Query 043745
Match_columns 174
No_of_seqs 120 out of 1400
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.9E-35 6.6E-40 218.1 16.0 133 4-136 44-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.5E-28 8.5E-33 177.8 17.4 135 4-138 39-176 (206)
3 2bov_A RAla, RAS-related prote 100.0 3.8E-27 1.3E-31 171.0 19.0 134 4-137 45-181 (206)
4 2fu5_C RAS-related protein RAB 100.0 3.2E-27 1.1E-31 168.7 16.9 129 11-139 49-177 (183)
5 3cpj_B GTP-binding protein YPT 100.0 2.1E-27 7E-32 175.3 14.0 131 9-139 52-182 (223)
6 1vg8_A RAS-related protein RAB 99.9 7.5E-27 2.6E-31 169.7 13.3 129 9-138 47-180 (207)
7 2hup_A RAS-related protein RAB 99.9 5.5E-26 1.9E-30 165.2 17.7 132 4-135 60-195 (201)
8 3tkl_A RAS-related protein RAB 99.9 1.5E-25 5.1E-30 161.4 19.0 130 9-138 55-184 (196)
9 3q72_A GTP-binding protein RAD 99.9 3.4E-26 1.2E-30 160.6 15.0 125 10-134 40-165 (166)
10 2a5j_A RAS-related protein RAB 99.9 1.7E-25 6E-30 161.0 18.7 129 9-137 60-188 (191)
11 2ew1_A RAS-related protein RAB 99.9 1.2E-25 4.2E-30 163.7 17.8 132 4-135 57-191 (201)
12 3tw8_B RAS-related protein RAB 99.9 9.2E-26 3.1E-30 160.2 16.4 128 10-138 49-176 (181)
13 3q85_A GTP-binding protein REM 99.9 4.9E-26 1.7E-30 160.3 14.4 123 11-133 43-167 (169)
14 2nzj_A GTP-binding protein REM 99.9 1.3E-25 4.4E-30 158.8 16.5 127 9-135 42-171 (175)
15 1zbd_A Rabphilin-3A; G protein 99.9 3.9E-25 1.3E-29 160.4 19.1 135 4-138 39-176 (203)
16 2bme_A RAB4A, RAS-related prot 99.9 2.8E-25 9.5E-30 158.8 18.1 136 4-139 41-179 (186)
17 2o52_A RAS-related protein RAB 99.9 2.9E-25 1E-29 161.2 17.2 131 9-139 64-194 (200)
18 2gf9_A RAS-related protein RAB 99.9 4.7E-25 1.6E-29 158.4 17.8 132 4-135 53-187 (189)
19 4dsu_A GTPase KRAS, isoform 2B 99.9 4.3E-25 1.5E-29 157.9 17.3 128 10-138 43-171 (189)
20 1z0f_A RAB14, member RAS oncog 99.9 5.3E-25 1.8E-29 156.0 17.5 130 4-133 46-178 (179)
21 3dz8_A RAS-related protein RAB 99.9 8.4E-26 2.9E-30 162.7 12.9 127 10-136 63-189 (191)
22 2j0v_A RAC-like GTP-binding pr 99.9 4.4E-26 1.5E-30 166.6 11.5 131 4-135 40-182 (212)
23 3kkq_A RAS-related protein M-R 99.9 9.3E-25 3.2E-29 155.8 18.2 130 4-133 49-182 (183)
24 2efe_B Small GTP-binding prote 99.9 7.6E-25 2.6E-29 155.7 17.6 130 4-133 43-175 (181)
25 2oil_A CATX-8, RAS-related pro 99.9 8.9E-25 3E-29 157.4 18.1 133 4-136 56-191 (193)
26 3t5g_A GTP-binding protein RHE 99.9 2.3E-25 7.9E-30 158.7 14.8 132 4-135 37-171 (181)
27 2g6b_A RAS-related protein RAB 99.9 6.9E-25 2.4E-29 155.8 17.2 124 11-134 52-175 (180)
28 3cbq_A GTP-binding protein REM 99.9 7.4E-25 2.5E-29 158.7 17.4 125 9-133 62-188 (195)
29 2fn4_A P23, RAS-related protei 99.9 7.8E-25 2.7E-29 155.4 17.2 132 4-135 40-174 (181)
30 1z08_A RAS-related protein RAB 99.9 2.2E-25 7.7E-30 156.9 14.1 129 4-132 37-168 (170)
31 2il1_A RAB12; G-protein, GDP, 99.9 4.7E-25 1.6E-29 159.1 16.0 130 4-133 57-190 (192)
32 3q3j_B RHO-related GTP-binding 99.9 2.1E-25 7.2E-30 163.8 14.2 131 4-135 58-205 (214)
33 1r2q_A RAS-related protein RAB 99.9 9.9E-25 3.4E-29 153.3 17.1 128 4-131 37-167 (170)
34 3cph_A RAS-related protein SEC 99.9 1.8E-24 6.3E-29 157.7 19.0 129 10-139 60-188 (213)
35 3ihw_A Centg3; RAS, centaurin, 99.9 1.6E-24 5.6E-29 155.4 17.3 127 4-135 51-182 (184)
36 2a9k_A RAS-related protein RAL 99.9 2.3E-24 7.8E-29 153.7 17.8 133 4-136 49-184 (187)
37 1u8z_A RAS-related protein RAL 99.9 1.3E-24 4.3E-29 152.3 16.2 130 4-133 35-167 (168)
38 1ek0_A Protein (GTP-binding pr 99.9 1.5E-24 5.1E-29 152.4 16.6 128 4-131 34-167 (170)
39 3c5c_A RAS-like protein 12; GD 99.9 5.1E-25 1.8E-29 158.3 14.4 128 4-132 52-185 (187)
40 2q3h_A RAS homolog gene family 99.9 1.7E-24 5.7E-29 156.8 17.1 132 4-136 51-198 (201)
41 1z0j_A RAB-22, RAS-related pro 99.9 2.9E-24 9.8E-29 151.0 17.8 128 4-131 37-167 (170)
42 2iwr_A Centaurin gamma 1; ANK 99.9 2.7E-24 9.3E-29 152.7 17.6 130 4-138 37-174 (178)
43 1g16_A RAS-related protein SEC 99.9 1E-24 3.5E-29 153.4 15.0 124 10-134 43-166 (170)
44 2fg5_A RAB-22B, RAS-related pr 99.9 8.7E-25 3E-29 157.6 14.9 130 4-133 54-186 (192)
45 3reg_A RHO-like small GTPase; 99.9 2.5E-24 8.6E-29 155.2 17.2 129 4-133 54-188 (194)
46 2g3y_A GTP-binding protein GEM 99.9 1.7E-24 6E-29 158.9 16.6 126 9-134 77-204 (211)
47 2yc2_C IFT27, small RAB-relate 99.9 9.7E-25 3.3E-29 158.4 14.9 134 4-137 53-196 (208)
48 2atx_A Small GTP binding prote 99.9 2.6E-24 8.9E-29 155.0 17.0 128 4-132 49-192 (194)
49 3bc1_A RAS-related protein RAB 99.9 4.5E-24 1.5E-28 153.0 18.1 121 18-138 69-190 (195)
50 2hxs_A RAB-26, RAS-related pro 99.9 1.3E-24 4.6E-29 154.1 15.1 125 9-133 45-173 (178)
51 2f7s_A C25KG, RAS-related prot 99.9 9.9E-25 3.4E-29 159.9 14.7 122 18-139 83-205 (217)
52 2p5s_A RAS and EF-hand domain 99.9 1.3E-24 4.3E-29 157.5 14.8 124 9-132 67-196 (199)
53 2gf0_A GTP-binding protein DI- 99.9 6.7E-25 2.3E-29 158.4 13.3 128 4-132 39-170 (199)
54 1c1y_A RAS-related protein RAP 99.9 2.4E-24 8.1E-29 151.0 15.5 128 4-131 34-165 (167)
55 1z2a_A RAS-related protein RAB 99.9 2E-24 6.8E-29 151.6 14.9 129 4-133 36-167 (168)
56 2y8e_A RAB-protein 6, GH09086P 99.9 2.3E-24 7.9E-29 152.7 15.3 129 4-132 45-176 (179)
57 1x3s_A RAS-related protein RAB 99.9 5.6E-24 1.9E-28 152.9 17.3 130 4-134 46-179 (195)
58 1kao_A RAP2A; GTP-binding prot 99.9 3.7E-24 1.3E-28 149.8 16.0 124 9-132 41-165 (167)
59 1z06_A RAS-related protein RAB 99.9 4.7E-24 1.6E-28 153.2 16.6 129 4-132 51-187 (189)
60 3oes_A GTPase rhebl1; small GT 99.9 8.1E-25 2.8E-29 158.8 12.2 132 4-135 55-189 (201)
61 2atv_A RERG, RAS-like estrogen 99.9 7.7E-24 2.6E-28 153.0 16.8 131 4-135 59-193 (196)
62 1m7b_A RND3/RHOE small GTP-bin 99.9 2.4E-24 8.2E-29 154.2 13.7 129 4-133 38-183 (184)
63 3t1o_A Gliding protein MGLA; G 99.9 6.8E-25 2.3E-29 157.8 10.7 122 13-137 68-196 (198)
64 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.8E-23 6.1E-28 148.1 17.6 129 4-133 38-174 (177)
65 3l0i_B RAS-related protein RAB 99.9 2.1E-26 7.3E-31 166.9 2.1 123 11-133 74-196 (199)
66 4djt_A GTP-binding nuclear pro 99.9 1.5E-24 5E-29 159.1 11.7 122 16-137 58-179 (218)
67 1gwn_A RHO-related GTP-binding 99.9 3.5E-24 1.2E-28 156.4 13.6 129 4-133 59-204 (205)
68 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-23 6.3E-28 151.7 17.0 129 4-133 56-200 (201)
69 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.3E-23 4.3E-28 149.9 15.8 128 4-132 36-179 (186)
70 2j1l_A RHO-related GTP-binding 99.9 7.1E-24 2.4E-28 155.5 14.7 130 4-134 65-210 (214)
71 3clv_A RAB5 protein, putative; 99.9 4.8E-23 1.6E-27 148.6 18.4 114 19-135 93-206 (208)
72 3con_A GTPase NRAS; structural 99.9 5.2E-23 1.8E-27 147.6 17.8 126 9-135 59-185 (190)
73 2ce2_X GTPase HRAS; signaling 99.9 8.2E-23 2.8E-27 142.6 18.0 128 4-132 34-164 (166)
74 2cjw_A GTP-binding protein GEM 99.9 4.3E-23 1.5E-27 149.0 16.9 127 9-135 46-174 (192)
75 1ky3_A GTP-binding protein YPT 99.9 1.9E-23 6.4E-28 148.4 14.4 125 11-135 49-180 (182)
76 2erx_A GTP-binding protein DI- 99.9 2.2E-23 7.7E-28 146.6 14.3 128 4-131 34-165 (172)
77 3bwd_D RAC-like GTP-binding pr 99.9 3E-24 1E-28 152.8 9.5 120 12-132 49-180 (182)
78 2fv8_A H6, RHO-related GTP-bin 99.9 7.2E-23 2.5E-27 149.2 16.4 129 4-133 56-200 (207)
79 3gj0_A GTP-binding nuclear pro 99.9 2E-23 7E-28 153.5 11.9 129 4-135 46-177 (221)
80 4gzl_A RAS-related C3 botulinu 99.9 2.5E-23 8.6E-28 151.5 12.3 127 4-131 61-203 (204)
81 2f9l_A RAB11B, member RAS onco 99.9 7.7E-22 2.6E-26 142.9 18.9 140 4-143 36-178 (199)
82 4bas_A ADP-ribosylation factor 99.9 2.8E-23 9.5E-28 149.8 11.1 130 3-135 48-191 (199)
83 1f6b_A SAR1; gtpases, N-termin 99.9 9E-23 3.1E-27 147.9 13.0 123 4-130 55-196 (198)
84 1r8s_A ADP-ribosylation factor 99.9 1.5E-23 5.3E-28 146.7 8.4 127 4-133 30-162 (164)
85 1m2o_B GTP-binding protein SAR 99.9 2.3E-22 7.8E-27 144.9 13.5 123 4-130 53-189 (190)
