123 Identities=57% Similarity=0.982 Sum_probs=111.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.+||++|++.|...+..+++++|++++|||+++.++++.+..|+..+..+...++|+++++||+|+...
T Consensus 41 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 41 TIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 45677888899999999999999999999999999999999999999999999999987776558999999999999876
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+++..+..+.+++..+++++++||+++.|++++|+++.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 6778888889999899999999999999999999999988754
No 65
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=1.9e-24 Score=153.40 Aligned_cols=128 Identities=73% Similarity=1.153 Sum_probs=113.9
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+.+||++|+++|..++..++++++++|+|||+++.+++..+..|+..+......++|+++
T Consensus 34 ~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~v 113 (165)
T cd01868 34 STIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIML 113 (165)
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 4554 3445667888889999999999999999999999999999999999999999999999998877655699999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||.|+...+.+..++...++...++.++++||+++.|++++|++++..+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 114 VGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 999999987777888888999988899999999999999999999998765
No 66
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.93 E-value=1.7e-24 Score=154.89 Aligned_cols=130 Identities=30% Similarity=0.594 Sum_probs=111.7
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIM 79 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii 79 (174)
||+| ..+.+.+++..+.++||||+|+++|..++..+++++|++++|||+++++++..+..|+..+.... +...|++
T Consensus 31 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii 110 (170)
T cd04108 31 ATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110 (170)
T ss_pred CceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 6666 33566788889999999999999999999999999999999999999999999999999876543 3457899
Q ss_pred EEEeCCCCCCccC--CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRA--VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 80 lv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+|+||.|+.+... +..+++..++.+++.+++++||+++.|++++|+.+++.+.+
T Consensus 111 lVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 111 LVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999965433 34667788888889999999999999999999999988765
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.93 E-value=3.2e-24 Score=151.76 Aligned_cols=122 Identities=35% Similarity=0.597 Sum_probs=108.8
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.+++|||+|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .+.|+++++||+|+.
T Consensus 41 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 41 KQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 3456788889999999999999999999999999999999999999999999999988876432 478999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..+.+..++...++..++++++++||+++.|++++|+++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 121 HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 7667777888889988899999999999999999999998764
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=3.3e-24 Score=152.30 Aligned_cols=122 Identities=47% Similarity=0.834 Sum_probs=109.8
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.|||++|++.|..++..+++.+|++++|||++++++|..+..|+..+......++|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 42 MKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 34566788888999999999999999999999999999999999999999999999999977655679999999999998
Q ss_pred CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+.+++..+++..+++.++. .++++||+++.|++++|+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 122 EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 7777888889999998885 68999999999999999999865
No 69
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.93 E-value=4.3e-24 Score=150.95 Aligned_cols=119 Identities=30% Similarity=0.597 Sum_probs=107.0
Q ss_pred EEEEC--CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 11 DFQVE--GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.++ +..+.++|||++|+++|..++..+++++|++++|||++++++|..+..|+..+..... ++|+++|+||.|+.
T Consensus 41 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~ 119 (162)
T cd04106 41 QIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcc
Confidence 44555 7778999999999999999999999999999999999999999999999998876543 79999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..+.+..+++..+++.++++++++||+++.|++++|+++...
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 767788888999999999999999999999999999988753
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.93 E-value=2.5e-24 Score=152.55 Aligned_cols=120 Identities=36% Similarity=0.628 Sum_probs=104.5
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.+++.+..|+..+..... +.|+++|+||+|+...
T Consensus 41 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~ 119 (161)
T cd04124 41 NAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS 119 (161)
T ss_pred EEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh
Confidence 345688889999999999999999999999999999999999999999999999999876543 6899999999998532
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
...+...++...+++++++||+++.|++++|+.+++.+.++
T Consensus 120 ---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 120 ---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred ---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 23455667777789999999999999999999999887764
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=3.7e-24 Score=151.10 Aligned_cols=120 Identities=39% Similarity=0.728 Sum_probs=107.9
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+++||++|++.|..++..+++++|++++|||++++++|+.+..|+..+......+.|+++++||+|+...
T Consensus 41 ~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 41 TMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 45567777899999999999999999999999999999999999999999999999987655446999999999999765
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+.+..++...++...+++++++||+++.|++++|+++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 121 RQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 6777888888888889999999999999999999999764
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.93 E-value=5.2e-24 Score=151.40 Aligned_cols=120 Identities=28% Similarity=0.375 Sum_probs=106.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIMMIGNKTDL 87 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl 87 (174)
.+..++..+.+++|||+|+++|..++..+++++|++++|||+++.++++.+..|+..+..... .++|+++|+||+|+
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (165)
T cd04140 41 VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE 120 (165)
T ss_pred EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 445677888999999999999999999999999999999999999999999999887766432 46899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+.+++..+++..++...+++++++||++|.|++++|++|+..
T Consensus 121 ~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 121 SHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 8766777888888888889999999999999999999998753
No 73
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=153.22 Aligned_cols=133 Identities=32% Similarity=0.506 Sum_probs=122.0
Q ss_pred CCCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745 3 QPRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM 79 (174)
Q Consensus 3 ~pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii 79 (174)
.||++ +.+.+.+++..+.+.|+||+|++.|..+...++...|++++||+++++.||+.+..++..|.+... ..+|++
T Consensus 33 ~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Piv 112 (196)
T KOG0395|consen 33 DPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPII 112 (196)
T ss_pred CCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEE
Confidence 37777 677889999999999999999999999999999999999999999999999999999999844333 568999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+||||.|+...+.+..++++.++..++++|+|+||+.+.+++++|..+++.+....
T Consensus 113 lVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 113 LVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred EEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 99999999988999999999999999999999999999999999999999888733
No 74
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=1.2e-23 Score=148.20 Aligned_cols=121 Identities=34% Similarity=0.581 Sum_probs=107.1
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.+.+||++|+++|..++..+++++|++++|||+++.++|+.+..|+..+..... .++|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 40 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3456788888899999999999999999999999999999999999999999999888876543 478999999999997
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+ +.+...+...++..++++++++||+++.|++++|+++++.+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 120 A-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred c-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6 45667788888888899999999999999999999998654
No 75
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.92 E-value=1e-23 Score=150.42 Aligned_cols=120 Identities=40% Similarity=0.719 Sum_probs=107.0
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT 85 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~ 85 (174)
+.+.+++..+.++|||++|+++|..++..+++++|++++|||++++++++.+..|+..+..... .++|+++|+||.
T Consensus 45 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 124 (170)
T cd04116 45 KDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN 124 (170)
T ss_pred EEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence 4566789999999999999999999999999999999999999999999999999988765432 468999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
|+. .+.+..+++++++++++ .+++++||+++.|+.++|+++++.
T Consensus 125 Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 125 DIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 997 36677889999999888 479999999999999999999865
No 76
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=1.3e-23 Score=149.70 Aligned_cols=120 Identities=33% Similarity=0.635 Sum_probs=104.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+..++..+.+.+|||+|++.+..++..++..+|++|+|||+++.+++..+..|+..+..... ++|+++|+||+|+..
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~- 118 (166)
T cd00877 41 DFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD- 118 (166)
T ss_pred EEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-
Confidence 345577889999999999999999999999999999999999999999999999999987765 799999999999974
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+. .+...++...+++++++||+++.|++++|++|++.+.+
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 119 RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 3333 34456677777899999999999999999999988864
No 77
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=1.1e-23 Score=149.13 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=102.6
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD 86 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D 86 (174)
..+.+.+++..+.+.+||++|++. ..+++++|++++|||+++++||+.+..|+..+..... .++|+++|+||.|
T Consensus 36 ~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 36 FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 445678899999999999999975 3467889999999999999999999999999977653 5789999999999
Q ss_pred CC--CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 87 LK--HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 87 l~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+. ..+.+..++++.++++. ++.|++|||+++.|++++|+.+++.
T Consensus 111 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 111 ISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 85 34678888899999876 4899999999999999999998864
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.92 E-value=1.7e-23 Score=147.42 Aligned_cols=121 Identities=40% Similarity=0.755 Sum_probs=109.5
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+.+..+.+.+||++|++.+..++..+++++|++++|||+++.++++.+..|+..+......++|+++++||+|+...
T Consensus 41 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 41 TVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred EEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 45567778899999999999999999999999999999999999999999999999987776557999999999999876
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+..++..+++...+..++++||+++.|++++|+++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 77778888888888999999999999999999999998764
No 79
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=154.92 Aligned_cols=131 Identities=31% Similarity=0.580 Sum_probs=117.5
Q ss_pred CCcc--ceeEEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEE
Q 043745 4 PRLG--KLCDFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIM 79 (174)
Q Consensus 4 pt~g--~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii 79 (174)
||+- ++..+.++ |+.+.+.+|||+||++|..+++..|.++|+|+++|++.+++||.++ .+|+.++.++++ ++|+|
T Consensus 35 PTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpii 113 (198)
T KOG0393|consen 35 PTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPII 113 (198)
T ss_pred CeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEE
Confidence 5554 55677885 9999999999999999999999999999999999999999999998 689999999996 89999
Q ss_pred EEEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 80 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|||+|.||..+ ..+..+++.+++++.| ..|+||||+++.|+.++|+..++.++...
T Consensus 114 LVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 114 LVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred EEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999632 3678899999999999 68999999999999999999999987743
No 80
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=2.1e-23 Score=149.00 Aligned_cols=122 Identities=35% Similarity=0.667 Sum_probs=109.2
Q ss_pred eEEEECCeEEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL 87 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 87 (174)
+.+.+++..+.+.+||++|+++|. .++..+++++|++++|||++++++|..+..|+..+..... .++|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 42 RTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred EEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 355678888999999999999987 5789999999999999999999999999999998876543 57999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccC---CCCHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALE---AINVEKAFQTILSEI 131 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~v~~~l~~~i 131 (174)
...+.+..++.++++...+++++++||++ +.+++++|..+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 88788888899999999999999999999 889999999998765
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.92 E-value=3.7e-23 Score=146.28 Aligned_cols=129 Identities=45% Similarity=0.793 Sum_probs=115.6
Q ss_pred CCCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 3 QPRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 3 ~pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.||.| .++.+.+++..+.+.+||++|+++|...+..+++++|+++||||+++.+++..+..|+..+.......+|++
T Consensus 31 ~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 110 (163)
T cd01860 31 ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA 110 (163)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 35666 245778899999999999999999999999999999999999999999999999999999877765679999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+++||+|+...+....++...++..++++++++||+++.|++++|+++++.+
T Consensus 111 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 111 LVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999986667788888899999999999999999999999999999875
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.92 E-value=3e-23 Score=147.88 Aligned_cols=123 Identities=32% Similarity=0.549 Sum_probs=109.7
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.+++|||+|+++|..+++.+++.++++++|||++++++++.+..|...+..... .+.|+++++||.|+.
T Consensus 40 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 40 KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 3456788889999999999999999999999999999999999999999999999888865432 579999999999998
Q ss_pred CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+.+.+..++...+++..+ ++++++||+++.|++++|++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 120 DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 777777888888888888 89999999999999999999998664
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.92 E-value=3.1e-23 Score=156.46 Aligned_cols=128 Identities=21% Similarity=0.376 Sum_probs=110.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---------c
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---------A 72 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~ 72 (174)
||++ ..+.+.+++..+.++||||+|++.|..++..++..+|++|+|||+++.++|+.+..|+..+... .
T Consensus 31 pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~ 110 (247)
T cd04143 31 PTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKE 110 (247)
T ss_pred CChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccccc
Confidence 5665 4456778899999999999999999999999999999999999999999999999999888653 2
Q ss_pred CCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 73 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..++|+|+|+||+|+...+++..+++..++.. .++.++++||+++.|++++|++++..+
T Consensus 111 ~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 111 NVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 24789999999999986667778888777754 467899999999999999999999864
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=4.9e-23 Score=145.86 Aligned_cols=120 Identities=33% Similarity=0.607 Sum_probs=106.2
Q ss_pred EEEE-CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQV-EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+ .+..+.+.+||++|++.+..++..+++++|++++|||+++.+++..+..|+..+.... .++|+++|+||+|+.+
T Consensus 43 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 43 EVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc
Confidence 3444 3677999999999999999999999999999999999999999999999999987765 3689999999999977
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.+++...+.+.++..++++++++||+++.|++++|+.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 122 KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 667777777788888889999999999999999999998764
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=2.5e-23 Score=148.99 Aligned_cols=119 Identities=31% Similarity=0.611 Sum_probs=105.0
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.+++..+.+++||++|++.|..++..+++++|++|+|||++++++|+.+. .|+..+.... .++|+++++||.|+.
T Consensus 39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 117 (173)
T cd04130 39 VVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLR 117 (173)
T ss_pred EEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhc
Confidence 45677888899999999999999999999999999999999999999999984 6988887543 368999999999985
Q ss_pred C------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745 89 H------------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 89 ~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
. .+.+..+++..+++..+. +++++||+++.|++++|+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 3 356788889999999987 8999999999999999998864
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.91 E-value=3.6e-23 Score=146.95 Aligned_cols=123 Identities=32% Similarity=0.499 Sum_probs=107.1
Q ss_pred eEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA--DSNIVIMMIGNKTD 86 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~D 86 (174)
+.+.+++..+.++|||++|++. +......+++.+|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|
T Consensus 38 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 117 (165)
T cd04146 38 RQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKAD 117 (165)
T ss_pred EEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 3566888889999999999985 34567788999999999999999999999999988887654 24799999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCC-CCHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEA-INVEKAFQTILSEIY 132 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~v~~~l~~~i~ 132 (174)
+...+.+..++++.++..++.+++++||+++ .|++++|+++++.+.
T Consensus 118 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 118 LLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred hHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 9776778888899999999999999999999 599999999988654
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=8.1e-23 Score=144.38 Aligned_cols=122 Identities=36% Similarity=0.593 Sum_probs=108.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+.+||++|++.|...+..+++.+|++++|||++++.+|..+..|+..+..... .++|+++|+||+|+.+
T Consensus 40 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 40 KVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 456788889999999999999999999999999999999999999999999999888876532 4799999999999976
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+.....+...++..++++++++||+++.|++++|+++.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5566777888888888999999999999999999999988764
No 88
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=8.1e-23 Score=149.64 Aligned_cols=125 Identities=20% Similarity=0.260 Sum_probs=103.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhh--------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEE
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYR--------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVIM 79 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~pii 79 (174)
.+.+++..+.++||||+|.+.|. .....+++.+|++|||||++++++|+.+..|+..+.... ..++|++
T Consensus 41 ~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii 120 (198)
T cd04142 41 AVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV 120 (198)
T ss_pred EEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE
Confidence 45678888999999999976542 123456789999999999999999999999998887653 3579999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+|+||+|+...+.+..++++.++. .++++++++||++|.|++++|+.+++.++.+.
T Consensus 121 ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 121 VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred EEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 999999997766677777777765 56899999999999999999999998887543
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=1.5e-22 Score=150.58 Aligned_cols=130 Identities=26% Similarity=0.301 Sum_probs=111.2
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYR-GALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKT 85 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~ 85 (174)
..+++.+++..+.+.|||++|++ ......++. ++|++++|||++++++|+.+..|+..+..... .++|+|+|+||+
T Consensus 39 ~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 39 YERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred eEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 34567788889999999999998 334455667 99999999999999999999999998876543 479999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
|+...+.+..++++.++..++++++++||+++.|++++|+++++.+........
T Consensus 117 Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 117 DLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred hccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence 998777788888889999889999999999999999999999999886655443
No 90
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=6.3e-23 Score=148.23 Aligned_cols=124 Identities=20% Similarity=0.359 Sum_probs=97.4
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~ 82 (174)
||+|... ..++...+.+++||++|++.++.+|..+|+++|++|||||+++.+++..+..|+..+.... ..+.|++|++
T Consensus 47 pt~g~~~-~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 47 PTIGFNV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred CCcceeE-EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence 7777332 1344556889999999999999999999999999999999999999999887777764322 2478999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhCC--------cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREGL--------SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
||+|+... ...++ +...+++ .++++||++|+|++++|++|++.+..
T Consensus 126 NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 126 NKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred ECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999753 33333 3333333 35689999999999999999988765
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=4.2e-22 Score=141.73 Aligned_cols=121 Identities=39% Similarity=0.742 Sum_probs=108.2
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.+||++|++.|...+..++..+|++++|||+++.+++..+..|+..+......++|+++|+||+|+...
T Consensus 48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 45678888899999999999999999999999999999999999999999999999887766557999999999999876
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+++..+..+.+.......++++||+++.|++++|+++.+.+
T Consensus 128 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 77777777888877778999999999999999999998764
No 92
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=1.8e-22 Score=144.31 Aligned_cols=120 Identities=28% Similarity=0.529 Sum_probs=105.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+.+||++|++.|...+..++.++|++++|||++++++|+.+. .|+..+... ..+.|+++++||+|+.+
T Consensus 40 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 40 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhc
Confidence 5567888889999999999999999999999999999999999999999985 688887665 35799999999999854
Q ss_pred c------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 L------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
. +.++.++++.+++.++. +++++||+++.|++++|+.+++.+
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 119 DPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 2 35777888999999985 799999999999999999998876
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=2.8e-22 Score=145.47 Aligned_cols=125 Identities=30% Similarity=0.573 Sum_probs=107.9
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.+++..+.+.+||++|++.|...+..++.++|+++++||+++.++|+.+. .|+..+....+ ++|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~ 118 (187)
T cd04129 40 TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118 (187)
T ss_pred EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhh
Confidence 35567888888999999999999888878889999999999999999999996 69998876654 69999999999985
Q ss_pred C----------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 89 H----------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 89 ~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+ .+.+..++.+.+++.++. +++++||+++.|++++|+++.+.++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 119 QDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred hCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 4 245666788899999985 8999999999999999999998876654
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=5e-22 Score=140.27 Aligned_cols=119 Identities=45% Similarity=0.824 Sum_probs=106.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+.|||++|++.|...+..+++++|++++|||+++.++|+.+..|+..+..+.. .+.|+++++||+|+..
T Consensus 41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 41 TLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 455678889999999999999999999999999999999999999999999999998877653 5799999999999974
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.....++...++...+++++++||+++.|++++++++++.
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 -REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 4566778888999899999999999999999999998875
No 95
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.90 E-value=1e-21 Score=139.96 Aligned_cols=125 Identities=43% Similarity=0.736 Sum_probs=109.4
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT 85 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~ 85 (174)
+.+.+++..+.+.+||++|++.|..++..+++++|++|++||+++++++..+..|...+..... .++|+++|+||+
T Consensus 40 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (172)
T cd01862 40 KEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKI 119 (172)
T ss_pred EEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECc
Confidence 3556788889999999999999999999999999999999999999999999889887654432 368999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
|+...+....++.+.+.+..+ .+++++||+++.|++++|+++.+.+.+.
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 120 DLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 998656667788888888887 7999999999999999999999988775
No 96
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=3.9e-22 Score=139.49 Aligned_cols=118 Identities=54% Similarity=0.936 Sum_probs=106.0
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.+||++|+..+...+..+++++|++++|||+++++++..+..|+..+......+.|+++++||+|+...
T Consensus 41 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 41 TIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ 120 (159)
T ss_pred EEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc
Confidence 44556677889999999999999999999999999999999999999999999999988776457999999999999755
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
.....++.+.++...+.+++++||+++.|++++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 66778889999998899999999999999999999886
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.89 E-value=5.3e-22 Score=139.53 Aligned_cols=120 Identities=36% Similarity=0.613 Sum_probs=108.6
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+++||++|++.+...+..+++.+|++++|||+++.+++..+..|+..+..... ...|+++++||+|+..
T Consensus 39 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 39 TIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 456677788999999999999999999999999999999999999999999999888877654 5799999999999987
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+.+..+++..++...+.+++++||+++.|++++|+++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 119 ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 67778888999999888999999999999999999999875
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=1.6e-22 Score=144.46 Aligned_cols=123 Identities=20% Similarity=0.355 Sum_probs=96.3
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~ 82 (174)
||+|.... .+....+.+++|||+|+++|..++..+|+++|++|||||+++..++..+..|+..+.... ..++|++||+
T Consensus 39 ~t~g~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04149 39 PTVGFNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFA 117 (168)
T ss_pred CCcccceE-EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence 56662221 233456889999999999999999999999999999999999999999988877765432 2468999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
||+|+.+ .+..+++++++.. ..+.++++||++|.|++++|++|.+
T Consensus 118 NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 118 NKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 9999975 2455666665421 2346899999999999999999864
No 99
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=3.5e-22 Score=142.74 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=107.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+||++|++.+..++..+++++|++++|||++++++|+.+..|+..+... .++|+++
T Consensus 36 ~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~ii 113 (169)
T cd01892 36 PTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLF 113 (169)
T ss_pred CccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEE
Confidence 6777 2345678898899999999999999999999999999999999999999999999998876432 3689999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||.|+.+.+.+...+..++++.+++ .++++||+++.|++++|+.+++.+.
T Consensus 114 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 114 VAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 999999976555444566778888887 4799999999999999999998765
No 100
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.89 E-value=8.5e-22 Score=140.98 Aligned_cols=127 Identities=28% Similarity=0.573 Sum_probs=106.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ....+.+++..+.+.+|||+|++.|..++..++.++|++++|||+++.++|+.+. .|+..+.+... ++|+++
T Consensus 32 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~~piil 110 (175)
T cd01870 32 PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIIL 110 (175)
T ss_pred CccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEE
Confidence 4554 2345677888899999999999999999989999999999999999999999985 68888776543 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||.|+.+. ..+...++++++...+. +++++||++|.|++++|+++.+.+
T Consensus 111 v~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 111 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 9999998642 23456778888888874 799999999999999999998764
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=6.4e-23 Score=145.90 Aligned_cols=124 Identities=18% Similarity=0.290 Sum_probs=101.4
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGN 83 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 83 (174)
||+|.. ...+++..+.+.+||++|++.|+.++..+++++|++++|||.++.+++..++.|+..+.... .++|+++|+|
T Consensus 30 pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~N 107 (164)
T cd04162 30 PTTGFN-SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLAN 107 (164)
T ss_pred ccCCcc-eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEe
Confidence 666643 24566677899999999999999999999999999999999999999999999988886544 4799999999
Q ss_pred CCCCCCccCCCH----HHHHHHHHHhCCcEEEEeccC------CCCHHHHHHHHHH
Q 043745 84 KTDLKHLRAVAT----EDAQSYAEREGLSFIETSALE------AINVEKAFQTILS 129 (174)
Q Consensus 84 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~v~~~l~~ 129 (174)
|.|+...+.+.. .++..++++.++.++++||++ ++|++++|+.++.
T Consensus 108 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 108 KQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 999976554322 224555666778899999988 9999999998763
No 102
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=3.2e-21 Score=141.15 Aligned_cols=123 Identities=30% Similarity=0.439 Sum_probs=103.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.++|||++|++.|..++..++.++|++|||||+++..+++.+..|+..+..... .++|+++|+||+|+.
T Consensus 38 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 38 KEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 3566778788999999999999999999999999999999999999999999999888876544 479999999999996
Q ss_pred C-ccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 H-LRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
. .+.+..++...... ..+.+++++||+++.|++++|+++++.+.
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 118 EEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 5 34455545444443 45678999999999999999999998765
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=5.8e-22 Score=141.52 Aligned_cols=128 Identities=17% Similarity=0.293 Sum_probs=101.4
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~ 82 (174)
||+|... ..++...+.+++||++|++.+...+..+++++|+++||||+++++++.++..|+..+.... ..+.|+++++
T Consensus 29 ~T~~~~~-~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 29 PTIGFNV-ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CcCceeE-EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 5665221 1234456789999999999999999999999999999999999999999999988876432 2458999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREG------LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
||+|+.. .+..++++.++...+ +.++++||++|.|++++|+++++.+...
T Consensus 108 NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 108 NKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred eCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 9999964 356676766654222 3688999999999999999998876553
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=1.2e-22 Score=143.75 Aligned_cols=123 Identities=18% Similarity=0.353 Sum_probs=92.6
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~ 82 (174)
||+|.... .+....+.+.|||++|+++|..++..+++++|++|||||+++.+++..+.+|+..+... ...+.|++|++
T Consensus 30 pt~g~~~~-~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 30 PTIGFNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CCCCcceE-EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 66663221 23334688999999999999999999999999999999999999999998877776432 22468999999
Q ss_pred eCCCCCCccCCCHHHH-HHHH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDA-QSYA----EREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
||+|+.+. ...++. ..+. ...++.++++||++|+|++++|++|.+
T Consensus 109 NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 109 NKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred ECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99999652 223232 2221 112345789999999999999999864
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=1.2e-21 Score=141.74 Aligned_cols=129 Identities=19% Similarity=0.355 Sum_probs=97.0
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~ 82 (174)
||+|.... .++...+.+++||++|++.++.++..+++++|++|||||+++++++..+..|+..+... ...+.|++|++
T Consensus 47 ~T~~~~~~-~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 47 PTIGFNVE-TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CccccceE-EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 56662221 23445688999999999999999999999999999999999999999988777766432 12368999999
Q ss_pred eCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
||.|+.+. ....+..... ....+.++++||++|.|++++|++|.+.+.+.|
T Consensus 126 NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 126 NKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred eCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999652 2233322211 111235678999999999999999999887765
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=2.2e-22 Score=144.62 Aligned_cols=125 Identities=18% Similarity=0.331 Sum_probs=94.5
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~ 82 (174)
||+|.... .+....+.++|||++|++.+..+|..+++++|++|||||++++++++.+..|+..+.... ..++|++||+
T Consensus 43 ~t~~~~~~-~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 43 PTIGFNVE-TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CccccceE-EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 66662211 222345789999999999999999999999999999999999999999988888775432 2468999999
Q ss_pred eCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
||.|+.+. ...++...... ...+.++++||++|.|++++|++|...+
T Consensus 122 NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 122 NKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred eCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999753 22333322211 1223577899999999999999998764
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.88 E-value=8e-21 Score=136.67 Aligned_cols=127 Identities=35% Similarity=0.533 Sum_probs=110.7
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL 87 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 87 (174)
++.+.+++..+.+++||++|+++|...+..++..+++++++||+++.++++.+..|+..+..... .+.|+++++||+|+
T Consensus 39 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 39 SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 44566777788899999999999999999999999999999999999999999998888766432 46899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
...+.+..++...++..++.+++++||+++.|+.++|+++.+.+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 866667777788888888899999999999999999999998876543
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=4.7e-21 Score=138.60 Aligned_cols=122 Identities=17% Similarity=0.332 Sum_probs=98.7
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~ 93 (174)
++..+.+.+|||+|++++..+|..+++++|++++|||+++.+++..+..|+..+..... .+.|+++|+||+|+.+ .+
T Consensus 48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~ 125 (183)
T cd04152 48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--AL 125 (183)
T ss_pred CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cC
Confidence 44678999999999999999999999999999999999999999998888887765432 4689999999999964 23
Q ss_pred CHHHHHHHHH--Hh----CCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 94 ATEDAQSYAE--RE----GLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 94 ~~~~~~~~~~--~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
..++...++. .. +++++++||+++.|++++|+++++.+...+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 126 SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKML 176 (183)
T ss_pred CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 3444444432 11 246889999999999999999999987665443
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=2.2e-21 Score=138.00 Aligned_cols=121 Identities=27% Similarity=0.370 Sum_probs=98.2
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+++..+.+.+|||+|++.+...+..++..+|+++||||++++++|+.+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 40 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 40 ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDG 118 (166)
T ss_pred eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccc
Confidence 356677889999999999998888888899999999999999999999985 68888776554 7999999999999764
Q ss_pred cCC--CHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAV--ATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.. ..+++..++..+. ..++++||+++.|++++|+.+.+.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 119 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred cchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 432 1233444444443 379999999999999999999887653
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.87 E-value=3.1e-21 Score=137.36 Aligned_cols=118 Identities=31% Similarity=0.634 Sum_probs=101.2
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+++..+.+++||++|++.|...+..+++.+|++++|||+++.++|... ..|+..+..... +.|+++|+||+|+.+
T Consensus 40 ~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 40 TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRD 118 (171)
T ss_pred EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhh
Confidence 445678888999999999999988899999999999999999999999887 468887776554 799999999999965
Q ss_pred cc-----------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745 90 LR-----------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 90 ~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
.. .+..++...++..++. +++++||+++.|++++|+++++
T Consensus 119 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 119 DENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred chhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 43 3356777888888887 9999999999999999998875
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.87 E-value=6e-21 Score=136.67 Aligned_cols=122 Identities=22% Similarity=0.369 Sum_probs=96.7
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv 81 (174)
||+| ..+.+.++ .+.+.+||++|++.++.++..+++++|++++|||++++.+|..+..|+..+... ...+.|+++|
T Consensus 44 ~t~g~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv 121 (173)
T cd04154 44 PTLGFQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL 121 (173)
T ss_pred CccccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 5666 23334454 477899999999999999999999999999999999999999988888776543 2257999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+||+|+.+. ...++...+.. ..+++++++||++|.|++++|++++.
T Consensus 122 ~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 122 ANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 999999753 24455555442 23568999999999999999999864
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=4.3e-21 Score=136.83 Aligned_cols=125 Identities=23% Similarity=0.326 Sum_probs=96.2
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 82 (174)
||+|... ..+....+.+++||++|++.++.+|..+++++|++|||||+++..++..+..|+..+..... .++|+++|+
T Consensus 29 ~t~g~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 29 PTVGFTP-TKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CcccceE-EEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 7777432 23333457899999999999999999999999999999999999999999999998865432 478999999
Q ss_pred eCCCCCCccCCCH-HH---HHHHHHHhC--CcEEEEeccCC------CCHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVAT-ED---AQSYAEREG--LSFIETSALEA------INVEKAFQTILS 129 (174)
Q Consensus 83 nK~Dl~~~~~~~~-~~---~~~~~~~~~--~~~~~~Sa~~~------~~i~~v~~~l~~ 129 (174)
||+|+++.+...+ .+ +..++++.+ +.++++||++| .|+.+.|+||..
T Consensus 108 NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 108 NKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 9999976442111 11 122332223 56788999998 899999999964
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=3.6e-20 Score=135.78 Aligned_cols=114 Identities=21% Similarity=0.362 Sum_probs=93.2
Q ss_pred CCcc---ceeEEEEC-----CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---
Q 043745 4 PRLG---KLCDFQVE-----GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA--- 72 (174)
Q Consensus 4 pt~g---~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--- 72 (174)
||+| ..+.+.++ +..+.++||||+|+++|..++..+|+++|++|+|||+++++||+.+..|+..+....
T Consensus 31 ~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~ 110 (202)
T cd04102 31 WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFP 110 (202)
T ss_pred cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccc
Confidence 6777 23344553 567899999999999999999999999999999999999999999999999987631
Q ss_pred ----------------CCCCeEEEEEeCCCCCCccCCCHH----HHHHHHHHhCCcEEEEeccCC
Q 043745 73 ----------------DSNIVIMMIGNKTDLKHLRAVATE----DAQSYAEREGLSFIETSALEA 117 (174)
Q Consensus 73 ----------------~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~ 117 (174)
..++|++||+||.|+.+.+.+... ....++++.+++.++.++.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 111 TGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred cccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 246999999999999765555443 245678889999888887755
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.86 E-value=1e-20 Score=135.74 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=88.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.+||++|++.+...+..+++++|+++||||+++.+++..+..|+..+..... .++|+++++||+|+.+. ...+
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~ 135 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPA 135 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHH
Confidence 57899999999999999999999999999999999999999888777776654332 46899999999999752 2333
Q ss_pred HH-HHHH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 97 DA-QSYA----EREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 97 ~~-~~~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+. +.+. ...+++++++||+++.|++++|++|.+
T Consensus 136 ~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 136 EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 32 2221 223467899999999999999999864
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=1.6e-20 Score=132.56 Aligned_cols=112 Identities=20% Similarity=0.322 Sum_probs=88.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCccC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~ 92 (174)
...+.+++|||+|+++|..++..+++++|++|||||+++..++..+..|+..+.... ..++|+++|+||+|+.+..
T Consensus 42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~- 120 (162)
T cd04157 42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL- 120 (162)
T ss_pred ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-
Confidence 445789999999999999999999999999999999999999998888888775432 2479999999999997532
Q ss_pred CCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 93 VATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 93 ~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..++...... ...+.++++||+++.|++++|++|.+
T Consensus 121 -~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 -TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred -CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 2223222211 11245899999999999999999865
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=8.9e-20 Score=131.11 Aligned_cols=124 Identities=27% Similarity=0.527 Sum_probs=99.8
Q ss_pred CCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||+|.. ..+.+++ +.+.+||.+|+..++..|+.|++++|++|||+|.++.+.+.+....+..+..... .++|++++
T Consensus 44 pT~g~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl 121 (175)
T PF00025_consen 44 PTIGFNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILIL 121 (175)
T ss_dssp EESSEEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred cccccccceeeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEE
Confidence 777733 3445555 7789999999999999999999999999999999999999988877777655432 57999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH------HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE------REGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+||+|+++ ....++...... ...+.++.+||.+|+|+.+.|+||.+.+
T Consensus 122 ~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 122 ANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 99999975 345555554432 2235689999999999999999999875
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=2.5e-20 Score=131.44 Aligned_cols=112 Identities=20% Similarity=0.388 Sum_probs=89.0
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~ 94 (174)
+..+.+.+||++|++.+...+..++.++|++++|||+++..++..+..|+..+..... .+.|+++|+||+|+... ..
T Consensus 41 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~ 118 (160)
T cd04156 41 EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LT 118 (160)
T ss_pred CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cC
Confidence 3457899999999999999999999999999999999999999999888887754322 47999999999999642 22
Q ss_pred HHHHHHH------HHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 95 TEDAQSY------AEREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 95 ~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..+.... +...+++++++||++++|++++|++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 2232221 2223457899999999999999998864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=1.5e-20 Score=132.64 Aligned_cols=114 Identities=19% Similarity=0.335 Sum_probs=87.2
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCccC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+++..+.+++|||+|++.|..++..+++++|++++|||++++.++.....|+..+.+ ....+.|+++|+||+|+.+..
T Consensus 38 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~- 116 (158)
T cd04151 38 VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL- 116 (158)
T ss_pred EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-
Confidence 344567899999999999999999999999999999999999888877666654433 222468999999999997532
Q ss_pred CCHHHHHH-HH----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 93 VATEDAQS-YA----EREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 93 ~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
...+... +. ...+.+++++||+++.|++++|+++++
T Consensus 117 -~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 -SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 2222222 11 112346999999999999999999875
No 119
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.9e-20 Score=131.73 Aligned_cols=128 Identities=19% Similarity=0.357 Sum_probs=103.4
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
.||+|+..+ .+..+.+++.+||.+||++++..|+.||++.+++|||+|.+|++.+...++.+..+..... ...|++++
T Consensus 46 vPTiGfnVE-~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~ 124 (181)
T KOG0070|consen 46 VPTIGFNVE-TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVF 124 (181)
T ss_pred CCcccccee-EEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEE
Confidence 599996654 3334469999999999999999999999999999999999999999999877777665554 68999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|++.. .+..++...... +.+.+..++|.+|+|+.+.++|+...+..
T Consensus 125 aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 125 ANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred echhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 999999864 334444333322 34567889999999999999999988754
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=1.8e-20 Score=132.02 Aligned_cols=110 Identities=18% Similarity=0.338 Sum_probs=90.0
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.+||++|++.+...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++++||+|+.... ..+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~ 119 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS 119 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence 4789999999999999999999999999999999999999999988888775533 2478999999999997533 233
Q ss_pred HHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 97 DAQSYAE-----REGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 97 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+...... ...++++++||++|.|++++|++|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 3333322 23467999999999999999999875
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=4.2e-19 Score=131.47 Aligned_cols=120 Identities=30% Similarity=0.576 Sum_probs=103.2
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+..++..+.+.+||++|++.|..++..++.+++++++|||+++..+|..+..|+..+.... .++|+++++||.|+.+
T Consensus 50 ~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~- 127 (215)
T PTZ00132 50 KFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD- 127 (215)
T ss_pred EEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-
Confidence 33457788999999999999999999999999999999999999999999999999887654 4799999999999965
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+..+ ...++...++.++++||+++.|++++|.++++.+..