86 3llu_A RAS-related GTP-binding 99.9 3.5E-23 1.2E-27 149.7 8.1 114 16-131 66-195 (196)
87 1upt_A ARL1, ADP-ribosylation 99.9 1.6E-22 5.6E-27 142.2 10.7 126 4-133 37-169 (171)
88 3th5_A RAS-related C3 botulinu 99.8 1.4E-24 4.8E-29 157.8 0.0 118 13-131 72-203 (204)
89 2wkq_A NPH1-1, RAS-related C3 99.9 1.2E-21 4.2E-26 151.7 15.6 129 4-133 186-330 (332)
90 1zj6_A ADP-ribosylation factor 99.9 1.7E-21 5.9E-26 139.5 15.1 126 4-133 46-178 (187)
91 1fzq_A ADP-ribosylation factor 99.9 6E-22 2E-26 141.5 12.2 119 11-133 54-178 (181)
92 2h57_A ADP-ribosylation factor 99.9 1.5E-21 5.2E-26 140.1 14.4 126 4-133 53-187 (190)
93 1cip_A Protein (guanine nucleo 99.9 2.1E-22 7.2E-27 158.0 10.4 131 3-135 178-346 (353)
94 2b6h_A ADP-ribosylation factor 99.9 1E-22 3.6E-27 146.9 7.8 114 17-132 71-190 (192)
95 1zd9_A ADP-ribosylation factor 99.9 4.2E-23 1.4E-27 148.3 5.4 117 15-133 63-185 (188)
96 1ksh_A ARF-like protein 2; sma 99.9 3.3E-21 1.1E-25 137.7 15.2 126 4-133 48-180 (186)
97 2h17_A ADP-ribosylation factor 99.9 1.7E-21 5.8E-26 138.9 12.9 123 4-130 51-180 (181)
98 2x77_A ADP-ribosylation factor 99.9 3.6E-22 1.2E-26 143.2 9.0 126 4-133 52-184 (189)
99 1moz_A ARL1, ADP-ribosylation 99.9 6.9E-21 2.4E-25 135.5 13.8 127 4-134 48-181 (183)
100 2xtz_A Guanine nucleotide-bind 99.9 1.3E-21 4.4E-26 153.5 9.6 133 4-136 163-348 (354)
101 3lvq_E ARF-GAP with SH3 domain 99.9 3.2E-22 1.1E-26 163.5 5.6 122 14-137 361-488 (497)
102 1azs_C GS-alpha; complex (lyas 99.9 4.8E-21 1.6E-25 152.1 11.8 132 3-136 202-388 (402)
103 2zej_A Dardarin, leucine-rich 99.9 6.2E-22 2.1E-26 141.8 6.1 117 16-133 53-178 (184)
104 3ohm_A Guanine nucleotide-bind 99.8 2.8E-21 9.7E-26 149.8 9.8 131 2-134 151-319 (327)
105 1oix_A RAS-related protein RAB 99.8 5.9E-20 2E-24 132.3 16.1 128 4-131 60-190 (191)
106 1zcb_A G alpha I/13; GTP-bindi 99.8 3.8E-21 1.3E-25 151.3 9.8 132 3-136 186-356 (362)
107 3r7w_B Gtpase2, GTP-binding pr 99.8 3.5E-22 1.2E-26 154.4 3.4 127 4-134 33-175 (331)
108 3o47_A ADP-ribosylation factor 99.8 5.3E-22 1.8E-26 154.6 4.3 116 16-133 206-327 (329)
109 2fh5_B SR-beta, signal recogni 99.8 3.5E-21 1.2E-25 140.7 6.4 120 11-130 45-213 (214)
110 3r7w_A Gtpase1, GTP-binding pr 99.8 4.9E-20 1.7E-24 142.2 10.8 117 12-131 46-179 (307)
111 2wji_A Ferrous iron transport 99.8 5.5E-20 1.9E-24 129.4 9.8 111 12-131 45-163 (165)
112 3c5h_A Glucocorticoid receptor 99.8 1.1E-20 3.6E-25 142.3 6.5 117 14-132 90-254 (255)
113 4fid_A G protein alpha subunit 99.8 2.5E-20 8.4E-25 145.1 8.6 131 2-133 145-328 (340)
114 2qu8_A Putative nucleolar GTP- 99.8 1.5E-19 5.1E-24 133.6 12.2 118 19-137 76-209 (228)
115 1u0l_A Probable GTPase ENGC; p 99.8 6.6E-20 2.2E-24 141.2 9.4 119 3-129 48-169 (301)
116 2cxx_A Probable GTP-binding pr 99.8 2.4E-19 8.4E-24 128.0 7.9 113 20-135 45-186 (190)
117 3iev_A GTP-binding protein ERA 99.8 6.5E-19 2.2E-23 136.0 10.5 111 18-131 58-180 (308)
118 2lkc_A Translation initiation 99.8 5.7E-19 1.9E-23 124.9 8.7 115 11-134 49-172 (178)
119 3dpu_A RAB family protein; roc 99.8 4.9E-19 1.7E-23 145.9 7.7 113 17-133 96-208 (535)
120 2wjg_A FEOB, ferrous iron tran 99.8 1.3E-18 4.3E-23 124.3 8.8 108 19-133 54-169 (188)
121 3a1s_A Iron(II) transport prot 99.8 8.1E-19 2.8E-23 132.3 7.7 107 18-131 51-165 (258)
122 2gj8_A MNME, tRNA modification 99.8 2.2E-19 7.6E-24 127.3 3.8 113 10-132 45-165 (172)
123 3b1v_A Ferrous iron uptake tra 99.8 8.8E-19 3E-23 133.1 6.8 111 13-131 44-162 (272)
124 2dyk_A GTP-binding protein; GT 99.8 2.8E-18 9.6E-23 119.3 8.9 109 12-131 44-160 (161)
125 3iby_A Ferrous iron transport 99.7 2.4E-18 8.1E-23 129.6 5.5 110 12-130 43-164 (256)
126 4dcu_A GTP-binding protein ENG 99.7 3E-17 1E-21 132.9 11.6 118 11-134 237-370 (456)
127 2hjg_A GTP-binding protein ENG 99.7 2.6E-17 8.9E-22 132.6 10.2 116 13-134 219-350 (436)
128 1svi_A GTP-binding protein YSX 99.7 1.3E-17 4.4E-22 119.7 7.3 108 20-131 70-193 (195)
129 1nrj_B SR-beta, signal recogni 99.7 2E-18 6.8E-23 126.3 3.1 101 19-119 55-170 (218)
130 3pqc_A Probable GTP-binding pr 99.7 1.6E-17 5.4E-22 118.9 7.3 107 20-132 69-193 (195)
131 3gee_A MNME, tRNA modification 99.7 5.4E-17 1.8E-21 131.8 10.5 109 19-132 281-397 (476)
132 3i8s_A Ferrous iron transport 99.7 1.1E-17 3.9E-22 127.0 3.7 106 19-131 50-167 (274)
133 2e87_A Hypothetical protein PH 99.7 2.9E-16 1E-20 123.4 11.8 113 19-134 214-337 (357)
134 1mky_A Probable GTP-binding pr 99.7 3.2E-16 1.1E-20 126.3 12.1 104 20-133 50-166 (439)
135 3k53_A Ferrous iron transport 99.7 1.2E-16 4E-21 121.2 8.3 108 19-132 50-165 (271)
136 1lnz_A SPO0B-associated GTP-bi 99.7 9.2E-17 3.2E-21 125.5 7.5 110 19-132 206-329 (342)
137 3cb4_D GTP-binding protein LEP 99.7 1.3E-15 4.5E-20 126.6 14.3 112 15-132 67-181 (599)
138 1wf3_A GTP-binding protein; GT 99.7 9.6E-17 3.3E-21 123.5 6.6 107 18-131 54-171 (301)
139 1xzp_A Probable tRNA modificat 99.7 6.8E-16 2.3E-20 125.5 11.9 113 11-134 285-406 (482)
140 3qq5_A Small GTP-binding prote 99.6 9.8E-17 3.4E-21 128.5 5.9 106 20-133 84-196 (423)
141 2ywe_A GTP-binding protein LEP 99.6 2.3E-15 7.8E-20 125.0 13.1 112 15-132 69-183 (600)
142 4dhe_A Probable GTP-binding pr 99.6 1.6E-15 5.5E-20 111.0 9.8 116 16-135 76-213 (223)
143 2hjg_A GTP-binding protein ENG 99.6 2E-16 6.7E-21 127.4 4.3 105 19-132 51-164 (436)
144 3sjy_A Translation initiation 99.6 5.5E-15 1.9E-19 117.9 12.1 111 19-131 75-190 (403)
145 2elf_A Protein translation elo 99.6 2.3E-15 7.7E-20 118.9 8.1 115 14-134 55-181 (370)
146 3geh_A MNME, tRNA modification 99.6 2.5E-15 8.4E-20 121.7 8.2 111 11-133 266-384 (462)
147 2yv5_A YJEQ protein; hydrolase 99.6 4.2E-15 1.4E-19 114.4 8.0 97 29-128 66-164 (302)
148 2qtf_A Protein HFLX, GTP-bindi 99.6 5.3E-14 1.8E-18 110.8 13.5 121 11-134 220-355 (364)
149 1s0u_A EIF-2-gamma, translatio 99.6 3.9E-14 1.3E-18 113.2 11.9 107 19-131 81-196 (408)
150 1mky_A Probable GTP-binding pr 99.5 8.2E-14 2.8E-18 112.2 13.7 117 12-134 223-356 (439)
151 1ega_A Protein (GTP-binding pr 99.5 5.6E-15 1.9E-19 113.6 6.5 109 18-131 55-173 (301)
152 3tr5_A RF-3, peptide chain rel 99.5 5.4E-14 1.8E-18 115.6 11.4 74 12-89 75-148 (528)
153 3p26_A Elongation factor 1 alp 99.5 4E-14 1.4E-18 115.3 10.2 111 11-123 103-228 (483)
154 1wb1_A Translation elongation 99.5 7E-14 2.4E-18 113.8 10.4 107 19-132 73-188 (482)
155 2c78_A Elongation factor TU-A; 99.5 2.4E-14 8E-19 114.3 7.3 104 12-119 68-180 (405)
156 2ged_A SR-beta, signal recogni 99.5 1.4E-14 4.7E-19 103.7 5.3 75 18-92 90-173 (193)
157 1kk1_A EIF2gamma; initiation o 99.5 8E-14 2.7E-18 111.4 10.2 108 18-131 82-198 (410)
158 3l82_B F-box only protein 4; T 99.5 1.6E-14 5.3E-19 104.6 5.0 104 26-132 109-222 (227)
159 3j2k_7 ERF3, eukaryotic polype 99.5 6.8E-14 2.3E-18 112.7 9.4 109 14-125 90-217 (439)
160 1jny_A EF-1-alpha, elongation 99.5 5.6E-15 1.9E-19 118.9 2.7 111 14-125 79-205 (435)
161 1g7s_A Translation initiation 99.5 2.9E-13 1E-17 112.5 12.5 109 20-135 71-220 (594)
162 1d2e_A Elongation factor TU (E 99.5 7.7E-14 2.6E-18 111.1 8.2 113 14-130 61-192 (397)
163 4dcu_A GTP-binding protein ENG 99.5 1.8E-14 6.1E-19 116.6 4.5 105 18-131 70-183 (456)
164 1zun_B Sulfate adenylate trans 99.5 7E-14 2.4E-18 112.5 7.7 107 16-125 101-216 (434)
165 1r5b_A Eukaryotic peptide chai 99.5 1.4E-14 4.6E-19 117.6 2.8 106 19-124 121-243 (467)
166 2xtp_A GTPase IMAP family memb 99.4 9.5E-14 3.2E-18 104.3 5.7 113 19-133 71-208 (260)
167 3lxx_A GTPase IMAP family memb 99.4 3.6E-13 1.2E-17 99.9 8.4 116 13-132 74-213 (239)
168 3avx_A Elongation factor TS, e 99.4 2E-13 7E-18 119.4 7.4 113 13-129 353-482 (1289)
169 3l2o_B F-box only protein 4; s 99.4 3.3E-13 1.1E-17 102.1 7.0 106 26-133 194-308 (312)
170 2qag_A Septin-2, protein NEDD5 99.4 2.9E-14 1E-18 112.2 1.3 118 14-136 90-236 (361)
171 3lxw_A GTPase IMAP family memb 99.4 8.4E-13 2.9E-17 98.7 8.5 115 19-133 70-208 (247)
172 1f60_A Elongation factor EEF1A 99.4 2.8E-13 9.7E-18 109.7 6.2 107 14-123 80-202 (458)
173 3izy_P Translation initiation 99.4 4.2E-14 1.4E-18 116.1 0.9 109 19-131 52-166 (537)
174 2dy1_A Elongation factor G; tr 99.4 5.2E-12 1.8E-16 106.5 11.4 74 11-88 66-139 (665)
175 3t5d_A Septin-7; GTP-binding p 99.3 7.6E-13 2.6E-17 100.3 5.5 112 15-130 61-201 (274)
176 3izq_1 HBS1P, elongation facto 99.3 3.5E-13 1.2E-17 112.5 3.9 106 16-123 242-362 (611)
177 1zo1_I IF2, translation initia 99.3 2.1E-13 7E-18 111.2 0.7 104 19-129 51-163 (501)
178 1udx_A The GTP-binding protein 99.3 6.4E-12 2.2E-16 100.4 9.1 113 19-134 205-326 (416)
179 2aka_B Dynamin-1; fusion prote 99.3 2.1E-12 7.1E-17 98.5 4.9 113 19-134 125-254 (299)
180 1dar_A EF-G, elongation factor 99.3 4.6E-11 1.6E-15 101.1 13.2 68 18-89 76-143 (691)
181 2h5e_A Peptide chain release f 99.3 3E-11 1E-15 99.4 11.6 73 13-89 76-148 (529)
182 2rdo_7 EF-G, elongation factor 99.2 1.3E-10 4.4E-15 98.6 13.2 69 17-89 80-148 (704)
183 3h2y_A GTPase family protein; 99.2 6.4E-11 2.2E-15 93.3 10.0 96 28-130 55-157 (368)
184 3t34_A Dynamin-related protein 99.2 7.7E-12 2.6E-16 98.2 3.8 107 19-127 136-255 (360)
185 2xex_A Elongation factor G; GT 99.2 5.9E-10 2E-14 94.4 14.1 68 18-89 74-141 (693)
186 2j69_A Bacterial dynamin-like 99.2 9.5E-11 3.3E-15 99.2 9.0 111 20-133 175-325 (695)
187 3mca_A HBS1, elongation factor 99.2 2E-12 6.9E-17 107.6 -1.3 103 16-121 252-371 (592)
188 1pui_A ENGB, probable GTP-bind 99.2 1.8E-10 6.2E-15 83.2 9.1 107 20-132 73-198 (210)
189 3ec1_A YQEH GTPase; atnos1, at 99.1 2.4E-10 8.3E-15 90.1 8.2 97 27-130 56-159 (369)
190 3vqt_A RF-3, peptide chain rel 99.1 8.3E-10 2.8E-14 91.2 11.1 75 11-89 92-166 (548)
191 3def_A T7I23.11 protein; chlor 99.1 2.8E-10 9.7E-15 85.5 7.6 80 12-94 79-170 (262)
192 1jwy_B Dynamin A GTPase domain 99.1 4.7E-10 1.6E-14 86.1 8.2 111 19-132 131-261 (315)
193 1yrb_A ATP(GTP)binding protein 99.1 8E-10 2.7E-14 82.6 9.1 109 19-132 109-256 (262)
194 2wsm_A Hydrogenase expression/ 99.0 3.2E-10 1.1E-14 82.6 5.7 106 19-135 109-216 (221)
195 3p32_A Probable GTPase RV1496/ 99.0 3.1E-10 1.1E-14 88.9 5.4 103 19-133 172-284 (355)
196 2qnr_A Septin-2, protein NEDD5 99.0 9.7E-11 3.3E-15 89.9 1.7 114 15-134 72-215 (301)
197 1h65_A Chloroplast outer envel 99.0 1.9E-09 6.4E-14 81.3 7.9 82 13-95 81-174 (270)
198 1puj_A YLQF, conserved hypothe 98.9 4.9E-09 1.7E-13 79.7 8.4 100 25-134 5-107 (282)
199 1n0u_A EF-2, elongation factor 98.9 2.1E-09 7.1E-14 92.8 6.9 70 15-88 94-163 (842)
200 1jal_A YCHF protein; nucleotid 98.9 2.8E-08 9.7E-13 77.9 12.3 42 75-116 199-240 (363)
201 1wxq_A GTP-binding protein; st 98.9 8.6E-10 2.9E-14 87.7 3.4 48 75-124 214-261 (397)
202 2qag_C Septin-7; cell cycle, c 98.8 1.7E-09 5.9E-14 86.4 3.2 109 18-130 87-224 (418)
203 3j25_A Tetracycline resistance 98.8 2.9E-09 9.8E-14 89.5 4.4 75 11-89 59-133 (638)
204 2p67_A LAO/AO transport system 98.8 8.8E-09 3E-13 80.3 6.0 104 19-133 149-261 (341)
205 2x2e_A Dynamin-1; nitration, h 98.8 5.6E-10 1.9E-14 87.4 -1.1 109 19-130 130-255 (353)
206 4fn5_A EF-G 1, elongation fact 98.7 1.1E-07 3.9E-12 80.7 12.3 68 17-88 83-150 (709)
207 2www_A Methylmalonic aciduria 98.7 1.4E-07 4.8E-12 73.7 10.2 103 19-133 167-279 (349)
208 2qpt_A EH domain-containing pr 98.6 7.4E-08 2.5E-12 79.6 6.8 68 20-90 155-233 (550)
209 3zvr_A Dynamin-1; hydrolase, D 98.4 7.2E-08 2.5E-12 82.0 2.7 108 20-130 151-275 (772)
210 1t9h_A YLOQ, probable GTPase E 98.4 2.3E-07 7.7E-12 71.3 4.8 90 33-125 77-169 (307)
211 3cnl_A YLQF, putative uncharac 98.4 1.9E-07 6.5E-12 70.2 4.3 91 26-129 4-97 (262)
212 2dby_A GTP-binding protein; GD 98.4 1.4E-06 4.7E-11 68.6 8.6 50 75-124 201-253 (368)
213 2qm8_A GTPase/ATPase; G protei 98.4 1E-06 3.6E-11 68.5 7.7 104 18-132 147-260 (337)
214 2hf9_A Probable hydrogenase ni 98.3 6.4E-07 2.2E-11 65.1 5.3 58 76-133 165-224 (226)
215 4a9a_A Ribosome-interacting GT 98.3 9.2E-06 3.1E-10 64.0 11.1 91 13-107 115-222 (376)
216 2rcn_A Probable GTPase ENGC; Y 98.2 6.4E-06 2.2E-10 64.5 8.5 86 39-127 127-213 (358)
217 2ohf_A Protein OLA1, GTP-bindi 97.5 4.3E-05 1.5E-09 60.5 3.2 38 20-57 87-131 (396)
218 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 0.00092 3.1E-08 52.9 10.2 42 75-116 224-269 (392)
219 2j37_W Signal recognition part 97.2 0.0006 2E-08 55.7 6.1 101 19-130 184-310 (504)
220 3dm5_A SRP54, signal recogniti 95.9 0.036 1.2E-06 44.5 8.2 86 19-114 183-274 (443)
221 4dzz_A Plasmid partitioning pr 95.7 0.043 1.5E-06 38.6 7.4 85 19-110 76-162 (206)
222 1j8m_F SRP54, signal recogniti 95.4 0.085 2.9E-06 40.0 8.6 91 19-122 181-280 (297)
223 3ec1_A YQEH GTPase; atnos1, at 95.4 0.00077 2.6E-08 52.9 -3.0 91 21-116 214-314 (369)
224 3ea0_A ATPase, para family; al 95.0 0.31 1.1E-05 35.0 10.3 86 19-112 119-204 (245)
225 3kl4_A SRP54, signal recogniti 94.2 0.16 5.3E-06 40.7 7.4 90 19-120 180-277 (433)
226 3cwq_A Para family chromosome 94.2 0.45 1.5E-05 33.7 9.2 85 19-110 68-153 (209)
227 3end_A Light-independent proto 93.1 1.5 5.3E-05 32.7 11.0 84 19-111 157-242 (307)
228 1wcv_1 SOJ, segregation protei 93.0 0.79 2.7E-05 33.4 9.0 68 18-88 111-182 (257)
229 2v3c_C SRP54, signal recogniti 92.9 1.1 3.7E-05 35.7 10.3 83 19-112 181-271 (432)
230 2ph1_A Nucleotide-binding prot 92.9 0.55 1.9E-05 34.4 8.0 90 18-111 128-224 (262)
231 3k9g_A PF-32 protein; ssgcid, 91.7 0.77 2.6E-05 33.5 7.6 64 19-86 145-208 (267)
232 1hyq_A MIND, cell division inh 91.5 2.3 7.9E-05 30.8 10.0 83 19-110 111-193 (263)
233 3q9l_A Septum site-determining 91.3 0.38 1.3E-05 34.9 5.5 66 19-87 114-185 (260)
234 1g3q_A MIND ATPase, cell divis 91.1 2.4 8.2E-05 30.1 9.6 83 19-110 112-194 (237)
235 1tq4_A IIGP1, interferon-induc 88.7 4.9 0.00017 31.8 10.2 106 20-131 121-251 (413)
236 3kjh_A CO dehydrogenase/acetyl 88.1 1.9 6.6E-05 30.7 7.1 64 18-86 131-194 (254)
237 2oze_A ORF delta'; para, walke 87.6 3.6 0.00012 30.4 8.6 83 19-106 155-241 (298)
238 3h2y_A GTPase family protein; 85.6 0.033 1.1E-06 43.6 -3.9 88 21-113 213-310 (368)
239 2xj4_A MIPZ; replication, cell 83.6 1.8 6.3E-05 32.0 5.2 68 19-89 104-192 (286)
240 1cp2_A CP2, nitrogenase iron p 83.4 11 0.00036 27.2 10.7 87 19-110 116-205 (269)
241 3pg5_A Uncharacterized protein 83.2 6.8 0.00023 30.1 8.4 41 18-61 153-193 (361)
242 2xxa_A Signal recognition part 82.0 13 0.00043 29.6 9.6 83 19-112 184-273 (433)
243 3bfv_A CAPA1, CAPB2, membrane 80.6 5.1 0.00018 29.5 6.6 66 19-89 192-258 (271)
244 4a9a_A Ribosome-interacting GT 79.4 4.2 0.00014 31.8 5.9 49 75-130 249-297 (376)
245 2afh_E Nitrogenase iron protei 79.0 16 0.00056 26.7 9.8 88 18-110 118-208 (289)
246 2ark_A Flavodoxin; FMN, struct 78.1 14 0.00047 25.3 7.9 84 19-108 35-121 (188)
247 3szr_A Interferon-induced GTP- 76.4 4.2 0.00014 33.8 5.4 66 20-88 148-227 (608)
248 3e70_C DPA, signal recognition 75.7 7.9 0.00027 29.5 6.5 91 21-123 214-310 (328)
249 3ez9_A Para; DNA binding, wing 73.8 15 0.00052 28.5 7.9 66 19-86 248-321 (403)
250 2ffh_A Protein (FFH); SRP54, s 72.7 24 0.00081 28.0 8.7 85 19-113 181-271 (425)
251 2vzf_A NADH-dependent FMN redu 72.6 9.3 0.00032 26.4 5.8 71 38-110 65-136 (197)
252 2qag_B Septin-6, protein NEDD5 72.6 1.7 5.9E-05 34.6 2.1 65 45-114 151-217 (427)
253 2a5l_A Trp repressor binding p 72.2 15 0.00053 25.0 6.9 74 37-110 66-143 (200)
254 1zu4_A FTSY; GTPase, signal re 70.3 32 0.0011 25.9 9.9 92 19-123 192-296 (320)
255 1bif_A 6-phosphofructo-2-kinas 68.4 8.3 0.00028 30.8 5.3 50 21-71 89-148 (469)
256 3la6_A Tyrosine-protein kinase 66.9 30 0.001 25.6 7.8 66 20-89 203-268 (286)
257 3cio_A ETK, tyrosine-protein k 66.3 16 0.00055 27.2 6.3 65 19-88 214-279 (299)
258 2zki_A 199AA long hypothetical 66.0 15 0.0005 25.2 5.6 74 38-111 66-143 (199)
259 3sop_A Neuronal-specific septi 65.3 6.4 0.00022 29.0 3.8 65 42-111 111-178 (270)
260 2yhs_A FTSY, cell division pro 63.2 30 0.001 28.1 7.5 91 20-123 377-480 (503)