T Consensus 128 ~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 128 RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 333333 345777788999999999999999999999998765
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=1.8e-19 Score=127.92 Aligned_cols=110 Identities=22% Similarity=0.406 Sum_probs=90.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
...+.+|||+|++.+..++..++.++|+++||||+++.+++..+..|+..+.+... .++|+++++||+|+... ...+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~ 126 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE 126 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence 47889999999999999999999999999999999999999988888887655322 47999999999999653 3344
Q ss_pred HHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 97 DAQSYAER-------EGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 97 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+...+... .+++++++||++|.|+++++++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 55444432 2357999999999999999999864
No 123
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-21 Score=136.83 Aligned_cols=125 Identities=28% Similarity=0.488 Sum_probs=114.8
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
.+++..+++.+||++|+++|......||++|.+.++||+-+|+.||+.+.+|++.+..... .+|.++|-||+||.++.+
T Consensus 63 ~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 63 KVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred HhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhh
Confidence 4455556778999999999999999999999999999999999999999999999987765 799999999999998888
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
+...+.+.+++.+...++.+|++...|+..+|..|+++..+.+...
T Consensus 142 ~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 142 MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887654
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=2.2e-19 Score=130.29 Aligned_cols=123 Identities=22% Similarity=0.370 Sum_probs=97.5
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||++ ....+.+++ +.+.+||++|++.+...|..+++++|++++|+|+++.+++.....|+..+..... .+.|++++
T Consensus 49 ~T~~~~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv 126 (190)
T cd00879 49 PTLHPTSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL 126 (190)
T ss_pred CccCcceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE
Confidence 4444 223444554 6789999999999999999999999999999999999999888888887765332 46999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHH----------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAER----------------EGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+||+|+.. .+..++.+.+... ..++++++||++++|++++|+++.+.
T Consensus 127 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 127 GNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 99999964 4556666665542 12468999999999999999999865
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.82 E-value=1.4e-18 Score=134.04 Aligned_cols=143 Identities=23% Similarity=0.408 Sum_probs=104.5
Q ss_pred CCCcc---ceeEEEEC-------------CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHH
Q 043745 3 QPRLG---KLCDFQVE-------------GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK 66 (174)
Q Consensus 3 ~pt~g---~~~~~~~~-------------~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 66 (174)
.||+| ..+.+.++ ++.+.++||||+|++.|..++..||+++|++|+|||+++.++|+.+..|+.
T Consensus 51 ~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~ 130 (334)
T PLN00023 51 PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAS 130 (334)
T ss_pred CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHH
Confidence 47887 33555664 256889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC------------CCCeEEEEEeCCCCCCcc---C---CCHHHHHHHHHHhCC-cE---E------------EE
Q 043745 67 ELRDHAD------------SNIVIMMIGNKTDLKHLR---A---VATEDAQSYAEREGL-SF---I------------ET 112 (174)
Q Consensus 67 ~i~~~~~------------~~~piilv~nK~Dl~~~~---~---~~~~~~~~~~~~~~~-~~---~------------~~ 112 (174)
.+..... .++|++||+||+||...+ . +..++++.|+.+.++ +. + .+
T Consensus 131 eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~ 210 (334)
T PLN00023 131 EVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSEELPLTESFPGNGGLIA 210 (334)
T ss_pred HHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCCccccccccccccCCCccHhh
Confidence 9976531 258999999999996542 2 357899999999873 11 1 12
Q ss_pred eccCCC-CHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 043745 113 SALEAI-NVEKAFQTILSEIYRIISKKSLSSGEP 145 (174)
Q Consensus 113 Sa~~~~-~i~~v~~~l~~~i~~~~~~~~~~~~~~ 145 (174)
.|+.+. ..+.+..-....|.++.-....+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
T PLN00023 211 AAKEARYDKEALIKFFRMLIRRRYFSDELPAPSP 244 (334)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence 333332 334444444445555555666666555
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.82 E-value=1e-18 Score=120.58 Aligned_cols=128 Identities=19% Similarity=0.353 Sum_probs=102.3
Q ss_pred CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
.||.| ..+++. .+.+++++||++||...++.|+.||+..|++|+|+|.+|+..+++....+..+..-.. ...|+++
T Consensus 45 ~pt~gf~Iktl~--~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv 122 (185)
T KOG0073|consen 45 SPTLGFQIKTLE--YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV 122 (185)
T ss_pred CCccceeeEEEE--ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE
Confidence 37777 344444 4458899999999999999999999999999999999999999888766666543222 4689999
Q ss_pred EEeCCCCCCccCCCHHH------HHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATED------AQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
++||+|+... +..++ +.+++....++++.|||.+|+++.+.+.|+...+..+
T Consensus 123 lank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 123 LANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 9999999842 22222 3455566678999999999999999999999998874
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=6.2e-19 Score=126.55 Aligned_cols=111 Identities=25% Similarity=0.332 Sum_probs=89.7
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++..+.++||||+|+++|...+..+++++|++|+|||+++..++..+..|.... . .++|+++|+||+|+.+.. .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~ 136 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--P 136 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--H
Confidence 667888999999999999999999999999999999999877776666664332 2 368999999999996422 2
Q ss_pred HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.....++++.+++ +++++||++|.|++++|+++.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2334566676776 489999999999999999998764
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=1.2e-18 Score=126.15 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=90.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.+||++|++.+...|..++.++|+++||+|+++++++.....|+..+.... ..+.|+++|+||+|+.. .++.+
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~ 137 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED 137 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence 4678999999999999999999999999999999999999998888877765432 24789999999999964 34555
Q ss_pred HHHHHHHH------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 97 DAQSYAER------------EGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 97 ~~~~~~~~------------~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
++.+.... ....++++||++++|++++++||..+
T Consensus 138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 55443311 12358999999999999999999765
No 129
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=116.50 Aligned_cols=126 Identities=21% Similarity=0.397 Sum_probs=99.7
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
.||+|++.+ ++-.+.+.+++||++|++..+.+|+.||.+..++|||+|..+.+..++.+..+..+.... ..+.|+++.
T Consensus 46 ipTvGFnve-tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl 124 (180)
T KOG0071|consen 46 IPTVGFNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL 124 (180)
T ss_pred ccccceeEE-EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE
Confidence 489996643 344566889999999999999999999999999999999999988888866555554333 368999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+||+|++.. ...++++.+.. ...+-+.+++|.++.|+.+.|.|+....
T Consensus 125 ANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 125 ANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 999999874 44556555543 2235678999999999999999987653
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.7e-18 Score=134.60 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=90.3
Q ss_pred EEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 89 (174)
..+.|||+||..+ ....+-.++++++++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 4589999999742 122233355689999999999988889999999998877653 3689999999999976
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
...+.....+.++...+.+++++||++++|++++++++.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44444444555666667899999999999999999999887654
No 131
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.79 E-value=9.7e-19 Score=118.69 Aligned_cols=123 Identities=25% Similarity=0.461 Sum_probs=99.4
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 82 (174)
||+|+.. ..+....+.+.+||.+||.+|+.+|+.|+++++++++|+|+.+++.+......+..+..... ..+|+++++
T Consensus 51 ptvGfnm-rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 51 PTVGFNM-RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred cccccee-EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 7888654 35666678999999999999999999999999999999999999988877766666655443 679999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhC--------CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREG--------LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
||.|++++ +... .+..++| +..|.+|++...|++.+.+|++++-.
T Consensus 130 nK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 130 NKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 99999863 3232 2333443 45789999999999999999998743
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=3.6e-18 Score=121.29 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=81.1
Q ss_pred eEEEEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 17 RTIKAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPTTF--ENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
..+.+.||||||+.+.. .........+|++++|+|+++..++ .....|+..+.... .+.|+++++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEcc
Confidence 34789999999984211 1111112346899999999987653 55567877776543 378999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+.....+. +.++++...+.+++++||+++.|++++|+++.+.+
T Consensus 124 Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 997644332 24555555678899999999999999999998875
No 133
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=1.1e-17 Score=116.90 Aligned_cols=110 Identities=23% Similarity=0.409 Sum_probs=86.9
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.+||++|++.+...+..+++.+|++++|+|+++.+++.....|+..+.... ..++|+++|+||+|+.+... ..
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~ 120 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VD 120 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HH
Confidence 3789999999999999999999999999999999999999988877777765432 24789999999999875322 22
Q ss_pred HHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 97 DAQSYA-----EREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 97 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+..... ....++++++|++++.|++++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 221111 122357899999999999999999875
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=6e-18 Score=120.32 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=84.9
Q ss_pred EEEEEEeCCCch----hhhhhhHHh---hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQE----RYRAITSAY---YRGALGALLVYDVTKP-TTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~~----~~~~~~~~~---~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 88 (174)
..+.||||||+. .+..+...+ +..+|++++|+|+++. ++++.+..|+..+..... ...|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 378999999963 222233333 3469999999999999 789999999888876542 368999999999997
Q ss_pred CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+.... .+....+.... +.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 64433 34455555553 6789999999999999999998865
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.75 E-value=5.7e-18 Score=117.30 Aligned_cols=98 Identities=21% Similarity=0.195 Sum_probs=76.4
Q ss_pred EEEeCCCch-----hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 22 QIWDTAGQE-----RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 22 ~l~D~~G~~-----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+|||+|+. .|..+.. .++++|++++|||+++++++.. ..|...+ ..|+++|+||+|+.+ +....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence 689999982 3444444 5899999999999999988755 3454321 249999999999965 345567
Q ss_pred HHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHH
Q 043745 97 DAQSYAEREGL-SFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 97 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
+.+++++..+. +++++||+++.|++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 77888888776 799999999999999999874
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=6.4e-17 Score=115.43 Aligned_cols=119 Identities=22% Similarity=0.346 Sum_probs=90.0
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||.| ....+.+++ ..+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+.... ...+|++++
T Consensus 44 ~t~g~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 121 (173)
T cd04155 44 PTQGFNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVF 121 (173)
T ss_pred CCCCcceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 5555 222334444 678999999999999999999999999999999999988888877776654332 246999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhCC--------cEEEEeccCCCCHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREGL--------SFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+||.|+.+.. .. .++.+.+++ +++++||++++|++++|+|+.+
T Consensus 122 ~nK~D~~~~~--~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 122 ANKQDLATAA--PA---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EECCCCccCC--CH---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 9999986532 12 223333332 4789999999999999999875
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=4.1e-17 Score=115.06 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=76.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-- 92 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-- 92 (174)
...+.+|||||+++|......++.++|++++|+|+++ .++.+.+ ..+... . ..|+++++||+|+.+...
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~ 123 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLE 123 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHH
Confidence 3578999999999998777788899999999999987 3333322 222222 1 248999999999975321
Q ss_pred CCHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 93 VATEDAQSYAER---EGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 93 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
...++..++... .+.+++++||+++.|++++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 112334444443 3578999999999999999988754
No 138
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-17 Score=115.97 Aligned_cols=127 Identities=22% Similarity=0.388 Sum_probs=99.8
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||+| -.-++.++ ...+.|||.+||+..+++|..||..++++|+++|+++++.|+....-++.+..... .++|+++.
T Consensus 55 ~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~l 132 (197)
T KOG0076|consen 55 PTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVL 132 (197)
T ss_pred cccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence 6666 22244455 45689999999999999999999999999999999999999988766666544433 68999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH------HhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE------REGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+||.|+.+.. ..+++..... +...++..+||.+|+|+++...|++..+.+.
T Consensus 133 ankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 133 ANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999998643 3334333322 2236899999999999999999999987765
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.74 E-value=9e-17 Score=109.91 Aligned_cols=120 Identities=27% Similarity=0.424 Sum_probs=103.1
Q ss_pred CCeEEEEEEEeCCCchhh-hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccC
Q 043745 15 EGRTIKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 92 (174)
.|-+-++.|+||.|...+ ..+-+.|+.-+|++++|||..|++||+.+..+...|..+.. .++||++++||.|+.++++
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh
Confidence 445567999999998888 56778899999999999999999999998665555655443 6899999999999998899
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+..+.++.|+..-.+..++++|.+...+-+-|..+...+.+.
T Consensus 136 vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 136 VDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQP 177 (198)
T ss_pred cCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCC
Confidence 999999999999999999999999999999888887765543
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=9.4e-17 Score=112.65 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=83.6
Q ss_pred EEEECCeEEEEEEEeCCCchhhhh------hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRA------ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.+.+++ ..+.||||||++.+.. ++..++. ++|++++|+|+.+.+... .|+..+... ++|+++++
T Consensus 37 ~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~ 108 (158)
T cd01879 37 RFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLEL---GLPVVVAL 108 (158)
T ss_pred EEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHHc---CCCEEEEE
Confidence 344454 4689999999987654 3566665 999999999998865432 344444332 68999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
||+|+.+...+. .....++..++++++++||.++.|+.++++++.+.
T Consensus 109 NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 109 NMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 999997644443 33467777789999999999999999999988775
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=9.7e-17 Score=125.64 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred EEEEEEeCCCchh----hhhhhHHh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745 19 IKAQIWDTAGQER----YRAITSAY---YRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D 86 (174)
..+.|||+||... ...+...+ +++++++++|+|+++. ++++.+..|+.++..+.. .+.|+++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 5689999999742 12233333 4579999999999986 678888888888766543 4689999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+... ..+..+++++.++.+++++||++++|++++++++.+.+
T Consensus 285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 976432 23445566667788999999999999999999998754
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.72 E-value=8.3e-17 Score=118.12 Aligned_cols=105 Identities=21% Similarity=0.187 Sum_probs=80.9
Q ss_pred EEEEEeCCCchh---------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 20 KAQIWDTAGQER---------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 20 ~l~l~D~~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.||||+|..+ |...+ ..+..+|++++|+|+++++++..+..|...+......+.|+++|+||+|+.+.
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 689999999732 22222 23678999999999999988888877877776655456899999999999653
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
... ..++...+.+++++||+++.|+++++++|.+.
T Consensus 169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 221 13444556789999999999999999998765
No 143
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=109.30 Aligned_cols=123 Identities=24% Similarity=0.508 Sum_probs=103.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
++.+.+..+.+.+||.+|++++..+.+...+++-+++|+||.+.+.+++.+.+|+.+.+......+|+ +|++|.|+-=.
T Consensus 61 t~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~ 139 (205)
T KOG1673|consen 61 TVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFID 139 (205)
T ss_pred EEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhc
Confidence 56778889999999999999999999999999999999999999999999999999988776655665 68999996321
Q ss_pred -----cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 91 -----RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
++....+.+.+|+-++...+++|+....|+..+|.-++.++...
T Consensus 140 lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 140 LPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence 11122446777888899999999999999999999888887664
No 144
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=1.2e-16 Score=113.06 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred EEeCCCc-----hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 23 IWDTAGQ-----ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 23 l~D~~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
+|||||. +.++.+. ..++++|++++|+|+++.+++. ..|+..+ . .+.|+++++||+|+.+ ...+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA 110 (158)
T ss_pred cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence 6999997 3333333 3478999999999999887653 3454443 1 2578999999999965 33566
Q ss_pred HHHHHHHhCC--cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 98 AQSYAEREGL--SFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 98 ~~~~~~~~~~--~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
..+++.+++. +++++||++++|++++|+.+.+.+.+...
T Consensus 111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence 7777778774 89999999999999999999888765543
No 145
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.71 E-value=8.3e-16 Score=105.75 Aligned_cols=116 Identities=47% Similarity=0.804 Sum_probs=90.8
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH-HHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE-LRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~-i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
...+....+.+||++|+..+...+..+++.+|++++|+|+++..++.....|+.. .........|+++++||.|+....
T Consensus 39 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 39 EVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred EECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 3445678899999999999988889999999999999999999998888777322 222233579999999999997643
Q ss_pred CCCHHH-HHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043745 92 AVATED-AQSYAEREGLSFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
...... ...+....+.+++++|+.++.|++++++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 119 VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 332222 3444555568999999999999999999875
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=2.1e-16 Score=112.77 Aligned_cols=113 Identities=21% Similarity=0.185 Sum_probs=82.4
Q ss_pred EEEEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCCh------hhHHHHHHHHHHHHhhcC-------CCCe
Q 043745 18 TIKAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKP------TTFENVSRWLKELRDHAD-------SNIV 77 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p 77 (174)
...+.||||||.... ..+ ...+++++|++++|+|+++. .++..+..|...+..... .+.|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 456799999997431 222 23457789999999999988 578887777777754432 2689
Q ss_pred EEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 78 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+++|+||+|+..................+..++++||+++.|++++++++.+.
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999999997644333322233444456789999999999999999988764
No 147
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.69 E-value=3.6e-15 Score=110.36 Aligned_cols=126 Identities=39% Similarity=0.578 Sum_probs=98.6
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
..++..+.+.+|||+|+++|+.++..|+.++++++++||.++.++ ++....|...+........|+++++||+|+....
T Consensus 48 ~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 48 EPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 344447889999999999999999999999999999999999554 4455889999887765569999999999997653
Q ss_pred ------------CCCHHHHHHHHHHh---CCcEEEEecc--CCCCHHHHHHHHHHHHHHHHhhc
Q 043745 92 ------------AVATEDAQSYAERE---GLSFIETSAL--EAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 92 ------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
.............. ...++++|++ ++.++.++|..++..+.......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 128 SSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred hHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 22233333333222 3348999999 99999999999999998665444
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=3.8e-16 Score=113.89 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=77.5
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
+.++++.+.+.||||+|+++|...+..+++++|++++|||+++.. +.....|+..+.. .++|+++++||+|+...+
T Consensus 58 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 58 TAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred eEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCC
Confidence 345556688999999999999999999999999999999998742 2333344444433 368999999999996532
Q ss_pred C-CCHHHHHHHHH-------HhCCcEEEEeccCCCCHHH
Q 043745 92 A-VATEDAQSYAE-------REGLSFIETSALEAINVEK 122 (174)
Q Consensus 92 ~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~ 122 (174)
. ...++..++.. ..+++++++||++|.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 1 12334444442 2367899999999987643
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=7.4e-16 Score=109.21 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=78.0
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~ 96 (174)
...+.||||+|++.|..++..++..+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...... ...
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~ 124 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence 56789999999999999999999999999999999874322211 11222322 26899999999999642210 011
Q ss_pred HHHHHHH----H--hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 97 DAQSYAE----R--EGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 97 ~~~~~~~----~--~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
....+.. . ..++++++||+++.|++++++++.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111111 1 1368999999999999999999987643
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=8.6e-17 Score=117.73 Aligned_cols=106 Identities=25% Similarity=0.211 Sum_probs=74.0
Q ss_pred EEEEEeCCC-----------chhhhhhhHHhhc----cCCEEEEEEeCCChhhHH----------HHHHHHHHHHhhcCC
Q 043745 20 KAQIWDTAG-----------QERYRAITSAYYR----GALGALLVYDVTKPTTFE----------NVSRWLKELRDHADS 74 (174)
Q Consensus 20 ~l~l~D~~G-----------~~~~~~~~~~~~~----~~d~ii~v~d~~~~~s~~----------~~~~~~~~i~~~~~~ 74 (174)
.+.+|||+| ++.++..+..++. .++++++|+|.++...+. ....++..+.. .
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---L 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---c
Confidence 478999999 5777777777765 357888888876532210 00111222222 3
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCC---------cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL---------SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
++|+++|+||+|+.+.+ .+...+++..+++ +++++||++| |++++|++|.+.+.
T Consensus 130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 68999999999996533 3456666777765 4799999999 99999999988754
No 151
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=1.7e-15 Score=126.82 Aligned_cols=112 Identities=23% Similarity=0.293 Sum_probs=90.0
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++..+.++||||||+++|...+..++..+|++|+|||+++..+.+....|...+. .++|+++++||+|+.... .
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~ 139 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P 139 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence 5677899999999999999999999999999999999998777776666654432 268999999999996421 1
Q ss_pred HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.....++.+.+++ +++++||++|.|++++|+++.+.+.
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2334566666675 4899999999999999999887653
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.9e-15 Score=121.56 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred EEEEEEeCCCchh----hhhhhHHh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745 19 IKAQIWDTAGQER----YRAITSAY---YRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D 86 (174)
..+.|||+||... ...+...| +++++++++|+|+++. ++++.+..|...+..+.. .+.|++||+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 4689999999642 22344444 4569999999999864 677777888888776643 3689999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.. ..+..+.+.+.++.+++++||++++|++++++++.+.+...
T Consensus 286 L~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 286 LPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 853 23456667777778899999999999999999998876553
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.67 E-value=2e-15 Score=119.24 Aligned_cols=105 Identities=21% Similarity=0.157 Sum_probs=77.6
Q ss_pred EEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
..+.||||+|. +.|...+. .+.++|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 47899999997 23444333 478999999999999988888777776666554434689999999999964
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
... ...+. ....+++++||+++.|++++++++.+.
T Consensus 316 ~~~-----v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 EPR-----IERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hHh-----HHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 221 11111 122468999999999999999988754
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=1.2e-15 Score=116.85 Aligned_cols=107 Identities=20% Similarity=0.083 Sum_probs=76.2
Q ss_pred EEEEEEeCCCchhh--------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERY--------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.++.||||||.... ......+++++|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+...
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence 46899999997532 112345678999999999999876664 334444433 26899999999999642
Q ss_pred cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.. .......++...+. +++++||++|.|++++++++.+.+
T Consensus 123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 22 22334444444454 799999999999999999887764
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.66 E-value=1.5e-15 Score=106.22 Aligned_cols=103 Identities=21% Similarity=0.097 Sum_probs=74.4
Q ss_pred EEEEEEeCCCchhhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.+|||||++.+.. .+..+++++|++++|+|..+..+.... .+...+.. .+.|+++|+||+|+.+.
T Consensus 45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKE 120 (157)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCCh
Confidence 5689999999887543 345667899999999999875444332 12222322 25899999999999763
Q ss_pred cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
... ......++. +++++|++++.|++++|+++.+.
T Consensus 121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 221 233344565 78999999999999999999875
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=1.3e-15 Score=123.45 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=82.5
Q ss_pred EEEEEEeCCCchhhhhh--------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRAI--------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.+|||+|+..+... ...+++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN 325 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence 45789999998654332 24678899999999999998887765 6665543 36899999999999642
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
+...++..++.+++++||++ .|++++|+.+.+.+.+...
T Consensus 326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYS 364 (442)
T ss_pred ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 22345667788899999997 6999999999999887653
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.9e-15 Score=123.96 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=79.8
Q ss_pred EECCeEEEEEEEeCCCc----------hhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 13 QVEGRTIKAQIWDTAGQ----------ERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~----------~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.+++. .+.||||+|. +.|..+. ..+++++|++++|||+++..++..+. ++..+.. .+.|+|+|
T Consensus 255 ~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV 328 (472)
T PRK03003 255 ELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLA 328 (472)
T ss_pred EECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence 34554 4579999995 3444443 34678999999999999988887763 4444433 36899999
Q ss_pred EeCCCCCCccCC--CHHHHHH-HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAV--ATEDAQS-YAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 82 ~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+||+|+.+.... ...+... +......+++++||++|.|++++|+.+.+.+...
T Consensus 329 ~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 329 FNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred EECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999642111 1111111 1111236899999999999999999998876544
No 158
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=7.5e-16 Score=104.40 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=94.7
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEE
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMI 81 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv 81 (174)
.||+|+.-+ ++..+.+.+++||.+|+-..+..|+.||.+.|++|+|+|.+|.+...-... ++..+......+..++++
T Consensus 47 kPtigfnve-~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~ 125 (182)
T KOG0072|consen 47 KPTIGFNVE-TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVF 125 (182)
T ss_pred CCCCCcCcc-ccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEE
Confidence 377775432 344577889999999999999999999999999999999999876655533 333343333356889999
Q ss_pred EeCCCCCCccCCCHH---HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATE---DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|.......++. ....-.+...+.++++||.+|+|+++.++|+.+.+..
T Consensus 126 anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 126 ANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 999999763221111 1111122333789999999999999999999987754
No 159
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=1.1e-14 Score=101.08 Aligned_cols=115 Identities=37% Similarity=0.568 Sum_probs=91.2
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+++..+.+.+||++|+..+..++..+++.++++++++|.... .++.... .|+..+......+.|+++++||.|+..
T Consensus 43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 45666668899999999999999999999999999999999887 7777664 777776655544789999999999975
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
.. ........+......+++++||+++.|++++|+++
T Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 123 AK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 33 33333344444445789999999999999999876
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.2e-15 Score=124.98 Aligned_cols=106 Identities=24% Similarity=0.230 Sum_probs=76.2
Q ss_pred EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.||||+|.+. +...+..+++.+|++|||||+++..++.. ..|...+.. .+.|+++|+||+|+...
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG 161 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc
Confidence 3578999999762 44556778899999999999998765543 334444433 36899999999999642
Q ss_pred cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
. .+..+.+ .+++ .++++||++|.|++++|+++++.+..
T Consensus 162 ~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 162 E---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred c---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1 1222222 2343 45789999999999999999988744
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.6e-15 Score=126.94 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=80.2
Q ss_pred EEEEEEeCCCchhhhhh------hHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRAI------TSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~------~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+++|||||++++... .+.++. ++|++++|+|.++.+. ...+..++.+ .++|+++++||+|+.+.
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK 114 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh
Confidence 45799999999876543 344443 7899999999987432 2233333332 36899999999999764
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+. .+.+.+.+.++++++++||++++|++++++++.+..
T Consensus 115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4443 456788888999999999999999999999998753
No 162
>PRK15494 era GTPase Era; Provisional
Probab=99.63 E-value=3.8e-15 Score=117.29 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=74.3
Q ss_pred EEEEEEeCCCchh-hhhhh-------HHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQER-YRAIT-------SAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~-~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.++.||||||... +..+. ...+.++|+++||+|..+ ++..+. .|+..+... +.|+++|+||+|+..
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~ 174 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIES 174 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCcc
Confidence 4689999999843 22221 234679999999999765 444543 455555433 457788999999964
Q ss_pred ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
. ...+..+++.... ..++++||++|.|++++|+++.+.+.
T Consensus 175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 2 2345555555544 57999999999999999998877543
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=9.4e-15 Score=119.16 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=81.5
Q ss_pred EEEEEEeCCCchh----hhhh---hHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhc-----------CCCC
Q 043745 19 IKAQIWDTAGQER----YRAI---TSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHA-----------DSNI 76 (174)
Q Consensus 19 ~~l~l~D~~G~~~----~~~~---~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~ 76 (174)
..+.|||+||... ...+ .-.+++++|++|+|+|+++. +.+..+..|..++..+. ..+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 5789999999532 1112 22346789999999999853 35555555555554432 1368
Q ss_pred eEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 77 VIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 77 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+|||+||+|+.+.+.+ .+.........+++++++||+++.|+++++.+|.+.+....
T Consensus 286 P~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 286 PRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999754332 22233334455789999999999999999999998876644
No 164
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.61 E-value=1.9e-14 Score=120.68 Aligned_cols=113 Identities=23% Similarity=0.300 Sum_probs=88.6
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++..+.++||||||+.+|...+..++..+|++|+|+|+++.........|.... . .++|+++|+||+|+.... .
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~ 143 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--P 143 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--H
Confidence 566889999999999999999999999999999999999876555555554332 2 268999999999996422 1
Q ss_pred HHHHHHHHHHhCCc---EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGLS---FIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 95 ~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.....++.+.+++. ++++||+++.|++++++++.+.+..
T Consensus 144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 22334555556654 8999999999999999999887644
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=3.9e-15 Score=121.19 Aligned_cols=101 Identities=23% Similarity=0.207 Sum_probs=77.2
Q ss_pred EEEEEEeCCCchhhhhh--------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRAI--------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.+|||+|.+++... ...+++++|++++|||++++.+++....|.. ..+.|+++|+||+|+.+.
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence 56899999998754332 2346789999999999999887776544433 236899999999999753
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.... ...+.+++++||+++.|++++++++.+.+..
T Consensus 337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 3221 3345689999999999999999999988754
No 166
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.8e-16 Score=109.81 Aligned_cols=143 Identities=29% Similarity=0.445 Sum_probs=114.4
Q ss_pred CCCCccc--eeEEE-ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q 043745 2 GQPRLGK--LCDFQ-VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78 (174)
Q Consensus 2 g~pt~g~--~~~~~-~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 78 (174)
+.||+|- ...+. -+...+++..|||+|++.+..+.+-||-+....|++||++.+-.+.++..|...+.+.+. ++||
T Consensus 39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPi 117 (216)
T KOG0096|consen 39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPI 117 (216)
T ss_pred ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCe
Confidence 4578882 22222 244469999999999999999999999999999999999999999999999999888776 7999
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 043745 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 147 (174)
Q Consensus 79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~~ 147 (174)
++.+||.|...++ ...+...+-+..++.++++||+++.|.+.-|-|+.+++...-..+-...+.-.|
T Consensus 118 v~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~Lefva~paLaP 184 (216)
T KOG0096|consen 118 VLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPSLEFVAMPALAP 184 (216)
T ss_pred eeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhhhhcCCCCeEEEeccccCC
Confidence 9999999997643 234455666777899999999999999999999999887655444444444333
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.61 E-value=1e-14 Score=118.33 Aligned_cols=110 Identities=23% Similarity=0.170 Sum_probs=76.3
Q ss_pred EEEEEeCCCchhhhhh-----------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQERYRAI-----------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+|||+|..++... ...+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccC
Confidence 6889999997543321 134678999999999999876666543 3343333 268999999999997
Q ss_pred CccCCCHHHH-HHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDA-QSYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+... ..++. ..+...+ +++++++||++|.|++++|+++.+.+...
T Consensus 297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2111 11222 2222222 36899999999999999999998876543
No 168
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=1.1e-14 Score=106.99 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=76.4
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV- 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~- 93 (174)
.++.||||||+++|...+...+..+|++++|+|++++ ++++.+.. +.... ..|+++++||+|+......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~~--~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIMG--LKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHcC--CCcEEEEEEchhccCHHHHH
Confidence 6789999999999988888888899999999999873 23332222 22221 2478999999999652211
Q ss_pred -CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 94 -ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 94 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..++++++.... +++++++||+++.|++++|+.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 113334444332 57899999999999999999887643
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.60 E-value=1.6e-14 Score=100.90 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=76.0
Q ss_pred EEEEEEEeCCCchhhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
...+.+|||+|...+.. ....++.++|++++|+|+++..+......|.. ....|+++++||+|+.+
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence 35789999999765432 12346779999999999998777766544322 23689999999999976
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.... .....+.+++++||+++.|++++++++...+
T Consensus 122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4332 3344467899999999999999999987653
No 170
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.59 E-value=5.4e-15 Score=103.68 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=70.3
Q ss_pred EEEEEEeCCCchh------hhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQER------YRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~------~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.|+|+||... .......++ .+.|++++|+|+++.+.- .....++... ++|+++++||+|...+
T Consensus 47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~---l~l~~ql~e~---g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERN---LYLTLQLLEL---GIPVVVVLNKMDEAER 120 (156)
T ss_dssp EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHH---HHHHHHHHHT---TSSEEEEEETHHHHHH
T ss_pred ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHH---HHHHHHHHHc---CCCEEEEEeCHHHHHH
Confidence 5689999999432 123444454 589999999999874322 2333444443 6899999999998764
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
+.+.. +...+.+.+|++++.+||++++|++++++++
T Consensus 121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 44322 4677788899999999999999999998864
No 171
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=5.2e-14 Score=113.69 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=77.4
Q ss_pred EEEEEeCCCchhh--hhhh------HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 20 KAQIWDTAGQERY--RAIT------SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 20 ~l~l~D~~G~~~~--~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+.||||+|..+. ...+ ...+..+|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+..
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 5689999997331 1222 2346899999999999998888777655554444433468999999999996421
Q ss_pred CCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 92 AVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
. .... ....+.+ ++++||++|.|++++++++.+.+...
T Consensus 326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 1 1111 1124555 48899999999999999999887543
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=3.1e-14 Score=113.80 Aligned_cols=113 Identities=18% Similarity=0.096 Sum_probs=83.4
Q ss_pred EEEEEeCCCchhh-------hhhhHHhhccCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745 20 KAQIWDTAGQERY-------RAITSAYYRGALGALLVYDVT---KPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDL 87 (174)
Q Consensus 20 ~l~l~D~~G~~~~-------~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 87 (174)
.+.|+||||...- ......+++++|++++|+|++ +.+.++.+..|+..+..+.. .+.|+++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 4899999997431 111223578999999999998 45677777888888776542 35899999999999
Q ss_pred CCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.....+ .+..+++...++ .+++.+||+++.|++++++++.+.+..
T Consensus 288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 653322 344455555554 478999999999999999999887654
No 173
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.58 E-value=3.1e-14 Score=118.93 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=75.5
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQ 99 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 99 (174)
.+.|||||||+.|..++...+..+|++++|||+++...-+.... +..... .++|+++++||+|+.+. ..++..
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~~---~~vPiIVviNKiDl~~~---~~e~v~ 208 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAKA---ANVPIIVAINKIDKPEA---NPDRVK 208 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcccccC---CHHHHH
Confidence 68999999999999999999999999999999987422221111 222222 36899999999999642 233333
Q ss_pred HHHHHhC---------CcEEEEeccCCCCHHHHHHHHHH
Q 043745 100 SYAEREG---------LSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 100 ~~~~~~~---------~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..+...+ .+++++||++|.|++++|+++..
T Consensus 209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 3333222 46999999999999999999874
No 174
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.57 E-value=4.3e-14 Score=106.66 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=79.5
Q ss_pred hhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 30 ERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 30 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
++|..+.+.+++++|++++|||+++++ +++.+.+|+..+.. .++|+++|+||+||.+.+.+..+..+.+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 678888899999999999999999887 89999999986654 3689999999999975444433444444 357899
Q ss_pred EEEEeccCCCCHHHHHHHHHH
Q 043745 109 FIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 109 ~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998764
No 175
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.57 E-value=7.4e-15 Score=99.35 Aligned_cols=120 Identities=27% Similarity=0.372 Sum_probs=90.6
Q ss_pred CCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||.|++ +.+..++ .+.+++||.+|+...+..|..||.+.|++|||+|.+|...|+++.+.+-++..-.. ..+|+++.
T Consensus 47 pT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf 125 (185)
T KOG0074|consen 47 PTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF 125 (185)
T ss_pred ccCCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh
Confidence 788843 3444433 48899999999999999999999999999999999999999988655555544333 57999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHh--------CCcEEEEeccCCCCHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAERE--------GLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+||+|+.... ...+.+.++ -+.+-++||.+++|+.+-.+|+..
T Consensus 126 ankQdlltaa-----~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 126 ANKQDLLTAA-----KVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred hhhhHHHhhc-----chHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 9999986422 222222222 356788999999998888777653
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.56 E-value=7.3e-14 Score=118.67 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=80.0
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++....+.||||||++.|..++..++..+|++|+|+|+++.........| ..+.. .++|+|+++||+|+....
T Consensus 291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k~---~~iPiIVViNKiDl~~~~--- 363 (742)
T CHL00189 291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQA---ANVPIIVAINKIDKANAN--- 363 (742)
T ss_pred cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHHh---cCceEEEEEECCCccccC---
Confidence 34567899999999999999999999999999999999874222222112 22222 368999999999997521
Q ss_pred HHHHHHH-------HHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 95 TEDAQSY-------AEREG--LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 95 ~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.++.... ...++ ++++++||++|.|++++|+++....