261 3gfs_A FMN-dependent NADPH-azo 62.7 14 0.00047 24.9 4.9 74 36-110 57-130 (174)
262 1ko7_A HPR kinase/phosphatase; 61.2 9.8 0.00034 28.9 4.2 54 69-129 74-127 (314)
263 3ha2_A NADPH-quinone reductase 61.2 36 0.0012 23.2 7.0 64 21-85 31-102 (177)
264 3do6_A Formate--tetrahydrofola 60.8 19 0.00065 29.3 5.9 67 60-131 348-416 (543)
265 3b6i_A Flavoprotein WRBA; flav 59.5 25 0.00085 23.9 5.9 73 38-111 64-140 (198)
266 2px0_A Flagellar biosynthesis 59.3 24 0.00082 26.3 6.1 85 19-113 183-273 (296)
267 1vma_A Cell division protein F 56.0 61 0.0021 24.2 9.6 91 20-123 188-291 (306)
268 4hs4_A Chromate reductase; tri 55.0 22 0.00077 24.7 5.0 73 36-109 67-142 (199)
269 3k1y_A Oxidoreductase; structu 54.4 19 0.00066 25.0 4.5 72 36-108 79-150 (191)
270 1ydg_A Trp repressor binding p 53.9 20 0.00067 24.9 4.6 75 37-111 73-151 (211)
271 1ls1_A Signal recognition part 53.2 66 0.0023 23.8 9.1 92 19-122 181-278 (295)
272 3ez2_A Plasmid partition prote 52.1 31 0.0011 26.6 5.9 34 19-54 245-278 (398)
273 1byi_A Dethiobiotin synthase; 50.9 58 0.002 22.4 10.3 87 19-111 109-201 (224)
274 2amj_A Modulator of drug activ 50.7 59 0.002 22.5 7.6 49 19-68 48-96 (204)
275 3svl_A Protein YIEF; E. coli C 46.9 54 0.0018 22.5 5.9 74 36-110 66-142 (193)
276 3fwy_A Light-independent proto 46.1 91 0.0031 23.3 11.0 84 19-111 164-249 (314)
277 3lcm_A SMU.1420, putative oxid 45.8 31 0.001 23.8 4.5 100 37-136 68-186 (196)
278 3u7r_A NADPH-dependent FMN red 45.3 26 0.0009 24.3 4.0 72 36-108 61-136 (190)
279 2q62_A ARSH; alpha/beta, flavo 44.8 40 0.0014 24.4 5.1 71 36-108 92-167 (247)
280 1rtt_A Conserved hypothetical 42.9 22 0.00074 24.3 3.3 71 38-109 68-141 (193)
281 3hyn_A Putative signal transdu 42.3 49 0.0017 23.1 4.9 53 30-86 67-120 (189)
282 2fz5_A Flavodoxin; alpha/beta 42.0 62 0.0021 20.2 5.8 68 39-110 43-112 (137)
283 3fvw_A Putative NAD(P)H-depend 41.8 35 0.0012 23.4 4.3 72 36-109 61-142 (192)
284 3pzx_A Formate--tetrahydrofola 41.4 14 0.00049 30.1 2.3 63 67-131 366-428 (557)
285 1u96_A Cytochrome C oxidase co 40.8 20 0.00067 20.7 2.2 13 162-174 15-27 (69)
286 1uf3_A Hypothetical protein TT 39.6 87 0.003 21.3 6.7 60 21-84 9-73 (228)
287 1t0i_A YLR011WP; FMN binding p 39.4 38 0.0013 22.9 4.1 72 36-111 78-149 (191)
288 1rli_A Trp repressor binding p 38.2 29 0.00099 23.2 3.3 73 38-110 67-151 (184)
289 1ccw_A Protein (glutamate muta 35.7 88 0.003 20.1 9.2 81 42-131 54-134 (137)
290 2yvt_A Hypothetical protein AQ 35.7 1.1E+02 0.0038 21.4 7.3 37 21-57 9-47 (260)
291 3d7n_A Flavodoxin, WRBA-like p 35.6 30 0.001 23.7 3.1 71 38-108 50-124 (193)
292 2ohf_A Protein OLA1, GTP-bindi 33.2 10 0.00036 29.8 0.4 42 75-116 222-267 (396)
293 1d4a_A DT-diaphorase, quinone 31.9 71 0.0024 23.3 4.8 47 40-86 91-150 (273)
294 5nul_A Flavodoxin; electron tr 31.8 66 0.0023 20.3 4.2 67 39-109 42-110 (138)
295 3f2v_A General stress protein 31.3 64 0.0022 22.3 4.2 50 37-86 53-111 (192)
296 3cf4_G Acetyl-COA decarboxylas 30.6 72 0.0025 21.4 4.3 34 75-112 35-68 (170)
297 1t5b_A Acyl carrier protein ph 29.7 1.3E+02 0.0043 20.2 9.4 73 38-110 82-169 (201)
298 2hpv_A FMN-dependent NADH-azor 28.3 1.4E+02 0.0048 20.2 10.5 72 39-110 91-175 (208)
299 1ag9_A Flavodoxin; electron tr 28.0 66 0.0023 21.5 3.8 71 39-109 42-115 (175)
300 2q9u_A A-type flavoprotein; fl 27.4 1E+02 0.0035 23.6 5.2 66 39-108 304-371 (414)
301 2nx2_A Hypothetical protein YP 27.3 1E+02 0.0034 21.1 4.6 13 40-52 128-140 (181)
302 3eb2_A Putative dihydrodipicol 26.7 1.1E+02 0.0037 22.7 5.0 59 41-103 98-156 (300)
303 3tem_A Ribosyldihydronicotinam 25.9 96 0.0033 21.9 4.4 48 39-86 89-149 (228)
304 1obo_A Flavodoxin; electron tr 25.8 76 0.0026 20.8 3.7 72 39-110 43-117 (169)
305 3ezx_A MMCP 1, monomethylamine 25.4 1.8E+02 0.006 20.4 6.2 41 42-82 143-184 (215)
306 3fkq_A NTRC-like two-domain pr 25.1 78 0.0027 24.1 4.1 49 18-69 259-307 (373)
307 4ici_A Putative flavoprotein; 24.0 1.4E+02 0.0048 19.8 4.9 45 39-86 84-128 (171)
308 1xky_A Dihydrodipicolinate syn 24.0 1E+02 0.0035 22.9 4.5 39 41-81 106-144 (301)
309 2ehh_A DHDPS, dihydrodipicolin 24.0 1.1E+02 0.0036 22.7 4.5 53 41-102 94-151 (294)
310 3m3g_A EPL1 protein; fungal, p 23.8 1.3E+02 0.0046 19.2 4.3 26 3-28 57-82 (120)
311 3uc9_A Increased recombination 23.6 11 0.00038 27.4 -1.0 19 43-61 103-121 (233)
312 2vc6_A MOSA, dihydrodipicolina 23.5 1.1E+02 0.0037 22.6 4.5 38 41-80 94-131 (292)
313 1w3i_A EDA, 2-keto-3-deoxy glu 23.4 1.1E+02 0.0039 22.5 4.6 39 41-81 90-129 (293)
314 2yxg_A DHDPS, dihydrodipicolin 23.3 1.1E+02 0.0037 22.5 4.5 38 41-80 94-131 (289)
315 2l0y_B HCG2020266, COX17 cytoc 23.2 17 0.00059 20.7 0.0 12 163-174 20-31 (67)
316 1uoz_A Putative cellulase; hyd 23.1 1.2E+02 0.004 23.1 4.5 38 44-82 91-138 (315)
317 3rl5_A Metallophosphoesterase 23.1 41 0.0014 25.2 2.0 60 21-87 63-122 (296)
318 3cpr_A Dihydrodipicolinate syn 22.9 1.1E+02 0.0039 22.7 4.5 39 41-81 110-148 (304)
319 3m5v_A DHDPS, dihydrodipicolin 22.9 1.1E+02 0.0038 22.7 4.5 67 41-111 102-169 (301)
320 3l9w_A Glutathione-regulated p 22.8 1.2E+02 0.0041 23.7 4.8 50 37-86 287-345 (413)
321 3qze_A DHDPS, dihydrodipicolin 22.7 1.2E+02 0.0039 22.8 4.5 39 41-81 117-155 (314)
322 1sqs_A Conserved hypothetical 22.6 2E+02 0.007 20.1 10.1 71 38-110 75-149 (242)
323 3si9_A DHDPS, dihydrodipicolin 22.5 1.1E+02 0.0039 22.9 4.5 57 41-105 116-176 (315)
324 3s2y_A Chromate reductase; ura 27.9 19 0.00063 25.1 0.0 72 36-108 67-141 (199)
325 3sum_A Cerato-platanin-like pr 22.1 1.6E+02 0.0056 19.3 4.5 29 2-30 56-84 (136)
326 3tak_A DHDPS, dihydrodipicolin 22.1 1.2E+02 0.0042 22.3 4.5 39 41-81 95-133 (291)
327 1o5k_A DHDPS, dihydrodipicolin 22.0 1.1E+02 0.0038 22.8 4.3 58 41-102 106-163 (306)
328 2ojp_A DHDPS, dihydrodipicolin 21.9 1.1E+02 0.0039 22.5 4.3 37 42-80 96-132 (292)
329 3r6w_A FMN-dependent NADH-azor 21.8 2E+02 0.0067 19.7 11.3 80 38-117 83-186 (212)
330 1ykg_A SIR-FP, sulfite reducta 21.8 1.8E+02 0.006 19.1 7.1 91 40-135 54-153 (167)
331 3daq_A DHDPS, dihydrodipicolin 21.7 1.1E+02 0.0037 22.6 4.2 58 42-103 97-154 (292)
332 2v9d_A YAGE; dihydrodipicolini 21.6 1.2E+02 0.004 23.1 4.4 59 41-103 125-183 (343)
333 3flu_A DHDPS, dihydrodipicolin 21.5 1.3E+02 0.0043 22.3 4.5 39 41-81 101-139 (297)
334 2ohh_A Type A flavoprotein FPR 21.4 2.7E+02 0.0091 21.0 9.1 86 19-110 286-374 (404)
335 1f4p_A Flavodoxin; electron tr 21.4 96 0.0033 19.7 3.5 69 40-109 45-118 (147)
336 1f6k_A N-acetylneuraminate lya 21.2 1.1E+02 0.0039 22.5 4.2 39 41-81 98-136 (293)
337 3l21_A DHDPS, dihydrodipicolin 21.0 1.2E+02 0.0039 22.7 4.2 54 41-102 109-166 (304)
338 1ycg_A Nitric oxide reductase; 20.9 2.7E+02 0.0093 20.9 7.3 68 39-110 299-366 (398)
339 2zay_A Response regulator rece 20.9 1.6E+02 0.0053 18.1 6.4 76 42-133 52-128 (147)
340 1s2d_A Purine trans deoxyribos 20.4 1.7E+02 0.0059 19.7 4.6 39 39-82 78-116 (167)
341 3d0c_A Dihydrodipicolinate syn 20.4 1.1E+02 0.0037 22.9 3.9 54 41-102 105-158 (314)
342 2r8w_A AGR_C_1641P; APC7498, d 20.1 1.1E+02 0.0037 23.2 3.9 38 41-80 128-165 (332)
343 3e96_A Dihydrodipicolinate syn 20.0 98 0.0033 23.2 3.6 53 42-102 106-158 (316)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.9e-35 Score=218.07 Aligned_cols=133 Identities=35% Similarity=0.659 Sum_probs=117.7
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.++||||+|+++|..++..|+++++++++|||++++++|+.+..|+..+......++|++|
T Consensus 44 ~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piil 123 (216)
T 4dkx_A 44 ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123 (216)
T ss_dssp ------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred CccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 6777 4556778999999999999999999999999999999999999999999999999999999877767899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
||||+|+.+.+.++.+++++++.++++.|+++||++|.||+++|+.|++.+.....