T Consensus 364 ~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 364 TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 2222211 22333 6899999999999999999887763
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=7.9e-14 Score=113.35 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=73.5
Q ss_pred EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.||||+|++. +......++..+|+++||+|+.+..+.. .+..|+.. . +.|+++|+||+|+.
T Consensus 49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~ 122 (435)
T PRK00093 49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGP 122 (435)
T ss_pred cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCc
Confidence 6789999999886 3334566788999999999998754332 33444432 2 68999999999975
Q ss_pred CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+. .....++ ..+++ .++++||+++.|++++|+++..
T Consensus 123 ~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 123 DE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred cc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 41 1223333 35566 4899999999999999999887
No 178
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.55 E-value=2.5e-15 Score=105.97 Aligned_cols=120 Identities=33% Similarity=0.581 Sum_probs=100.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCCCcc
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~ 91 (174)
...++++|||..||++|..+...||+.+++.++|||+++.-+|+....|...+..... .++|+++.+||+|....-
T Consensus 72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a 151 (229)
T KOG4423|consen 72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA 151 (229)
T ss_pred HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh
Confidence 3446789999999999999999999999999999999999999999999998754332 578999999999997532
Q ss_pred C-CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 92 A-VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 92 ~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
. ........+.++.|. .++++|++.+.++.++...+++.++-..
T Consensus 152 ~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 152 KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 1 123566777888886 5999999999999999999999887654
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.55 E-value=8.4e-14 Score=116.53 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=81.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV- 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~- 93 (174)
..+.|||+||+++|.......+.++|++++|+|+++ +++++.+ ..+... ++| +++++||+|+.+...+
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCCHHHHH
Confidence 678999999999999988888999999999999998 3444333 222222 567 9999999999753322
Q ss_pred -CHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 94 -ATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 94 -~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..+++++++... +++++++||++|.|++++++.+...+..
T Consensus 123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 234455666554 4789999999999999999987766543
No 180
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=96.49 Aligned_cols=107 Identities=25% Similarity=0.406 Sum_probs=88.5
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..++|++||||++|+.+|+.+.++++++|+++|.+.+..+ .....+..+.... .+|++|++||+||.+. ...++.
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i 142 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKI 142 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHH
Confidence 4589999999999999999999999999999999999888 5556666655443 3999999999999874 345666
Q ss_pred HHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 99 QSYAERE--GLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 99 ~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+++.... .+++++.+|..+.+..+.++.+...
T Consensus 143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 6665544 7899999999999999988877655
No 181
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.54 E-value=1.1e-13 Score=100.75 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=77.2
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--C
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--V 93 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~ 93 (174)
+....+.||||||+..+..........+|++++|+|+++.........|. +.... +.|+++++||+|+..... .
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHH
Confidence 33678999999999766444334456789999999998754444333232 12222 579999999999864221 1
Q ss_pred CHHHHHHHHH-------HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAE-------REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 94 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..++.++... ..+++++++||+++.|++++++++.+++..
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1222222211 135789999999999999999999888764
No 182
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.54 E-value=6.7e-14 Score=93.93 Aligned_cols=75 Identities=36% Similarity=0.713 Sum_probs=62.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHH---HHHHHHhhcCCCCeEEEEEeCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSR---WLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piilv~nK~D 86 (174)
...+......+.|||++|++.+...+..++.++|++++|||+++.++++.+.. |+..+..... ++|+++|+||.|
T Consensus 42 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 42 VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 34567777779999999999999988888999999999999999999998744 5666655444 699999999998
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=1.1e-13 Score=112.28 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=75.5
Q ss_pred EEEEEEeCCCc--------hhhhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQ--------ERYRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~--------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.+|||||. +.+......+++.+|+++||+|+.+..+... +..|+. .. +.|+++|+||+|+.
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~~---~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---KS---GKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---Hh---CCCEEEEEECccCC
Confidence 45899999996 3445566778899999999999987543332 333433 22 68999999999987
Q ss_pred CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+... ...+ ...++. +++++||+++.|++++++++.+.+.
T Consensus 121 ~~~~----~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 121 KEDA----VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred cccc----cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 5332 1222 345676 7999999999999999999887663
No 184
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.54 E-value=1.9e-13 Score=98.41 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=82.4
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~ 95 (174)
...+.||||+|+..+...+..++..+|++++|+|+.+..+... ..++..+.. .+.|+++++||+|+...... ..
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence 4678999999999999999999999999999999987654432 334444433 36899999999999752221 12
Q ss_pred HHHHHHHHH--------------hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 96 EDAQSYAER--------------EGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 96 ~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+..++.... ...+++++||+++.|+++++.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 233333332 246899999999999999999988874
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=7.6e-14 Score=119.40 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=76.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA 94 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~ 94 (174)
..+.||||||++.|..++...+..+|++|||||+++. ++.+. | .... ..++|+|+++||+|+..... ..
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~---i-~~a~---~~~vPiIVviNKiDl~~a~~e~V 409 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA---I-NHAK---AAGVPIIVAINKIDKPGANPDRV 409 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH---H-HHHH---hcCCcEEEEEECccccccCHHHH
Confidence 5689999999999999999999999999999999874 33322 2 2222 23689999999999965210 00
Q ss_pred HHHHH---HHHHHhC--CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 95 TEDAQ---SYAEREG--LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 95 ~~~~~---~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..++. .+...++ ++++++||++|.|++++|+++...
T Consensus 410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 11111 1223333 689999999999999999998764
No 186
>PRK00089 era GTPase Era; Reviewed
Probab=99.52 E-value=1.5e-13 Score=106.32 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred EEEEEEEeCCCchhh--------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERY--------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
..++.||||||.... .......+.++|++++|+|+++...- ....++..+.. .+.|+++|+||+|+..
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVK 127 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCC
Confidence 367899999996432 22334467899999999999883111 11222233322 2589999999999974
Q ss_pred ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
...........+....+ .+++++||+++.|++++++++.+.+
T Consensus 128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 32222334445555444 5799999999999999999888765
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.50 E-value=3.3e-13 Score=115.83 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=83.4
Q ss_pred ECCeEEEEEEEeCCCchhhhh----------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 14 VEGRTIKAQIWDTAGQERYRA----------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
+......+++|||||+.++.. ....++ ..+|++++|+|.++.+.. ..|..++.+. ++|++++
T Consensus 45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvV 118 (772)
T PRK09554 45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVA 118 (772)
T ss_pred EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEE
Confidence 445556789999999876642 123343 489999999999885432 2344455443 6899999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+||+|+.+.+.+ ..+.+++.+.+|++++++||.+++|++++.+.+.+..
T Consensus 119 lNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 119 LNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 999999764544 3556788888999999999999999999998887654
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.50 E-value=2.4e-13 Score=94.47 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=78.1
Q ss_pred EEEEEEEeCCCchhhhh-------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 18 TIKAQIWDTAGQERYRA-------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
...+.+||++|...+.. ....++..+|++++|+|..+........ |...... .+.|+++++||.|+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCCh
Confidence 35689999999876543 3445788999999999999887666554 3333332 36899999999998753
Q ss_pred cCCCHH---HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 91 RAVATE---DAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 91 ~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
...... .........+.+++++||+++.|++++++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 322111 1122233345789999999999999999998765
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=2.6e-13 Score=116.19 Aligned_cols=106 Identities=21% Similarity=0.170 Sum_probs=73.8
Q ss_pred EEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.||||+|.+. +......+++.+|++|||+|+++...... ..|...++. .+.|+++|+||+|+...
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence 4688999999763 34455667899999999999986422111 234444443 36899999999998642
Q ss_pred cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
. ....++. .++. ..+++||++|.|+.++|+++++.+..
T Consensus 399 ~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 399 E----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred h----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1 1222221 2343 46789999999999999999987744
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.49 E-value=5.1e-13 Score=93.79 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred eEEEEEEEeCCCchhhh--------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 17 RTIKAQIWDTAGQERYR--------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
....+.+|||+|..... ......+..+|++++|+|+++..+. ....++..+... +.|+++++||+|+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhcc
Confidence 34678899999975432 2334567899999999999986211 112233333332 58999999999997
Q ss_pred CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.......+....+....+ .+++++|++++.+++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 432222333444444443 689999999999999999988764
No 191
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=9.4e-13 Score=93.23 Aligned_cols=108 Identities=24% Similarity=0.198 Sum_probs=73.0
Q ss_pred EEEEEEeCCCchhh----------hh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQERY----------RA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~~~~----------~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
..+.+|||+|.... .. ....++.++|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl 125 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDL 125 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEecccc
Confidence 34789999996432 11 123356799999999999988665543 23333332 25899999999999
Q ss_pred CCccCCCHHH-HHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 88 KHLRAVATED-AQSYAERE----GLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 88 ~~~~~~~~~~-~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+......++ .+.+...+ ..+++++||+++.|++++++++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 126 VEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 7643222222 22333333 3689999999999999999988754
No 192
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.48 E-value=5.5e-13 Score=96.78 Aligned_cols=113 Identities=24% Similarity=0.260 Sum_probs=80.2
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~ 94 (174)
.....+.|+|+||+.+|.......+..+|++|+|+|+.+...... .+.+..+... ++|+++++||+|+...+. ..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHH
T ss_pred ccccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHH
Confidence 556789999999999999888888999999999999987643322 2333434333 688999999999973211 00
Q ss_pred HHHHH-HHHHHhC------CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 95 TEDAQ-SYAEREG------LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 95 ~~~~~-~~~~~~~------~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.++.. .+.+..+ ++++++||.+|.|++++++.+.+.+.
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11122 3333332 47999999999999999999887754
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=1.3e-12 Score=111.98 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred EEEEEeCCCch----------hhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQE----------RYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.||||+|.. .|..+. ..+++.+|++++|+|+++..++..+. ++..+.. .++|+++|+||+|+.
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~ 574 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLM 574 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcC
Confidence 46799999953 233222 34578999999999999987777664 3344433 368999999999996
Q ss_pred CccCCCHHHHHH-HHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQS-YAERE----GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+... .+..+. +...+ ..+++++||++|.|++++|+.+.+.+..
T Consensus 575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5221 122222 22222 2467999999999999999999887765
No 194
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.46 E-value=5.8e-13 Score=111.54 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=86.6
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
...+..+...++||||||+++|...+..++..+|++++|+|+.+.. ......|+..+... ++|+|+++||+|+...
T Consensus 56 ~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 56 NTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSA 131 (594)
T ss_pred eEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCc
Confidence 3445555688999999999999999999999999999999998742 34445666665543 6899999999999653
Q ss_pred cCC-CHHHHHHHHH-------HhCCcEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043745 91 RAV-ATEDAQSYAE-------REGLSFIETSALEAI----------NVEKAFQTILSEIY 132 (174)
Q Consensus 91 ~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~v~~~l~~~i~ 132 (174)
+.. ...+...+.. ++.++++.+||+++. |+..+|+.+++.+.
T Consensus 132 ~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 132 RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 211 1233334332 235689999999995 78888888777654
No 195
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.46 E-value=1.9e-12 Score=95.14 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGA-LGALLVYDVTKP-TTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~ 89 (174)
....+.+||+||+.+++..+..+++++ +++|||+|+++. .++..+..|+..+... ....+|+++++||+|+..
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 356789999999999999999999999 999999999997 6777777766554322 124799999999999864
No 196
>COG1159 Era GTPase [General function prediction only]
Probab=99.45 E-value=8.4e-13 Score=100.02 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=72.5
Q ss_pred EEEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRW-LKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..++.|+||||... ........+.++|+++||+|+++.-. .-.+| ++.+.. .+.|+++++||+|..
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~ 127 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKV 127 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccC
Confidence 56899999999532 22334556789999999999987422 12223 333333 257999999999987
Q ss_pred CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.......+....+..... ..++++||+++.|++.+.+.+...+
T Consensus 128 ~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 128 KPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred CcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhC
Confidence 644421222333333333 4799999999999999887666543
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.6e-12 Score=103.56 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=73.3
Q ss_pred EEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.||+|.+... ......+..||++|||+|....- ..+.+.+|+. . .++|+++|+||+|-.
T Consensus 52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~~ 125 (444)
T COG1160 52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDNL 125 (444)
T ss_pred eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccCc
Confidence 48999999976322 23455678999999999998742 2333344433 1 268999999999975
Q ss_pred CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+ .++...-...+|+ +++.+||.+|.|+.+++++++..+.
T Consensus 126 ~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 126 K-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred h-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 3 2233333445664 7899999999999999999998874
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=8.7e-13 Score=107.28 Aligned_cols=111 Identities=26% Similarity=0.222 Sum_probs=74.6
Q ss_pred EEEEEEeCCCchh----------hhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQER----------YRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~~~----------~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
..+.+|||+|..+ |... ...+++.+|++|+|+|+++..+.... .++..+.. .+.|+++++||+|+
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl 296 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDL 296 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccC
Confidence 4578999999632 2211 22467899999999999987666554 23333333 25899999999999
Q ss_pred CCccCCCHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+.... .+....+...+ ..+++++||+++.|++++|+.+.+.....
T Consensus 297 ~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 297 VDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 742211 11112222222 36899999999999999999988765543
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=8.6e-13 Score=107.08 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=77.4
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV--SRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+......+.|||+||+++|.......+..+|++++|+|+++.+++... ..++. +..... ..|+++++||+|+.+.
T Consensus 79 ~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 79 KFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNY 156 (426)
T ss_pred EEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCc
Confidence 3455567899999999999887777778899999999999987543211 12222 222222 3579999999999641
Q ss_pred cC----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745 91 RA----VATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 91 ~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~ 125 (174)
.. ...++++.+++..+ ++++++||+++.|+.+.+.
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11 12345666676665 5799999999999987543
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.44 E-value=1.8e-12 Score=108.34 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=76.3
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC----
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV---- 93 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~---- 93 (174)
+.||||||++.|..++..++..+|+++||||+++ +++++.+. .+.. .++|+++++||+|+......
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCc
Confidence 8899999999999999999999999999999987 45554432 2222 26899999999999631100
Q ss_pred --------CHHH------------HHHHHH------------Hh--CCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 94 --------ATED------------AQSYAE------------RE--GLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 94 --------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
.... ...+.. .+ .++++++||++|+|+++++.++.......+
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 0000 001110 11 258999999999999999998876544433
No 201
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.44 E-value=3.4e-12 Score=92.78 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=72.8
Q ss_pred EEEEEEeCCCc----------hhhhhhhHHhhccC---CEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEe
Q 043745 19 IKAQIWDTAGQ----------ERYRAITSAYYRGA---LGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGN 83 (174)
Q Consensus 19 ~~l~l~D~~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~n 83 (174)
..+.||||+|. +.+..+...+++.+ +++++++|.+++.+... +..|+ .. .+.|+++++|
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~---~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE---YGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH---cCCcEEEEEE
Confidence 56899999994 45556666676654 67888899877543332 22332 22 2688999999
Q ss_pred CCCCCCccCC--CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 84 KTDLKHLRAV--ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 84 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|.|+....+. ..+++.........+++++||+++.|++++++.+...+
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 9998653221 12223344444467899999999999999999887654
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.44 E-value=1.1e-12 Score=105.69 Aligned_cols=112 Identities=22% Similarity=0.224 Sum_probs=78.4
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~ 95 (174)
...+.|||+||+++|...+...+..+|++++|+|+++........+.+..+.... -.|+++++||+|+.+.... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHH
Confidence 4678999999999998888888889999999999986421112222233332221 2478999999999753211 12
Q ss_pred HHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 96 EDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+++..+.... +++++++||+++.|+++++++|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3344444433 57899999999999999999887654
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.42 E-value=3.7e-12 Score=106.81 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=83.6
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+...+..+.+.++||||||+.+|...+..+++.+|++|+|+|+.+..... ...++..+... ++|+++++||+|+..
T Consensus 59 ~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~---gip~IVviNKiD~~~ 134 (607)
T PRK10218 59 KNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY---GLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc---CCCEEEEEECcCCCC
Confidence 34556667789999999999999999999999999999999998753332 23333443332 688999999999975
Q ss_pred ccC-CCHHHHHHHHH-------HhCCcEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043745 90 LRA-VATEDAQSYAE-------REGLSFIETSALEAI----------NVEKAFQTILSEIY 132 (174)
Q Consensus 90 ~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~v~~~l~~~i~ 132 (174)
.+. ...+++..+.. ...++++.+||++|. ++..+++.+++.+.
T Consensus 135 a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 135 ARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 321 11233333332 234679999999998 46677766655543
No 204
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.1e-12 Score=104.37 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=87.0
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-C
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-V 93 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~ 93 (174)
+|+.+.++++|||||.+|......-+.-+||+|+|+|+.....-+.+..++..+. .+.-+|.|.||+|++..+. .
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHH
Confidence 5677999999999999999988888899999999999998655554444444332 2678999999999987432 1
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
...+.+++......+.+.+||++|.|++++++++++.+...
T Consensus 197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 12223333333345799999999999999999998876543
No 205
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.40 E-value=4.9e-12 Score=98.86 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----------TTFENVSRWLKELRDHA 72 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~ 72 (174)
.||+|... ..+..+.+.+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+....
T Consensus 146 ~~T~Gi~~-~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 146 VKTTGIVE-TKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred cccCCeeE-EEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 58888442 23444468899999999999999999999999999999999874 23333334444444332
Q ss_pred C-CCCeEEEEEeCCCCCCc---------------c-CCCHHHHHHHHHH----------hCCcEEEEeccCCCCHHHHHH
Q 043745 73 D-SNIVIMMIGNKTDLKHL---------------R-AVATEDAQSYAER----------EGLSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 73 ~-~~~piilv~nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~ 125 (174)
. .+.|++|++||.|+..+ . ..+.+.+..+... ..+-++.++|.+..++..+|+
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence 2 57999999999996221 1 2234444444322 124467789999999999999
Q ss_pred HHHHHHHHHH
Q 043745 126 TILSEIYRII 135 (174)
Q Consensus 126 ~l~~~i~~~~ 135 (174)
.+.+.|+...
T Consensus 305 ~v~~~i~~~~ 314 (317)
T cd00066 305 AVKDIILQNN 314 (317)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.37 E-value=6.1e-12 Score=101.55 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=74.2
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV- 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~- 93 (174)
..+.||||||+++|..........+|++++|+|+++. ++.+.+ ..+.... -.|+++++||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~~--i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDIIG--IKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHcC--CCcEEEEEEeeccccchhHH
Confidence 5789999999998876655555678999999999964 233322 2222221 2468999999999653221
Q ss_pred -CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 94 -ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 94 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..++.+.++... +++++++||+++.|++++++.|...+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 123344444332 47899999999999999999887654
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.37 E-value=4e-12 Score=103.15 Aligned_cols=111 Identities=20% Similarity=0.135 Sum_probs=74.4
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+..+...+.||||||+++|.......+..+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+.+..
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 78 KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYD 155 (425)
T ss_pred EEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEcccccccc
Confidence 345556789999999999887665566789999999999987312211 12222323222 1 24699999999996421
Q ss_pred C----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745 92 A----VATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 92 ~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~ 125 (174)
. ...+++..++...+ ++++++||++|.|+++...
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1 11244555665555 4699999999999987543
No 208
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=3.1e-11 Score=95.22 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=93.2
Q ss_pred CCCCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh----------hHHHHHHHHHHHHh
Q 043745 2 GQPRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT----------TFENVSRWLKELRD 70 (174)
Q Consensus 2 g~pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~ 70 (174)
..||+|.. ..+.+++ +.+.+||++|+...+..|..++.+++++|||+|+++.+ .+.+....+..+..
T Consensus 168 r~~T~Gi~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 168 RVPTTGIQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred eCCccceEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 35888844 3344554 77899999999999999999999999999999999732 34444444555444
Q ss_pred hcC-CCCeEEEEEeCCCCCCc---------------cCCCHHHHHHHHHH-----------hCCcEEEEeccCCCCHHHH
Q 043745 71 HAD-SNIVIMMIGNKTDLKHL---------------RAVATEDAQSYAER-----------EGLSFIETSALEAINVEKA 123 (174)
Q Consensus 71 ~~~-~~~piilv~nK~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~v 123 (174)
... .+.|++|++||.|+... ...+.+.+..+... ..+.++.++|.+..++..+
T Consensus 246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v 325 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVV 325 (342)
T ss_pred CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHH
Confidence 322 57999999999997221 11223333333221 1244677889999999999
Q ss_pred HHHHHHHHHHHH
Q 043745 124 FQTILSEIYRII 135 (174)
Q Consensus 124 ~~~l~~~i~~~~ 135 (174)
|+.+...|++..
T Consensus 326 ~~~v~~~I~~~~ 337 (342)
T smart00275 326 FDAVKDIILQRN 337 (342)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 209
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=5.9e-12 Score=100.50 Aligned_cols=116 Identities=23% Similarity=0.282 Sum_probs=90.5
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
+|+.+.++|+|||||-+|......-+..|.|.++|+|++..-.-+.+...+..+.+ +.-+|-|.||+||+... .
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--p 145 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--P 145 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--H
Confidence 67889999999999999988777788899999999999986545555554444433 67899999999998632 2
Q ss_pred HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
+...+++..-.|+ ..+.+||++|.|++++++++++.+....+
T Consensus 146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 3444555666676 47889999999999999999888765443
No 210
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.35 E-value=2.3e-11 Score=91.18 Aligned_cols=107 Identities=26% Similarity=0.237 Sum_probs=72.8
Q ss_pred EEEEEEEeCCCchhhh-------hhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHH---------------------
Q 043745 18 TIKAQIWDTAGQERYR-------AITSAYYRGALGALLVYDVTKPT-TFENVSRWLKEL--------------------- 68 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i--------------------- 68 (174)
...+++||+||+.+.. .....+++++|++++|+|+++.+ ..+.+...+...
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi 125 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI 125 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence 3678999999975332 23345789999999999998764 333333322210
Q ss_pred --------------------Hhh----------------------cC--CCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 69 --------------------RDH----------------------AD--SNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 69 --------------------~~~----------------------~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
..+ .+ ..+|+++|+||+|+.. .++...++..
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~ 200 (233)
T cd01896 126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ 200 (233)
T ss_pred EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC
Confidence 000 00 2369999999999854 3455555543
Q ss_pred hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 105 EGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..++++||+++.|++++|+.+.+.+
T Consensus 201 --~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 201 --PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred --CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999888753
No 211
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=98.28 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCCCcccee------------------------EEEECCeEEEEEEEeCCCchhhhhh--------hHHhhccCCEEEE
Q 043745 1 MGQPRLGKLC------------------------DFQVEGRTIKAQIWDTAGQERYRAI--------TSAYYRGALGALL 48 (174)
Q Consensus 1 ~g~pt~g~~~------------------------~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~~~~~d~ii~ 48 (174)
+|+||+|||. +-.++-+++.+.+.||+|..+.... ....++.||.+++
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~ 302 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLF 302 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEE
Confidence 5999999776 2233333488999999997643222 3455789999999
Q ss_pred EEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 49 VYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 49 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
|+|.+... ..+....+ ....+.|+++|.||.||...... ..+....+.+++.+|+++++|++.+.+.+
T Consensus 303 v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i 371 (454)
T COG0486 303 VLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEGLDALREAI 371 (454)
T ss_pred EEeCCCCCchhhHHHHH------hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccCHHHHHHHH
Confidence 99999852 22211111 22347899999999999764321 11112224579999999999999999988
Q ss_pred HHHHHHH
Q 043745 128 LSEIYRI 134 (174)
Q Consensus 128 ~~~i~~~ 134 (174)
.+.+...
T Consensus 372 ~~~~~~~ 378 (454)
T COG0486 372 KQLFGKG 378 (454)
T ss_pred HHHHhhc
Confidence 8777665
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.34 E-value=6.5e-12 Score=93.33 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=70.0
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FE---NVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+......+.||||+|+.+|...+...+..+|++++|+|+++... |. .....+...... . ..|+++++||+|
T Consensus 71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~iiivvNK~D 148 (219)
T cd01883 71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-G-VKQLIVAVNKMD 148 (219)
T ss_pred EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-C-CCeEEEEEEccc
Confidence 344455789999999999888777777889999999999988421 11 122222222222 1 368999999999
Q ss_pred CCCc---cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCCHH
Q 043745 87 LKHL---RA---VATEDAQSYAEREG-----LSFIETSALEAINVE 121 (174)
Q Consensus 87 l~~~---~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 121 (174)
+... +. ...++++.+....+ ++++++||++|.|++
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9732 11 01122333344443 569999999999986
No 213
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.34 E-value=1e-11 Score=89.34 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=65.1
Q ss_pred EEEEEeCCCc----------hhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 20 KAQIWDTAGQ----------ERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 20 ~l~l~D~~G~----------~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.||||||. +.|..+...+++. ++++++|+|++++-+.... .++..+.. .++|+++++||+|
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D 140 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD 140 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence 4789999994 3455555566654 5799999999876444443 22333332 2689999999999
Q ss_pred CCCccC--CCHHHHHHHHHHhC--CcEEEEeccCCCCHH
Q 043745 87 LKHLRA--VATEDAQSYAEREG--LSFIETSALEAINVE 121 (174)
Q Consensus 87 l~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 121 (174)
+....+ ...+++++.....+ ..++++||++++|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 964321 12334444444443 479999999999873
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.33 E-value=1.6e-11 Score=103.33 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=76.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV- 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~- 93 (174)
..+.||||||+++|.......+.++|++++|+|+++. ++.+. +..+... ++| +++|+||+|+.+...+
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHH
Confidence 3479999999999988777788999999999999873 33332 2222222 345 6799999999653221
Q ss_pred -CHHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 94 -ATEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 94 -~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..++.+++....+ .+++++||++|.|++++++.+....
T Consensus 124 ~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 124 EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 1234455555544 6899999999999999999887643
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.33 E-value=4.2e-11 Score=90.00 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=57.6
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+..+...++||||||+.+|...+..+++.+|++++|+|+++.... ....|+..+... ++|+++++||+|+.
T Consensus 57 ~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 57 ASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred EEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 34445567899999999999999899999999999999999986443 334555555443 68999999999984
No 216
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.32 E-value=1.9e-11 Score=90.18 Aligned_cols=103 Identities=27% Similarity=0.206 Sum_probs=69.2
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC----
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA---- 92 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~---- 92 (174)
....+.||||||+++|...+...+..+|++++|+|+++...-. ...+...+... . ..++|+|+||+|+.....
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHH
Confidence 3457889999999998776777789999999999998753211 11222222222 1 245788999999864211
Q ss_pred CCHHHHHHHHHHhCC---cEEEEeccCCCCHHH
Q 043745 93 VATEDAQSYAEREGL---SFIETSALEAINVEK 122 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~ 122 (174)
....+.++++..++. +++++||+++.|+.+
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 112344555666663 589999999999875
No 217
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.32 E-value=6.8e-11 Score=94.32 Aligned_cols=110 Identities=25% Similarity=0.184 Sum_probs=75.4
Q ss_pred EEEEEeCCCchhhhh-----------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQERYRA-----------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.|+||+|..+-.. -....+..+|++++|.|++.+-+-++. +....+.+. +.+++++.||+|+.
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---g~~~vIvvNKWDl~ 302 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---GRGIVIVVNKWDLV 302 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---CCCeEEEEEccccC
Confidence 468999999543211 134557789999999999986544433 233334333 67999999999987
Q ss_pred CccCCCHHHHHHHHHH-h---C-CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAER-E---G-LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~---~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+......++.++..+. + + .+++++||+++.+++++|+.+....-.
T Consensus 303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 6433444444333332 2 2 589999999999999999988776544
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.31 E-value=4.2e-11 Score=100.41 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=74.4
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--C-
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--A- 94 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~- 94 (174)
+.||||||++.|..++...+..+|++++|+|+++ ++++..+.. +.. .++|+++++||+|+...... .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCc
Confidence 6899999999999999989999999999999997 555554432 222 26899999999998521100 0
Q ss_pred -------------HH-------HHHHHHHHh---------------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 95 -------------TE-------DAQSYAERE---------------GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 95 -------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+ +........ .++++++||++|+|++++++.+....-
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 00 000111111 257899999999999999988765443
No 219
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.3e-11 Score=85.86 Aligned_cols=124 Identities=15% Similarity=0.273 Sum_probs=95.9
Q ss_pred CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
+||.. .+.++.+.+ ++++.+|.+|+-.-+..|..|+..+|+++|.+|+.|.+.|.+.+..+..+..... ..+|+++
T Consensus 49 vPTlHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~li 126 (193)
T KOG0077|consen 49 VPTLHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLI 126 (193)
T ss_pred CCCcCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCccee
Confidence 47777 555667766 7889999999999999999999999999999999999999988776666544432 5799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHH---Hh---C-----------CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAE---RE---G-----------LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~---~~---~-----------~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+||+|.+.. .++++.+.... .. + ++++.||...+.+..+.|.|+...
T Consensus 127 lgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 127 LGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 9999999863 45555433321 11 1 357889999888888888877653
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.29 E-value=4.5e-11 Score=88.90 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=55.1
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
++.+.++||||||+++|......+++.+|++++|||+++......... +..... .++|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCCcc
Confidence 447889999999999999999999999999999999998765544222 222222 257999999999985
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=7.7e-11 Score=89.99 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=80.3
Q ss_pred EEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745 20 KAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHAD--SNIVIMMIGNKTDL 87 (174)
Q Consensus 20 ~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 87 (174)
.+.+-|.||.-+- +.+ .-..+++++.++||+|++.. +.++.+..++.++..+.. .+.|.++|+||+|+
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 3899999995322 122 23446789999999999988 778887776677666554 57899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
++.. ...+.++++.+.-+ ++++||++++|++++++.|.+
T Consensus 325 ~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 325 PEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 6421 22347777777654 999999999999999887754
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.25 E-value=7.2e-11 Score=87.32 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=56.1
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
++..+.++||||||+.+|......++..+|++++|+|+++..++.. ..|+..... .++|+++++||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 3567889999999999998888899999999999999988765533 344444432 258999999999974
No 223
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.24 E-value=2.4e-10 Score=100.41 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=74.4
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC---
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--- 94 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--- 94 (174)
+.||||||++.|..+....+..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence 7999999999999888888899999999999987 44444432 2222 258999999999995321110
Q ss_pred ----------HHHHHHH----------HHH-------------h--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 95 ----------TEDAQSY----------AER-------------E--GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 95 ----------~~~~~~~----------~~~-------------~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.....++ ..+ + .++++++||++|+|+++++..+......
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 0001111 111 1 2578999999999999999877655443
No 224
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.24 E-value=1.6e-10 Score=81.19 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=69.5
Q ss_pred EEEEEeCCCch----------hhhhhhHHhhcc---CCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 20 KAQIWDTAGQE----------RYRAITSAYYRG---ALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 20 ~l~l~D~~G~~----------~~~~~~~~~~~~---~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.+.+|||+|.. .+......++.. .+++++++|.++.. ....+..|+... ..|+++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEc
Confidence 68899999943 345555666653 57889999988653 223334454432 4799999999
Q ss_pred CCCCCccCC--CHHHHHHHHH--HhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 85 TDLKHLRAV--ATEDAQSYAE--REGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 85 ~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+|+...... .........+ ....+++++||+++.++.++++++.+.
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 998532211 1122222222 233679999999999999999998765
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.22 E-value=3e-10 Score=84.72 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=70.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-- 93 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-- 93 (174)
...+.|.|+||+++|.......+. .+|++++|+|+.....- ....++..+... ++|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALAL---NIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEECccccCHHHHHH
Confidence 356899999999998765544453 68999999998865332 223344444333 5899999999998543221
Q ss_pred CHHHHHHHHHH------------------------h--CCcEEEEeccCCCCHHHHHHHHH
Q 043745 94 ATEDAQSYAER------------------------E--GLSFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 94 ~~~~~~~~~~~------------------------~--~~~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
...++..+... . ..+++.+||.+|+|++++...|.
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11222222221 0 14899999999999999887553
No 226
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.20 E-value=6.6e-10 Score=81.17 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=71.1
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 91 (174)
.+..+..++.|+||||+.+|.......+..+|++++|+|+...-.-. ..+.+..+... ++| +|+++||+|+....
T Consensus 59 ~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~ 134 (195)
T cd01884 59 EYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDE 134 (195)
T ss_pred EecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcH
Confidence 34444567899999999998887777888999999999998642222 22333444333 466 77889999985322
Q ss_pred CC---CHHHHHHHHHHhC-----CcEEEEeccCCCCH
Q 043745 92 AV---ATEDAQSYAEREG-----LSFIETSALEAINV 120 (174)
Q Consensus 92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 120 (174)
+. ..++++.+....+ ++++++||++|.|+
T Consensus 135 ~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 135 ELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 21 1234555555544 57999999999885
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.6e-10 Score=90.54 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=79.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
-.+.|.|||||+-|..++..=..=+|++|+|++++|. ++.+.+ ...+. .++|+++++||+|.++. ..
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~~---np 124 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPEA---NP 124 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCCC---CH
Confidence 3579999999999999999888899999999999983 444443 22233 37999999999999853 22
Q ss_pred HHHHHHHHHhC---------CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 96 EDAQSYAEREG---------LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 96 ~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.....-..++| ..++++||++|+|+.+++..++-..-.+
T Consensus 125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 22222222223 4689999999999999998777665544
No 228
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.18 E-value=2.7e-10 Score=82.76 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=67.8
Q ss_pred hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH-----HH
Q 043745 30 ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA-----ER 104 (174)
Q Consensus 30 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~ 104 (174)
+.+..++..+++++|++++|+|+.+... .|...+.... .+.|+++|+||+|+... ....+....+. ..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhh
Confidence 3457889999999999999999987531 1222222222 36899999999999653 33344444443 23
Q ss_pred hCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 105 EGL---SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 105 ~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+. +++++||+++.|++++++.+.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 333 6899999999999999999988653
No 229
>PRK12736 elongation factor Tu; Reviewed
Probab=99.18 E-value=5.7e-10 Score=89.77 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=68.5
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 91 (174)
.+......+.||||||+++|......-+..+|++++|+|+++...-. ..+++..+... ++| +|+++||+|+.+..
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchH
Confidence 34444567899999999998776666678899999999998642211 22333333332 567 67889999996432
Q ss_pred CCC---HHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745 92 AVA---TEDAQSYAEREG-----LSFIETSALEAI 118 (174)
Q Consensus 92 ~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~ 118 (174)
+.. .+++..+....+ ++++++||+++.
T Consensus 145 ~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 145 ELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 221 234555555555 479999999983
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.16 E-value=3.2e-10 Score=86.31 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCeEEEEEEEeCCCch------hhh------hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 15 EGRTIKAQIWDTAGQE------RYR------AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~------~~~------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
-....++.|+||||.- ++. ..-...+..||.++.|+|+++....-. ...+..+..+. .+|-++|.
T Consensus 116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvm 192 (379)
T KOG1423|consen 116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVM 192 (379)
T ss_pred ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeec
Confidence 3445689999999942 111 112345678999999999996322111 23344555553 58889999
Q ss_pred eCCCCCCccC-------------CCHHHHHHHHHHh-------------CC----cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRA-------------VATEDAQSYAERE-------------GL----SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 83 nK~Dl~~~~~-------------~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
||.|....+. ++... .++..++ |+ .+|.+||++|+|++++-++++.++.