T Consensus 124 VgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred EeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 99999999888999999999999999999999999999999999999998876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=2.5e-28 Score=177.83 Aligned_cols=135 Identities=44% Similarity=0.794 Sum_probs=121.0
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|...+..+++++|++|||||+++.+++..+..|+..+......+.|+++
T Consensus 39 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (206)
T 2bcg_Y 39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118 (206)
T ss_dssp CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 5555 3346678899999999999999999999999999999999999999999999999999998877656799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+++.+.+.+.....
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999887788889999999999999999999999999999999999998765443
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=3.8e-27 Score=171.05 Aligned_cols=134 Identities=31% Similarity=0.509 Sum_probs=119.5
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ....+.+++..+.+.||||+|++.|..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus 45 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (206)
T 2bov_A 45 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124 (206)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred CccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4555 334567889889999999999999999999999999999999999999999999999999877653 4799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|+++++.+......
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 125 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 181 (206)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcccc
Confidence 999999988778889999999999999999999999999999999999999876433
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=3.2e-27 Score=168.66 Aligned_cols=129 Identities=44% Similarity=0.808 Sum_probs=104.4
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+......++|+++|+||+|+.+.
T Consensus 49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 49 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp EEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred EEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 45568888999999999999999999999999999999999999999999999999988765567999999999999877
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
+.+..++++.++..++++++++||+++.|++++|+++.+.+.+...+..
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~ 177 (183)
T 2fu5_C 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177 (183)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 7888899999999999999999999999999999999999998776554
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=175.32 Aligned_cols=131 Identities=56% Similarity=0.974 Sum_probs=113.2
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.||||+|+++|..++..+++.+|++|+|||+++..+++.+..|+..+......++|++||+||+|+.
T Consensus 52 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 52 TRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 34567888889999999999999999999999999999999999999999999999999887765679999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
+.+.+..+++..++...+++++++||+++.|++++|+++++.+.+.....+
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 777888899999999999999999999999999999999999887654443
No 6
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=7.5e-27 Score=169.73 Aligned_cols=129 Identities=43% Similarity=0.694 Sum_probs=112.3
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNK 84 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK 84 (174)
.+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++++++..+..|+..+..... .++|+++|+||
T Consensus 47 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 47 TKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 34556788889999999999999999999999999999999999999999999999988866542 36899999999
Q ss_pred CCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 85 TDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
+|+.+ +.+..++++.++. ..+++++++||+++.|++++|+++++.+.+.....
T Consensus 127 ~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 127 IDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180 (207)
T ss_dssp TTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 99983 5677888888887 66789999999999999999999999998766443
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=165.22 Aligned_cols=132 Identities=46% Similarity=0.769 Sum_probs=117.0
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++++.+..|+..+......++|+++
T Consensus 60 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 139 (201)
T 2hup_A 60 STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139 (201)
T ss_dssp -----CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 5555 2446677888899999999999999999999999999999999999999999999999998877656799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..+++++++..+++ +++++||+++.|++++|+++++.+.+..
T Consensus 140 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999987778889999999999999 9999999999999999999999988654
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=161.43 Aligned_cols=130 Identities=45% Similarity=0.786 Sum_probs=118.3
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
...+.+++..+.+.|||++|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus 55 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 55 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 34567788899999999999999999999999999999999999999999999999999988776689999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
+.+.+..++.+.++..++++++++||+++.|++++|+++.+.+.++....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 88888899999999999999999999999999999999999998875543
No 9
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.94 E-value=3.4e-26 Score=160.60 Aligned_cols=125 Identities=26% Similarity=0.352 Sum_probs=99.2
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
+.+.+++..+.+.+||++|++.|..++..+++.+|++++|||++++++++.+..|+..+..... .++|+++|+||+|+.
T Consensus 40 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 3566899999999999999999999999999999999999999999999999999998876532 579999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 8788999999999999999999999999999999999999988764
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=1.7e-25 Score=161.03 Aligned_cols=129 Identities=52% Similarity=0.876 Sum_probs=118.2
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++++.+..|+..+......+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 60 ARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 34567788899999999999999999999999999999999999999999999999999887765689999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
+.+.+..++++.++...+++++++||+++.|++++|+++++.+.+...+
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7778888999999999999999999999999999999999999887644
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.2e-25 Score=163.68 Aligned_cols=132 Identities=36% Similarity=0.682 Sum_probs=119.4
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+......++|+++
T Consensus 57 ~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (201)
T 2ew1_A 57 ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136 (201)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4555 3346678899999999999999999999999999999999999999999999999999998877666799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++++.+.+..
T Consensus 137 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999877788889999999999999999999999999999999999988765
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=9.2e-26 Score=160.24 Aligned_cols=128 Identities=44% Similarity=0.766 Sum_probs=117.8
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
..+.+++..+.+.|||++|++.+...+..+++++|++++|||+++++++..+..|+..+..... ++|+++|+||+|+.+
T Consensus 49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE 127 (181)
T ss_dssp EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG
T ss_pred EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch
Confidence 4566788889999999999999999999999999999999999999999999999999877654 799999999999988
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
.+.+..++...++...+++++++||+++.|++++|+++.+.+.....+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 7888889999999999999999999999999999999999998876554
No 13
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.94 E-value=4.9e-26 Score=160.26 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=106.8
Q ss_pred EEEECCeEEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
.+.+++..+.+.+||++|++.+.. ++..+++++|++++|||++++++++.+..|+..+..... .++|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 43 RIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 556788899999999999999876 788889999999999999999999999999999877654 479999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+.+..++++.++..++++++++||+++.|++++|+++++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999999999999998765
No 14
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=158.78 Aligned_cols=127 Identities=25% Similarity=0.345 Sum_probs=107.3
Q ss_pred eeEEEECCeEEEEEEEeCCCchh--hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQER--YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKT 85 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 85 (174)
.+.+.+++..+.+.+|||+|++. +..++..+++.+|++++|||++++++|+.+..|+..+.... ..++|+++|+||+
T Consensus 42 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~ 121 (175)
T 2nzj_A 42 ERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121 (175)
T ss_dssp EEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred EEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence 34667889899999999999988 56778889999999999999999999999999998887653 2478999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+.+.+.+..++.+.++..++++++++||++|.|++++|+++.+.+....
T Consensus 122 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 99887788888999999999999999999999999999999999987654
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.94 E-value=3.9e-25 Score=160.41 Aligned_cols=135 Identities=38% Similarity=0.706 Sum_probs=121.3
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+......+.|+++
T Consensus 39 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (203)
T 1zbd_A 39 STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118 (203)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEE
T ss_pred CccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4555 2345667888999999999999999999999999999999999999999999999999998877655799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+.+.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp EEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred EEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999887788889999999999999999999999999999999999998887655
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=2.8e-25 Score=158.78 Aligned_cols=136 Identities=45% Similarity=0.701 Sum_probs=121.6
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.|||++|++.|...+..+++++|++|+|||+++++++..+..|+..+......++|+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 120 (186)
T 2bme_A 41 HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120 (186)
T ss_dssp CCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4555 3345667888899999999999999999999999999999999999999999999999988776656899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++++.+.+...+..
T Consensus 121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179 (186)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcC
Confidence 99999998777888899999999999999999999999999999999999998775554
No 17
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=161.20 Aligned_cols=131 Identities=46% Similarity=0.728 Sum_probs=118.9
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.||||+|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 64 SRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred EEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 34566788889999999999999999999999999999999999999999999999999877665689999999999998
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
..+.+...++..++...+++++++||+++.|++++|+++++.+.....+..
T Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 777888889999999999999999999999999999999999988775554
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.94 E-value=4.7e-25 Score=158.40 Aligned_cols=132 Identities=41% Similarity=0.728 Sum_probs=118.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.|||++|++.|...+..+++.+|++|+|||+++.++++.+..|+..+......+.|+++
T Consensus 53 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 132 (189)
T 2gf9_A 53 STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132 (189)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4555 2345567888999999999999999999999999999999999999999999999999998877655799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++.+.+.+.+
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999877788888999999999999999999999999999999999988764
No 19
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=4.3e-25 Score=157.91 Aligned_cols=128 Identities=34% Similarity=0.557 Sum_probs=112.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLK 88 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~ 88 (174)
..+.+++..+.+.||||+|++.|..++..++..+|++++|||+++.+++..+..|+..+..... .+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 3556789999999999999999999999999999999999999999999999999998877543 579999999999997
Q ss_pred CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 89 HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
+ +.+..++.+.++..++++++++||+++.|++++|+++.+.+.......
T Consensus 123 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM 171 (189)
T ss_dssp S-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred c-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 5 567788999999999999999999999999999999999998776544
No 20
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.94 E-value=5.3e-25 Score=156.03 Aligned_cols=130 Identities=48% Similarity=0.826 Sum_probs=116.6
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+.||||+|++.+...+..+++++|++++|||+++.++++.+..|+..+......+.|+++
T Consensus 46 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 125 (179)
T 1z0f_A 46 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125 (179)
T ss_dssp TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4555 3445678888999999999999999999999999999999999999999999999999998877656899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++++.+.+
T Consensus 126 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 126 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999998777888899999999999999999999999999999999988753
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=8.4e-26 Score=162.70 Aligned_cols=127 Identities=42% Similarity=0.721 Sum_probs=116.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++++++.+..|+..+......++|+++|+||+|+.+
T Consensus 63 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 63 KTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp EEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 35566777889999999999999999999999999999999999999999999999999887666899999999999988
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
.+.+..++.+.++..++++++++||+++.|++++|+++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 78889999999999999999999999999999999999999987653
No 22
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=4.4e-26 Score=166.59 Aligned_cols=131 Identities=29% Similarity=0.546 Sum_probs=112.4
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++++++.+. .|+..+....+ ++|+++
T Consensus 40 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 118 (212)
T 2j0v_A 40 PTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVL 118 (212)
T ss_dssp CSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEE
T ss_pred CccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5666 3445667888999999999999999999999999999999999999999999996 89999877654 799999
Q ss_pred EEeCCCCCCccC--------CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRA--------VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+. +..+++.+++..++. +++++||+++.|++++|+++++.+....