T Consensus 193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~k-l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 193 NKIDKLKQKRLLLNLKDLLTNGELAKLK-LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred cchhcchhhhHHhhhHHhccccccchhh-hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 9999754321 11101 1111111 12 2899999999999999999887654
No 231
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.16 E-value=6.7e-10 Score=76.56 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=73.2
Q ss_pred EEEeCCCc----hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 22 QIWDTAGQ----ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 22 ~l~D~~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
.++||||. ..|....-....+||.++++.|++++.+.-. +.+.... +.|+|-|+||+|+... ....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPSD-DANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCccc-hhhHHH
Confidence 56999994 3455555556679999999999998643211 1222222 5799999999999842 334667
Q ss_pred HHHHHHHhCC-cEEEEeccCCCCHHHHHHHHH
Q 043745 98 AQSYAEREGL-SFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 98 ~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
.+++.+..|+ ++|++|+.+++|++++.+.|-
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 7888888886 589999999999999988763
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.15 E-value=8e-10 Score=88.95 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=69.1
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCCCc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGNKTDLKHL 90 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~ 90 (174)
+.+......+.||||||+++|..........+|++++|+|+.+...... .+.+..+... ++|. |+++||+|+.+.
T Consensus 68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCH
Confidence 3444555678999999999987766666678899999999987422221 2233333332 4665 468999998653
Q ss_pred cCCC---HHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745 91 RAVA---TEDAQSYAEREG-----LSFIETSALEAI 118 (174)
Q Consensus 91 ~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~ 118 (174)
.+.. .++++.++...+ ++++++||.++.
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 2221 235666666665 689999999875
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.15 E-value=3.7e-10 Score=92.06 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=75.5
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-eEEEEEeC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE-------NVSRWLKELRDHADSNI-VIMMIGNK 84 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-piilv~nK 84 (174)
.+......+.|+|+|||++|.......+..+|++|+|+|+++. .|+ ...+.+...... ++ ++|+++||
T Consensus 79 ~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNK 154 (447)
T PLN00043 79 KFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNK 154 (447)
T ss_pred EecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEc
Confidence 3455567899999999999999888889999999999999872 232 333333332222 45 57889999
Q ss_pred CCCCCcc------CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043745 85 TDLKHLR------AVATEDAQSYAEREG-----LSFIETSALEAINVEK 122 (174)
Q Consensus 85 ~Dl~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 122 (174)
+|+.... ....++++.++.+.| ++++++||.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9986210 011345666777666 5699999999999854
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.15 E-value=1.2e-09 Score=90.70 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=55.4
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+.+..+.+.++||||||+.+|......++..+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 72 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 72 MQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred EEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 34555568899999999999988777889999999999999875322 23344443332 378999999999974
No 235
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.2e-10 Score=93.62 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=87.6
Q ss_pred CCCCCcccee-----------------------EEEECCeEEEEEEEeCCCchhh------hhhhHHhh--ccCCEEEEE
Q 043745 1 MGQPRLGKLC-----------------------DFQVEGRTIKAQIWDTAGQERY------RAITSAYY--RGALGALLV 49 (174)
Q Consensus 1 ~g~pt~g~~~-----------------------~~~~~~~~~~l~l~D~~G~~~~------~~~~~~~~--~~~d~ii~v 49 (174)
+|+||+||+. +-.+..++.++++.|.||.-.. ....+.|+ .+.|+++-|
T Consensus 9 vGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnV 88 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNV 88 (653)
T ss_pred ecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEE
Confidence 5899999665 2233333445899999995322 23344444 367999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 50 YDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 50 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+|+++.+.--. .--++.+ .+.|++++.|+.|..+.+.+ .-+.+++.+.+|+|+++++|++|.|++++..++.+
T Consensus 89 vDAtnLeRnLy---ltlQLlE---~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 89 VDATNLERNLY---LTLQLLE---LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred cccchHHHHHH---HHHHHHH---cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 99998542221 1222223 27899999999999775433 34566778899999999999999999999888876
Q ss_pred HHHH
Q 043745 130 EIYR 133 (174)
Q Consensus 130 ~i~~ 133 (174)
....
T Consensus 162 ~~~~ 165 (653)
T COG0370 162 LAES 165 (653)
T ss_pred hccc
Confidence 4433
No 236
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.14 E-value=1.4e-09 Score=83.18 Aligned_cols=91 Identities=23% Similarity=0.212 Sum_probs=63.6
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
..+..+.+.++||||||+.+|......+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+....
T Consensus 64 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 64 MQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGRD 139 (267)
T ss_pred EEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCCC
Confidence 35566678899999999999988777888999999999999875322 22334443332 368999999999986532
Q ss_pred CCCHHHHHHHHHHhCCc
Q 043745 92 AVATEDAQSYAEREGLS 108 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~ 108 (174)
......++...++.+
T Consensus 140 --~~~~~~~l~~~l~~~ 154 (267)
T cd04169 140 --PLELLDEIEEELGID 154 (267)
T ss_pred --HHHHHHHHHHHHCCC
Confidence 122344445555543
No 237
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.14 E-value=5.8e-10 Score=90.98 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=74.2
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATE 96 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~ 96 (174)
.+.|+|+||+++|......-+..+|++++|+|+.+. ..-+ ..+.+..+... . -.++|++.||+|+.+.... ..+
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~q-T~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQ-TSEHLAAVEIM-K-LKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchh-hHHHHHHHHHc-C-CCcEEEEEecccccCHHHHHHHHH
Confidence 689999999999987777777899999999999863 1111 12222222222 1 2468999999999642221 112
Q ss_pred HHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 97 DAQSYAER---EGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 97 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+++... .+.+++++||++|.|++.+++.|.+.+
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 33333332 257899999999999999888777543
No 238
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.11 E-value=4.3e-10 Score=79.10 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 32 YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 32 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
|+.+++..++++|++++|+|+.++..... ..+...+.. .+.|+++|+||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 56778888889999999999987543222 122222221 2589999999999854211 11222333445678999
Q ss_pred EeccCCCCHHHHHHHHHHHHH
Q 043745 112 TSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 112 ~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+||+++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999998887664
No 239
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.10 E-value=2.2e-09 Score=83.95 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=93.4
Q ss_pred CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhcC-
Q 043745 2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENVSRWLKELRDHAD- 73 (174)
Q Consensus 2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~- 73 (174)
..||.|.. ++.+.-+.+.+.++|++||...+.-|.+++.+++++|||+++++.+ ..+++.+-+..+.....
T Consensus 179 R~~T~GI~-e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 179 RVPTTGIV-EVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred ccCcCCee-EEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 46899944 2344444488999999999999999999999999999999998633 23344333333333222
Q ss_pred ---CCCeEEEEEeCCCCCCc--------------c-CCCHHHHHHHHHHh----------CCcEEEEeccCCCCHHHHHH
Q 043745 74 ---SNIVIMMIGNKTDLKHL--------------R-AVATEDAQSYAERE----------GLSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 74 ---~~~piilv~nK~Dl~~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~v~~ 125 (174)
.+.++||+.||.||-++ . .-..+++..+.... .+-++.++|.+..+++.+|.
T Consensus 258 ~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~ 337 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFD 337 (354)
T ss_pred cccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHH
Confidence 57999999999998321 1 12333443333211 24467789999999999999
Q ss_pred HHHHHHHHHHh
Q 043745 126 TILSEIYRIIS 136 (174)
Q Consensus 126 ~l~~~i~~~~~ 136 (174)
.+.+.+.....
T Consensus 338 av~d~Ii~~nl 348 (354)
T KOG0082|consen 338 AVTDTIIQNNL 348 (354)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=99.10 E-value=1.7e-09 Score=87.15 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=67.6
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCCccC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRA 92 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~ 92 (174)
+.....++.|+||||+++|.......+..+|++++|+|+.+...-. ..+++..+... ++|.+ +++||+|+.+..+
T Consensus 70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHH
Confidence 3344457899999999998777667778999999999998743222 22333333322 57755 5799999964222
Q ss_pred C---CHHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745 93 V---ATEDAQSYAEREG-----LSFIETSALEAI 118 (174)
Q Consensus 93 ~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~ 118 (174)
. ...+++.++...+ ++++++||.++.
T Consensus 146 ~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeEEecchhccc
Confidence 1 1234555555543 678999999985
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.09 E-value=2e-10 Score=93.69 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=90.4
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcC--CCCeEEEEEeCCCCCCccCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHAD--SNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~ 93 (174)
..+...+.|++....-+.....-++.||++.+||+++++++++.+ ..|++.+++..+ .++|+|||+||.|+......
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 345689999987766666667788999999999999999999999 589999988774 47999999999999764433
Q ss_pred CHHH-HHHHHHHhC-C-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 94 ATED-AQSYAEREG-L-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 94 ~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+. ...+..++. + ..++|||++..++.++|...-+.+..
T Consensus 134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 2222 333333332 3 47899999999999999877666554
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.08 E-value=2.5e-09 Score=82.63 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=80.4
Q ss_pred EEEEEeCCCchhh----hhhhH---HhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCC
Q 043745 20 KAQIWDTAGQERY----RAITS---AYYRGALGALLVYDVTKPT---TFENVSRWLKELRDHAD--SNIVIMMIGNKTDL 87 (174)
Q Consensus 20 ~l~l~D~~G~~~~----~~~~~---~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 87 (174)
.+.+-|.||.-+- ..+.. ..++++.++++|+|++..+ ..++...+..++..+.. .+.|.+||+||+|+
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 4788999985321 12223 3456789999999998654 36666666677766654 67899999999997
Q ss_pred CCccCCCHHHHHHHHHHhCCcEE-EEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFI-ETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
....+......+.+.+..++..+ .+||.+++|++++...+.+.+....
T Consensus 288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 54333223334444445554432 2999999999999999988887775
No 243
>PRK09866 hypothetical protein; Provisional
Probab=99.07 E-value=3.9e-09 Score=88.03 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=73.7
Q ss_pred EEEEEEeCCCchh-----hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745 19 IKAQIWDTAGQER-----YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 93 (174)
.++.|+||||... ........+..+|+|+||+|+.+..+..+ ...+..+.... ...|+++|+||+|+.+...-
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 4689999999753 23344557899999999999987433332 12334443332 23699999999998643222
Q ss_pred CHHHHHHHHHH----hC---CcEEEEeccCCCCHHHHHHHHHH
Q 043745 94 ATEDAQSYAER----EG---LSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 94 ~~~~~~~~~~~----~~---~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..+....+... .+ ..++++||++|.|++.+++.+..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 24455555432 12 25999999999999999998776
No 244
>PRK12289 GTPase RsgA; Reviewed
Probab=99.07 E-value=8.2e-10 Score=87.28 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=68.7
Q ss_pred hhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEE
Q 043745 34 AITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET 112 (174)
Q Consensus 34 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (174)
.+.+..+.++|.+++|+|+.+++ +...+..|+..+.. .++|++||+||+||.+..+ .+...+....+|+.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34556689999999999998765 55566788776533 3689999999999964211 122233345678899999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 043745 113 SALEAINVEKAFQTILSE 130 (174)
Q Consensus 113 Sa~~~~~i~~v~~~l~~~ 130 (174)
||+++.|++++++.+...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988654
No 245
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.4e-09 Score=85.61 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=78.4
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
-.+.|.|||||.-|..|+..-..-.|++++|+.++|. ++.+. |.+....++|+++.+||+|.++. +.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDkp~a---~p 270 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDKPGA---NP 270 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCCCCC---CH
Confidence 5679999999999999999988899999999999884 44433 33333358999999999998753 23
Q ss_pred HHH-HHHH------HHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 96 EDA-QSYA------EREG--LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 96 ~~~-~~~~------~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+.. +++. +++| ++++++||++|.|++.+.++++-++-
T Consensus 271 ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 271 EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 333 3332 3343 57999999999999998887765543
No 246
>PRK00098 GTPase RsgA; Reviewed
Probab=99.06 E-value=2.3e-09 Score=83.20 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=65.1
Q ss_pred hccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043745 40 YRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI 118 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 118 (174)
..++|.+++|+|+.+++.+.. +.+|+..+.. .++|+++|+||+||.+..+ ...+.......++++++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 489999999999988765444 4778776644 3689999999999963222 1223444556678899999999999
Q ss_pred CHHHHHHHHHH
Q 043745 119 NVEKAFQTILS 129 (174)
Q Consensus 119 ~i~~v~~~l~~ 129 (174)
|++++++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999987753
No 247
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.04 E-value=3.5e-09 Score=81.40 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=79.4
Q ss_pred ECCeEEEEEEEeCCCchh--------hhhhhHHhhc-cCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 14 VEGRTIKAQIWDTAGQER--------YRAITSAYYR-GALGALLVYDVTK--PTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~-~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
++.+..+++++||||.-+ .....-..++ =.++|+|+||.+. ..+.+.-..++..+.... ..|+++|.
T Consensus 210 fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~ 287 (346)
T COG1084 210 FERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVI 287 (346)
T ss_pred eecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEE
Confidence 344456899999999421 1111111222 3689999999985 366777677778887665 38999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
||+|+.+...+ ++.......-+ .....+++..+.+++.+-..+...+.+...+
T Consensus 288 nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~~~e 341 (346)
T COG1084 288 NKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLE 341 (346)
T ss_pred ecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhchhhh
Confidence 99999753332 33333344444 4578889999999998888777776554433
No 248
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.03 E-value=1.5e-09 Score=83.87 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=67.8
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCC
Q 043745 39 YYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA 117 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 117 (174)
.+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+||.+.. .......+....+++++.+||+++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCC
Confidence 478999999999999887 888888898876543 68999999999996531 112233334557889999999999
Q ss_pred CCHHHHHHHHHH
Q 043745 118 INVEKAFQTILS 129 (174)
Q Consensus 118 ~~i~~v~~~l~~ 129 (174)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999887764
No 249
>PRK13351 elongation factor G; Reviewed
Probab=99.03 E-value=5.3e-09 Score=89.71 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=57.3
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+......++||||||+.+|...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 68 ~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 68 CDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 334457899999999999999999999999999999999987666554444 33333 2689999999999853
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=4e-09 Score=85.20 Aligned_cols=104 Identities=26% Similarity=0.186 Sum_probs=68.6
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~ 94 (174)
....++.||||||+++|.......+..+|++++|+|+.....-+....| ..+.... ..++++++||+|+.+... ..
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~ 153 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVF 153 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHH
Confidence 3445789999999999977666778899999999999764322211122 2222221 236889999999964221 10
Q ss_pred ---HHHHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043745 95 ---TEDAQSYAEREG---LSFIETSALEAINVEK 122 (174)
Q Consensus 95 ---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 122 (174)
.++...+....+ ++++++||++|.|+++
T Consensus 154 ~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 154 ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333444444 4699999999999885
No 251
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.01 E-value=2.5e-09 Score=85.12 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=71.7
Q ss_pred CchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHH----HHH
Q 043745 28 GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQS----YAE 103 (174)
Q Consensus 28 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~ 103 (174)
..++|..+...+++.++++++|+|+.+.+ ..|...+..... +.|+++|+||+|+.+ +....++... +++
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHH
Confidence 35678889999999999999999997653 234455554443 679999999999965 3333444443 355
Q ss_pred HhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745 104 REGL---SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 104 ~~~~---~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..++ .++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6676 48999999999999999988653
No 252
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-09 Score=85.47 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=80.8
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
|...++.+..+++++|||||.+|.......+.-.|++++++|+.+..=- ..+-.+..... .+.+.|+|+||+|.+.
T Consensus 59 KnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~---~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 59 KNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALA---LGLKPIVVINKIDRPD 134 (603)
T ss_pred ccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHH---cCCCcEEEEeCCCCCC
Confidence 3445666668999999999999999999999999999999999874211 11111222222 2566778889999987
Q ss_pred ccCC-CHHHHHHHH-------HHhCCcEEEEeccCC----------CCHHHHHHHHHHHHHH
Q 043745 90 LRAV-ATEDAQSYA-------EREGLSFIETSALEA----------INVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~~~~-~~~~~~~~~-------~~~~~~~~~~Sa~~~----------~~i~~v~~~l~~~i~~ 133 (174)
.+.- -..+...+. ++++.+++..||+.| .++..+|+.+++.+..
T Consensus 135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 5521 123333333 345678999999877 3466666666665544
No 253
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.99 E-value=2.8e-09 Score=87.56 Aligned_cols=107 Identities=24% Similarity=0.144 Sum_probs=68.6
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 93 (174)
+.....++.||||||+++|.......+..+|++++|+|+.....-.....| ..+... . ..|+|+++||+|+.+....
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhH
Confidence 344456789999999999976665667999999999999764211111111 112222 1 2478899999999642211
Q ss_pred CH----HHHHHHHHHhC----CcEEEEeccCCCCHHHH
Q 043745 94 AT----EDAQSYAEREG----LSFIETSALEAINVEKA 123 (174)
Q Consensus 94 ~~----~~~~~~~~~~~----~~~~~~Sa~~~~~i~~v 123 (174)
.. ++...+....+ .+++++||+++.|+.+.
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11 12223333333 67999999999998864
No 254
>PRK12740 elongation factor G; Reviewed
Probab=98.98 E-value=1.9e-08 Score=86.16 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.+.||||||+.+|...+..++..+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 447899999999999888888899999999999999887655544333 33333 268999999999985
No 255
>COG2262 HflX GTPases [General function prediction only]
Probab=98.98 E-value=2.2e-08 Score=79.15 Aligned_cols=124 Identities=17% Similarity=0.141 Sum_probs=83.5
Q ss_pred ceeEEEECCeEEEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 78 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 78 (174)
+++.+.+.+ +..+.+-||-|- +.|+++... ...+|.++.|+|++++...+.+..-...+....-.++|+
T Consensus 230 ttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~ 307 (411)
T COG2262 230 TTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPI 307 (411)
T ss_pred ceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCE
Confidence 344555553 345788899883 234444443 357999999999999976666655545555544356999
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
|+|.||+|+..... .......... ..+.+||+++.|++.+++.|...+......-
T Consensus 308 i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 308 ILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred EEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccce
Confidence 99999999754222 1222222222 5889999999999999999888877654333
No 256
>PRK12288 GTPase RsgA; Reviewed
Probab=98.97 E-value=5.4e-09 Score=82.61 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=67.5
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHHHHHHHHHHhCCcEEEEeccCCC
Q 043745 40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATEDAQSYAEREGLSFIETSALEAI 118 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 118 (174)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+||.+.... ...+.......++++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3579999999999888899999999875543 36899999999999653211 1122333345678899999999999
Q ss_pred CHHHHHHHHHHH
Q 043745 119 NVEKAFQTILSE 130 (174)
Q Consensus 119 ~i~~v~~~l~~~ 130 (174)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 257
>PRK13768 GTPase; Provisional
Probab=98.96 E-value=7.3e-09 Score=78.63 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=70.6
Q ss_pred EEEEEeCCCchhh---hhhhHHhhcc-----CCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 20 KAQIWDTAGQERY---RAITSAYYRG-----ALGALLVYDVTKPTTFENV--SRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 20 ~l~l~D~~G~~~~---~~~~~~~~~~-----~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+||+||+.++ +..+..+++. .++++|++|+......... ..|+....... .+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 5789999998763 3344334333 8999999999764333222 23333222222 3689999999999865
Q ss_pred ccCCCHHHHHH----------------------------HHHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQS----------------------------YAEREG--LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..+. ++... ..+..+ .+++++|++++.|++++++++.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 11111 122334 5789999999999999999987765
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.95 E-value=1e-08 Score=80.14 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHH-HHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQ-TILSEIY 132 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~-~l~~~i~ 132 (174)
.+|+|+++||.|+..... ....+.... ..+++.+||+.+.+++++.+ .+++.+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 479999999999853221 112222233 45799999999999999887 4766653
No 259
>CHL00071 tufA elongation factor Tu
Probab=98.95 E-value=1.4e-08 Score=82.08 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=69.0
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC-
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV- 93 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~- 93 (174)
.+..++.|.||||+.+|.......+..+|++++|+|+..... ....+.+..+... ++| +|+++||+|+.+..+.
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~ 147 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELL 147 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHH
Confidence 344568899999999988777777889999999999986432 2222333333332 567 7788999999753221
Q ss_pred --CHHHHHHHHHHhC-----CcEEEEeccCCCCH
Q 043745 94 --ATEDAQSYAEREG-----LSFIETSALEAINV 120 (174)
Q Consensus 94 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 120 (174)
..+++..+....+ ++++++||.++.++
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 1234555555544 57999999988753
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.93 E-value=9.9e-09 Score=83.79 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=71.5
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEeCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIV-IMMIGNKT 85 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iilv~nK~ 85 (174)
.+......+.|+|+||+.+|.......+..+|++++|+|+++.. .+ ....+.+..+... ++| +|+++||+
T Consensus 79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKm 155 (446)
T PTZ00141 79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKM 155 (446)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcc
Confidence 34555678999999999999888888889999999999998642 01 1222333333332 455 77899999
Q ss_pred CCCC--c-c---CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043745 86 DLKH--L-R---AVATEDAQSYAEREG-----LSFIETSALEAINVEK 122 (174)
Q Consensus 86 Dl~~--~-~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 122 (174)
|+.. . + +...+++..+....+ ++++++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9532 0 0 111233444444443 5689999999999864
No 261
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.92 E-value=1e-08 Score=76.63 Aligned_cols=114 Identities=20% Similarity=0.339 Sum_probs=73.2
Q ss_pred EEEEEEEeCCCchhhh-----hhhHHhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYR-----AITSAYYRGALGALLVYDVTKPT---TFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+++||+||+..+. ......+++++++|||+|+.+.+ .+..+...+..+.++.+ ++.+.++.+|+|+..
T Consensus 47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLS 125 (232)
T ss_dssp SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-
T ss_pred CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCC
Confidence 3579999999997553 34788899999999999998544 33444555666666655 899999999999854
Q ss_pred c--cCCC----HHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 90 L--RAVA----TEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~--~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+ +... .+.+.+.+...+ +.++.+|.-+ +.+-+.|..+++.+..
T Consensus 126 ~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 126 EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 2 1111 122333444555 5677777654 5777777777766554
No 262
>PRK00049 elongation factor Tu; Reviewed
Probab=98.90 E-value=4.7e-08 Score=78.82 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=67.0
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCCccC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKHLRA 92 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~ 92 (174)
+.....++.|.||||+.+|.......+..+|++++|+|+.+... ....+++..+... ++|.+ +++||+|+.+...
T Consensus 70 ~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~ 145 (396)
T PRK00049 70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred EcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHH
Confidence 33344578899999999887777777899999999999986422 2223334444333 57865 5799999964222
Q ss_pred C---CHHHHHHHHHHhC-----CcEEEEeccCCC
Q 043745 93 V---ATEDAQSYAEREG-----LSFIETSALEAI 118 (174)
Q Consensus 93 ~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~ 118 (174)
. ...++..+....+ ++++.+||+++.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 146 LLELVEMEVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCcEEEeeccccc
Confidence 1 1123444444433 579999999875
No 263
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.89 E-value=1.2e-08 Score=78.07 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=53.2
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+..++.||||||+.+|...+..+++.+|++++|+|+.+...-.. ..++..+.. .++|+++++||+|+..
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 45778999999999998889999999999999999987532222 233333333 2689999999999974
No 264
>PLN03127 Elongation factor Tu; Provisional
Probab=98.87 E-value=4.9e-08 Score=79.74 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=62.1
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 91 (174)
.+.....++.|.||||+.+|.......+..+|++++|+|+.+...-+ ..+.+..+... ++| +|+++||+|+.+..
T Consensus 118 ~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~ 193 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDE 193 (447)
T ss_pred EEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHH
Confidence 34444567899999999988766656667899999999997643221 22333333332 578 57889999996422
Q ss_pred CCCH---HHHHHHHHHh-----CCcEEEEecc
Q 043745 92 AVAT---EDAQSYAERE-----GLSFIETSAL 115 (174)
Q Consensus 92 ~~~~---~~~~~~~~~~-----~~~~~~~Sa~ 115 (174)
+... .+.+++.... .++++.+||.
T Consensus 194 ~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~ 225 (447)
T PLN03127 194 ELLELVEMELRELLSFYKFPGDEIPIIRGSAL 225 (447)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcceEEEeccc
Confidence 2111 1233333332 2578888875
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.85 E-value=3.2e-08 Score=84.22 Aligned_cols=103 Identities=25% Similarity=0.214 Sum_probs=67.5
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-cCC--
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL-RAV-- 93 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~-- 93 (174)
...++.|+||||+++|.......+..+|++++|+|+.....-. ..+.+..+.... ..++++++||+|+.+. ...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence 3456789999999998776666788999999999997642211 111222222221 2578899999999641 111
Q ss_pred -CHHHHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043745 94 -ATEDAQSYAEREG---LSFIETSALEAINVEK 122 (174)
Q Consensus 94 -~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 122 (174)
...+..++...++ .+++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1122333445555 4699999999999874
No 266
>PLN03126 Elongation factor Tu; Provisional
Probab=98.85 E-value=3.2e-08 Score=81.30 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=69.3
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRAV 93 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~ 93 (174)
..+...+.|+|+||+++|.......+..+|++++|+|+.+...-. ..+++..+... ++| +++++||+|+.+..+.
T Consensus 140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~ 215 (478)
T PLN03126 140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEEL 215 (478)
T ss_pred ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHH
Confidence 334457899999999999887777778999999999998653222 23444444333 567 7889999999652221
Q ss_pred ---CHHHHHHHHHHh-----CCcEEEEeccCCCC
Q 043745 94 ---ATEDAQSYAERE-----GLSFIETSALEAIN 119 (174)
Q Consensus 94 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~ 119 (174)
..++++.+.... .++++++||.++.+
T Consensus 216 ~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 216 LELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 112445555554 35799999988854
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.84 E-value=3.6e-08 Score=81.94 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=56.6
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.++.+.+.++||||||+.+|......++..+|++|+|+|+++.-. .....++..... .++|+++++||+|+..
T Consensus 72 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 34566777899999999999988877778899999999999987421 122344443332 3689999999999864
No 268
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.81 E-value=6.6e-08 Score=77.78 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCCccce-eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHH---HHHHHHHHhh
Q 043745 3 QPRLGKL-CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENV---SRWLKELRDH 71 (174)
Q Consensus 3 ~pt~g~~-~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~---~~~~~~i~~~ 71 (174)
.+|.|.. ..+.++ ....+.|+|++|+...++.|..++.++++||||+++++.+ ..+++ ...+..+...
T Consensus 220 ~~T~Gi~e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 220 VKTTGITEIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ---SSEEEEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred CCCCCeeEEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 4778833 334441 4477899999999999999999999999999999987532 12233 3333444332
Q ss_pred cC-CCCeEEEEEeCCCCCCc----------------c--CCCHHHHHHHHHHh------------CCcEEEEeccCCCCH
Q 043745 72 AD-SNIVIMMIGNKTDLKHL----------------R--AVATEDAQSYAERE------------GLSFIETSALEAINV 120 (174)
Q Consensus 72 ~~-~~~piilv~nK~Dl~~~----------------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i 120 (174)
.- .+.|+||+.||.|+-.+ . .-+.+.+..+.... .+.++.++|.+..++
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 22 57999999999996210 1 12344555554322 124668899988899
Q ss_pred HHHHHHHHHHH
Q 043745 121 EKAFQTILSEI 131 (174)
Q Consensus 121 ~~v~~~l~~~i 131 (174)
..+|+.+.+.|
T Consensus 379 ~~v~~~v~~~i 389 (389)
T PF00503_consen 379 RKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcC
Confidence 99999887654
No 269
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.1e-08 Score=80.81 Aligned_cols=135 Identities=22% Similarity=0.272 Sum_probs=85.3
Q ss_pred CCCCCcccee------------------------EEEECCeEEEEEEEeCCCchh-hhh--------hhHHhhccCCEEE
Q 043745 1 MGQPRLGKLC------------------------DFQVEGRTIKAQIWDTAGQER-YRA--------ITSAYYRGALGAL 47 (174)
Q Consensus 1 ~g~pt~g~~~------------------------~~~~~~~~~~l~l~D~~G~~~-~~~--------~~~~~~~~~d~ii 47 (174)
+|+||+||+. +..++-+++.+.|.||+|..+ -.. .....++.+|+++
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~ 353 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL 353 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence 5899999766 334444457889999999765 111 1344567899999
Q ss_pred EEEeC--CChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCCCCc-cCCCHHHHHHHHHHhC---Cc-EEEEec
Q 043745 48 LVYDV--TKPTTFENVSRWLKELRDHAD------SNIVIMMIGNKTDLKHL-RAVATEDAQSYAEREG---LS-FIETSA 114 (174)
Q Consensus 48 ~v~d~--~~~~s~~~~~~~~~~i~~~~~------~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa 114 (174)
||+|+ ++.++...+.+.+.....-.. ...|++++.||.|+... .+..... ..+....+ .+ +.++|+
T Consensus 354 ~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~ 432 (531)
T KOG1191|consen 354 LVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSC 432 (531)
T ss_pred EEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcccceEEEeee
Confidence 99999 444444444444444322111 23789999999998653 1111111 11111122 34 456999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHh
Q 043745 115 LEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 115 ~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
++++|++.+.+.+...+.....
T Consensus 433 ~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 433 TTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred chhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999998888777654
No 270
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.80 E-value=1.1e-07 Score=72.66 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=62.5
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
....+.||||||+.+|...+..++..+|++++|+|+++.........| ..+.. .++|+++++||+|+... ....
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~ 135 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDK 135 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHH
Confidence 446789999999999888888899999999999999986544433333 23332 26899999999998753 1223
Q ss_pred HHHHHHHHhCCcEE
Q 043745 97 DAQSYAEREGLSFI 110 (174)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (174)
....+...++.+++
T Consensus 136 ~~~~l~~~~~~~~~ 149 (268)
T cd04170 136 TLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHHhCCCeE
Confidence 44455555665444
No 271
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.80 E-value=1.3e-07 Score=68.35 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=71.4
Q ss_pred EEEEeCCC----------chhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 21 AQIWDTAG----------QERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 21 l~l~D~~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
+.|+|.|| ++.+..+...|++. ..++++++|+.....-.+. +.+..+... ++|+++++||+|.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DK 147 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADK 147 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEcccc
Confidence 78999998 56677778888764 5688889999876433222 222323332 7899999999998
Q ss_pred CCccCCCHHHHHHHHHHhC----Cc--EEEEeccCCCCHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREG----LS--FIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
-...+. .......+..++ .. ++..|+.++.|++++...|.+.+.
T Consensus 148 i~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 148 LKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 653222 122233333332 22 778899999999999888877654
No 272
>PRK12739 elongation factor G; Reviewed
Probab=98.75 E-value=1.9e-07 Score=80.30 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=52.7
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+..++.|+||||+.+|...+...+..+|++++|+|+.+...-... ..+..+.. .++|+|+++||+|+..
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 346789999999999888889999999999999999875433322 23333333 2689999999999853
No 273
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=9e-08 Score=82.21 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=65.1
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
++..+.||||||+.+|...+..++..+|+++||+|+.+........ ++..+... ++|+++++||+|+.... -..
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~ivviNK~D~~~~~--~~~ 146 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY---EVPRIAFVNKMDKTGAN--FLR 146 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc---CCCEEEEEECCCCCCCC--HHH
Confidence 4578899999999998888889999999999999998865444332 33333332 68999999999997532 123
Q ss_pred HHHHHHHHhCC----cEEEEeccCC
Q 043745 97 DAQSYAEREGL----SFIETSALEA 117 (174)
Q Consensus 97 ~~~~~~~~~~~----~~~~~Sa~~~ 117 (174)
....+...++. ..+.+|+..+
T Consensus 147 ~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 147 VVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHHHhCCCceeEEeccccCCC
Confidence 34444454443 2455555444
No 274
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7.6e-08 Score=69.95 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=73.8
Q ss_pred EEEEeCCCchhhhhhhHHhhc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCccC-
Q 043745 21 AQIWDTAGQERYRAITSAYYR---GALGALLVYDVTKP-TTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHLRA- 92 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~- 92 (174)
++++|.|||++.+.....+++ .+-+++||+|..-. ....++.+++-.+.... ...+|++++.||+|+...+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence 789999999999887777777 79999999998743 34555555554443322 35689999999999843211
Q ss_pred -----CCHHHHHHHH--------------------------------HHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 93 -----VATEDAQSYA--------------------------------EREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 93 -----~~~~~~~~~~--------------------------------~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.-+.|+..+. ....+.+.++|++++ +++++.+|+.+.
T Consensus 164 ~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 164 EKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111111111 112345888999988 899999988764
No 275
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.72 E-value=2.5e-07 Score=67.58 Aligned_cols=108 Identities=11% Similarity=0.133 Sum_probs=64.9
Q ss_pred EEEEEeCCCchhhhhhhH-----HhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-
Q 043745 20 KAQIWDTAGQERYRAITS-----AYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRA- 92 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~- 92 (174)
.+.+||++|......... ..+.++|+++++.+- ++... ..|+..+... +.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence 589999999754322222 226678998888432 23333 3455555544 579999999999842111
Q ss_pred ----------CCHHHHHHHHH----HhC--C-cEEEEecc--CCCCHHHHHHHHHHHHHHH
Q 043745 93 ----------VATEDAQSYAE----REG--L-SFIETSAL--EAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 93 ----------~~~~~~~~~~~----~~~--~-~~~~~Sa~--~~~~i~~v~~~l~~~i~~~ 134 (174)
...++.++.+. ..+ . ++|-+|+. .+.++..+.+.|+..+...
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 01111222221 212 2 58888887 4678888888888877653
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.71 E-value=6.5e-08 Score=69.50 Aligned_cols=72 Identities=24% Similarity=0.384 Sum_probs=48.8
Q ss_pred EEEEEEeCCCchhhhhh-hHH--hhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRAI-TSA--YYRGALGALLVYDVTK-PTTFENVSRWLKELRDHA---DSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~-~~~--~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~ 90 (174)
-.+.++|+|||.+.+.. ... +...+.+||||+|.+. ...+.++.+++-.+.... ...+|++|++||+|+...
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 35789999999988763 333 5889999999999975 345666655544443222 257999999999999764
No 277
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=1.1e-07 Score=66.97 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred hhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745 39 YYRGALGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE 116 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 116 (174)
.++++|.+++|+|+.++.. ...+.+++. .. ..+.|+++|+||+|+.+...+ ......+...+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999988632 223333332 22 235899999999999642211 1112222222222357899999
Q ss_pred CCCHHHHHHHHHHHH
Q 043745 117 AINVEKAFQTILSEI 131 (174)
Q Consensus 117 ~~~i~~v~~~l~~~i 131 (174)
+.|++++++.+.+..
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998886653
No 278
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=2.4e-07 Score=65.13 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=55.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745 44 LGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEK 122 (174)
Q Consensus 44 d~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 122 (174)
|.+++|+|+.++.+... .|+. .... ..++|+++|+||+|+.+..++ .+....+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK--EKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh--cCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 78999999988755442 2333 1111 136899999999999542111 1111123233356789999999999999
Q ss_pred HHHHHHHHHH
Q 043745 123 AFQTILSEIY 132 (174)
Q Consensus 123 v~~~l~~~i~ 132 (174)
+++.+.+...
T Consensus 76 L~~~i~~~~~ 85 (155)
T cd01849 76 KESAFTKQTN 85 (155)
T ss_pred HHHHHHHHhH
Confidence 9998877654
No 279
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.8e-07 Score=73.09 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=71.9
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+......+.++|+||+.+|.+..-.-..+||+.|||+|+.+.+ .|. ..++.+...+. .+ -..+|++.||+|
T Consensus 79 ~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lG-i~~lIVavNKMD 156 (428)
T COG5256 79 KFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LG-IKQLIVAVNKMD 156 (428)
T ss_pred EeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cC-CceEEEEEEccc
Confidence 45555678999999999999887777778999999999998764 111 12222222222 22 246888899999
Q ss_pred CCCccCCCH----HHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745 87 LKHLRAVAT----EDAQSYAEREG-----LSFIETSALEAINVEKA 123 (174)
Q Consensus 87 l~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v 123 (174)
+.+-++--. .+...+.+..| ++|+++||..|.|+.+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 975211111 22233444444 46999999999997653
No 280
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=2.4e-07 Score=64.09 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEec
Q 043745 37 SAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
...++++|++++|+|+.++.+.. .+.+|+... . .+.|+++|+||+|+.++.. ..+..++....+..++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 44578999999999998876543 344454432 1 3689999999999964221 22344455566788999999
Q ss_pred cCCCC
Q 043745 115 LEAIN 119 (174)
Q Consensus 115 ~~~~~ 119 (174)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 87753
No 281
>PRK13796 GTPase YqeH; Provisional
Probab=98.59 E-value=5.8e-07 Score=71.74 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=63.2
Q ss_pred hhhhhhhHHhhccCC-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----HHH
Q 043745 30 ERYRAITSAYYRGAL-GALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----AER 104 (174)
Q Consensus 30 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 104 (174)
++|....... ...+ .+++|+|+.|.. ..|...+..... +.|+++|+||+||.+ +....++...+ ++.
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence 4555554444 4444 999999997743 234455544433 679999999999965 33334444433 455
Q ss_pred hCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745 105 EGL---SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 105 ~~~---~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 565 58999999999999999988654
No 282
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.55 E-value=1.9e-06 Score=66.50 Aligned_cols=112 Identities=22% Similarity=0.197 Sum_probs=75.0
Q ss_pred ECCeEEEEEEEeCCCchhh-------hhhhHHhhccCCEEEEEEeCCChhh-HHHHHHHHH-------------------
Q 043745 14 VEGRTIKAQIWDTAGQERY-------RAITSAYYRGALGALLVYDVTKPTT-FENVSRWLK------------------- 66 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~------------------- 66 (174)
+.+++.++++.|+||.-.- ....-...+.||.+++|+|+..... .+.+.+.+.
T Consensus 105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~ 184 (365)
T COG1163 105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE 184 (365)
T ss_pred EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence 3556688999999984321 1234456789999999999986554 333322222
Q ss_pred -------------------------HHHhhc-------------------C--CCCeEEEEEeCCCCCCccCCCHHHHHH
Q 043745 67 -------------------------ELRDHA-------------------D--SNIVIMMIGNKTDLKHLRAVATEDAQS 100 (174)
Q Consensus 67 -------------------------~i~~~~-------------------~--~~~piilv~nK~Dl~~~~~~~~~~~~~ 100 (174)
+..-+. . .-+|.++|.||+|+.. .++...
T Consensus 185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~ 259 (365)
T COG1163 185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER 259 (365)
T ss_pred cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence 100000 0 1379999999999965 344555
Q ss_pred HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 101 YAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 101 ~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+.+.. .++.+||+++.|++++.+.|.+.+-
T Consensus 260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 LARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 55444 8899999999999999988887653
No 283
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.6e-07 Score=77.82 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=82.4
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc------c
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL------R 91 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------~ 91 (174)
+.++||||++.|..++.....-||.+|+|+|+... ++.+.+ +.++.. +.|+||..||+|..-. .
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~r---ktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRMR---KTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHhc---CCCeEEeehhhhhhcccccCCCc
Confidence 78999999999999999999999999999999853 444432 334433 7899999999996210 0
Q ss_pred C-------CCHH-----------HHHHHHHH-hC-------------CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 92 A-------VATE-----------DAQSYAER-EG-------------LSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 92 ~-------~~~~-----------~~~~~~~~-~~-------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
. .... .+.+|+.+ ++ +.++++||.+|+||-+++-+|++.....|.++-
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 0011 11222221 11 247899999999999999999999999887775
Q ss_pred CCC
Q 043745 140 LSS 142 (174)
Q Consensus 140 ~~~ 142 (174)
...
T Consensus 695 ~y~ 697 (1064)
T KOG1144|consen 695 AYV 697 (1064)
T ss_pred hhh
Confidence 443
No 284
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.54 E-value=4.2e-07 Score=64.92 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=63.0
Q ss_pred hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 31 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 31 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
+........++++|.+++|+|+.++..... ..++..+ .+.|+++|+||+|+.+... .....++....+..++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 344556777899999999999986543221 1122221 2478999999999964211 1122223333456789
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q 043745 111 ETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 111 ~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.+||+++.|++++.+.+...+..
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999988887643
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.52 E-value=1.6e-06 Score=63.54 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=64.8
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
....+.++.|..--..... .+ +|.+|.|+|+.+.++... .+..++ ...=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4456788888432122222 22 688999999987655321 111222 112278889999974222223444
Q ss_pred HHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 99 QSYAERE--GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 99 ~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+.++.+ +.+++++||++|+|++++|+++.+..+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4455543 478999999999999999999987643
No 286
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.50 E-value=5.1e-07 Score=73.17 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=82.8
Q ss_pred ECCeEEEEEEEeCCCchhhh----hh-----hHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 14 VEGRTIKAQIWDTAGQERYR----AI-----TSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~----~~-----~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
++.+=.++++.||||.-+-. .. +....+=--+|+|+.|++.. .|...--.++..|.-.. .+.|+|+|+
T Consensus 210 ~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~Ilvl 288 (620)
T KOG1490|consen 210 LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVL 288 (620)
T ss_pred hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEe
Confidence 35555688999999953221 01 11111123478889999863 56655555566665433 378999999
Q ss_pred eCCCCCCccCCCHHHH---HHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 83 NKTDLKHLRAVATEDA---QSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
||+|+.....++++.. ..+...-+++++++|..+.+|+-+|-....+.++...-+.
T Consensus 289 NK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490|consen 289 NKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred ecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHH
Confidence 9999977666665443 3334444589999999999999998888887777664433
No 287
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.49 E-value=1.8e-06 Score=69.50 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH-HHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEK-AFQTILS 129 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-v~~~l~~ 129 (174)
.+|+|+|+||.|+.... +....+.+..+..++.+||+.+.++++ +++.+++
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 48999999999975321 112333333345789999999999887 4444433
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.47 E-value=8.2e-07 Score=59.40 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=72.7
Q ss_pred EEeCCC----chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 23 IWDTAG----QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 23 l~D~~G----~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..|||| +..+++.......++|++++|-.+.++++.-. ..+.... ..|+|-|++|.||.+.. ..+..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDA--DISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----ccccccc--ccceEEEEecccccchH--hHHHH
Confidence 478888 34555556666789999999999998754321 2233332 45699999999998633 35677
Q ss_pred HHHHHHhCC-cEEEEeccCCCCHHHHHHHHHH
Q 043745 99 QSYAEREGL-SFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 99 ~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+.|..+.|. ++|++|+.++.|+++++..+..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 888888885 6999999999999999987654
No 289
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=1.3e-06 Score=67.24 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=66.1
Q ss_pred CCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 26 TAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 26 ~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
.|||- .........++.+|++++|+|+.++.+... .++..+. .+.|+|+|.||+|+.+... .....+....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 35554 233456677889999999999977644322 1112211 1579999999999954211 1122222333
Q ss_pred hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 105 EGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+.+++.+||+++.|++++.+.+.+.+...
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 566789999999999999998887776543
No 290
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.45 E-value=8.6e-07 Score=76.55 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=54.7
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+.+++..+.++||||||+.+|.......+..+|++++|+|+.+.-..+....| ..... .+.|+++++||+|..
T Consensus 79 ~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 79 HEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred EeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 34677789999999999999988888899999999999999874222222222 22222 257888999999985
No 291
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.44 E-value=4.1e-06 Score=63.04 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=75.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-------hHHHHHH---HHHHHHhhc-CCCCeEEEEEeCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-------TFENVSR---WLKELRDHA-DSNIVIMMIGNKT 85 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~---~~~~i~~~~-~~~~piilv~nK~ 85 (174)
..+.++++|++||.+-+..|-+++.+..++|||..+++.. +-+++.+ ++..+.+.. ...+.+|++.||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3477999999999999999999999999999999887521 2222322 222222211 1357899999999
Q ss_pred CCCCcc------------------------------CCCHHHHHHHHHHh-------------CCcEEEEeccCCCCHHH
Q 043745 86 DLKHLR------------------------------AVATEDAQSYAERE-------------GLSFIETSALEAINVEK 122 (174)
Q Consensus 86 Dl~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~Sa~~~~~i~~ 122 (174)
|+..++ ....-.++.+.+.. -+-+++++|.+.++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 972110 00001111122111 12356788999999999
Q ss_pred HHHHHHHHHHHH
Q 043745 123 AFQTILSEIYRI 134 (174)
Q Consensus 123 v~~~l~~~i~~~ 134 (174)
+|+.....|.+.
T Consensus 360 VFnDcrdiIqr~ 371 (379)
T KOG0099|consen 360 VFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999887766554
No 292
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=9.9e-07 Score=68.04 Aligned_cols=113 Identities=21% Similarity=0.186 Sum_probs=74.6
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--CCHHH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--VATED 97 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~ 97 (174)
++.|+|.|||+-.-...-.-..=.|+.++|+.+..+=.=-+..+.+-.+.-. + -..+|++.||+||-.... -..++
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-g-ik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-G-IKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-c-cceEEEEecccceecHHHHHHHHHH
Confidence 5789999999975544333333469999999987631111112222222222 2 356899999999965321 23456
Q ss_pred HHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 98 AQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 98 ~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+++|.+.. +.+++++||..+.|++-+++.+.+.|...
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 67776654 46899999999999999999887776543
No 293
>PRK01889 GTPase RsgA; Reviewed
Probab=98.43 E-value=1.3e-06 Score=69.45 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=59.9
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCC
Q 043745 40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAI 118 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 118 (174)
..++|.+++|+++...-....+..++..+... +++.+||.||+||.+.. .+..+.+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997555555667776665543 57778899999997531 112222222 346899999999999
Q ss_pred CHHHHHHHHH
Q 043745 119 NVEKAFQTIL 128 (174)
Q Consensus 119 ~i~~v~~~l~ 128 (174)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888764
No 294
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.41 E-value=2.8e-06 Score=65.33 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=59.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhh--------------------------hhhHHhhc--cCCEEEEEEeCCChhhHHHH-
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYR--------------------------AITSAYYR--GALGALLVYDVTKPTTFENV- 61 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~--------------------------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~- 61 (174)
.+..+|..+.+.||||||..++. ..+...+. ++|+++|+++.+.. .+...
T Consensus 55 ~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D 133 (276)
T cd01850 55 EIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD 133 (276)
T ss_pred EEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH
Confidence 34457777899999999943221 01112333 46788888887642 11111
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCCCCcc--CCCHHHHHHHHHHhCCcEEEEec
Q 043745 62 SRWLKELRDHADSNIVIMMIGNKTDLKHLR--AVATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 62 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
...+..+. . .+|+++|+||+|+.... ....+..++.+...+++++....
T Consensus 134 ~~~lk~l~---~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 134 IEFMKRLS---K-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHh---c-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 22333332 2 58999999999985422 23345566777788888887654
No 295
>PRK00007 elongation factor G; Reviewed
Probab=98.40 E-value=3.1e-06 Score=72.86 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=63.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
....++|+||||+.+|.......+..+|++++|+|+...-..+....| ..+... ++|+|+++||+|+.+.. ...
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~---~~p~iv~vNK~D~~~~~--~~~ 146 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY---KVPRIAFVNKMDRTGAD--FYR 146 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc---CCCEEEEEECCCCCCCC--HHH
Confidence 346789999999998877777788999999999998865433332222 333332 57899999999997532 233
Q ss_pred HHHHHHHHhCC----cEEEEeccCC
Q 043745 97 DAQSYAEREGL----SFIETSALEA 117 (174)
Q Consensus 97 ~~~~~~~~~~~----~~~~~Sa~~~ 117 (174)
..+++.+.++. ..+++|+..+
T Consensus 147 ~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 147 VVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHHhCCCeeeEEecCccCCc
Confidence 34444455543 2445555544
No 296
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=2.5e-06 Score=66.57 Aligned_cols=102 Identities=28% Similarity=0.246 Sum_probs=68.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA-- 94 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-- 94 (174)
.+-.+.+-|||||+.|....-.-..-||+.|+++|+-.. -++..++. ..|....+ =..+++..||+||.+-.+--
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRH-s~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRH-SFIASLLG-IRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHH-HHHHHHhC-CcEEEEEEeeecccccCHHHHH
Confidence 344689999999999988776666789999999998432 12222221 11222222 25688889999997633211
Q ss_pred --HHHHHHHHHHhCC---cEEEEeccCCCCHH
Q 043745 95 --TEDAQSYAEREGL---SFIETSALEAINVE 121 (174)
Q Consensus 95 --~~~~~~~~~~~~~---~~~~~Sa~~~~~i~ 121 (174)
..+-..|+.++++ .++++||..|.|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2345677888875 58999999998854
No 297
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.37 E-value=4.6e-06 Score=55.54 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=40.9
Q ss_pred EECCeEEEEEEEeCCCchh----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 13 QVEGRTIKAQIWDTAGQER----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.+++.. +.|+||||... +...... +..+|++++|+|+++... +....++..+. ...|+++|.
T Consensus 43 ~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~ 114 (116)
T PF01926_consen 43 EYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVL 114 (116)
T ss_dssp EETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEE
T ss_pred eeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEE
Confidence 345544 47999999642 1123333 478999999999877321 22333444442 368999999
Q ss_pred eC
Q 043745 83 NK 84 (174)
Q Consensus 83 nK 84 (174)
||
T Consensus 115 NK 116 (116)
T PF01926_consen 115 NK 116 (116)
T ss_dssp ES
T ss_pred cC
Confidence 98
No 298
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.37 E-value=2.9e-06 Score=65.63 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 26 TAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 26 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
.|||-. -.......++.+|++++|+|+.++.+... .++..+. . +.|+++|.||+|+.+... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 466542 23455667889999999999977644322 1222221 1 579999999999954211 1222222334
Q ss_pred hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 105 EGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 105 ~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+.+++.+||+++.|++++++.+...+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999999888776554
No 299
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.36 E-value=8.5e-06 Score=59.40 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred EEEEEEeCCCchhhh-------h-h---hHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEeC
Q 043745 19 IKAQIWDTAGQERYR-------A-I---TSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHAD--SNIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~-------~-~---~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piilv~nK 84 (174)
..+.|+||||..+.. . + ......+.|+++||+++.+. +....+ +..+....+ .-.+++++.|+
T Consensus 49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~---l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQA---VETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHH---HHHHHHHhChHhHhcEEEEEEC
Confidence 468999999965331 1 1 12224578999999998872 122222 333333222 12578888999
Q ss_pred CCCCCccCCC------HHHHHHHHHHhCCcEEEEecc-----CCCCHHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVA------TEDAQSYAEREGLSFIETSAL-----EAINVEKAFQTILSEIY 132 (174)
Q Consensus 85 ~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~-----~~~~i~~v~~~l~~~i~ 132 (174)
.|......+. ...++.+.+.-+-.++..+.. .+.++.++++.+.+.+.
T Consensus 126 ~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 126 GDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred ccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 9864422111 134455555555555444433 34455555555544443
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.35 E-value=5.8e-06 Score=60.88 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=61.8
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..+.|.|+.|.-.... .+.-..+..+.|+|+.+.+... ...... ...|.++++||+|+.+.......+.
T Consensus 103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~-----~~~~~~---~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP-----LKYPGM---FKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh-----hhhHhH---HhhCCEEEEEHHHccccchhhHHHH
Confidence 3567788877211111 1112345666788887643211 111111 1357899999999975322223445
Q ss_pred HHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 99 QSYAEREG--LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 99 ~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
.+..++.+ .+++++||+++.|++++|+++.+.
T Consensus 172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455544 789999999999999999999875
No 301
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=9.4e-07 Score=65.38 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=95.5
Q ss_pred CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhh
Q 043745 2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT----------TFENVSRWLKELRDH 71 (174)
Q Consensus 2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~ 71 (174)
..||+|.. ++.++-..+.+.+.|++|+...+..|-.++++.-.++|++..+..+ ..++-+..+..|..+
T Consensus 183 RvPTTGi~-eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 183 RVPTTGII-EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred ecCcccce-ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence 46888866 4677777888999999999999999999999999999987766432 122222233344333
Q ss_pred cC-CCCeEEEEEeCCCCCCc----------------cCCCHHHHHHHHHHh----C------CcEEEEeccCCCCHHHHH
Q 043745 72 AD-SNIVIMMIGNKTDLKHL----------------RAVATEDAQSYAERE----G------LSFIETSALEAINVEKAF 124 (174)
Q Consensus 72 ~~-~~~piilv~nK~Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~v~ 124 (174)
.= .+.++|++.||.|+.++ ...+.+.+++|.-++ + +--++++|.+.+||.-+|
T Consensus 262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF 341 (359)
T KOG0085|consen 262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF 341 (359)
T ss_pred ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence 22 57899999999998432 122334455554433 1 234578899999999999
Q ss_pred HHHHHHHHHHHhh
Q 043745 125 QTILSEIYRIISK 137 (174)
Q Consensus 125 ~~l~~~i~~~~~~ 137 (174)
.++...++++..+
T Consensus 342 aaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 342 AAVKDTILQLNLK 354 (359)
T ss_pred HHHHHHHHHhhhH
Confidence 9999999887544
No 302
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.29 E-value=8.9e-06 Score=64.00 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=69.2
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~ 95 (174)
++.+.|.||+|...-... ....+|.++++.+....+.+..++. .+. +..-++|+||+|+.+.... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence 467899999997633222 3567999999977555544444321 121 2234788999998653211 11
Q ss_pred HHHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 96 EDAQSYAER-------EGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 96 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
.+.+..... +..+++.+||+++.|++++++.+.+........
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~s 265 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTAS 265 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence 222222221 124799999999999999999999877654433
No 303
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.29 E-value=3.6e-06 Score=56.19 Aligned_cols=80 Identities=25% Similarity=0.246 Sum_probs=59.1
Q ss_pred hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 32 YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 32 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
+......+++.++.++++|+.++.+++..+ |...+....+.+.|+++++||.|+.+...+..++...+ ++
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~--------~~ 105 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEF--------AE 105 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHH--------HH
Confidence 444556678899999999999999998766 87777665555789999999999854334444444433 45
Q ss_pred EeccCCCCHH
Q 043745 112 TSALEAINVE 121 (174)
Q Consensus 112 ~Sa~~~~~i~ 121 (174)
+|++++.|+.
T Consensus 106 ~s~~~~~~~~ 115 (124)
T smart00010 106 TSAKTPEEGE 115 (124)
T ss_pred HhCCCcchhh
Confidence 7888888874
No 304
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.28 E-value=9.6e-06 Score=66.59 Aligned_cols=126 Identities=19% Similarity=0.355 Sum_probs=97.2
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD 86 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D 86 (174)
+.+++.++++...+.+.|.+|.. -.+|-..+|++||||.+.+.++|+.++.+...+..+.. ..+|+++++++.-
T Consensus 66 ~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 66 FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred ceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 77788899999999999998844 34566789999999999999999998776665543332 4688888888765
Q ss_pred CCC--ccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 87 LKH--LRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 87 l~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
... .+.+...+...++.++. +.+|+++|.+|.+++.+|+.+..++.......
T Consensus 141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~q 195 (749)
T KOG0705|consen 141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQ 195 (749)
T ss_pred hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 432 34455566666665554 78999999999999999999999888875443
No 305
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=8.1e-06 Score=62.82 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred hhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcE
Q 043745 31 RYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSF 109 (174)
Q Consensus 31 ~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 109 (174)
+...+.+..+.+.|-.++++++.+++ +...+.+++-..... ++..+|+.||+||.+......++.......+|+++
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v 144 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV 144 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence 33445556666788888999888875 566667766555443 56677779999998644332245666777889999
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q 043745 110 IETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 110 ~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+.+|++++.+++++...+...
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEecCcCcccHHHHHHHhcCC
Confidence 999999999999988877554
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.25 E-value=2e-06 Score=64.71 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=56.9
Q ss_pred EEEEEeCCCchhhhhhhHHhh--------ccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 20 KAQIWDTAGQERYRAITSAYY--------RGALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.++|||||.++...|...- ...-++++++|..-..+-. .+..++..+......+.|.|.|.||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999988765554443 4456899999987443211 2223333322211137999999999999752
Q ss_pred c---CC----C------------HHHHHHHHH---HhC-C-cEEEEeccCCCCHHHHHHHHHHH
Q 043745 91 R---AV----A------------TEDAQSYAE---REG-L-SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 91 ~---~~----~------------~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
. .. + ....+++++ ..+ . .++.+|+.+++++++++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 00 0 000111111 123 3 69999999999999998866543
No 307
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.4e-05 Score=62.72 Aligned_cols=110 Identities=15% Similarity=0.013 Sum_probs=77.5
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..+.|+|++|++++-+..-.-+...|..+||++.++.-..+... .+..+... + -...++|+||.|+.+... .++..
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdll-g-i~~giivltk~D~~d~~r-~e~~i 125 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLL-G-IKNGIIVLTKADRVDEAR-IEQKI 125 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhc-C-CCceEEEEeccccccHHH-HHHHH
Confidence 37899999999999887777778899999999997543322221 22222222 2 245688999999976432 23334
Q ss_pred HHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 99 QSYAERE---GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 99 ~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+++...+ ..+++.+|+++++|++++-+.|....-
T Consensus 126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 4444333 367899999999999999999988874
No 308
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.2e-05 Score=64.49 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=67.8
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
.+..+.+++....++|.|||||++|..-.=..+..+|..+.|+|+...-.-+. .++++ +-+. .++||+-++||.|.
T Consensus 70 tsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfe-Vcrl--R~iPI~TFiNKlDR 145 (528)
T COG4108 70 TSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFE-VCRL--RDIPIFTFINKLDR 145 (528)
T ss_pred EeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHH-HHhh--cCCceEEEeecccc
Confidence 34466788888999999999999987766666778999999999986422222 12222 2222 37999999999998
Q ss_pred CCccCCCHHHHHHHHHHhCCcEE
Q 043745 88 KHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
.... ..+.+.++.+.+++...
T Consensus 146 ~~rd--P~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 146 EGRD--PLELLDEIEEELGIQCA 166 (528)
T ss_pred ccCC--hHHHHHHHHHHhCccee
Confidence 7633 34556666666665433
No 309
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.13 E-value=1.2e-05 Score=69.76 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+++....++|+||||+.+|.......+..+|++++|+|+...-.......| ...... +.|+|+++||+|+.
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence 355678899999999999988888889999999999999875332222233 222222 46788999999975
No 310
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.9e-05 Score=65.17 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=75.7
Q ss_pred ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCeEEEE
Q 043745 8 KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 8 ~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piilv 81 (174)
..+...++.....+.|.|.|||.+|....-.-...||+.++|+|++-.+ .|+ .+++....++... -..+|++
T Consensus 244 ~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qliva 321 (603)
T KOG0458|consen 244 DVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVA 321 (603)
T ss_pred EeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEE
Confidence 3445567788888999999999999887766677899999999997532 122 2334333333332 2458888
Q ss_pred EeCCCCCCccC----CCHHHHHHHH-HHhC-----CcEEEEeccCCCCHHHH
Q 043745 82 GNKTDLKHLRA----VATEDAQSYA-EREG-----LSFIETSALEAINVEKA 123 (174)
Q Consensus 82 ~nK~Dl~~~~~----~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~v 123 (174)
+||+|+-+=.+ .....+..|. +..| +.|+++|+.+|+|+-..
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999854111 1122334444 3333 57999999999986544
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=2.2e-05 Score=58.19 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=52.7
Q ss_pred EEEEEEeCCCchhhh-----hhhHHhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYR-----AITSAYYRGALGALLVYDVTKPTTFENV---SRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+++||.+|++.+- ......+++.+++|+|||++..+-..++ ..-++.+.++.+ +..+.+..+|+||..
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQ 130 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcc
Confidence 568999999999553 2456778999999999999987544444 344555656554 788999999999964
No 312
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.12 E-value=9.8e-06 Score=71.22 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=52.7
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..+.++|+||||+.+|.......+..+|++|+|+|+.+.-......-| ..+.. .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence 367889999999999988888888999999999999875333322223 33332 368999999999986
No 313
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.05 E-value=2.1e-05 Score=59.60 Aligned_cols=112 Identities=10% Similarity=0.138 Sum_probs=75.1
Q ss_pred EEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-
Q 043745 19 IKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL- 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~- 90 (174)
-.+.|||+||-.+ |+.....++...|.++.+.+..|+.---+ .++++.+..... +.++++++|+.|....
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPG 164 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhccc
Confidence 4589999999654 77778888899999999999988631111 233444444332 4799999999997432
Q ss_pred ------cCCCHHHHHHHHHH----h------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 91 ------RAVATEDAQSYAER----E------GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 91 ------~~~~~~~~~~~~~~----~------~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.......++++.++ . -.+++..++..+-|++.+...++..+.
T Consensus 165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11111222222211 1 147888888999999999999888876
No 314
>PTZ00416 elongation factor 2; Provisional
Probab=98.04 E-value=1.5e-05 Score=70.06 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=52.1
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
...++|+||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 57799999999999988888889999999999999875332222 22333333 258999999999986
No 315
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.02 E-value=3.2e-05 Score=60.24 Aligned_cols=104 Identities=16% Similarity=0.063 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH--
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT-- 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-- 95 (174)
++.+.|.||+|..... ...+..+|.++++-.... -+++......+ .+.|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678999999854222 224667888888854433 33333333323 2467799999999975321110
Q ss_pred HH----HHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 96 ED----AQSYAER---EGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 96 ~~----~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.. ...+... +..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0111111 1236899999999999999999988744
No 316
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.02 E-value=4.6e-05 Score=63.03 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=78.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
|..-.+.+-|.+-. ...-+...- ..+|++.++||.+++.+|..+...++.-... ...|+++|++|.|+.+..+...
T Consensus 471 g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~ 546 (625)
T KOG1707|consen 471 GQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYS 546 (625)
T ss_pred cccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccC
Confidence 44455666665543 222222222 6799999999999999999886665543333 4799999999999987654434
Q ss_pred HHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 96 EDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
-...+++.+++++ .+.+|.++.-. .++|.+|+..+.-..
T Consensus 547 iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 547 IQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCC
Confidence 3448999999975 45566665333 788888887765544
No 317
>PTZ00258 GTP-binding protein; Provisional
Probab=97.95 E-value=7.9e-05 Score=59.86 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCeEEEEEeCC--CCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCC
Q 043745 75 NIVIMMIGNKT--DLKHLRAVATEDAQSYAERE-GLSFIETSALEAI 118 (174)
Q Consensus 75 ~~piilv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 118 (174)
.+|+++|+|+. |+.....-..+++++++... +.+++.+||+-..
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 48999999999 86221122345666777677 4889999986443
No 318
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.93 E-value=0.00016 Score=53.93 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=56.1
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccC-CC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRA-VA 94 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~-~~ 94 (174)
...++.|+||+|.. ..+. ...+.+|++++++|.+....... ..++..+... +.| +++|+||+|+.+... ..
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHH
Confidence 44567899999854 3333 34588999999999976433222 2233333332 456 455999999863221 10
Q ss_pred --HHHHHH-HHHHh--CCcEEEEeccCCC
Q 043745 95 --TEDAQS-YAERE--GLSFIETSALEAI 118 (174)
Q Consensus 95 --~~~~~~-~~~~~--~~~~~~~Sa~~~~ 118 (174)
..+++. +.... +.+++.+||+++.
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 112222 22222 3689999999874
No 319
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=9.5e-05 Score=63.45 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=53.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.++++|+|||||-+|.......++-+|++++|+|+...-..+.-.-|. +... .++|.++++||+|...
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK---YGVPRILFVNKMDRLG 142 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH-HHhh---cCCCeEEEEECccccc
Confidence 588999999999999999999999999999999998753333323342 2222 4799999999999754
No 320
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.83 E-value=0.00014 Score=56.52 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=41.5
Q ss_pred EEEEEEEeCCCchhhhhh-------hHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQERYRAI-------TSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D 86 (174)
+..+.+|||||..+.... ...++ .+.|+++||..++.......-...+..+....+ --.++|++.|+.|
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 357899999997754221 12222 268999999765532111111223333433322 1256899999999
Q ss_pred CCCc
Q 043745 87 LKHL 90 (174)
Q Consensus 87 l~~~ 90 (174)
....
T Consensus 165 ~~~p 168 (313)
T TIGR00991 165 FSPP 168 (313)
T ss_pred cCCC
Confidence 7643
No 321
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00058 Score=53.65 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=66.5
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhhcCCCCeEEEEEeCCCCCCc--c
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW-LKELRDHADSNIVIMMIGNKTDLKHL--R 91 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piilv~nK~Dl~~~--~ 91 (174)
.+..+++.|+|+|||...-..+-.-.+-.|..++|+|+...-.-+...-+ +.++. -...++|+||+|+..+ +
T Consensus 66 q~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 66 QGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQR 140 (522)
T ss_pred ccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhh
Confidence 34557889999999987655544444567899999999864322222211 11221 2346778899987543 2
Q ss_pred CCCHHH-HHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 92 AVATED-AQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 92 ~~~~~~-~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.--.++ .+...+.+ +.+++++||+.|.--++.+..+.+.+..+
T Consensus 141 ~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 141 ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 211222 22222222 26899999999954444444444444443
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00017 Score=55.42 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=62.7
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCCCCccC---CCH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI-VIMMIGNKTDLKHLRA---VAT 95 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---~~~ 95 (174)
.+-.+|+|||.+|-+..-.-..+.|+.|+|++++|.+--+..... ...++. .+ .++++.||.|+-++.+ +-+
T Consensus 76 hyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-Llarqv---Gvp~ivvflnK~Dmvdd~ellelVe 151 (394)
T COG0050 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQV---GVPYIVVFLNKVDMVDDEELLELVE 151 (394)
T ss_pred eEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-hhhhhc---CCcEEEEEEecccccCcHHHHHHHH
Confidence 467899999999988766666789999999999985322221111 111222 45 4777889999976432 234
Q ss_pred HHHHHHHHHhCC-----cEEEEeccC
Q 043745 96 EDAQSYAEREGL-----SFIETSALE 116 (174)
Q Consensus 96 ~~~~~~~~~~~~-----~~~~~Sa~~ 116 (174)
.+.+++...++. |++.-||..
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhhh
Confidence 567788888864 677777653
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=6.8e-05 Score=63.07 Aligned_cols=69 Identities=26% Similarity=0.386 Sum_probs=55.0
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
.++..-+++.|||||-.|-......++-+|++++++|+.+.-.++.- .. |++....+.|+.+|+||.|+
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~---ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RI---IKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HH---HHHHHhccCcEEEEEehhHH
Confidence 67777899999999999998888889999999999999876555432 22 23333347899999999995
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.75 E-value=0.00066 Score=54.03 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=65.3
Q ss_pred EEEEEeCCCchhhhh--hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CH
Q 043745 20 KAQIWDTAGQERYRA--ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--AT 95 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~--~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~ 95 (174)
.+.|+||.||+.|-. ++-.+=+..|-.++++-+++..+--. ++.+-.... .++|+|++.||+|+.++..+ ..
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence 478999999999854 34444568899999999988643221 222222222 37999999999998543111 01
Q ss_pred HHHHHH----------------------HHHhC---CcEEEEeccCCCCHHHHHH
Q 043745 96 EDAQSY----------------------AEREG---LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 96 ~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~v~~ 125 (174)
+++..+ +.+.+ +|++.+|+-+|+|++-+.+
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 111111 22222 5899999999999875444
No 325
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.70 E-value=0.00058 Score=52.09 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCchh-h-----hhhhHHhhc--cCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQER-Y-----RAITSAYYR--GALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~-~-----~~~~~~~~~--~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+...++|||||-. | ...+...+. ..-++++++|.... -.|=.=.-+.-.|.- ...+|+|++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEeccc
Confidence 45688999999853 2 223333333 23466667775432 222111111111221 13799999999999
Q ss_pred CCCcc----CCC-HHHHHHHHH-------------------H--hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 87 LKHLR----AVA-TEDAQSYAE-------------------R--EGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 87 l~~~~----~~~-~~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.+.. ... .+..++-.. + .++..+-+|+.+|.|.+++|..+-..+-..
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 96531 000 011111111 1 135688999999999999999887665443
No 326
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.68 E-value=0.00024 Score=41.05 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 43 ALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 43 ~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.++++|++|++.. .+.+.-...+..++..-. +.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 6899999999864 566666667777776654 799999999998
No 327
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.68 E-value=0.0013 Score=51.39 Aligned_cols=116 Identities=19% Similarity=0.370 Sum_probs=79.4
Q ss_pred EEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCCCh-hhHHHHHHHHHHHHhh----------------------
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVTKP-TTFENVSRWLKELRDH---------------------- 71 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~---------------------- 71 (174)
.++.+|-.-|.-....+....+.. --.+||+.|++++ .-++.+.+|..-+.++
T Consensus 100 tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~w 179 (473)
T KOG3905|consen 100 TRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDW 179 (473)
T ss_pred hhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456777776765544444444332 2478999999998 4555666665533220
Q ss_pred ---c------------------------------------CCCCeEEEEEeCCCC----CCccC-------CCHHHHHHH
Q 043745 72 ---A------------------------------------DSNIVIMMIGNKTDL----KHLRA-------VATEDAQSY 101 (174)
Q Consensus 72 ---~------------------------------------~~~~piilv~nK~Dl----~~~~~-------~~~~~~~~~ 101 (174)
. .-++|++||.+|+|+ ..+.+ .....++.|
T Consensus 180 QeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF 259 (473)
T KOG3905|consen 180 QEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF 259 (473)
T ss_pred HHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence 0 024899999999997 22211 122446888
Q ss_pred HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 102 AEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 102 ~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+-++|...+.+|++...|++-+...|.+.++..
T Consensus 260 CLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 260 CLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred HHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 889999999999999999999999999887653
No 328
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.63 E-value=0.00093 Score=55.08 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=78.6
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCCChhh-HHHHHHHHHHHHh----------------------
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVTKPTT-FENVSRWLKELRD---------------------- 70 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~i~~---------------------- 70 (174)
..++.+|-..|...+..+....+.. --.+++|.|.+.+=. ++.+..|+..++.
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~ 151 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ 151 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3578999998866666666554442 237889999998632 3334444432221
Q ss_pred ---hc----------------------------C---------CCCeEEEEEeCCCCCC----cc-------CCCHHHHH
Q 043745 71 ---HA----------------------------D---------SNIVIMMIGNKTDLKH----LR-------AVATEDAQ 99 (174)
Q Consensus 71 ---~~----------------------------~---------~~~piilv~nK~Dl~~----~~-------~~~~~~~~ 99 (174)
+. + -++|++||++|.|.-. .. +...+-++
T Consensus 152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR 231 (472)
T PF05783_consen 152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR 231 (472)
T ss_pred HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence 00 0 1389999999999621 11 12234467
Q ss_pred HHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 100 SYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 100 ~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.++-.+|...+.+|++...+++.++..|.+.++..
T Consensus 232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred HHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 78888899999999999999999998888877653
No 329
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00033 Score=58.47 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=51.4
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
..+++++|||||-+|.-.....++-.|+.+++++....-.-+...-|. +..++ ++|-+.++||+|.