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp EEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred EEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 999999976443 478889999999996 9999999999999999999999887644
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=9.3e-25 Score=155.79 Aligned_cols=130 Identities=31% Similarity=0.527 Sum_probs=116.4
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++|+.+..|+..+.... ..++|+++
T Consensus 49 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 128 (183)
T 3kkq_A 49 PTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128 (183)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE
T ss_pred CCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 4444 34466789999999999999999999999999999999999999999999999999999886543 35789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSAL-EAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..++++.++..++++++++||+ ++.|++++|+++.+.+.+
T Consensus 129 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999998878899999999999999999999999 999999999999988764
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=7.6e-25 Score=155.74 Aligned_cols=130 Identities=44% Similarity=0.761 Sum_probs=116.4
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.|||++|++.|...+..+++++|++|+|||+++..+++.+..|+..+......++|+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~ 122 (181)
T 2efe_B 43 STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122 (181)
T ss_dssp CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4555 3445668888999999999999999999999999999999999999999999999999998877656899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++.+.+..
T Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999998777888899999999999999999999999999999999887654
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=8.9e-25 Score=157.35 Aligned_cols=133 Identities=57% Similarity=0.919 Sum_probs=119.3
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|||||++++.++..+..|+..+......++|+++
T Consensus 56 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piil 135 (193)
T 2oil_A 56 TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135 (193)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 5555 3345667888999999999999999999999999999999999999999999999999998776556799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|+++++.+.+...
T Consensus 136 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998777788899999999999999999999999999999999999987653
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=2.3e-25 Score=158.68 Aligned_cols=132 Identities=31% Similarity=0.427 Sum_probs=116.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++++.+..|+..+..... .++|+++
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 116 (181)
T 3t5g_A 37 PTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116 (181)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEE
T ss_pred CCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 5555 345667899999999999999999999999999999999999999999999999999998866543 4799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+....
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred EEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999888889999999999999999999999999999999999999887643
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.9e-25 Score=155.82 Aligned_cols=124 Identities=45% Similarity=0.788 Sum_probs=105.8
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.|||++|++.|...+..+++++|++++|||++++++++.+..|+..+......++|+++|+||+|+.+.
T Consensus 52 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 52 VLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred EEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 45678889999999999999999999999999999999999999999999999999988776567999999999999887
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+.+..++.+.++..++++++++||+++.|++++|+++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999887643
No 28
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=7.4e-25 Score=158.69 Aligned_cols=125 Identities=23% Similarity=0.307 Sum_probs=112.6
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTD 86 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~D 86 (174)
.+.+.+++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++++|..+..|+..+..... .++|+++|+||+|
T Consensus 62 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 62 ERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp EEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 44567899999999999999998765 888899999999999999999999999999998876543 4799999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+..
T Consensus 142 l~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 142 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred ccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 98777888999999999999999999999999999999999988754
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=7.8e-25 Score=155.41 Aligned_cols=132 Identities=26% Similarity=0.494 Sum_probs=117.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++.+++..+..|+..+... ...++|+++
T Consensus 40 ~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 119 (181)
T 2fn4_A 40 PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119 (181)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEE
T ss_pred CCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4555 3345678888899999999999999999999999999999999999999999999999888443 335799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.+..
T Consensus 120 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999887788889999999999999999999999999999999999987654
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=2.2e-25 Score=156.86 Aligned_cols=129 Identities=38% Similarity=0.688 Sum_probs=109.2
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+||++|++++...+..+++++|++++|||+++.++++.+..|+..+......++|+++
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 116 (170)
T 1z08_A 37 TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 116 (170)
T ss_dssp CCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEE
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 5555 2345677888999999999999999999999999999999999999999999999999988776545799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999999877788889999999999999999999999999999999998875
No 31
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.7e-25 Score=159.06 Aligned_cols=130 Identities=38% Similarity=0.757 Sum_probs=116.1
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|++.|...+..+++++|++|+|||+++.++++.+..|+..+......++|+++
T Consensus 57 ~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (192)
T 2il1_A 57 STVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136 (192)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4555 3345667888899999999999999999999999999999999999999999999999988877666899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..++++.++..+ +++++++||+++.|++++|+++.+.+.+
T Consensus 137 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999877788888999999885 7899999999999999999999998865
No 32
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=2.1e-25 Score=163.77 Aligned_cols=131 Identities=23% Similarity=0.438 Sum_probs=114.1
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN-VSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|.. +..|+..+..... ++|++|
T Consensus 58 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piil 136 (214)
T 3q3j_B 58 PTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLL 136 (214)
T ss_dssp CCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEE
T ss_pred CeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5666 33455678888999999999999999999999999999999999999999999 6899999987764 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCC-HHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAIN-VEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+. +.+..+++..++..+++ +++++||+++.| ++++|+++++.+....
T Consensus 137 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 9999999753 67889999999999999 999999999998 9999999999887654
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=9.9e-25 Score=153.27 Aligned_cols=128 Identities=44% Similarity=0.747 Sum_probs=114.8
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+.|||++|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 116 (170)
T 1r2q_A 37 STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 116 (170)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4555 2345677888999999999999999999999999999999999999999999999999998877656899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999987777888899999999999999999999999999999998754
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-24 Score=157.71 Aligned_cols=129 Identities=41% Similarity=0.774 Sum_probs=116.0
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
..+.+++..+.+.||||+|++.|...+..+++.+|++|+|||+++..++..+..|+..+......++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~- 138 (213)
T 3cph_A 60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 138 (213)
T ss_dssp EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-
Confidence 4567788889999999999999999999999999999999999999999999999999887765579999999999994
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
.+.+..++.+.++..++++++++||+++.|++++|+++.+.+.+......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 188 (213)
T 3cph_A 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188 (213)
T ss_dssp SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 46677888999999999999999999999999999999999988765443
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=1.6e-24 Score=155.45 Aligned_cols=127 Identities=18% Similarity=0.350 Sum_probs=111.7
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||.+ ..+.+.+++..+.+.||||+|++.|. +++++|++++|||++++++|+.+..|+..+..... .++|+++|
T Consensus 51 ~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 125 (184)
T 3ihw_A 51 PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125 (184)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEE
T ss_pred CCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4544 44577889999999999999999887 78899999999999999999999999999877643 47899999
Q ss_pred EeCCCCC--CccCCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLK--HLRAVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 82 ~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+||+|+. ..+.+..+++++++..++ ++++++||+++.|++++|+++++.+.+..
T Consensus 126 ~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999994 456788999999999997 89999999999999999999999987653
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.93 E-value=2.3e-24 Score=153.75 Aligned_cols=133 Identities=31% Similarity=0.510 Sum_probs=118.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus 49 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 128 (187)
T 2a9k_A 49 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128 (187)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred CccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4444 334567888889999999999999999999999999999999999999999999999998877654 4799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.....
T Consensus 129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999998777788899999999999999999999999999999999999887653
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=1.3e-24 Score=152.32 Aligned_cols=130 Identities=31% Similarity=0.535 Sum_probs=113.1
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||.+ ....+.+++..+.+.|||++|++++..++..+++.+|++++|||+++.+++..+..|+..+..... .++|+++
T Consensus 35 ~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 114 (168)
T 1u8z_A 35 PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114 (168)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred CCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 4555 334566889999999999999999999999999999999999999999999999999998877654 4799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+++..++++.++...+++++++||+++.|++++|+++.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 99999998777888899999999999999999999999999999999988753
No 38
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-24 Score=152.36 Aligned_cols=128 Identities=44% Similarity=0.730 Sum_probs=114.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.+||++|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 113 (170)
T 1ek0_A 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113 (170)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 5666 2446678889999999999999999999999999999999999999999999999999998877656899999
Q ss_pred EEeCCCCCCc---cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL---RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||+|+.+. +.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus 114 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999754 67888899999999999999999999999999999988754
No 39
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=158.33 Aligned_cols=128 Identities=29% Similarity=0.423 Sum_probs=110.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVI 78 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~pi 78 (174)
||+| ..+.+.+++..+.+.||||+|++.|..+ ..+++++|++++|||++++++|+.+..|+..+..... .++|+
T Consensus 52 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi 130 (187)
T 3c5c_A 52 PNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA 130 (187)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred CCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE
Confidence 5666 3346678999999999999999998875 6799999999999999999999999999999876531 47999
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEec-cCCCCHHHHHHHHHHHHH
Q 043745 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSA-LEAINVEKAFQTILSEIY 132 (174)
Q Consensus 79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~v~~~l~~~i~ 132 (174)
++|+||+|+.+.+.+..+++++++..++++++++|| +++.|++++|+++++.+.
T Consensus 131 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 131 LLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred EEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 999999999877888899999999999999999999 899999999999998875
No 40
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=156.85 Aligned_cols=132 Identities=30% Similarity=0.502 Sum_probs=116.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|+++|..++..+++++|++|+|||+++++++..+. .|+..+..... ++|+++
T Consensus 51 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il 129 (201)
T 2q3h_A 51 PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIIL 129 (201)
T ss_dssp CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEE
T ss_pred CcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5555 3345677888999999999999999999999999999999999999999999996 79998877654 799999
Q ss_pred EEeCCCCCC------------ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 81 IGNKTDLKH------------LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
|+||+|+.+ .+.+..+++..++..++. +++++||+++.|++++|+++++.+.....
T Consensus 130 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999975 256788899999999997 89999999999999999999999887653
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=2.9e-24 Score=151.02 Aligned_cols=128 Identities=43% Similarity=0.733 Sum_probs=115.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||++++.++..+..|+..+........|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iil 116 (170)
T 1z0j_A 37 PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 116 (170)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEE
T ss_pred CceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 5555 2345677888899999999999999999999999999999999999999999999999999877666899999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||+|+.+.+++..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus 117 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999987778888999999999999999999999999999999998765
No 42
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=2.7e-24 Score=152.71 Aligned_cols=130 Identities=19% Similarity=0.320 Sum_probs=110.0
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---DSNIVI 78 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~pi 78 (174)
||+| ..+.+.+++..+.++||||+|+++ ..+++++|++|+|||++++++|+.+..|+..+.... ..++|+
T Consensus 37 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi 111 (178)
T 2iwr_A 37 KTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111 (178)
T ss_dssp SCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred CCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 6666 455677899999999999999986 467889999999999999999999999766654432 247999
Q ss_pred EEEEeCCCCC--CccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 79 MMIGNKTDLK--HLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 79 ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
++|+||+|+. ..+.+..++++.++..+ +++++++||+++.|++++|+++++.+.+.....
T Consensus 112 ilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 112 ALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp EEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999994 45678889999999887 689999999999999999999999998875443
No 43
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=1e-24 Score=153.36 Aligned_cols=124 Identities=42% Similarity=0.793 Sum_probs=112.2
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+++..+.+.|||++|++.+...+..+++++|++++|||+++.+++..+..|+..+......+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~- 121 (170)
T 1g16_A 43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 121 (170)
T ss_dssp EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-
T ss_pred EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-
Confidence 4556678889999999999999999999999999999999999999999999999999887765679999999999994
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+.+..++.+.++..++++++++||+++.|++++|+++.+.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999999999988754
No 44
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=8.7e-25 Score=157.58 Aligned_cols=130 Identities=43% Similarity=0.726 Sum_probs=115.9
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|+++|...+..+++.+|++|+|||+++.++++.+..|+..+......++|+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piii 133 (192)
T 2fg5_A 54 PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133 (192)
T ss_dssp CCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 5666 2345567888899999999999999999999999999999999999999999999999999877656799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..+++++++..++++++++||+++.|++++|+++.+.+.+
T Consensus 134 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 99999998767788899999999999999999999999999999999887643
No 45
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=2.5e-24 Score=155.19 Aligned_cols=129 Identities=24% Similarity=0.481 Sum_probs=114.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||+| ....+.+++..+.+.||||+|++.|..++..+++++|++++|||+++++++..+ ..|+..+..... ++|+++
T Consensus 54 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il 132 (194)
T 3reg_A 54 PTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVL 132 (194)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEE
T ss_pred CeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5555 334566889999999999999999999999999999999999999999999997 789888876653 799999
Q ss_pred EEeCCCCCCc--cCCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL--RAVATEDAQSYAEREGLS-FIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+. +.+..+++++++..+++. ++++||+++.|++++|+++++.+..
T Consensus 133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp EEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 9999999753 678889999999999988 9999999999999999999998764
No 46
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.7e-24 Score=158.87 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=111.0
Q ss_pred eeEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD 86 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 86 (174)
.+.+.+++..+.+.+|||+|++. +..+...+++.+|++|+|||+++.++|+.+..|+..+.... ..++|++||+||+|
T Consensus 77 ~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D 156 (211)
T 2g3y_A 77 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156 (211)
T ss_dssp EEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred EEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence 45667899999999999999987 56677888899999999999999999999999988876542 24799999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
|.+.+.+..++++.++..++++++++||++|.|++++|+++++.+...
T Consensus 157 L~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 987778888889999999999999999999999999999999988654
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=9.7e-25 Score=158.40 Aligned_cols=134 Identities=26% Similarity=0.457 Sum_probs=105.8
Q ss_pred CCcc---ceeEEEECCe--EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CC
Q 043745 4 PRLG---KLCDFQVEGR--TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SN 75 (174)
Q Consensus 4 pt~g---~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~ 75 (174)
||+| ..+.+.+++. .+.+.||||+|++.|...+..+++++|++|+|||++++++++.+..|+..+..... .+
T Consensus 53 ~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 132 (208)
T 2yc2_C 53 MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132 (208)
T ss_dssp --------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC
T ss_pred CccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC
Confidence 4555 4445667776 88999999999999999999999999999999999999999999999999987765 57
Q ss_pred CeEEEEEeCCCCCC-ccCCCHHHHHHHHHHhCCcEEEEeccC-CCCHHHHHHHHHHHHHHHHhh
Q 043745 76 IVIMMIGNKTDLKH-LRAVATEDAQSYAEREGLSFIETSALE-AINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 76 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~v~~~l~~~i~~~~~~ 137 (174)
+|+++|+||+|+.+ .+.+..++++.++..++++++++||++ +.|++++|+++.+.+.+...+
T Consensus 133 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp CEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 99999999999987 678888999999999999999999999 999999999999988876543
No 48
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.6e-24 Score=155.01 Aligned_cols=128 Identities=28% Similarity=0.508 Sum_probs=113.7
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.|||++|+++|..++..+++++|++|+|||++++++|..+. .|+..+..... ++|+++
T Consensus 49 ~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 127 (194)
T 2atx_A 49 PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLL 127 (194)
T ss_dssp CSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred CcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5666 3446677888899999999999999999999999999999999999999999997 89998887654 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+.+. +.+..+++..++..++. +++++||+++.|++++|+++++.++
T Consensus 128 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999753 46788999999999997 8999999999999999999998875
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.93 E-value=4.5e-24 Score=153.03 Aligned_cols=121 Identities=40% Similarity=0.725 Sum_probs=111.7
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.||||+|++.|...+..+++++|++|+|||+++..++..+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 78999999999999999999999999999999999999999999999999877654 57999999999999877788889
Q ss_pred HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhc
Q 043745 97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK 138 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~ 138 (174)
++++++..++++++++||+++.|++++|+++.+.+.+...+.
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998876544
No 50
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.93 E-value=1.3e-24 Score=154.06 Aligned_cols=125 Identities=31% Similarity=0.525 Sum_probs=109.6
Q ss_pred eeEEEECC-eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCe-EEEEEeC
Q 043745 9 LCDFQVEG-RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIV-IMMIGNK 84 (174)
Q Consensus 9 ~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iilv~nK 84 (174)
.+.+.+++ ..+.+.||||+|++.|...+..+++++|++++|||++++++++.+..|+..+..... ...| +++|+||
T Consensus 45 ~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 45 LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp EEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 34566665 678999999999999999999999999999999999999999999999988876432 1344 8999999
Q ss_pred CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+
T Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred cccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9998777888899999999999999999999999999999999988754
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.93 E-value=9.9e-25 Score=159.92 Aligned_cols=122 Identities=41% Similarity=0.709 Sum_probs=111.0
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.+.||||+|++.|...+..+++++|++|||||+++.+++..+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 78899999999999999999999999999999999999999999999888765543 57999999999999877788889
Q ss_pred HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcC
Q 043745 97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKS 139 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~ 139 (174)
++++++..++++++++||+++.|++++|+++.+.+.+......
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999988765543
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=157.54 Aligned_cols=124 Identities=36% Similarity=0.613 Sum_probs=110.4
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.+.+++..+.+.||||+|++.|..++..+++.+|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 67 MKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 34667888899999999999999999999999999999999999999999999999998877665579999999999996
Q ss_pred ------CccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 89 ------HLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
..+.+..++++.++...+++++++||+++.|++++|+++++.+.
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999998774
No 53
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.7e-25 Score=158.35 Aligned_cols=128 Identities=27% Similarity=0.351 Sum_probs=110.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIM 79 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~pii 79 (174)
||++ ..+.+.+++..+.+.||||+|+++|..++..++..+|++++|||++++++++.+..|+..+..... .++|++
T Consensus 39 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pii 118 (199)
T 2gf0_A 39 PTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118 (199)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEE
T ss_pred CccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4555 233456788889999999999999999999999999999999999999999999888877766442 368999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+|+||+|+.+ +.+..++...++..++++++++||+++.|++++|+++++.+.
T Consensus 119 lv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 119 LVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp EEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred EEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 9999999976 567788889999999999999999999999999999988654
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=2.4e-24 Score=151.03 Aligned_cols=128 Identities=28% Similarity=0.488 Sum_probs=112.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|++.|..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++
T Consensus 34 ~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1c1y_A 34 PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113 (167)
T ss_dssp CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEE
T ss_pred CCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEE
Confidence 4444 23345678888999999999999999999999999999999999999999999999998887653 25799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAERE-GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||+|+.+.+.+..++++.++..+ +++++++||+++.|++++|+++.+.+
T Consensus 114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999887788889999999988 79999999999999999999998876
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=2e-24 Score=151.56 Aligned_cols=129 Identities=33% Similarity=0.571 Sum_probs=115.6
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||+++.++++.+..|+..+.... .+.|+++
T Consensus 36 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piil 114 (168)
T 1z2a_A 36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTAL 114 (168)
T ss_dssp CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEE
T ss_pred CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 5555 34466778889999999999999999999999999999999999999999999999999887665 4789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++.+.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 115 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999998777788899999999999999999999999999999999988753
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=2.3e-24 Score=152.70 Aligned_cols=129 Identities=37% Similarity=0.689 Sum_probs=115.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||+++++++..+..|+..+......++|+++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 124 (179)
T 2y8e_A 45 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124 (179)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEE
T ss_pred CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 5555 3445668888899999999999999999999999999999999999999999999999998776556799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.+.
T Consensus 125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred EEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999877788889999999999999999999999999999999987653
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=5.6e-24 Score=152.93 Aligned_cols=130 Identities=41% Similarity=0.736 Sum_probs=114.8
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM 79 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii 79 (174)
||+| ..+.+.+++..+.+.||||+|++.|..++..+++++|++|||||+++++++..+..|+..+..... .++|++
T Consensus 46 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 125 (195)
T 1x3s_A 46 ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125 (195)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE
T ss_pred CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 4555 234567888999999999999999999999999999999999999999999999999999876543 479999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+|+||+|+.+ +.+..++...++...+++++++||+++.|++++|+++.+.+.+.
T Consensus 126 lv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 126 LVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp EEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999954 56778889999999999999999999999999999999988753
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=3.7e-24 Score=149.78 Aligned_cols=124 Identities=25% Similarity=0.474 Sum_probs=112.6
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL 87 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 87 (174)
.+.+.+++..+.+.|||++|++.|..++..+++++|++++|||+++.++++.+..|+..+..... .+.|+++|+||+|+
T Consensus 41 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 41 RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 44667888899999999999999999999999999999999999999999999999988876543 57999999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+.+++..++.+.++..++++++++||+++.|++++|+++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 877788889999999999999999999999999999999998764
No 59
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=4.7e-24 Score=153.16 Aligned_cols=129 Identities=34% Similarity=0.653 Sum_probs=112.5
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhh-hhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYR-AITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVI 78 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 78 (174)
||+| ..+.+.+++..+.+.||||+|+++|. .++..+++++|++|+|||+++.+++..+..|+..+.... ..+.|+
T Consensus 51 ~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 130 (189)
T 1z06_A 51 ATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130 (189)
T ss_dssp CCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE
T ss_pred CCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 4555 34456788888999999999999998 899999999999999999999999999999999987765 357999
Q ss_pred EEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCC---CCHHHHHHHHHHHHH
Q 043745 79 MMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEA---INVEKAFQTILSEIY 132 (174)
Q Consensus 79 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~v~~~l~~~i~ 132 (174)
++|+||+|+.+.+++..++.+.++...+++++++||+++ .|++++|+++++.+.
T Consensus 131 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 999999999877788889999999999999999999999 999999999988764
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=8.1e-25 Score=158.81 Aligned_cols=132 Identities=27% Similarity=0.435 Sum_probs=111.6
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||+++.++++.+..|+..+..... .++|+++
T Consensus 55 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 134 (201)
T 3oes_A 55 PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134 (201)
T ss_dssp CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEE
T ss_pred CccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4444 233445677788999999999999999999999999999999999999999999999999876533 4789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+++++.+.+..
T Consensus 135 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred EEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999887889999999999999999999999999999999999999887654
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=7.7e-24 Score=152.96 Aligned_cols=131 Identities=31% Similarity=0.435 Sum_probs=115.9
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|++. ...+..+++.+|++++|||++++++++.+..|+..+..... .++|+++
T Consensus 59 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 137 (196)
T 2atv_A 59 PTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137 (196)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEE
T ss_pred CCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 4555 334567889999999999999998 78899999999999999999999999999999988876543 5799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCC-CHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAI-NVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+.+.+..++++.++..++++++++||+++. |++++|+++++.+.+..