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY---NVPRICFINKMDR 168 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc---CCCeEEEEehhhh
Confidence 578999999999999888888889999999999987653333333453 33443 7999999999995
No 330
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.55 E-value=0.00057 Score=51.54 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=44.5
Q ss_pred EEEEEEeCCCchh-------------hhhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 19 IKAQIWDTAGQER-------------YRAITSAYYR-GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
..+.|+|+||... ...+...|++ ..+++++|+|+...-.-....++...+.. ...|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 4689999999641 2235667788 45699999988653222222233333322 36899999999
Q ss_pred CCCCC
Q 043745 85 TDLKH 89 (174)
Q Consensus 85 ~Dl~~ 89 (174)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99875
No 331
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.53 E-value=0.00054 Score=51.97 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=41.0
Q ss_pred EEEEEEeCCCchhhhh---h-------hHHhhc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCeEEEEEe
Q 043745 19 IKAQIWDTAGQERYRA---I-------TSAYYR--GALGALLVYDVTKPT-TFENVSRWLKELRDHADS--NIVIMMIGN 83 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~---~-------~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piilv~n 83 (174)
..+.||||||..+... . ...+++ ..|+++||..++... ...+ ...+..|....+. -.++++|.|
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T 157 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT 157 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence 5689999999764411 1 223343 678888887666432 2221 2333444433221 257999999
Q ss_pred CCCCCC
Q 043745 84 KTDLKH 89 (174)
Q Consensus 84 K~Dl~~ 89 (174)
|.|...
T Consensus 158 ~~d~~~ 163 (249)
T cd01853 158 HAASSP 163 (249)
T ss_pred CCccCC
Confidence 999753
No 332
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.50 E-value=0.00026 Score=51.22 Aligned_cols=79 Identities=19% Similarity=0.108 Sum_probs=55.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCH
Q 043745 44 LGALLVYDVTKPTTFENVSRWLKELRD-HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG--LSFIETSALEAINV 120 (174)
Q Consensus 44 d~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 120 (174)
+.-|+|+|++..+..- +. ....-..=++|+||.||.+.-..+.+...+-+++.+ .+++++|+++|+|+
T Consensus 119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 3777888887654221 11 111011457888999998765566677777777764 79999999999999
Q ss_pred HHHHHHHHHHH
Q 043745 121 EKAFQTILSEI 131 (174)
Q Consensus 121 ~~v~~~l~~~i 131 (174)
++++.++....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99998887653
No 333
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.48 E-value=0.002 Score=52.19 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred CCeEEEEEEEeCCCchhh--------hh--h-------------------hHHhhc-cCCEEEEEE-eCC----ChhhHH
Q 043745 15 EGRTIKAQIWDTAGQERY--------RA--I-------------------TSAYYR-GALGALLVY-DVT----KPTTFE 59 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~--------~~--~-------------------~~~~~~-~~d~ii~v~-d~~----~~~s~~ 59 (174)
++-...+.|+||+|-+.- .. + ....+. ++|+.|+|. |.+ .++.+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 566788999999984321 11 0 233444 899999888 653 123344
Q ss_pred HH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 60 NV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 60 ~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
.. .+|+..+... ++|++++.|+.|-.... ..+...++..+++++++.+|..
T Consensus 167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 167 EAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHH
Confidence 44 4677777665 68999999999932211 3344556667778887777753
No 334
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00018 Score=55.58 Aligned_cols=108 Identities=21% Similarity=0.193 Sum_probs=67.6
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-- 93 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-- 93 (174)
.+.|+|+||||-.-...-.-..-.|+.++++.... +++-+.+ ..+... .-..++++.||+||-.+.+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM--~LkhiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM--KLKHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh--hhceEEEEechhhhhhHHHHHH
Confidence 36899999999654332222223466676665443 3444433 222111 13578999999999753321
Q ss_pred CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 94 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..++++.|.... +.+++++||.-..|++-+.+.++..+.-
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 123455555544 4689999999999999999888877643
No 335
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.39 E-value=0.0041 Score=49.67 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=29.0
Q ss_pred CCeEEEEEeCCCCCC-ccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 75 NIVIMMIGNKTDLKH-LRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 75 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
.+|+++++|+.|..- ......+++.+++...+.+++.+||+
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 389999999998521 11223456677777778889999984
No 336
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.38 E-value=0.00055 Score=48.27 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=44.5
Q ss_pred EEEEEeCCCchh----hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 20 KAQIWDTAGQER----YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 20 ~l~l~D~~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.+.|+||||... ...++..++..+|++|+|.++...-+-.....|....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 479999999753 2356888899999999999999865544545555444333 33488888984
No 337
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.002 Score=50.60 Aligned_cols=92 Identities=22% Similarity=0.117 Sum_probs=62.1
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc---CCCHHH
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR---AVATED 97 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~---~~~~~~ 97 (174)
+-=.|+|||.+|-+..-.-..+.|+.|+|+.++|.+=- ..++.+...++..- ..+++++||.|+.++. ++-+-+
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE 195 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEME 195 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHH
Confidence 34579999999988766666788999999999985422 22222222233321 3588889999997432 334456
Q ss_pred HHHHHHHhC-----CcEEEEecc
Q 043745 98 AQSYAEREG-----LSFIETSAL 115 (174)
Q Consensus 98 ~~~~~~~~~-----~~~~~~Sa~ 115 (174)
++++...+| .|++.-||.
T Consensus 196 ~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 196 IRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHcCCCCCCCCeeecchh
Confidence 788888886 478877654
No 338
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.37 E-value=0.0031 Score=45.06 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=60.9
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
..+.+.|+|+++... ......+..+|.+++++..+. .+...+..++..+... +.|+.+|.||.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 456789999996542 233455688999999998874 4666666666666543 4678899999997532 345
Q ss_pred HHHHHHHHhCCcEEE
Q 043745 97 DAQSYAEREGLSFIE 111 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (174)
+.+++++.++++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 339
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.28 E-value=0.00069 Score=52.31 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred CeEEEEEeCCCCCCccCCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 76 IVIMMIGNKTDLKHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..-++|+||+|+.+......+...+..+.+ ..+++.+||++++|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 556888999999652222233344444444 4789999999999999999998764
No 340
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0051 Score=46.26 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=69.0
Q ss_pred eEEEEEEEeCCCchhhhh---hhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-
Q 043745 17 RTIKAQIWDTAGQERYRA---ITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL- 90 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~- 90 (174)
.-+.+.+||.|||-.|-. -....++++.++|||.|+-+. +.+.++-..+....... +++-+=+++.|.|-..+
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvN-p~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVN-PNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecC-CCceEEEEEEeccCCchh
Confidence 346789999999976532 245678899999999998653 22333333333322222 57888899999996432
Q ss_pred ------cCCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 91 ------RAVATEDAQSYAEREG-----LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 91 ------~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.+......++ ...| +.++-+| .-.+.+-+.|.++++.+...
T Consensus 152 ~kietqrdI~qr~~d~l-~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDEL-ADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred hhhhhHHHHHHHhhHHH-HhhhhccceEEEEEee-ecchHHHHHHHHHHHHHhhh
Confidence 11111112222 2233 2355455 45678888888888776543
No 341
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.14 E-value=0.0049 Score=47.41 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=25.9
Q ss_pred CeEEEEEeCCC--CCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 76 IVIMMIGNKTD--LKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 76 ~piilv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
+|+++++|+.| +... .-.......++...+.+++.+||+
T Consensus 196 KP~i~v~N~~e~d~~~~-~~~~~~~~~~~~~~~~~~i~~sa~ 236 (274)
T cd01900 196 KPVLYVANVSEDDLANG-NNKVLKVREIAAKEGAEVIPISAK 236 (274)
T ss_pred CCceeecccCHHHhccc-cHHHHHHHHHHhcCCCeEEEeeHH
Confidence 79999999988 3221 112234455555667889999985
No 342
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00017 Score=57.90 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=59.3
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
-+.++-++.+++++||||+-+|+-....+++-.|+++.|||.+-.-.-+.+-.|.+ ....++|-+.++||+|..
T Consensus 94 av~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 94 AVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKL 167 (753)
T ss_pred eeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhh
Confidence 45678888999999999999999999999999999999999986544444445633 223468989999999974
No 343
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.03 E-value=0.0016 Score=53.48 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=55.2
Q ss_pred chhhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhC
Q 043745 29 QERYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREG 106 (174)
Q Consensus 29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 106 (174)
.+.++.+|+. ++.+|+|+.++|+-++--|. ++..++..+. ..+-.+|++||.||....+ .....++..+.+
T Consensus 162 LE~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~n 234 (562)
T KOG1424|consen 162 LEIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNN 234 (562)
T ss_pred HHHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcC
Confidence 4566777765 58899999999999875444 2344444432 2467888999999976322 123344556667
Q ss_pred CcEEEEeccC
Q 043745 107 LSFIETSALE 116 (174)
Q Consensus 107 ~~~~~~Sa~~ 116 (174)
+++++.||..
T Consensus 235 i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 IPVVFFSALA 244 (562)
T ss_pred ceEEEEeccc
Confidence 9999999876
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.99 E-value=0.0031 Score=49.67 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=63.4
Q ss_pred CCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 26 TAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 26 ~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
.+|+. ++.......+..+|+++-|+|+-++.+...- .+..... +.|.++|+||.||.+.. +..+=.+.+...
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~ 89 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKE-VTKKWKKYFKKE 89 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHH-HHHHHHHHHHhc
Confidence 36654 5677788888999999999999998765431 2222222 34558999999997632 222333444444
Q ss_pred hCCcEEEEeccCCCCHHHHHHH
Q 043745 105 EGLSFIETSALEAINVEKAFQT 126 (174)
Q Consensus 105 ~~~~~~~~Sa~~~~~i~~v~~~ 126 (174)
.+...+.+++..+.+...+...
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~ 111 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKA 111 (322)
T ss_pred CCCccEEEEeecccCccchHHH
Confidence 4677888999888887776643
No 345
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0022 Score=54.98 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=52.1
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHH-HHHHHHHhhcCCCCeEEEEEeC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVS-RWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~-~~~~~i~~~~~~~~piilv~nK 84 (174)
+.-+.+-...+.++|+|+|||-+|.+.......=+|++++++|+... ++..-+. -|.+ ...+++|+||
T Consensus 62 ss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvink 133 (887)
T KOG0467|consen 62 SSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINK 133 (887)
T ss_pred ccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEeh
Confidence 33445555678899999999999999998888889999999999764 2222221 1322 3456788899
Q ss_pred CCC
Q 043745 85 TDL 87 (174)
Q Consensus 85 ~Dl 87 (174)
+|.
T Consensus 134 idr 136 (887)
T KOG0467|consen 134 IDR 136 (887)
T ss_pred hhh
Confidence 993
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.59 E-value=0.017 Score=44.73 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
+..++-+.|++|.|--.-.-. ...-+|.+++|.-..-.+..+.++.=+-+ +-=|+|+||.|+..... .
T Consensus 140 dAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~-a 207 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEK-A 207 (323)
T ss_pred HhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHH-H
Confidence 344566788888764322221 23458999999877666666655432222 22367889999754311 1
Q ss_pred HHHH---HHHHH----HhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 95 TEDA---QSYAE----REG--LSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 95 ~~~~---~~~~~----~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
..+. ..+.. ..+ -+++.+||.+++|+.++++.+.++..-....
T Consensus 208 ~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 208 ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 1111 11111 112 3699999999999999999888876554433
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.57 E-value=0.0095 Score=42.63 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=27.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 44 LGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 44 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
|++++|+|+.++.+... ..+...+. ....+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532221 12222221 1112589999999999964
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.031 Score=44.75 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=62.2
Q ss_pred EEEEEeCCCchhhhhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC----
Q 043745 20 KAQIWDTAGQERYRAITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV---- 93 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~---- 93 (174)
.+.|.|.+|+.+|.+..-.-+. -.|...+|++++..-.+. ..+.+..+... ++|++++.+|+|+.....+
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHH
Confidence 4789999999999875433322 467888888887542221 12333444433 7999999999999543111
Q ss_pred --------------------CHHHHHHHHHHh----CCcEEEEeccCCCCHHHH
Q 043745 94 --------------------ATEDAQSYAERE----GLSFIETSALEAINVEKA 123 (174)
Q Consensus 94 --------------------~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v 123 (174)
+..++...+.+. -.|+|-+|+.+|+|++-+
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 111222222222 257899999999997654
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.35 E-value=0.029 Score=48.19 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=43.6
Q ss_pred EEEEEEeCCCchhhh-------h---hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCeEEEEEeC
Q 043745 19 IKAQIWDTAGQERYR-------A---ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADS--NIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~-------~---~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK 84 (174)
..+.|+||||..+.. . ....++. .+|++|||..++.......-..++..|....+. -..+|||.|+
T Consensus 166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh 245 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH 245 (763)
T ss_pred ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence 568999999976421 1 1223444 589999999876433222222455555554442 2468889999
Q ss_pred CCCCC
Q 043745 85 TDLKH 89 (174)
Q Consensus 85 ~Dl~~ 89 (174)
.|..+
T Consensus 246 gD~lp 250 (763)
T TIGR00993 246 AASAP 250 (763)
T ss_pred CccCC
Confidence 99764
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.033 Score=47.52 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=60.2
Q ss_pred EEEEEeCCCch---hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 20 KAQIWDTAGQE---RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 20 ~l~l~D~~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
-+.+.|.||.+ ........+..++|++|||.++.+.....+ ++++..... ....|+++.||+|....++...+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhhcccHHHHH
Confidence 36789999976 345567888899999999999988654433 333333322 23457778899998765444445
Q ss_pred HHHHHHHHhCC--------cEEEEecc
Q 043745 97 DAQSYAEREGL--------SFIETSAL 115 (174)
Q Consensus 97 ~~~~~~~~~~~--------~~~~~Sa~ 115 (174)
.+.+...+++. -++++||+
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 55444444432 47889965
No 351
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.31 E-value=0.034 Score=41.06 Aligned_cols=100 Identities=19% Similarity=0.117 Sum_probs=50.5
Q ss_pred EECCeEEEEEEEeCCCchhh-------hhhh----HHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 13 QVEGRTIKAQIWDTAGQERY-------RAIT----SAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~-------~~~~----~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.+++ ..+.++||||-.+. ...+ .....+.++++||++..... .-..+-+++..+-... --..+||
T Consensus 45 ~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~iv 121 (212)
T PF04548_consen 45 EVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIV 121 (212)
T ss_dssp EETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEE
T ss_pred eecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhH
Confidence 4566 45789999994321 1111 22345789999999998321 1122222333221110 1245888
Q ss_pred EEeCCCCCCccCCC-------HHHHHHHHHHhCCcEEEEecc
Q 043745 81 IGNKTDLKHLRAVA-------TEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 81 v~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
|.|..|......+. ...++++....+-.|+..+.+
T Consensus 122 vfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 122 VFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp EEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 88888865433311 122445566666667666554
No 352
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.25 E-value=0.0086 Score=45.48 Aligned_cols=102 Identities=20% Similarity=0.154 Sum_probs=59.3
Q ss_pred EEEEEEeCCC--chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 19 IKAQIWDTAG--QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 19 ~~l~l~D~~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
+.+.|++|.| |.+.. ...-+|.+++|....-.+..+.++.=+-+ +.=++|+||.|++..+. ...
T Consensus 122 ~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~-~~~ 187 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR-TVR 187 (266)
T ss_dssp -SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH-HHH
T ss_pred CCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH-HHH
Confidence 4466777755 44322 23468999999988776666554322112 22367889999754321 122
Q ss_pred HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 97 DAQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 97 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.+...... .-+++.+||.++.|++++++.+.++.-..
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 222222211 13799999999999999999887765443
No 353
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.0079 Score=47.89 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=47.2
Q ss_pred EEEEEeCCCch-----------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQE-----------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.++||||.- +|.....=|..++|.||++||....+--++.++.+..++.+ +-.+-||.||.|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence 47899999942 33445666788999999999987654444444555555544 34577788999975
Q ss_pred C
Q 043745 89 H 89 (174)
Q Consensus 89 ~ 89 (174)
+
T Consensus 225 d 225 (532)
T KOG1954|consen 225 D 225 (532)
T ss_pred C
Confidence 4
No 354
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.24 E-value=0.083 Score=37.70 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=62.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 121 (174)
..|.|+|++|.....|+..++.-+..+...---++-++ +++-....+...+...++.+++..+..+++.+.-.+.++..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCf-l~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCF-LATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEE-EEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 57999999999999999998877666632222234444 44555544446788999999999999999998776665555
Q ss_pred HHHHHHHHH
Q 043745 122 KAFQTILSE 130 (174)
Q Consensus 122 ~v~~~l~~~ 130 (174)
.+-+.+++.
T Consensus 143 ~lAqRLL~~ 151 (176)
T PF11111_consen 143 SLAQRLLRM 151 (176)
T ss_pred HHHHHHHHH
Confidence 444444443
No 355
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=96.09 E-value=0.01 Score=45.51 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCC----------chhhhhhhHHhhccCC---EEEEEEeCCCh-h-hHHHHHHHHHH
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAG----------QERYRAITSAYYRGAL---GALLVYDVTKP-T-TFENVSRWLKE 67 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~~~~~~~~d---~ii~v~d~~~~-~-s~~~~~~~~~~ 67 (174)
.|+.|+++.+....-.-.+.+.|.+| ..++..+...|+.+-+ -+++++|++-+ + .......|+.+
T Consensus 167 k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge 246 (320)
T KOG2486|consen 167 KSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE 246 (320)
T ss_pred CCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh
Confidence 45666777666655556789999999 2344555566654433 44555566543 2 22223445443
Q ss_pred HHhhcCCCCeEEEEEeCCCCCCcc----CCCHHHHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHH
Q 043745 68 LRDHADSNIVIMMIGNKTDLKHLR----AVATEDAQSYAERE-------GLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 68 i~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
.++|+.+|.||+|..... .-....++.....+ ..+++.+|+.++.|++.++--+.+
T Consensus 247 ------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 ------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ------cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 379999999999963210 01112222212221 246788999999999988765543
No 356
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.02 E-value=0.015 Score=46.51 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=46.3
Q ss_pred chhhhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 29 QERYRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
...|.+.....++.+|+||-|.|+-|+.+-.. +.+|+.. .. .+...|+|.||+||-. .+.+++|+..
T Consensus 133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~~-gnKkLILVLNK~DLVP-----rEv~e~Wl~Y 201 (435)
T KOG2484|consen 133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---AH-GNKKLILVLNKIDLVP-----REVVEKWLVY 201 (435)
T ss_pred HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---cc-CCceEEEEeehhccCC-----HHHHHHHHHH
Confidence 34566677777889999999999999876543 3444332 22 2578999999999965 3444545443
No 357
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.048 Score=41.31 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=63.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc------------------c-----------
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL------------------R----------- 91 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~------------------~----------- 91 (174)
....+++.+||.+....+..+..|+.......- --++.++||.|.... +
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi 154 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI 154 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence 456799999999999999999999886432211 235667899985110 0
Q ss_pred ---------------CCCHHHHHHHHHHhCCcEEEEeccCC------------CCHHHHHHHHHHHHHHHHhhc
Q 043745 92 ---------------AVATEDAQSYAEREGLSFIETSALEA------------INVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 92 ---------------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~v~~~l~~~i~~~~~~~ 138 (174)
-.......+|+.++|+++++.+|... +|++.+|.++-..+-.-+..+
T Consensus 155 setegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk 228 (418)
T KOG4273|consen 155 SETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILK 228 (418)
T ss_pred cccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceec
Confidence 01123357888899999999998432 567777777766554444333
No 358
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.016 Score=47.97 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=49.8
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
++.++.++++|.|||-+|.+.....++-.|+.+.|+|+.+.--.+. ...+.+ ...+.+..+++.||.|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQ---A~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQ---AIAERIKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHH---HHHhhccceEEeehhhH
Confidence 5667899999999999999999999999999999999987422211 111111 11223445677899995
No 359
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.55 E-value=0.11 Score=35.59 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=44.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+.+.++|+++.. .......+..+|.++++.+.+ ..++..+...+..+.+... ..++.+|.|+.+..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR-VLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCH
Confidence 457899998743 333456788999999999875 3455555454555544332 45677899999754
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.55 E-value=0.21 Score=38.43 Aligned_cols=97 Identities=19% Similarity=0.080 Sum_probs=59.0
Q ss_pred EEEEEEEeCCCchhhhhhhH----H---hh-----ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 18 TIKAQIWDTAGQERYRAITS----A---YY-----RGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.+.+.|+||+|........- . .. ...|.+++|.|++.. +.+..+ ..+.+..+ +.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence 35689999999765432211 1 11 138999999999753 233322 22222211 34567899
Q ss_pred CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
.|-... .-....+....++|+.+++ +|++++++...-
T Consensus 227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~ 263 (272)
T TIGR00064 227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPFD 263 (272)
T ss_pred cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccCC
Confidence 997542 2345555667789998887 788887764433
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.21 Score=37.52 Aligned_cols=78 Identities=24% Similarity=0.245 Sum_probs=50.3
Q ss_pred EEEEEEeC-CCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 19 IKAQIWDT-AGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 19 ~~l~l~D~-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
..+.+.|| +|.+.|. +...+++|.+|.|+|.+- +++...++..+...... =.++.+|+||.|-. ...
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~------e~~ 201 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE------EEL 201 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch------hHH
Confidence 34678887 7777664 344678999999999863 45554444433322321 26899999999853 344
Q ss_pred HHHHHHHhCCc
Q 043745 98 AQSYAEREGLS 108 (174)
Q Consensus 98 ~~~~~~~~~~~ 108 (174)
..+++...+++
T Consensus 202 ~~~~~~~~~~~ 212 (255)
T COG3640 202 LRELAEELGLE 212 (255)
T ss_pred HHhhhhccCCe
Confidence 55666666653
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=95.19 E-value=0.28 Score=38.97 Aligned_cols=100 Identities=17% Similarity=0.054 Sum_probs=59.3
Q ss_pred EEEEEEeCCCchhhhh----hhHHhh--ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 19 IKAQIWDTAGQERYRA----ITSAYY--RGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
+.+.|+||+|...... ...... -..|.++||.|+...+. .+.+ ..+.... + .--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~--~-~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV--G-IDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC--C-CCEEEEeeecCCCC-
Confidence 4589999999764321 112221 25789999999976432 2222 2222211 1 23467799998542
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 92 AVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.-.+..++...+.|+.+++ +|++++++...-.+.+
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~ 329 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF 329 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence 2234455566789998887 7899888754433333
No 363
>PHA02518 ParA-like protein; Provisional
Probab=95.16 E-value=0.23 Score=36.10 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIV-IMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl 87 (174)
.+.+.|+|++|.. .......+..+|.+|++...+.. ....++.+++..+..... ..+ ..++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccCC
Confidence 4568999999874 34466677899999999987632 334444445554433322 344 4456677653
No 364
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.05 Score=43.87 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=66.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFENV---SRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
-++.+.|.+|+-.|-...-.-..+||.-++|.++...+ .|++- .+-. .+..... -..+|+++||+|-+....
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha-~Lakt~g-v~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKTAG-VKHLIVLINKMDDPTVNW 234 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH-HHHHhhc-cceEEEEEEeccCCccCc
Confidence 46899999999998765555556889999998874321 23321 1111 1111111 356888899999764211
Q ss_pred ------CCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHH
Q 043745 93 ------VATEDAQSYAEREG------LSFIETSALEAINVEKAF 124 (174)
Q Consensus 93 ------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~ 124 (174)
-..++...|.+.+| ..++++|..+|.++++..
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 11244556666555 368999999999988754
No 365
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.93 E-value=0.14 Score=41.34 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=58.0
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043745 40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAIN 119 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 119 (174)
+..+|++|-|.|+.|+..... ...-..++.. .+...+|+|.||+||... .+...=+..+..++-.--|..|.....|
T Consensus 211 iDSSDVvvqVlDARDPmGTrc-~~ve~ylkke-~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNSFG 287 (572)
T ss_pred hcccceeEEeeeccCCccccc-HHHHHHHhhc-CCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCccc
Confidence 457899999999998754321 1111223322 347889999999999652 1222223333344433346677777777
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Q 043745 120 VEKAFQTILSEIYRIISKKSLSSG 143 (174)
Q Consensus 120 i~~v~~~l~~~i~~~~~~~~~~~~ 143 (174)
-..+++-+.+...-+..+++.+.+
T Consensus 288 KgalI~llRQf~kLh~dkkqISVG 311 (572)
T KOG2423|consen 288 KGALIQLLRQFAKLHSDKKQISVG 311 (572)
T ss_pred hhHHHHHHHHHHhhccCccceeee
Confidence 777666444443333345555554
No 366
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.88 E-value=0.25 Score=39.81 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=49.0
Q ss_pred EEEEEeCCCchhhhhhhHH-----hhccCCEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCC------
Q 043745 20 KAQIWDTAGQERYRAITSA-----YYRGALGALLVYDVTKPTTFENVSRWLK-ELRDHADSNIVIMMIGNKTDL------ 87 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl------ 87 (174)
.+.|||.||...-...... -+...|.+|++.+- .|....-|+. .+.+. +.|+++|-+|.|.
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence 3899999996432222222 34577988887663 3444433333 34333 6899999999995
Q ss_pred -CCccCCCHHH----HHHHHHH----hCC---cEEEEeccCCC--CHHHHHHHHHHHHH
Q 043745 88 -KHLRAVATED----AQSYAER----EGL---SFIETSALEAI--NVEKAFQTILSEIY 132 (174)
Q Consensus 88 -~~~~~~~~~~----~~~~~~~----~~~---~~~~~Sa~~~~--~i~~v~~~l~~~i~ 132 (174)
..++....++ +++.+.+ .|+ ++|-+|..+-. +...+.+.|.+.+.
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1122333322 2333222 243 58888887554 35555555554443
No 367
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.84 E-value=0.75 Score=32.80 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred hccCCEEEEEEeCCCh-------hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEE
Q 043745 40 YRGALGALLVYDVTKP-------TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET 112 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (174)
++...+=.+++|.+|. +-...+..|+..++.... ...++||-|-.-..+ .....+++.+.+.+|++++.-
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 5566677778888762 224567889998877643 235888988764432 345788999999999999988
Q ss_pred eccCCCCHHHHHHHH
Q 043745 113 SALEAINVEKAFQTI 127 (174)
Q Consensus 113 Sa~~~~~i~~v~~~l 127 (174)
.++..-+..+++..+
T Consensus 113 ~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 113 RAKKPGCFREILKYF 127 (168)
T ss_pred CCCCCccHHHHHHHH
Confidence 888887766665544
No 368
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.38 Score=38.48 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+.++|.| ..+......++..+|-+++|++.+ -.+++..++.+..+........++.+++|+.+.+.
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 4568899998 445667788899999999999864 56788889999999888877788889999998764
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=94.61 E-value=0.18 Score=40.59 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=56.0
Q ss_pred EEEEEeCCCchhhhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 20 KAQIWDTAGQERYRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
.+.|+|.+|+++|-+..-.-+ .-.|...+++-+.-. -.--.++.+..... -.+|+++|.+|+|+..... ..+.
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPANi-LqEt 294 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPANI-LQET 294 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcHHH-HHHH
Confidence 478999999999976432211 234556666544321 01111222222222 2699999999999965432 2223
Q ss_pred HHHHH---H--------------------------HhCCcEEEEeccCCCCHHHH
Q 043745 98 AQSYA---E--------------------------REGLSFIETSALEAINVEKA 123 (174)
Q Consensus 98 ~~~~~---~--------------------------~~~~~~~~~Sa~~~~~i~~v 123 (174)
.+.+. + +.-+++|.+|..+|.|+.-+
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 32221 1 11257899999999997653
No 370
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=94.59 E-value=0.92 Score=34.69 Aligned_cols=50 Identities=24% Similarity=0.338 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 76 IVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
++++.|.||+|. ++.++...++++.+..++ |....-|++.+++.+-+.+.
T Consensus 239 ~~ClYvYnKID~-----vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----VSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----ecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHhc
Confidence 677777888874 667888888887765555 55667788888877766543
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.58 E-value=0.46 Score=37.44 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=57.5
Q ss_pred EEEEEEEeCCCchhhhhh----hHHhh--------ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 18 TIKAQIWDTAGQERYRAI----TSAYY--------RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~----~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.+.+.|+||+|....... ...+. ...+..++|.|++..+ +.+... ..+.... -+.-+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECC
Confidence 356899999997543211 11111 2467889999998542 222221 2222111 2345778999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQT 126 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~ 126 (174)
|... + .-.+...+...++|+.+++ +|++++++-..
T Consensus 270 D~t~-~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 270 DGTA-K---GGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCC-C---ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 9543 1 2345556677799999888 78888776443
No 372
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.38 E-value=0.076 Score=41.76 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=66.8
Q ss_pred EEEEEEeCCCch---------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC----CeEEEEEeCC
Q 043745 19 IKAQIWDTAGQE---------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSN----IVIMMIGNKT 85 (174)
Q Consensus 19 ~~l~l~D~~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~piilv~nK~ 85 (174)
..+.+.||-|-- .|...... +..+|.++.|.|+++++.-......+.-+....-.+ ..++=|-||+
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 347889998832 23333333 468999999999999865544444444443332222 2355677888
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
|..+...- .+ .. ..+.+||++|+|++++.+.+-..+..-..
T Consensus 305 D~e~~~~e--~E------~n--~~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 305 DYEEDEVE--EE------KN--LDVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred ccccccCc--cc------cC--CccccccccCccHHHHHHHHHHHhhhhhe
Confidence 87653211 11 11 15678999999999999887777666543
No 373
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=94.16 E-value=0.18 Score=38.63 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=50.0
Q ss_pred ccCCEEEEEEeCCCh-----h--hHHHH----HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH--HHHHHHHHhCC
Q 043745 41 RGALGALLVYDVTKP-----T--TFENV----SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE--DAQSYAEREGL 107 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~-----~--s~~~~----~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~ 107 (174)
+..+|+|+++|+.+- + .+... ..-+.++....+..+|+.+|+||+|+-..-..-.. ...+...-+|+
T Consensus 24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~ 103 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGF 103 (266)
T ss_pred CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCccc
Confidence 356999999998742 1 12222 22233344444468999999999998642100000 01111233444
Q ss_pred cEEEEeccCCCC---HHHHHHHHHHHHHHHHhh
Q 043745 108 SFIETSALEAIN---VEKAFQTILSEIYRIISK 137 (174)
Q Consensus 108 ~~~~~Sa~~~~~---i~~v~~~l~~~i~~~~~~ 137 (174)
.+-......... +++.|+.+...+......
T Consensus 104 t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 136 (266)
T PF14331_consen 104 TFPYDEDADGDAWAWFDEEFDELVARLNARVLE 136 (266)
T ss_pred ccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 322222233333 666666666666655443
No 374
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.94 E-value=0.41 Score=44.26 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=45.4
Q ss_pred EEEEeCCCch--------hhhhhhHHhh---------ccCCEEEEEEeCCChh-----hH----HHHHHHHHHHHhhcCC
Q 043745 21 AQIWDTAGQE--------RYRAITSAYY---------RGALGALLVYDVTKPT-----TF----ENVSRWLKELRDHADS 74 (174)
Q Consensus 21 l~l~D~~G~~--------~~~~~~~~~~---------~~~d~ii~v~d~~~~~-----s~----~~~~~~~~~i~~~~~~ 74 (174)
-.++||+|.- .....|..++ +..+|||+++|+.+-- .. ..+..-+.++....+.
T Consensus 163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4589999832 2233344443 3589999999987531 11 2334455556555566
Q ss_pred CCeEEEEEeCCCCCC
Q 043745 75 NIVIMMIGNKTDLKH 89 (174)
Q Consensus 75 ~~piilv~nK~Dl~~ 89 (174)
.+|+.|+.||+|+..
T Consensus 243 ~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 243 RFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCEEEEEecchhhc
Confidence 899999999999853
No 375
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.66 E-value=1.7 Score=30.50 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=52.7
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQ 99 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 99 (174)
.+.|+|+++.... .....+..+|.+|++.+.+. .++..+..++..+.... ...+.++.|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHH
Confidence 5789999876433 23445678999999988764 45555555555555432 2356788999986532 2222245
Q ss_pred HHHHHhCCcEE
Q 043745 100 SYAEREGLSFI 110 (174)
Q Consensus 100 ~~~~~~~~~~~ 110 (174)
++.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55666777655
No 376
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.64 E-value=0.64 Score=30.23 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=41.0
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCeEEEEEeC
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADS-NIVIMMIGNK 84 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piilv~nK 84 (174)
.+.++|+++.... .....+..+|.++++.+.+ ..++..+..++..+...... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5789999876532 2344667899999998765 45666666666666554432 3466677775
No 377
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.59 E-value=1.2 Score=34.23 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=54.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..+.++|++.-- ....-..+.++|.+|+|-..+- -.+-+++..++...+. ++|..+|.||.++.. .++
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~------s~i 231 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD------SEI 231 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc------hHH
Confidence 466778875211 1223445689999999977653 3455666666655554 689999999996543 278
Q ss_pred HHHHHHhCCcEE
Q 043745 99 QSYAEREGLSFI 110 (174)
Q Consensus 99 ~~~~~~~~~~~~ 110 (174)
++++++.|++++
T Consensus 232 e~~~~e~gi~il 243 (284)
T COG1149 232 EEYCEEEGIPIL 243 (284)
T ss_pred HHHHHHcCCCee
Confidence 899999887765
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.28 E-value=1.3 Score=36.46 Aligned_cols=86 Identities=19% Similarity=0.054 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 18 TIKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+.+.|+||+|....... ...+ ....+-++||.|++-.+.-.+. ...+.... .+--+|.||.|-...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~~---~~~g~IlTKlD~~ar- 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDSV---DVGSVIITKLDGHAK- 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhcc---CCcEEEEECccCCCC-
Confidence 467899999997644321 1111 2256889999998754332221 22232221 245677899997532
Q ss_pred CCCHHHHHHHHHHhCCcEEEEe
Q 043745 92 AVATEDAQSYAEREGLSFIETS 113 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~S 113 (174)
.-.+...+...+.|+.+++
T Consensus 255 ---gG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIFIG 273 (429)
T ss_pred ---ccHHhhhHHHHCCCeEEEc
Confidence 1123444555666665554
No 379
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.27 E-value=1.3 Score=33.03 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.|+|+++.. .......+..+|.++++...+ ..++..+...+..+........++.+|.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 58999999843 345556778899999999875 3455555432222222112245677889999864
No 380
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=92.79 E-value=1 Score=38.05 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHHH
Q 043745 58 FENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 58 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i~ 132 (174)
+.++.+.++.++++ ++|++|++||.|...+. ..+.+++++.+.|+++..+. ++-|+|-.++-+.+++.+.
T Consensus 358 l~NL~RHIenvr~F---GvPvVVAINKFd~DTe~--Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 358 FANLERHIENIRKF---GVPVVVAINKFVTDTDA--EIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHc---CCCEEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 34444455555443 79999999999986532 35678999999999877443 3555677776666665543
No 381
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=92.42 E-value=3 Score=35.49 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=57.6
Q ss_pred EECCeEE-EEEEEeCCCc-------------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH-HhhcCCCCe
Q 043745 13 QVEGRTI-KAQIWDTAGQ-------------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL-RDHADSNIV 77 (174)
Q Consensus 13 ~~~~~~~-~l~l~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p 77 (174)
++.|-++ +..++|.||. +..-.+...|+.+.+++|+|+-=.+.+.- ...+..+ .+..+.+..
T Consensus 405 tVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE---RSnVTDLVsq~DP~GrR 481 (980)
T KOG0447|consen 405 NVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE---RSIVTDLVSQMDPHGRR 481 (980)
T ss_pred eecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh---hhhHHHHHHhcCCCCCe
Confidence 3434333 5788999983 34456778899999999999853332211 1223333 233345678
Q ss_pred EEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 78 IMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 78 iilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
.|+|.+|.|+.+..-.+...++.+.+.
T Consensus 482 TIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 482 TIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred eEEEEeecchhhhccCCHHHHHHHHhc
Confidence 999999999987655566777776653
No 382
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.06 E-value=2.5 Score=29.66 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCchhhhhhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc-----
Q 043745 18 TIKAQIWDTAGQERYRAITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL----- 90 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~----- 90 (174)
.+.+.|+|+++... ......+ ..+|.++++...+ ..+...+..++..+.+... ..+-+|.|+.+....
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~~--~~~gvv~N~~~~~~~~~~~~ 141 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVNI--PILGVVENMSYFVCPHCGKK 141 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcCC--CeEEEEEcCCcccCCCCCCc
Confidence 46689999998642 1112222 5789999998765 4567777777777766532 234577899875211
Q ss_pred cCC-CHHHHHHHHHHhCCcEE
Q 043745 91 RAV-ATEDAQSYAEREGLSFI 110 (174)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~ 110 (174)
... .....+++++.++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 142 IYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred ccccCCccHHHHHHHcCCCEE
Confidence 111 23466778888776654
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.01 E-value=1.6 Score=35.96 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=49.8
Q ss_pred EEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|....... ...+ .-..+.++||+|....+ ....+...+.... ++ .=+|.||.|-...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~i-~giIlTKlD~~~~-- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--GL-TGVVLTKLDGDAR-- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--CC-CEEEEeCccCccc--
Confidence 56899999996433211 1111 22578899999987543 3333333333222 12 2456799996431
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043745 93 VATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
.-.+...+...++|+.++..
T Consensus 255 --~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 --GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 22366777778888877654
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.01 E-value=3.8 Score=34.81 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCchhhhhhhHH---hh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 18 TIKAQIWDTAGQERYRAITSA---YY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
.+.+.|+||+|.......... .+ ......++|++... +...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 356899999996533221100 01 11235677777764 334444444444332 35568889999743
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINV-EKAF 124 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~ 124 (174)
..-.........++++.+++ +|+.+ +++.
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~ 528 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRVPDDLH 528 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCchhhhh
Confidence 24566777778889988776 56666 4543
No 385
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.97 E-value=2.2 Score=36.38 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=47.4
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.|+.-++.|++++ ++...+++. .+-+|.+++++|..-.-.. ...++++.+..+.. ..++-|+++.||..
T Consensus 107 vvsgK~RRiTflEcp--~Dl~~miDv-aKIaDLVlLlIdgnfGfEM-ETmEFLnil~~HGm--PrvlgV~ThlDlfk 177 (1077)
T COG5192 107 VVSGKTRRITFLECP--SDLHQMIDV-AKIADLVLLLIDGNFGFEM-ETMEFLNILISHGM--PRVLGVVTHLDLFK 177 (1077)
T ss_pred EeecceeEEEEEeCh--HHHHHHHhH-HHhhheeEEEeccccCcee-hHHHHHHHHhhcCC--CceEEEEeeccccc
Confidence 356777789999988 444555443 4679999999997632111 12345666666543 35888999999975
No 386
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=91.89 E-value=1.3 Score=34.27 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=46.7
Q ss_pred EECCeEEEEEEEeCCCchh-------hhhh-------hHHhh-------------ccCCEEEEEEeCCChhhHHHH-HHH
Q 043745 13 QVEGRTIKAQIWDTAGQER-------YRAI-------TSAYY-------------RGALGALLVYDVTKPTTFENV-SRW 64 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~-------~~~~-------~~~~~-------------~~~d~ii~v~d~~~~~s~~~~-~~~ 64 (174)
.-++..+.+.|+||+|..+ +..+ ...++ .+.|+++++++.+.. .+..+ ...
T Consensus 57 ~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~ 135 (281)
T PF00735_consen 57 EENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEF 135 (281)
T ss_dssp EETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHH
T ss_pred ccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHH
Confidence 3477788999999999221 1000 01111 146899999998642 11121 134
Q ss_pred HHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEE
Q 043745 65 LKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 65 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 111 (174)
|..+.. .+++|-|+.|.|.-...++ -.+.+..-+...++.++.
T Consensus 136 mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 136 MKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S--
T ss_pred HHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeec
Confidence 454433 5789999999998542221 112233334555666554
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.79 E-value=1 Score=32.83 Aligned_cols=93 Identities=18% Similarity=0.107 Sum_probs=54.2
Q ss_pred EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|...+.. .+..++. ..+-+++|.|++..+. .+..+.. +....+ +- =+|.||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~~~-~~~~~~--~~-~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQALA-FYEAFG--ID-GLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHHHH-HHHHSS--TC-EEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHHHH-Hhhccc--Cc-eEEEEeecCCC---
Confidence 4579999999654432 1222221 5778999999986532 2222222 222221 12 34579999643
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
..-.+..++...++|+-.++ +|++++++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRVDDL 182 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSSTTGE
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCChhcC
Confidence 23567777888899988776 56666443
No 388
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.75 E-value=3.2 Score=30.39 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCchhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe-EEEEEeCCCCCCccCCC
Q 043745 18 TIKAQIWDTAGQERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV-IMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~~~ 94 (174)
.+-+.++|++|.-...... ....+.+|.++++++.+ ..++..+...+..+..... .+.+ ..++.|+.+.. ..
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~ 190 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE 190 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence 4678899997654322221 11124799999999764 3445444444444433322 1333 45888999854 23
Q ss_pred HHHHHHHHHHhCCcEEE
Q 043745 95 TEDAQSYAEREGLSFIE 111 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~ 111 (174)
.+...++.+.++.+++.
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 45567777877776554
No 389
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=91.34 E-value=2.8 Score=31.37 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=42.5
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
+.+.|+|+++.-.. .....+..+|.+|++...+ ..++..+...+..+.... ..++.++.|+.+.
T Consensus 112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 56789999875432 2334567899999998875 455666666665555433 2357778899875
No 390
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=90.49 E-value=2 Score=33.95 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=55.2
Q ss_pred EEEEEEeCCCchhhhhhhHHhh--------ccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYY--------RGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+-..++++.|...=......++ -..|+++-|+|+.+-..... +.+.+....... =+|++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCC
Confidence 4457788888543222222222 14688999999987533222 323222222222 267789999987
Q ss_pred ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHH
Q 043745 90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAF 124 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~ 124 (174)
+.+ .+..+...++++ .++++++. .+.+..+++
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 442 455666667665 67888776 334444333
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=90.46 E-value=1.3 Score=31.08 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCchhhhhhhHH--------hhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSA--------YYRGALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
.....|.|++|..+-...... ..-..|++++++|+.+..... ....+..++... - ++|.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d-~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----D-RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----C-EEEEecccC
Confidence 456788999997532222211 233589999999986543221 122334444322 2 457899996
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.41 E-value=3.8 Score=33.83 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=48.8
Q ss_pred EEEEEeCCCchhhhhh----hH--HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745 20 KAQIWDTAGQERYRAI----TS--AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 93 (174)
.+.|+||+|+...... .. ..+-.+|.+++|+|++..+ +.......+.... + ..-+|.||.|-...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~--- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAK--- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCc---
Confidence 6899999997654321 11 1133688999999987653 2212222222211 1 23466799996431
Q ss_pred CHHHHHHHHHHhCCcEEEEec
Q 043745 94 ATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~Sa 114 (174)
.-.+...+...+.|+.+++.
T Consensus 248 -~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEec
Confidence 23455666677777776653
No 393
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=90.27 E-value=3.4 Score=31.38 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCCCCccCCCH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl~~~~~~~~ 95 (174)
.+.+.|+|++|.-.... ....+..+|.+|++... +..++..+...+..+.... ..++++ .++.|+.+. .
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~ 187 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T 187 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence 46789999977543222 22335679999998865 4445555555444443221 235664 377899762 2
Q ss_pred HHHHHHHHHhCCcEE
Q 043745 96 EDAQSYAEREGLSFI 110 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (174)
...+++.+.++.+++
T Consensus 188 ~~~~~~~~~~g~~vl 202 (270)
T PRK13185 188 DLIDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHHHcCCCEE
Confidence 344566666665443
No 394
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=90.04 E-value=3.8 Score=30.68 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=42.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR---DHADSNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~piilv~nK~D 86 (174)
.+.+.|+|++|... ......+..+|.+|+.+..+. .++..+..++..+. .....+.+..++.|..+
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 46789999999774 445556778999998877643 33444433333322 22234678888999886
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.28 E-value=1.8 Score=30.05 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=36.0
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.+.|.||+|..... ..++..+|-++++...+-.+.+.-++. ..+ . .-=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIM-E-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHh-h-----hcCEEEEeCCC
Confidence 4668999999965322 347888999999988763333332221 111 1 22367789987
No 396
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=89.03 E-value=3.8 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=31.1
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK 66 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 66 (174)
+.+.++|+++..... ....+..+|.++++.+.+ ..++..+..+++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 567899998865322 236677899999999864 456666666555
No 397
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.94 E-value=6.7 Score=28.02 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=55.6
Q ss_pred EEEECCeEEEEEEEeCC-Cch--------------hh-------h----hhhHHhhccCCEEEEEEeCCChhhHHH-HHH
Q 043745 11 DFQVEGRTIKAQIWDTA-GQE--------------RY-------R----AITSAYYRGALGALLVYDVTKPTTFEN-VSR 63 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~-G~~--------------~~-------~----~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~ 63 (174)
++.-+|..+-+.+.|+. |.. +| . ......++.||++|+ |=--+ .+. .+.
T Consensus 43 EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~ 118 (179)
T COG1618 43 EVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKK 118 (179)
T ss_pred eeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHH
Confidence 55667888888888876 311 11 1 123444566787663 32211 111 133
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 64 WLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 64 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+...+......+.|+|.+..+.+..+ -++++ ..++..+++ .+..|-+.+++.+++.+
T Consensus 119 f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~i-k~~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 119 FREAVEEVLKSGKPLIATLHRRSRHP-------LVQRI-KKLGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred HHHHHHHHhcCCCcEEEEEecccCCh-------HHHHh-hhcCCEEEE---EccchhhHHHHHHHHHh
Confidence 44444444445788887777665422 23332 333333333 45667777777776654
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.80 E-value=6.4 Score=27.64 Aligned_cols=83 Identities=20% Similarity=0.057 Sum_probs=46.0
Q ss_pred EEEEEEeCCCchhhh----hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYR----AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
..+.+.|++|...+. .....+. ...+.+++|+|....++. ..+...+.... ++ .-+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~~-~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--GI-TGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--CC-CEEEEECCcCCCC--
Confidence 457889999974221 1112222 248999999998654322 22333333322 22 4566699997542
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043745 93 VATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ 111 (174)
.......+...++|+..
T Consensus 155 --~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 --GGAALSIRAVTGKPIKF 171 (173)
T ss_pred --cchhhhhHHHHCcCeEe
Confidence 22333367777777654
No 399
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.79 E-value=3.3 Score=38.33 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=41.9
Q ss_pred EEEEeCCCch--------hhhhhhHHh---------hccCCEEEEEEeCCChh----hHH--HHHHH---HHHHHhhcCC
Q 043745 21 AQIWDTAGQE--------RYRAITSAY---------YRGALGALLVYDVTKPT----TFE--NVSRW---LKELRDHADS 74 (174)
Q Consensus 21 l~l~D~~G~~--------~~~~~~~~~---------~~~~d~ii~v~d~~~~~----s~~--~~~~~---~~~i~~~~~~ 74 (174)
-.++||+|.. .-...|..+ .+..+|||+..|+.+-- ... .+..+ +.++.....-
T Consensus 176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~ 255 (1188)
T COG3523 176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA 255 (1188)
T ss_pred eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688998832 122344433 34689999999997521 111 11112 3334444445
Q ss_pred CCeEEEEEeCCCCCC
Q 043745 75 NIVIMMIGNKTDLKH 89 (174)
Q Consensus 75 ~~piilv~nK~Dl~~ 89 (174)
.+|++|+.||.|+..
T Consensus 256 ~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 256 RLPVYLVLTKADLLP 270 (1188)
T ss_pred CCceEEEEecccccc
Confidence 799999999999864
No 400
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=88.42 E-value=1.2 Score=31.71 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=47.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.|+|+++..... ....+..+|.+|++.+.+. .+...+..++..+.........+.+|.|+.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 457899998755333 5556778999999999865 4466677777776655432235678899998764
No 401
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=87.90 E-value=7 Score=31.43 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=51.2
Q ss_pred CCeEEEEEEEeCCCchhh--------------hhhhHHhh--------------ccCCEEEEEEeCCChhhHHHH-HHHH
Q 043745 15 EGRTIKAQIWDTAGQERY--------------RAITSAYY--------------RGALGALLVYDVTKPTTFENV-SRWL 65 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~--------------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~ 65 (174)
++..+.|++.||||--++ ....+.|+ .+.|++++....+.- .+..+ -+.|
T Consensus 78 ~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~M 156 (373)
T COG5019 78 DGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAM 156 (373)
T ss_pred CCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHH
Confidence 677788999999993211 11122222 146899999886642 22222 2344
Q ss_pred HHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEE
Q 043745 66 KELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 66 ~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 111 (174)
..+... +-+|-|+.|.|.-...++ ..+.+.+.....++++|.
T Consensus 157 k~ls~~----vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 157 KRLSKR----VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHhcc----cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 555443 557777799998543221 123344445556666663
No 402
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.87 E-value=6.1 Score=29.99 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=42.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------CCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA------DSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piilv~nK~Dl~ 88 (174)
.+.+.++|+++.-... ....+..+|.++++.+.+ ..++..+..++..+.... ..+....++.|..|..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 4678999998765332 333467899999998876 345555555555543211 1123456788988753
No 403
>CHL00175 minD septum-site determining protein; Validated
Probab=87.87 E-value=6.9 Score=29.95 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
.+.+.|+|+++.-. ......+..+|.+++|.+.+ ..++..+...+..+..... ..+.++.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence 45689999987542 23344556799999988754 3455555555555544322 235677799874
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=87.63 E-value=4.8 Score=33.24 Aligned_cols=86 Identities=20% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEEeCCCchhhhhh----hHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRAI----TSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|....... ...+ .-..+.++||.|....+ ++......+.... ++ .-+|.||.|-...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i-~giIlTKlD~~~r-- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GL-TGVILTKLDGDAR-- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CC-CEEEEeCccCccc--
Confidence 56899999996532211 1111 12567889999987542 2222233333221 12 2456699996431
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043745 93 VATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
.-.+.......++|+.+++.
T Consensus 256 --gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 12356667778888777654
No 405
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=87.17 E-value=4.9 Score=30.23 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
.+.+.|.|+.|... .+....+..+|.+|+=.-.+..+.-+ ....|+..+......++|.-|+.|+..-.. .....
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 35688999987652 23455566799988877665433222 334566666554456799999999987431 11112
Q ss_pred HHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043745 96 EDAQSYAEREGLSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~ 125 (174)
....++.. +++++.+.-.......++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22333333 47887766554444444433
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.66 E-value=17 Score=30.02 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=56.3
Q ss_pred EEEEEEeCCCchhhh----hhhHHhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 19 IKAQIWDTAGQERYR----AITSAYYR---GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
..+.|+||+|..... .....++. ...-+++|++.+-. ...+...+..+... + +--+|.||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 568999999975432 12333333 23467788888643 23333333333321 1 1246789999643
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHH
Q 043745 92 AVATEDAQSYAEREGLSFIETSALEAINV-EKAFQT 126 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~ 126 (174)
..-.+..++...++++..++ +|+++ +++...
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a 403 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRVPDDIKVA 403 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCChhhhhhC
Confidence 23467778888899988776 56664 555433
No 407
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=86.29 E-value=14 Score=28.79 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred EEEEEEEeCCCchhh-hhhhHHhhccCCEEEEEEeCCChhhH---HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745 18 TIKAQIWDTAGQERY-RAITSAYYRGALGALLVYDVTKPTTF---ENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 93 (174)
.+.+.|+|++|.-.- ..........+|.+|++.+.+ ..++ ..+...+..+......-.++.+|.|+.+...
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~---- 196 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG---- 196 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc----
Confidence 577899998664210 111122223688888887653 3344 3444444544443211224668889987522
Q ss_pred CHHHHHHHHHHhCCcEEEEec----------------cCCC-CHHHHHHHHHHHHHHHHh
Q 043745 94 ATEDAQSYAEREGLSFIETSA----------------LEAI-NVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~Sa----------------~~~~-~i~~v~~~l~~~i~~~~~ 136 (174)
..++++++++++++..-. .... ...+.|..+.+.+.....
T Consensus 197 ---~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~ 253 (296)
T TIGR02016 197 ---EAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPP 253 (296)
T ss_pred ---HHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 446667777765442110 1111 256778888887776544
No 408
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=85.85 E-value=9.5 Score=28.94 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl 87 (174)
++.+.|+|++|...... ....+..+|.+|++...+ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 46689999977543221 222367899999988764 334444444333332211 124543 467899874
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=85.51 E-value=7.6 Score=31.71 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=57.8
Q ss_pred EEEEEEeCCCchhhhhh----hHHhhcc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRAI----TSAYYRG--ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||.|+..+... ...++.. ..-+.||++++.. .+.+++.+..+....- - =++.||.|=.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i---~-~~I~TKlDET---- 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI---D-GLIFTKLDET---- 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc---c-eeEEEccccc----
Confidence 46899999998766432 3334332 3456677787753 4556666666654422 2 2456999953
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINV-EKAFQ 125 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~ 125 (174)
.+.-....+..+.+.|+..++ +|++| ++++.
T Consensus 352 ~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~v 383 (407)
T COG1419 352 TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVV 383 (407)
T ss_pred CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhh
Confidence 345566677777888876665 45543 34443
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.11 E-value=8.6 Score=34.13 Aligned_cols=104 Identities=19% Similarity=0.127 Sum_probs=58.5
Q ss_pred EEEEEeCCCchhhhh----hhHHh--hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 20 KAQIWDTAGQERYRA----ITSAY--YRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
.+.|+||+|...... ..... ....+-+++|.|.+.. +.+.++ +..+......+ +-=+|.||.|-..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~--- 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT--- 337 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC---
Confidence 589999999543221 11111 1235678899998753 344433 33332221101 2235679999643
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIYR 133 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~~ 133 (174)
..-.+..+....++++.+++ +|++| +++...-.+.+.+
T Consensus 338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~ 376 (767)
T PRK14723 338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVD 376 (767)
T ss_pred -CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHH
Confidence 23456677788899988876 57777 6664433333333
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=84.44 E-value=9.3 Score=30.17 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=51.6
Q ss_pred EEEEEEeCCCchhhhhhhHHhhc--------cCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYR--------GALGALLVYDVTKPTTFE-NVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
....++++.|..+-..+...++. ..++++.|+|+.+..... .......++.. -=+|+.||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 34577888887654444433322 358999999997632211 11112223322 1256779999975
Q ss_pred ccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHH
Q 043745 90 LRAVATEDAQSYAEREG--LSFIETSALEAINVEKAF 124 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~ 124 (174)
. .+......+.++ .+++.++ ........+|
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 2 245556666554 5666544 2223444444
No 412
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=84.43 E-value=0.87 Score=36.51 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred CCeEEEEEeCCCCCCccCCC--HHHHHHHHHHhCCcEEEEecc
Q 043745 75 NIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
.+|+++++||.|...... . ...+++++...+.+++.+||.
T Consensus 206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHH
Confidence 489999999999865322 2 466777788888889999985
No 413
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=84.32 E-value=14 Score=29.38 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=56.5
Q ss_pred EEEEEEEeCCCchh---hhhhhHHhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 18 TIKAQIWDTAGQER---YRAITSAYYRGALGALLVYDVTKPTTFE---NVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 18 ~~~l~l~D~~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+-+.|+|+.|... |...... .-+|.+|+|- ..+..++. ++.+.+..+......-.-+-+|.||.|...
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~--~~ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~-- 221 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIAR--DMAQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG-- 221 (329)
T ss_pred cCCEEEEecCCcceeccccchhhh--cCCceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc--
Confidence 35678888877442 2211111 1255554443 33445553 345555666554321123678889998632
Q ss_pred CCCHHHHHHHHHHhCCcEEEE----------------eccCCCCHHHHHHHHHHHHHHHH
Q 043745 92 AVATEDAQSYAEREGLSFIET----------------SALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~----------------Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
..+.+++.++++++-. -......+.+.|..+.+.+....
T Consensus 222 -----~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~ 276 (329)
T cd02033 222 -----EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAP 276 (329)
T ss_pred -----hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhc
Confidence 3566777777654321 01112235677777777776633
No 414
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=83.85 E-value=2.7 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=16.5
Q ss_pred HHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 98 AQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 98 ~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
..+..+.+|++++.+|++++++++++.+.+
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 344455556666666666666666655544
No 415
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=4.7 Score=32.84 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=28.5
Q ss_pred eEEEEEEEeCCCchhhh-hhhHH-----hhccCCEEEEEEeCCChhhHHH
Q 043745 17 RTIKAQIWDTAGQERYR-AITSA-----YYRGALGALLVYDVTKPTTFEN 60 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~s~~~ 60 (174)
..+.+.|.||+|+..-. ++... -.-..|-+|||.|++-.+.-..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 45678999999965322 12111 1225899999999987655443
No 416
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=83.75 E-value=12 Score=28.44 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE-EEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI-MMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ilv~nK~Dl 87 (174)
.+.+.|+|++|.-..... ...+..+|.++++... +..++..+...+..+.... ..++++ .+|.|+.+.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 467899999774322221 1235679999998765 3344554444444333221 234553 467799874
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.09 E-value=24 Score=28.80 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCchhhhh----hhHHhhccC--C-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 18 TIKAQIWDTAGQERYRA----ITSAYYRGA--L-GALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~----~~~~~~~~~--d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+.|+||+|...... ....++... + -.++|.|++.. ...+.+.+..+.... +-=+|.||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~----~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFS----YKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCC----CCEEEEEeccCCC-
Confidence 35689999999754321 122233322 3 58899999865 333334444433211 2335679999643
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIY 132 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~ 132 (174)
..-.+..++...++|+..++ +|+++ +++...-...+.
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~ 364 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFI 364 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHH
Confidence 23456677788888887775 56776 555443333333
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.06 E-value=13 Score=30.44 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=52.5
Q ss_pred EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|...+.. ....+.. ..+.+++|.+.+. ...++..++..+... + +--+|.||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l---~-i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEI---P-IDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcC---C-CCEEEEEcccCCC---
Confidence 5789999999854322 1222222 3466677777643 233333333332211 1 2345679999653
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVE 121 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 121 (174)
..-.+..++...++|+.+++ +|+++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 23456677888899988776 455554
No 419
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=82.49 E-value=4.1 Score=32.79 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.3
Q ss_pred EEEEEEeCCCch----hhhhhhHHh---hccCCEEEEEEeCCC
Q 043745 19 IKAQIWDTAGQE----RYRAITSAY---YRGALGALLVYDVTK 54 (174)
Q Consensus 19 ~~l~l~D~~G~~----~~~~~~~~~---~~~~d~ii~v~d~~~ 54 (174)
..+.|+|++|.- .-+.+...| ++.+|+++.|+++..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 468999998853 334455555 468999999999873
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=82.28 E-value=6.5 Score=30.99 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=52.6
Q ss_pred CCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 26 TAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 26 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
.+||-- --+.....++..|.||=+=|+.-+-|-++ +.++ ...+ .+|=|+|.||+||.+..+. ...++.++.+
T Consensus 29 fpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~---~~~~-~k~riiVlNK~DLad~~~~-k~~iq~~~~~ 101 (335)
T KOG2485|consen 29 FPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQ---DFLP-PKPRIIVLNKMDLADPKEQ-KKIIQYLEWQ 101 (335)
T ss_pred CchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHH---HhcC-CCceEEEEecccccCchhh-hHHHHHHHhh
Confidence 455542 22345666788999999999876544332 1122 2222 5778889999999874221 2334444444
Q ss_pred hCCcEEEEec--cCCCCHHHHHHHHHHHHH
Q 043745 105 EGLSFIETSA--LEAINVEKAFQTILSEIY 132 (174)
Q Consensus 105 ~~~~~~~~Sa--~~~~~i~~v~~~l~~~i~ 132 (174)
....++..+. ....++..++..+.....
T Consensus 102 ~~~~~~~~~c~~~~~~~v~~l~~il~~~~~ 131 (335)
T KOG2485|consen 102 NLESYIKLDCNKDCNKQVSPLLKILTILSE 131 (335)
T ss_pred cccchhhhhhhhhhhhccccHHHHHHHHHH
Confidence 2233333332 233334555544444333
No 421
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=81.75 E-value=9.6 Score=27.58 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=41.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+.|+|+++..... ......+.+|.+|+|.+... .+...+...+..+.... ...+-+|.||.|...
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQTG--SNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC--CCEEEEEEeCccccc
Confidence 3557899998632211 12234567899999998753 34555555555554432 234667889998653
No 422
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.28 E-value=17 Score=30.01 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=52.6
Q ss_pred EEEEEEeCCCchhhhh----hhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA----ITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|...... .+..+++ ..+.++||.|++-. .+.+..++..+... + .-=+|.||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~-idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---C-CCEEEEEcccCCC---
Confidence 5689999999754321 1223222 35778999987633 22333344444332 1 2235679999653
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINV 120 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 120 (174)
..-.+..++...++|+..++ +|+++
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~V 416 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDV 416 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCC
Confidence 23356677778888887776 45543
No 423
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=80.96 E-value=14 Score=30.71 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=37.2
Q ss_pred hhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 55 PTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 55 ~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
++.+..+ .+-+.++... ++|++++.|-.+-.. .-+.+...++..+++++++.++..
T Consensus 162 Re~Y~eAEervI~ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCE 218 (492)
T ss_pred hHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehH
Confidence 4555555 3455666655 689999999887533 223455677777888888887753
No 424
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.63 E-value=9.8 Score=30.27 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCchhhhhh-------hHHhhccCCE-----EEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 18 TIKAQIWDTAGQERYRAI-------TSAYYRGALG-----ALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-------~~~~~~~~d~-----ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.+-+.|.||+|+-.-... +...++..+. ++++.|++-. .++++++.+ ..... +- =++.||
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l~-GiIlTK 293 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----LD-GIILTK 293 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----Cc-eEEEEe
Confidence 356899999996432211 2233334443 7777799865 455555443 32222 22 256799
Q ss_pred CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
.|-.... -.+..++..+++|+.++- -|++++++
T Consensus 294 lDgtAKG----G~il~I~~~l~~PI~fiG--vGE~~~DL 326 (340)
T COG0552 294 LDGTAKG----GIILSIAYELGIPIKFIG--VGEGYDDL 326 (340)
T ss_pred cccCCCc----ceeeeHHHHhCCCEEEEe--CCCChhhc
Confidence 9954321 134566788899988875 46667766
No 425
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=80.14 E-value=3.6 Score=29.34 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=41.4
Q ss_pred EEEEEEeCCCchhhhhh------hHHhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 19 IKAQIWDTAGQERYRAI------TSAYYRGALGALLVYDVTKPTTFENVSR-WLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
....|.+++|...-..+ ... .-..+.+|.|+|+.+-........ +..++.. . =+++.||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-A-----DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAF-A-----DVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchh-c-----CEEEEeccccCChh
Confidence 34456677775432222 111 225689999999977544444433 3333322 1 25677999997533
Q ss_pred CCCHHHHHHHHHHhC
Q 043745 92 AVATEDAQSYAEREG 106 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~ 106 (174)
...+..++..++++
T Consensus 158 -~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 -QKIERVREMIRELN 171 (178)
T ss_dssp ---HHHHHHHHHHH-
T ss_pred -hHHHHHHHHHHHHC
Confidence 12355555555553
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.41 E-value=26 Score=27.02 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCchhhhh----hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 18 TIKAQIWDTAGQERYRA----ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+.+.|+||+|...... .+..++ -..+-++||.|++-. .+.+..++..+... + +-=+|.||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~---~-~~~~I~TKlDet~-- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA-- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC---C-CCEEEEEeecCCC--
Confidence 35789999999764321 122222 245678999998642 22333344444332 1 2335679999654
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745 92 AVATEDAQSYAEREGLSFIETSALEAINVE 121 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 121 (174)
..-.+..++...+.|+..++ +|+++-
T Consensus 226 --~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 226 --SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23355666777888888776 455543
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.37 E-value=34 Score=28.23 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred EEEEEEeCCCchhhh----hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYR----AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
..+.++||+|..... .....+. ....-.++|.|++.. .+.+.+++..+... + .-=+|.||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~---~-~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH---G-IHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC---C-CCEEEEEeeeCCC---
Confidence 357899999965432 2222221 124467889998843 22333444433322 1 2235679999643
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIYRI 134 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~~~ 134 (174)
..-.+..++...++++..++ +|+++ +++...-.+.+.++
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ 380 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHR 380 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHH
Confidence 24456677888889988776 57776 56554444444443
No 428
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=79.05 E-value=20 Score=26.96 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCchhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE-EEEeCC
Q 043745 18 TIKAQIWDTAGQERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM-MIGNKT 85 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-lv~nK~ 85 (174)
.+.+.|+|++|......+. .....-+|.+|+++..+. .++..+...+..+..... .+.++. ++.|+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCch-HHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 4678999998754322221 222335899999988753 455555554444433321 245554 444653
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.13 E-value=9.8 Score=31.39 Aligned_cols=43 Identities=23% Similarity=0.088 Sum_probs=28.1
Q ss_pred EEEEEEeCCCchhhhhhh-H-----HhhccCCEEEEEEeCCChhhHHHH
Q 043745 19 IKAQIWDTAGQERYRAIT-S-----AYYRGALGALLVYDVTKPTTFENV 61 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~-~-----~~~~~~d~ii~v~d~~~~~s~~~~ 61 (174)
+.+.++||+|+....... . .-.-+.|=++||+|+.-.+.-.+.
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 468999999976543321 1 112367899999999876544443
No 430
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.58 E-value=11 Score=31.33 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=41.2
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE 67 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 67 (174)
++.+..+-|.-+|...|+-.+++-++.+=+|+..++.|+-+=.++++.
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqT 259 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQT 259 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHH
Confidence 478888899999999999999999999999999999887665555554
No 431
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=11 Score=30.46 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCeEEEEEEEeCCCchhh--------------hhhhHHh-----------hc--cCCEEEEEEeCCChhhHHHH-HHHHH
Q 043745 15 EGRTIKAQIWDTAGQERY--------------RAITSAY-----------YR--GALGALLVYDVTKPTTFENV-SRWLK 66 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~--------------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~-~~~~~ 66 (174)
+|-.++|++.||||--+. ......| +. +.+++++....+.- .+..+ ...|.
T Consensus 75 ~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk 153 (366)
T KOG2655|consen 75 NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMK 153 (366)
T ss_pred CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHH
Confidence 677888999999993111 1112222 22 57899999887642 12222 13344
Q ss_pred HHHhhcCCCCeEEEEEeCCCCCC
Q 043745 67 ELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 67 ~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.. .+.+|-|+-|.|...
T Consensus 154 ~l~~----~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 154 KLSK----KVNLIPVIAKADTLT 172 (366)
T ss_pred HHhc----cccccceeeccccCC
Confidence 4433 467777889999754
No 432
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=76.66 E-value=19 Score=30.34 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=39.7
Q ss_pred CCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 74 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
.++|++|.+|+..-..+ -+.+.+++++.+.|+++..+. ++-|+|-.++-+.+++.+
T Consensus 355 fg~p~VVaiN~F~~Dt~--~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~ 412 (524)
T cd00477 355 FGVPVVVAINKFSTDTD--AELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEAC 412 (524)
T ss_pred cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHh
Confidence 47999999999976442 234668888999998776543 355567777766666544
No 433
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=75.53 E-value=20 Score=30.57 Aligned_cols=56 Identities=11% Similarity=0.005 Sum_probs=38.3
Q ss_pred CCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 74 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
.++|++|.+|+..-..+ -+.+.+++++.+.|+.+..+. ++-|+|-.++-+.+++.+
T Consensus 400 fg~pvVVaiN~F~~Dt~--~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~ 457 (587)
T PRK13507 400 SGINPVVCINAFYTDTH--AEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDAC 457 (587)
T ss_pred cCCCeEEEeCCCCCCCH--HHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 47999999999976442 234667888999998766433 345566666666666544
No 434
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=75.38 E-value=22 Score=26.37 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 88 (174)
.+.+.|+|+++.... .....+..+|.++++.+.+- .++..+......+... +.+ +.++.|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEKL---GTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHhc---CCceEEEEEECCCch
Confidence 356889999875532 33344567999999998753 3454443333323222 233 56888998763
No 435
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.04 E-value=7.8 Score=29.92 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=22.9
Q ss_pred EEEEeCCCchhhhhhhHHhhc----cCCEEEEEEeCCChhh
Q 043745 21 AQIWDTAGQERYRAITSAYYR----GALGALLVYDVTKPTT 57 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~----~~d~ii~v~d~~~~~s 57 (174)
.+||+.+|-+....+...-+. ..-.+|++.|+++++.
T Consensus 94 aN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 94 ANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND 134 (363)
T ss_pred HHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence 478988886654443322222 1236789999998653
No 436
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.53 E-value=51 Score=26.80 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=52.6
Q ss_pred EEEEEEeCCCchhhhhhh---HHhh---ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCC--CeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAIT---SAYY---RGALGALLVYDVTKP-TTFENVSRWLKELRDHADSN--IVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~---~~~~---~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 89 (174)
..+.|+||+|...+.... ...+ ....-.++|++++.. +....+..-+.......... -+-=+|.||.|-..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 467899999976443221 1112 233456889998864 33343322122221110000 12346679999643
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVE 121 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 121 (174)
..-.+..++...++++.+++ +|+++-
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 34466777888888888776 454443
No 437
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=72.12 E-value=1.5 Score=24.23 Aligned_cols=6 Identities=33% Similarity=1.137 Sum_probs=2.5
Q ss_pred CCCCCC
Q 043745 168 KPCCSS 173 (174)
Q Consensus 168 ~~c~~~ 173 (174)
++||||
T Consensus 24 ggcccc 29 (56)
T TIGR03602 24 GGCCCC 29 (56)
T ss_pred CCeEEE
Confidence 344443
No 438
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=71.60 E-value=30 Score=28.91 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=42.0
Q ss_pred CCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE--EeccCCCCHHHHHHHHHHHHHH
Q 043745 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE--TSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 73 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..++|++|.+||.-... +-+.+.+++++.++|+++.. +=++-++|-.++-++++..+-+
T Consensus 367 kfgvp~VVAIN~F~tDt--~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 367 KFGVPVVVAINKFPTDT--EAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HcCCCeEEEeccCCCCC--HHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 35899999999986433 22356788899999977653 3356777888877777766554
No 439
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=71.59 E-value=36 Score=26.62 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
.+.+.|+|+++... ......+..+|.++++.+.+ ..++..+..++..+..... .+.++.|.... .....
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~~~---~~~lVv~~~~~---~~~~~-- 272 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRRNP---DLRLVVRGPAP---AGLDP-- 272 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhhCC---CeEEEEeCCCC---CCCCH--
Confidence 35688999997653 33556678999999998754 4567777777776655422 34445565322 12222
Q ss_pred HHHHHHHhCCcEEE
Q 043745 98 AQSYAEREGLSFIE 111 (174)
Q Consensus 98 ~~~~~~~~~~~~~~ 111 (174)
+++.+.++.+++.
T Consensus 273 -~~i~~~lg~~v~~ 285 (322)
T TIGR03815 273 -EEIAESLGLPLLG 285 (322)
T ss_pred -HHHHHHhCCCcee
Confidence 4455556766554
No 440
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=69.52 E-value=24 Score=25.28 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 55 PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 55 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
++.-.++..|+.++... .+.++|+-|.. +.....++..++++|+.
T Consensus 45 ~~~tpe~~~W~~e~k~~---gi~v~vvSNn~---------e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 45 PDATPELRAWLAELKEA---GIKVVVVSNNK---------ESRVARAAEKLGVPFIY 89 (175)
T ss_pred CCCCHHHHHHHHHHHhc---CCEEEEEeCCC---------HHHHHhhhhhcCCceee
Confidence 45567788999998765 56788887743 34667777888888774
No 441
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=68.43 E-value=39 Score=23.91 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
+.-++++.|-+-+.+ -+.+.+.++.+..+.|++++.-|.+.....+|+.+...
T Consensus 79 ek~i~v~SNsaG~~~-~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 79 EKDIAVFSNSAGLTE-YDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred cccEEEEecCcCccc-cCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHh
Confidence 567888989887744 34567889999999999999999999988888777554
No 442
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=68.25 E-value=35 Score=29.24 Aligned_cols=56 Identities=7% Similarity=-0.078 Sum_probs=37.8
Q ss_pred CCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 74 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
.++|++|.+|+..-..+ -+.+.+++++.+ .++.+..+. ++-|+|-.++-+.+++.+
T Consensus 392 fg~pvVVaiN~F~~Dt~--~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~ 450 (578)
T PRK13506 392 YGLPVVVAINRFPTDTD--EELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRAC 450 (578)
T ss_pred cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHh
Confidence 47999999999975432 234667888888 566766444 355567777666666554
No 443
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=67.88 E-value=12 Score=25.07 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCCCccC------CCHHHHHHHHHHhCC-----cEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 77 VIMMIGNKTDLKHLRA------VATEDAQSYAEREGL-----SFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 77 piilv~nK~Dl~~~~~------~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
-++|++-|.+--.-.. .-.+.+++++.++|+ .++++||..++.+.+.++.+.+.+.+..+.
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGpn 127 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGPN 127 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCCC
Confidence 4666777665321100 112446677777775 589999999999999999999988876543
No 444
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=67.25 E-value=57 Score=25.29 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe-EEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIV-IMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p-iilv~nK~Dl 87 (174)
.+.+.++|++|.-....+ ...+..+|.+|++.+.+ ..++..+...+..+.... ..+.+ .-++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 466889999765322212 12356799999988764 345555444433333221 12333 3477899873
No 445
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=66.99 E-value=64 Score=25.76 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=52.1
Q ss_pred EEEEEEeCCCchhhhhhhHHhh-------ccCCEEEEEEeCCChhh--H--------------------HHHHH-HHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYY-------RGALGALLVYDVTKPTT--F--------------------ENVSR-WLKEL 68 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~-~~~~i 68 (174)
....+++++|..+-..+...+. -..|++|.|+|+.+-.. + ..+.. +..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567889999765444433321 15689999999975311 0 01111 12233
Q ss_pred HhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHh-C--CcEEEEeccCCCCHHHHHH
Q 043745 69 RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE-G--LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 69 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~--~~~~~~Sa~~~~~i~~v~~ 125 (174)
.. -=+|+.||+|+.+..+ .+..+...+.+ . .+++++. ........+|.
T Consensus 173 ~~------AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 AC------ADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred Hh------CCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 22 2367789999976332 23344444442 2 2566554 33446666655
No 446
>COG0218 Predicted GTPase [General function prediction only]
Probab=66.44 E-value=41 Score=24.77 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 62 SRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 62 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
..|-..+.++.....-+..+.-=+|....-...+.+..+|+...+++++-+-.+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK 144 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTK 144 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEc
Confidence 456555555544222233344445654433344568889999999987755443
No 447
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=66.00 E-value=8.4 Score=30.85 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=24.8
Q ss_pred EEEEEEeCCCchhh----hhhhHH---hhccCCEEEEEEeCCC
Q 043745 19 IKAQIWDTAGQERY----RAITSA---YYRGALGALLVYDVTK 54 (174)
Q Consensus 19 ~~l~l~D~~G~~~~----~~~~~~---~~~~~d~ii~v~d~~~ 54 (174)
..++++|++|.-.- ..+... .++.+|+++-|+++..
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 46899999885432 223333 3578999999998754
No 448
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=65.89 E-value=41 Score=25.49 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=36.6
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.....+|.++.+|+.-+...-..+.+-++.++++...+.|+.++-|-.
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 344579999999999887655666666777777777789998886654
No 449
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=65.31 E-value=9.8 Score=25.09 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=17.7
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhC-CcEEEEecc
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREG-LSFIETSAL 115 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 115 (174)
++||+|++. ..+.+.++.+++. ..++.+||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 579999854 3455666666554 678888874
No 450
>PLN02759 Formate--tetrahydrofolate ligase
Probab=64.18 E-value=48 Score=28.72 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=38.2
Q ss_pred CCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCC-cEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL-SFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 74 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
.++|++|.+|+..-..+ -+.+.+++++.++|+ .+..+. ++-|+|-.++-+.+++.+
T Consensus 449 fg~pvVVaiN~F~~Dt~--~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~ 507 (637)
T PLN02759 449 YGVNVVVAINMFATDTE--AELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKAC 507 (637)
T ss_pred cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHH
Confidence 47999999999976542 235678888999994 665444 345566666666666544
No 451
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=63.73 E-value=7 Score=33.18 Aligned_cols=58 Identities=9% Similarity=0.014 Sum_probs=35.0
Q ss_pred CCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHHH
Q 043745 73 DSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 73 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i~ 132 (174)
..++|++|.+|+.....+. +.+.+++++.++|+++..+. ++=|+|-.++-+.+++.+.
T Consensus 369 ~fGvpvVVAIN~F~tDT~a--Ei~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 369 KFGVPVVVAINRFPTDTDA--EIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp CTT--EEEEEE--TTS-HH--HHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred hcCCCeEEEecCCCCCCHH--HHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhh
Confidence 3589999999999764422 23556777788888855433 4556777787777777763
No 452
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.48 E-value=20 Score=30.14 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=55.2
Q ss_pred EEEEEEEeCCCchhhhh--h--hHHh--hccCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 18 TIKAQIWDTAGQERYRA--I--TSAY--YRGALGALLVYDVT-KPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~--~--~~~~--~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+-+.+.||+|+..-.. + ...+ ....|.|+||-.+- --++.+.+.++-..+.++..+..---++.+|.|..+
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~- 544 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVD- 544 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchh-
Confidence 46689999999754322 1 1222 34789999997654 346788888777777666543333345679999754
Q ss_pred cCCCHHHHHHH--HHHhCCcEEEEe
Q 043745 91 RAVATEDAQSY--AEREGLSFIETS 113 (174)
Q Consensus 91 ~~~~~~~~~~~--~~~~~~~~~~~S 113 (174)
...+..+ ..-.+.|++++-
T Consensus 545 ----d~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 545 ----DKVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred ----hHHHHHhhheeecCCceEEEe
Confidence 2223222 233467777663
No 453
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=62.08 E-value=68 Score=24.37 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=38.8
Q ss_pred EEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCC
Q 043745 18 TIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~D 86 (174)
.+-+.++|++|.-... ......+..+|.++++... +..++..+...+..+......+.++. ++.|+.+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p-~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASG-ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCc-hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 3567899997654212 1112223468988888875 44566655555555544322345553 6778765
No 454
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=61.86 E-value=18 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.9
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 107 LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 107 ~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
++++..||+++.|++.+++.+.+.+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 4799999999999999999887654
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=61.40 E-value=70 Score=24.28 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=35.2
Q ss_pred EEEEEEEeCCCchhhhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEE-EEEeC
Q 043745 18 TIKAQIWDTAGQERYRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIM-MIGNK 84 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-lv~nK 84 (174)
.+.+.|+|++|.-....+ ....+.-+|.+|+++..+ ..++..+..++..+.... ..+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 467889999775432221 112233689999998765 345555555444433221 1244444 44454
No 456
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=59.41 E-value=67 Score=23.54 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=41.2
Q ss_pred EEEEEEeCCCchhh-hhhhHHhhcc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQERY-RAITSAYYRG--ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~~~~-~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+.+.++|+|..... .......+.+ +|.+++|...+ ..+...+...+..+..... ...-+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~~--~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYGI--PVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCCC--CCCEEEEeCCcCc
Confidence 66899999875332 2233333443 47888888865 4456666666666665532 1345777988754
No 457
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=58.20 E-value=54 Score=24.86 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=28.7
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 70 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~ 70 (174)
+-+.|+|+|..... .....+...+|++|+|..... .+...+...+..+..
T Consensus 213 yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~-t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 213 YDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNE-TRLHELTSLKEHLSG 262 (274)
T ss_pred CCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh
Confidence 45778888765322 123334456788888877543 345555555555544
No 458
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=58.09 E-value=77 Score=27.49 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=37.3
Q ss_pred CCCeEEEEEeCCCCCCccCCCHHHHHHHHH-HhC-CcEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 74 SNIVIMMIGNKTDLKHLRAVATEDAQSYAE-REG-LSFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 74 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
.++|++|.+|+..-..+ -+.+.+++++. +.| +.+..+. ++-|+|-.++-+.+++.+
T Consensus 436 fgvpvVVAIN~F~tDT~--~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~ 495 (625)
T PTZ00386 436 FGVPVVVALNKFSTDTD--AELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVT 495 (625)
T ss_pred cCCCeEEEecCCCCCCH--HHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHH
Confidence 58999999999865432 23466788888 888 4655443 345566666666666544
No 459
>PRK13695 putative NTPase; Provisional
Probab=57.47 E-value=64 Score=22.58 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHhhccCCEEEEEEeC-CChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 37 SAYYRGALGALLVYDV-TKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
...+.+++. +++|= ...+... ..++..+......+.|+|++.+|.... .....+....+..++++
T Consensus 91 ~~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 91 ERALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred HhccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence 334456776 46662 1111111 223333333333468999998875331 23445556666777776
Q ss_pred CCCCHHHHHHHHHHHH
Q 043745 116 EAINVEKAFQTILSEI 131 (174)
Q Consensus 116 ~~~~i~~v~~~l~~~i 131 (174)
+.+|-+++.+.+++.+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 5567778777777654
No 460
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=57.28 E-value=88 Score=24.14 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=36.8
Q ss_pred cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCCC--ccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 42 GALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMMIGNKTDLKH--LRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
+.+++++.+..+- -++..+ .+++..+... +-++-|+-|.|... ++..-.+.+++-...+++.+++-...
T Consensus 155 RVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~f 226 (336)
T KOG1547|consen 155 RVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSF 226 (336)
T ss_pred eEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 3678888877663 234444 2344444333 44666678998532 12212233444455667777664443
No 461
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=56.98 E-value=2.4 Score=36.82 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=49.4
Q ss_pred EEEEEEeCCCc-------------hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 19 IKAQIWDTAGQ-------------ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 19 ~~l~l~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
..+.+.|.||. +.+..+...|+...+.+|+.+...+.+ -....|+...+...+.+...+.|.+|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 45788999983 245678899999999999999887621 112356666666665667788888888
Q ss_pred CCCC
Q 043745 86 DLKH 89 (174)
Q Consensus 86 Dl~~ 89 (174)
|+-+
T Consensus 210 Dlmd 213 (657)
T KOG0446|consen 210 DFMD 213 (657)
T ss_pred Hhhh
Confidence 8743
No 462
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=56.46 E-value=1.1e+02 Score=24.94 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------CCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA------DSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piilv~nK~Dl~ 88 (174)
.+-+.|+|+|+.-.. .....+.-+|.+|+.+..+ ..++..+...+..+.... ..+..+-++.|+.|..
T Consensus 234 ~YD~IiIDtpP~l~~--~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 234 DYDVIVIDSAPNLGI--GTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred cCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 356799999987643 3333455789999988664 334444433333322211 1122344678988754
No 463
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.21 E-value=1.2e+02 Score=25.28 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=49.3
Q ss_pred EEEEEEEeCCCchhhh----hhhHHhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYR----AITSAYYR-----GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~----~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
...+.|+||+|..... ..+..+++ ...-.+||.|++-.. +.+...+..+... + +-=+|.||.|-.
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~---~-~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL---N-YRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC---C-CCEEEEEcccCC
Confidence 4567999999964221 12222222 234678899987643 2222333333221 1 223567999964
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEec
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
. ..-.+..++...++|+..++.
T Consensus 373 ~----~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 373 D----FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred C----CccHHHHHHHHHCCCEEEEec
Confidence 3 233466777788999877764
No 464
>PRK11670 antiporter inner membrane protein; Provisional
Probab=55.88 E-value=1.1e+02 Score=24.76 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~ 88 (174)
.+-+.|+|+|+.-.-..+....+-.+|++++|...... ++.++.+.+..+.+ .++|++ +|.|+.+..
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~---~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK---VEVPVLGIVENMSMHI 282 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc---cCCCeEEEEEcCCccc
Confidence 35678999975321111111223357998888876443 33334333333332 356654 677998754
No 465
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=55.62 E-value=22 Score=27.08 Aligned_cols=78 Identities=13% Similarity=0.287 Sum_probs=49.4
Q ss_pred EeCCChhhHHHHHHHHHH--HHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 50 YDVTKPTTFENVSRWLKE--LRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 50 ~d~~~~~s~~~~~~~~~~--i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
+++.+...|..+-.|++. |+.+...+.-.+ .+... .. =.+....++..+++|+ ......++++|+
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~L-----R~i~s-~~-W~~~~~kYl~dl~cP~------~~~~~~~~ldWL 83 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKIRHYKIEDREKL-----RNIDS-SD-WPKAFEKYLKDLGCPF------SSESRQEQLDWL 83 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhhccCCHhhHHHH-----hcCCc-ch-HHHHHHHHHHhcCCCC------cchhHHHHHHHH
Confidence 467888999999999998 555432110000 00000 00 1345677888899998 445678899999
Q ss_pred HHHHHHHHhhcCC
Q 043745 128 LSEIYRIISKKSL 140 (174)
Q Consensus 128 ~~~i~~~~~~~~~ 140 (174)
+..++...=....
T Consensus 84 L~~AV~leY~Dn~ 96 (249)
T PF10036_consen 84 LGLAVRLEYKDNA 96 (249)
T ss_pred HHHHHHHHHhccc
Confidence 9988887544443
No 466
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.62 E-value=46 Score=29.53 Aligned_cols=68 Identities=18% Similarity=0.030 Sum_probs=44.4
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+.|+|+|+....... ......+|++|+|... +..+...+...+..+.+.. ....-+|.|+.|...
T Consensus 655 ~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~--~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLN--GEVTGVFLNMLDPND 722 (754)
T ss_pred hCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcC--CceEEEEecCCChhh
Confidence 356899999987643322 2334568999999875 4455666667777766543 223458889998643
No 467
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=55.28 E-value=57 Score=21.39 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=27.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.+++..+++|.+ .+........+..++.... ++|++++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~-~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNF-GIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHST-T-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCC-CCCEEEEecCC
Confidence 455555555554 4455555677788877664 89999998755
No 468
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=52.64 E-value=1.3e+02 Score=24.57 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=37.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhh---cCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDH---ADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~---~~~~~piilv~nK~Dl~ 88 (174)
.+-+.|+|+|+.-.+. ....+.-+|.+|+.+..+ ..++..+... +..+... ...+..+-++.|+.|..
T Consensus 234 ~YD~IlID~pPslg~l--t~nAL~AAd~vliPv~~~-~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 234 NYDIIVIDSAPNLGTG--TINVVCAADVIVVATPAE-LFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred cCCEEEEECCCCccHH--HHHHHHHhCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 4668999999887553 333455679988887654 2333333222 2222111 01123344678998854
No 469
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=50.93 E-value=75 Score=21.49 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=41.6
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELR---DHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
+...+..+|++|++-..-...---.++.++..+. ...-.++|+.++++--..... .......+.+...+++.++
T Consensus 64 ~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~ 140 (152)
T PF03358_consen 64 LYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVV 140 (152)
T ss_dssp HHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEE
T ss_pred HHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEc
Confidence 3455678999999987765432223344444432 222257888888665443221 2234566666677776443
No 470
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=50.59 E-value=36 Score=24.02 Aligned_cols=49 Identities=6% Similarity=-0.103 Sum_probs=29.9
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
....+..+|++|++...-+..---.++.|+..+....-.++|++++.+-
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 4445678999999977665432233455555443211246888888774
No 471
>PRK13556 azoreductase; Provisional
Probab=50.32 E-value=97 Score=22.54 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=41.5
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-------------CCCCeEEEEEeCC-CCCC-c-cC--CCHHHHH
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-------------DSNIVIMMIGNKT-DLKH-L-RA--VATEDAQ 99 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~piilv~nK~-Dl~~-~-~~--~~~~~~~ 99 (174)
..++.||++||++..-+-.---.++.|+..+.... ..+.+++++.+-- +... . .. ....-.+
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~ 164 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVA 164 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHH
Confidence 44678999999998876543345677888776531 1357777776632 2211 0 11 1123455
Q ss_pred HHHHHhCCc
Q 043745 100 SYAEREGLS 108 (174)
Q Consensus 100 ~~~~~~~~~ 108 (174)
.+..-+|+.
T Consensus 165 ~il~~~G~~ 173 (208)
T PRK13556 165 SMMGFFGVT 173 (208)
T ss_pred HHHHhcCCC
Confidence 566667754
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.49 E-value=1.6e+02 Score=24.89 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=55.6
Q ss_pred EEEEEeCCCchhhhh---hhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC
Q 043745 20 KAQIWDTAGQERYRA---ITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~ 93 (174)
.+.++||+|...... .....+.. ..-.++|+|.+... ..+.+.+..+... + .--+|.||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~~---~-~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRGP---G-LAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhccC---C-CCEEEEeCCCCcc----
Confidence 578999999543321 11111221 22367888887432 2222222222221 2 2345679999643
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCH-HHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAEREGLSFIETSALEAINV-EKAFQTILSEIYR 133 (174)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~v~~~l~~~i~~ 133 (174)
..-.+..++...++++.+++ +|+++ +++...-.+.+.+
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~ 444 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLH 444 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHH
Confidence 24566777888899988775 67777 6664433333333
No 473
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.05 E-value=66 Score=20.27 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCcEEEE
Q 043745 95 TEDAQSYAEREGLSFIET 112 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (174)
...+++.+++.+.+++.+
T Consensus 64 ~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 64 MWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 345666666667766665
No 474
>PRK06756 flavodoxin; Provisional
Probab=49.04 E-value=71 Score=21.70 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=38.4
Q ss_pred hhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 39 YYRGALGALLVYDVTKPTTF-ENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
.+.+.|+++|....-....+ ..+..++..+......+.++.++++-...-..-.-....+.+...+.|..
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~ 116 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAA 116 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCE
Confidence 35678999999866432222 23566666664433357899999883221110011234455555666654
No 475
>PRK10037 cell division protein; Provisional
Probab=48.04 E-value=1.1e+02 Score=22.80 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=27.0
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT 53 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 53 (174)
..+.+.|+|+++... ......+..+|.+|+++..+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 346789999998753 34556677899999999875
No 476
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=47.44 E-value=62 Score=24.43 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=35.3
Q ss_pred EEEEeCCCchh-hh--hhhHHhh---ccC---CEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 21 AQIWDTAGQER-YR--AITSAYY---RGA---LGALLVYDVTK-PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 21 l~l~D~~G~~~-~~--~~~~~~~---~~~---d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.++|+|||-+ |. ...+..+ ++. -+++++.|.-= .++..-+...+..+.....-++|.|=|.+|+||..
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 57899999854 32 1222222 221 24455555321 12222233333333322223789999999999854
No 477
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=47.37 E-value=1.2e+02 Score=22.80 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCchhhhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQERYRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.+.|+|++|......+ .......+|.+|+++.. +..++..+..++..+..... .. ..++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~i~~~~~-~~-~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARGIKKLKG-KL-GGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHHHHHcCC-cc-eEEEEcCCC
Confidence 356789999765432221 11112578999999876 34566666666666654432 22 234455554
No 478
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=46.65 E-value=1.2e+02 Score=22.75 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=46.1
Q ss_pred hccCCEEEEEEeCCCh-hhHHHHHHHH-HH-HHhhcCCCCeEEEEEeCCCCCCcc--C-CCHHHHHHHHHHhCCcEEEEe
Q 043745 40 YRGALGALLVYDVTKP-TTFENVSRWL-KE-LRDHADSNIVIMMIGNKTDLKHLR--A-VATEDAQSYAEREGLSFIETS 113 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~-~s~~~~~~~~-~~-i~~~~~~~~piilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~~~S 113 (174)
+.+.|.+++|+=-+-. +.-.-...|- .. +..+...++-.||-.|..-+...- . ...+++....+.+|++.+++.
T Consensus 76 ~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VD 155 (227)
T cd02011 76 FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVE 155 (227)
T ss_pred hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEEC
Confidence 5667777777643322 1111112342 11 222222344445556765544322 2 335677888888899998875
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 043745 114 ALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 114 a~~~~~i~~v~~~l~~~i~~~ 134 (174)
..+-..+.+.+...++.++..
T Consensus 156 G~D~~av~~~~a~a~~~~~~~ 176 (227)
T cd02011 156 GDDPETMHQAMAATLDWAIEE 176 (227)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 332223334444444444443
No 479
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=46.33 E-value=48 Score=22.18 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL 115 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 115 (174)
..|+++++.-.... -..++++++++.++++++.+-.-
T Consensus 12 ~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 12 KRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCcc
Confidence 57999998776533 34789999999999999866543
No 480
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=45.90 E-value=51 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=39.3
Q ss_pred Cchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 043745 28 GQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER 104 (174)
Q Consensus 28 G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 104 (174)
|.-+|++ .....+++||+|| ++++ |....+++..|..+ ++.++||+|..- ++..+...+..+
T Consensus 120 GdGDFrS~E~i~Ll~eADIVV-----TNPP-FSLFrEyv~~Li~~---~KkFlIIGN~Na------iTYkeiFplik~ 182 (336)
T PF13651_consen 120 GDGDFRSDECIELLKEADIVV-----TNPP-FSLFREYVAQLIEY---DKKFLIIGNINA------ITYKEIFPLIKE 182 (336)
T ss_pred CCCCcCcHHHHHHHhcCCEEE-----eCCC-cHHHHHHHHHHHHh---CCCEEEEecccc------ccHHHHHHHHhc
Confidence 4444543 3455677899987 6654 66666677777665 578999999853 344555555443
No 481
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=45.84 E-value=58 Score=23.50 Aligned_cols=56 Identities=16% Similarity=0.364 Sum_probs=31.3
Q ss_pred CCCchhhhhhhHHhhccCCEEEEEEeCC---ChhhHH-HHHHHHHHHHhhcCCCCeEEEEE
Q 043745 26 TAGQERYRAITSAYYRGALGALLVYDVT---KPTTFE-NVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 26 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~---~~~s~~-~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.+|.-........++...|+=++++|+. +.+.|. ++..++..++..- ++.||+++-
T Consensus 41 fsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h-P~tPIllv~ 100 (178)
T PF14606_consen 41 FSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH-PDTPILLVS 100 (178)
T ss_dssp -TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT--SSS-EEEEE
T ss_pred ecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence 4666666666666666666666666664 334444 4567777776554 378998875
No 482
>PRK06242 flavodoxin; Provisional
Probab=45.57 E-value=93 Score=21.00 Aligned_cols=67 Identities=4% Similarity=-0.066 Sum_probs=41.9
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
.+.++|+++|....-...-...+..|+..+... .+.+++++++----.. .. ...+++.+...|..++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~--~~k~~~~f~t~g~~~~-~~--~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV--SGKKAFIFSTSGLPFL-KY--HKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh--cCCeEEEEECCCCCcc-hH--HHHHHHHHHHCCCEEE
Confidence 356789999998755433344556666555332 3688999988543222 11 4566777777887665
No 483
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=45.48 E-value=1.6e+02 Score=24.13 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHH-------HHHhhcC-CCCeE-EEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLK-------ELRDHAD-SNIVI-MMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~-------~i~~~~~-~~~pi-ilv~nK~Dl~ 88 (174)
.+-+.|+|+|+.-.+. ....+..+|.+|+.+..+ ..++..+...+. .+..... .+..+ -++.|+.|..
T Consensus 251 ~yD~IiIDtpP~l~~~--t~~al~aAd~viiPv~p~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 251 DYDVVVIDCPPQLGFL--TLSGLCAATSMVITVHPQ-MLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred cCCEEEEECCCchhHH--HHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 4678999999887543 444556799999988664 334444433332 2323221 11223 3788999853
No 484
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=44.53 E-value=1.4e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=29.1
Q ss_pred EEEEEEEeCCCchhhhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH
Q 043745 18 TIKAQIWDTAGQERYRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKEL 68 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 68 (174)
.+.+.|+|++|......+ ....+.-+|.+|++...+ ..++..+...+..+
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll~~i 166 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNICKGI 166 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHHHHH
Confidence 467899999764322221 112234589999998874 44555554444433
No 485
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.44 E-value=99 Score=20.96 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=55.3
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHH
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQS 100 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 100 (174)
+.+.|+++...-........ ..++=+++++..+......++..+..+.......+++++=++.- .++ ..
T Consensus 31 feVi~lg~~~s~e~~v~aa~-e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~---------~~~-~~ 99 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAV-EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP---------PQD-FD 99 (132)
T ss_pred cEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC---------hHh-HH
Confidence 56677766433333333322 22444445556666667777777777766543345554433332 112 22
Q ss_pred HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 101 YAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 101 ~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
...+.|+.-++ -.+.++.+++..+.+.+..+
T Consensus 100 ~l~~~Gvd~~~---~~gt~~~~i~~~l~~~~~~~ 130 (132)
T TIGR00640 100 ELKEMGVAEIF---GPGTPIPESAIFLLKKLRKL 130 (132)
T ss_pred HHHHCCCCEEE---CCCCCHHHHHHHHHHHHHHh
Confidence 35667875443 24668999999888866543
No 486
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.16 E-value=64 Score=20.98 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=34.8
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
++|++ +++.++...+..+.++.+.++.....++++++-+.-..... +.+...|...+.
T Consensus 50 ~pdvV--~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~----------~~~~~~G~D~~~ 107 (119)
T cd02067 50 DADAI--GLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF----------KFLKEIGVDAYF 107 (119)
T ss_pred CCCEE--EEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH----------HHHHHcCCeEEE
Confidence 45544 44555666788888888888776432566666655433210 345666765543
No 487
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=43.83 E-value=88 Score=22.92 Aligned_cols=64 Identities=6% Similarity=0.079 Sum_probs=39.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCeEEEEEeCCCCCCc-cCCCHHHHHHHHHHh
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHA-----DSNIVIMMIGNKTDLKHL-RAVATEDAQSYAERE 105 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 105 (174)
+.|+++|+-|+.|........+|...+.+.. ....|++.|.---|.... .....+..+.|.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 6899999999998755433444544443322 135777766655676542 234456677776666
No 488
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=43.76 E-value=60 Score=22.01 Aligned_cols=40 Identities=13% Similarity=0.383 Sum_probs=29.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMM 80 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piil 80 (174)
+.-|+.||..-++...+-..+..|+..+...++ .++|++.
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 356788888877776666777899999887554 4577664
No 489
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=42.95 E-value=1.8e+02 Score=23.51 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=38.6
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC--hhhHHHHHH----HHHHHHhhcC-CCC-eEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK--PTTFENVSR----WLKELRDHAD-SNI-VIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~--~~s~~~~~~----~~~~i~~~~~-~~~-piilv~nK~Dl~ 88 (174)
.+.+.|+|+++.... .....+..+|.+|+.+..+. ..+...+.. .+..+..... .+. .+-++.|+.|..
T Consensus 234 ~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 234 DYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred cCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 456899999987644 34445567899999887653 233332222 2223332221 112 244678998853
No 490
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=42.87 E-value=1.3e+02 Score=24.25 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=41.2
Q ss_pred hhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEE-EEEeCCCCCCccCCCHHHHHHHHHHhCC
Q 043745 39 YYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIM-MIGNKTDLKHLRAVATEDAQSYAEREGL 107 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 107 (174)
..+..|.|+|.-|.-..-+..+. .-|+..+.=....++|.. +++|+-|.. .+..+++..++..+..
T Consensus 97 ~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes---~ltr~ql~~~i~~lP~ 164 (379)
T KOG1432|consen 97 ASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES---DLTRLQLMKFISKLPY 164 (379)
T ss_pred hccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc---ccCHHHHHHHHhcCCC
Confidence 34688999999887766444444 456555543333578854 556776653 3566777777665543
No 491
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=42.85 E-value=45 Score=23.47 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=37.9
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCC
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL 107 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 107 (174)
+..-+..+|++||+...-+..---.++.|+..+....-.++|+.++++--....... ....++.+...++.
T Consensus 59 l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v~~~~~gg~~~~~~~-~~~~l~~~l~~l~~ 129 (171)
T TIGR03567 59 ATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVVLPIATGGSIAHLLA-IDYALKPVLSALGA 129 (171)
T ss_pred HHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEEEEEEcCCchhHHHH-HHHHHHHHHHHcCC
Confidence 444567899999997765532222345555444221124678888777533221111 01235566666775
No 492
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=42.39 E-value=1.6e+02 Score=22.82 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=64.1
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHhhc--CCCCeEEEEEeCCCCCC--------ccCCCHHHHHHHHHHhCCcEE
Q 043745 42 GALGALLVYDVTKPTTFENVS-RWLKELRDHA--DSNIVIMMIGNKTDLKH--------LRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~--~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~ 110 (174)
++++++++++.++.++.+... +.+.. .... ..+--++|++.+.|... +..+.......+.+..=.|.|
T Consensus 63 ~~QiaVv~vpSt~g~~IE~ya~rlfd~-W~lG~k~~~dGvLLlVa~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i~P~f 141 (271)
T COG1512 63 GAQIAVVTVPSTGGETIEQYATRLFDK-WKLGDKAQDDGVLLLVAMNDRRVRIEVGYGLEGVLTDAQAGRIIRETIAPAF 141 (271)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHh-cCCCccccCCCEEEEEEcCCCeEEEEEecCcccccChHHHHHHHHhhhCccc
Confidence 689999999999877776542 22222 1122 23456888889999421 234666677777776655555
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 043745 111 ETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA 146 (174)
Q Consensus 111 ~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~~~~ 146 (174)
+..+....++..++.+.+....+..+.+...
T Consensus 142 -----r~gny~~gi~~~id~l~~~l~g~~~~~~~~~ 172 (271)
T COG1512 142 -----RDGNYAGGLEAGIDRLVALLAGEPLPSPARA 172 (271)
T ss_pred -----ccCcHHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 3446888888888888888776655554433
No 493
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=42.11 E-value=50 Score=25.32 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=21.8
Q ss_pred CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 107 LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 107 ~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+|++..||.++.|+..+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 5889999999999999999887654
No 494
>PRK13660 hypothetical protein; Provisional
Probab=41.73 E-value=1.3e+02 Score=21.72 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=6.8
Q ss_pred hccCCEEEEEEeCC
Q 043745 40 YRGALGALLVYDVT 53 (174)
Q Consensus 40 ~~~~d~ii~v~d~~ 53 (174)
+.++|++|++||-.
T Consensus 127 v~~sd~~i~~YD~e 140 (182)
T PRK13660 127 LEHTDGALLVYDEE 140 (182)
T ss_pred HHccCeEEEEEcCC
Confidence 34455555555543
No 495
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=9.2 Score=25.42 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=5.5
Q ss_pred CCCCCCCC
Q 043745 165 NTKKPCCS 172 (174)
Q Consensus 165 ~~~~~c~~ 172 (174)
..|++|||
T Consensus 59 rkKSKcCC 66 (121)
T KOG4102|consen 59 RKKSKCCC 66 (121)
T ss_pred ccccceeE
Confidence 45677877
No 496
>PRK05569 flavodoxin; Provisional
Probab=39.29 E-value=1.2e+02 Score=20.32 Aligned_cols=88 Identities=8% Similarity=0.001 Sum_probs=48.3
Q ss_pred hhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE-Eecc
Q 043745 39 YYRGALGALLVYDVTKPTTF--ENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE-TSAL 115 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~ 115 (174)
-+.++|+++|....-....+ ..+..++..+......+.+++++++--.- .. -.....+++....|+.++. +..
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~-~~--~~~~~~~~~l~~~g~~~~~~~~~- 120 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWD-NG--EFMKLWKDRMKDYGFNVIGDLAV- 120 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCC-CC--cHHHHHHHHHHHCCCeEeeeEEE-
Confidence 45688999999876433211 34556666664433357899999875321 11 1234556667777876543 332
Q ss_pred CCCCHHHHHHHHHHH
Q 043745 116 EAINVEKAFQTILSE 130 (174)
Q Consensus 116 ~~~~i~~v~~~l~~~ 130 (174)
.+..-++.++.+.+.
T Consensus 121 ~~~p~~~~~~~~~~~ 135 (141)
T PRK05569 121 NESPNKEELNSAKEL 135 (141)
T ss_pred ccCCCHHHHHHHHHH
Confidence 233333444444433
No 497
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=39.12 E-value=64 Score=27.55 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--HHHHHHHHHHh--------C
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--TEDAQSYAERE--------G 106 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~--------~ 106 (174)
....++.-.+..|+|.++... .....+..... ..-.++.+||.|+....... -+..+.+.... +
T Consensus 105 ~~~~~~~~~~~~vvd~~d~p~-----~i~p~~~~~v~-~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en 178 (572)
T KOG1249|consen 105 SEKQENPALARKVVDLSDEPC-----SIDPLLTNDVG-SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGEN 178 (572)
T ss_pred hhhhhcccceEEeeecccCcc-----ccccchhhccc-CCceEeeccccccccccccchHHHHHHhhcccceeecccccC
Confidence 333344345666677766433 22333433333 23379999999997533211 11122211100 0
Q ss_pred -C------cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 107 -L------SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 107 -~------~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
. ....++++++.|++++.-.+....
T Consensus 179 ~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 179 LNPDFDFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred CCcccchhhhhhhhhhhcccHHHHHHHhhhee
Confidence 1 234688899999999888776553
No 498
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=38.49 E-value=63 Score=23.40 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=36.6
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCC
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGL 107 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 107 (174)
+...+..+|++||+...-+..---.++.|+..+....-.++|++++++--.... ....+..++.+...++.
T Consensus 60 ~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~~~l~~K~v~iiat~G~~~~-~~~~~~~lr~~l~~l~a 130 (191)
T PRK10569 60 FTEQLAQADGLIVATPVYKASFSGALKTLLDLLPERALEHKVVLPLATGGSVAH-MLAVDYALKPVLSALKA 130 (191)
T ss_pred HHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCChhhhCCCEEEEEEecCCchh-HHHHHHHHHHHHHHcCC
Confidence 445567899999998765532111223333333211124678888888522211 11111345556666664
No 499
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=37.82 E-value=13 Score=21.74 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 043745 165 NTKKPCCS 172 (174)
Q Consensus 165 ~~~~~c~~ 172 (174)
..+++|||
T Consensus 33 kkkSK~CC 40 (60)
T PF07491_consen 33 KKKSKCCC 40 (60)
T ss_pred cccCceee
Confidence 34555555
No 500
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=36.73 E-value=1.3e+02 Score=24.59 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHhhcCCCCeEEEEEeCCCCCCccCCCHH---HHHHHHHHhCCcEEEEeccCCCC
Q 043745 68 LRDHADSNIVIMMIGNKTDLKHLRAVATE---DAQSYAEREGLSFIETSALEAIN 119 (174)
Q Consensus 68 i~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~ 119 (174)
|......++|.|+..--.+....+.++.. +..+++++++++++.-+++..+|
T Consensus 178 idevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaEN 232 (471)
T COG3033 178 IDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAEN 232 (471)
T ss_pred HHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhh
Confidence 33334467998887766666666677664 46777899999998877765554
Done!