T Consensus 138 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 99999998877888999999999999999999999999 99999999999987653
No 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=2.4e-24 Score=154.19 Aligned_cols=129 Identities=24% Similarity=0.518 Sum_probs=112.8
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++++|+.+ ..|+..+..... +.|+++
T Consensus 38 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piil 116 (184)
T 1m7b_A 38 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLL 116 (184)
T ss_dssp CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEE
T ss_pred CccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEE
Confidence 5666 334566788899999999999999999999999999999999999999999998 789988877654 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhC-CcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREG-LSFIETSAL-EAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+. +.+..++++.++..++ ++++++||+ ++.|++++|+.+++.+++
T Consensus 117 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999742 5678889999999988 799999999 689999999999988763
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=6.8e-25 Score=157.82 Aligned_cols=122 Identities=22% Similarity=0.304 Sum_probs=107.8
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT------KPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+++..+.++||||+|+++|..++..+++++|++|||||++ +.++|..+..|+..+... ..++|+++|+||+|
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~NK~D 146 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVNKRD 146 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEECTT
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEEchh
Confidence 45677889999999999999999999999999999999999 567888888898887432 25799999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 87 LKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
+.+ .+..+++++++...++ +++++||+++.|++++|+++++.+.+...+
T Consensus 147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 976 3778899999999998 999999999999999999999999887643
No 64
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=1.8e-23 Score=148.10 Aligned_cols=129 Identities=37% Similarity=0.667 Sum_probs=112.1
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCC
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNI 76 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~ 76 (174)
||+| ..+.+.+++..+.+.|||++|++.|...+..+++++|++++|||+++.+++..+..|+..+..... .++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (177)
T 1wms_A 38 HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117 (177)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTS
T ss_pred CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCC
Confidence 4555 234566788889999999999999999999999999999999999999999999999998876543 578
Q ss_pred eEEEEEeCCCCCCccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 77 VIMMIGNKTDLKHLRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 77 piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+++|+||+|+. .+.+..++++.++. ..+++++++||+++.|++++|+++++.+.+
T Consensus 118 p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 118 PFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999997 46677888889888 557899999999999999999999998764
No 65
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=2.1e-26 Score=166.92 Aligned_cols=123 Identities=48% Similarity=0.832 Sum_probs=102.2
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++++.+..|+..+......++|+++|+||+|+.+.
T Consensus 74 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 74 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp EEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred EEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 55678888999999999999999999999999999999999999999999999999987766668999999999999877
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+..++.+.++..++++++++||+++.|++++|+++++.+.+
T Consensus 154 ~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred ccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999877644
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.92 E-value=1.5e-24 Score=159.10 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=107.7
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
+..+.+.||||+|++.+..++..++.++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 44488999999999999999999999999999999999999999999999998877666799999999999988778888
Q ss_pred HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 96 EDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
++...++...+++++++||+++.|++++|+++.+.+......
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999988765433
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=3.5e-24 Score=156.37 Aligned_cols=129 Identities=24% Similarity=0.524 Sum_probs=112.7
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+ ..|+..+..... +.|+++
T Consensus 59 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piil 137 (205)
T 1gwn_A 59 PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLL 137 (205)
T ss_dssp CCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEE
T ss_pred CccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEE
Confidence 5665 334556788889999999999999999999999999999999999999999998 789998877654 799999
Q ss_pred EEeCCCCCC------------ccCCCHHHHHHHHHHhC-CcEEEEecc-CCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKH------------LRAVATEDAQSYAEREG-LSFIETSAL-EAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+ .+.+..++++.++..++ ++++++||+ ++.|++++|+.+++.++.
T Consensus 138 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999974 25678889999999988 799999999 689999999999998874
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.8e-23 Score=151.70 Aligned_cols=129 Identities=27% Similarity=0.553 Sum_probs=113.3
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||++ ....+.+++..+.+.||||+|+++|..++..+++++|++++|||+++++++..+ ..|+..+..... +.|+++
T Consensus 56 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 134 (201)
T 2gco_A 56 PTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIIL 134 (201)
T ss_dssp CSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred CcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 5555 334567889999999999999999999999999999999999999999999999 688888877653 789999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+. +.+..+++..++..++. +++++||+++.|++++|+++.+.+++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999764 45778889999999997 89999999999999999999988763
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.92 E-value=1.3e-23 Score=149.87 Aligned_cols=128 Identities=27% Similarity=0.553 Sum_probs=112.5
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|+++|..++..+++++|++++|||+++++++..+. .|+..+..... +.|+++
T Consensus 36 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 114 (186)
T 1mh1_A 36 PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIIL 114 (186)
T ss_dssp CCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEE
T ss_pred CcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 4555 3345678899999999999999999999999999999999999999999999997 79888877654 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+.+. +.+..+++..++..++. +++++||+++.|++++|+++.+.+.
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 9999999653 46778889999999997 9999999999999999999998875
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=7.1e-24 Score=155.45 Aligned_cols=130 Identities=32% Similarity=0.563 Sum_probs=99.5
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|++.|..++..+++++|++++|||++++++|+.+. .|+..+..... ++|+++
T Consensus 65 ~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 143 (214)
T 2j1l_A 65 PTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIV 143 (214)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEE
T ss_pred CccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 4555 3445678899999999999999999999999999999999999999999999996 79988877653 789999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
|+||+|+... +.+..++++.++..++. +++++||+++.|++++|+++++.+.+.
T Consensus 144 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999764 26778889999999997 999999999999999999999998754
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=4.8e-23 Score=148.60 Aligned_cols=114 Identities=40% Similarity=0.718 Sum_probs=104.7
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.||||+|++.|...+..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+| ...+.+..+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHH
Confidence 889999999999999999999999999999999999999999999999987765 389999999999 44467888999
Q ss_pred HHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 99 QSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 99 ~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+.++...+++++++||+++.|++++|+++.+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988764
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=5.2e-23 Score=147.61 Aligned_cols=126 Identities=33% Similarity=0.542 Sum_probs=102.8
Q ss_pred eeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDL 87 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl 87 (174)
.+.+.+++..+.+.|||++|+++|..++..+++.+|++++|||+++..++..+..|+..+..... .++|+++|+||+|+
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 59 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 34567788899999999999999999999999999999999999999999999999988876543 47899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
.+ +.+..+++++++..++++++++||+++.|++++|+++.+.+.+..
T Consensus 139 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 139 PT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp SC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred Cc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 76 567788999999999999999999999999999999999887653
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=8.2e-23 Score=142.59 Aligned_cols=128 Identities=34% Similarity=0.570 Sum_probs=113.4
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piil 80 (174)
||++ ..+.+.+++..+.+.+||++|+++|...+..++..+|++++|||+++..++..+..|+..+..... .+.|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 113 (166)
T 2ce2_X 34 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113 (166)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred CccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 4444 344667889899999999999999999999999999999999999999999999999998876653 4799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
|+||+|+.+ +.+..++.++++..++++++++||+++.|++++|+++.+.+.
T Consensus 114 v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 114 VGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp EEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999976 567788899999999999999999999999999999998874
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=4.3e-23 Score=149.01 Aligned_cols=127 Identities=25% Similarity=0.333 Sum_probs=109.1
Q ss_pred eeEEEECCeEEEEEEEeCCCchh-hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745 9 LCDFQVEGRTIKAQIWDTAGQER-YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD 86 (174)
Q Consensus 9 ~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 86 (174)
.+.+.+++..+.+.+|||+|++. +..++..+++.+|++++|||+++.++|+.+..|+..+.... ..++|+++|+||+|
T Consensus 46 ~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 46 ERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence 34567899999999999999876 56678888999999999999999999999999988876643 24789999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+...+.+..++++.++..++++++++||++|.|++++|+++++.+....
T Consensus 126 l~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 9876778888888999999999999999999999999999999886543
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=1.9e-23 Score=148.38 Aligned_cols=125 Identities=37% Similarity=0.628 Sum_probs=98.7
Q ss_pred EEEEC-CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCC
Q 043745 11 DFQVE-GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMMIGNKT 85 (174)
Q Consensus 11 ~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~ 85 (174)
.+.++ +..+.+.+||++|++.|...+..+++++|++|+|||+++.++++.+..|+..+..... .++|+++|+||+
T Consensus 49 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 49 EVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp EECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred EEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 44455 5568899999999999999999999999999999999999999999999998876543 578999999999
Q ss_pred CCCC-ccCCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 86 DLKH-LRAVATEDAQSYAE-REGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 86 Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+.. .+.+..++++.++. ..+++++++||+++.|++++|+++.+.+.+..
T Consensus 129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9953 35677888888888 45689999999999999999999999987653
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.2e-23 Score=146.56 Aligned_cols=128 Identities=26% Similarity=0.339 Sum_probs=111.2
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIM 79 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~pii 79 (174)
||++ ..+.+.+++..+.+.||||+|+++|..++..+++.+|++++|||++++++++.+..|+..+..... .+.|++
T Consensus 34 ~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii 113 (172)
T 2erx_A 34 PTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113 (172)
T ss_dssp CCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE
T ss_pred CCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE
Confidence 4444 233456788889999999999999999999999999999999999999999999999888766542 468999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+|+||+|+.+.+.+...+.+.++...+++++++||+++.|++++|+++.+.+
T Consensus 114 ~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 114 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999987778888889999999999999999999999999999998754
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.91 E-value=3e-24 Score=152.76 Aligned_cols=120 Identities=31% Similarity=0.574 Sum_probs=100.0
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
+.+++..+.+.||||+|+++|...+..+++++|++++|||++++++++.+. .|+..+..... ++|+++|+||+|+.+.
T Consensus 49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 345677788899999999999999999999999999999999999999997 79998877654 7999999999999764
Q ss_pred cC----------CCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 91 RA----------VATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 91 ~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+. +..+++.+++..++. +++++||+++.|++++|+++++.++
T Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 43 477888999999996 9999999999999999999988764
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=7.2e-23 Score=149.19 Aligned_cols=129 Identities=29% Similarity=0.554 Sum_probs=110.5
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 80 (174)
||++ ....+.+++..+.+.||||+|+++|...+..+++++|++|+|||+++.+++..+ ..|+..+..... ++|+++
T Consensus 56 ~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piil 134 (207)
T 2fv8_A 56 PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIIL 134 (207)
T ss_dssp ---CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEE
T ss_pred CcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 4555 223456788889999999999999999999999999999999999999999999 688888877653 789999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+. +.+..+++..++...+. +++++||+++.|++++|+++.+.++.
T Consensus 135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred EEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999654 45778888999999987 89999999999999999999998764
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=2e-23 Score=153.48 Aligned_cols=129 Identities=30% Similarity=0.543 Sum_probs=111.4
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||.| ....+.+++..+.+.||||+|++.|..++..+++++|++++|||+++..++..+..|+..+..... ++|+++
T Consensus 46 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~il 124 (221)
T 3gj0_A 46 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 124 (221)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEE
Confidence 4555 333556788899999999999999999999999999999999999999999999999999987754 799999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
|+||+|+.+... ..+...++...+++++++||+++.|++++|+++.+.+....
T Consensus 125 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 125 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp EEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred EEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 999999976433 23666788888999999999999999999999999886643
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.90 E-value=2.5e-23 Score=151.47 Aligned_cols=127 Identities=27% Similarity=0.547 Sum_probs=109.1
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ....+.+++..+.+.||||+|+++|...+..+++++|++++|||+++++++..+. .|+..+.... .+.|+++
T Consensus 61 ~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piil 139 (204)
T 4gzl_A 61 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIIL 139 (204)
T ss_dssp CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEE
T ss_pred CeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEE
Confidence 4444 3335567888899999999999999999999999999999999999999999996 8988887765 4799999
Q ss_pred EEeCCCCCCcc------------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLR------------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+||+|+.+.+ .+..+++..++..++. +++++||+++.|++++|+++.+.+
T Consensus 140 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999997543 3778889999999986 599999999999999999998754
No 81
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=7.7e-22 Score=142.90 Aligned_cols=140 Identities=68% Similarity=1.095 Sum_probs=121.2
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ....+.+++..+.+.+||++|++.|...+..+++.++++++|||+++..++..+..|+..+........|+++
T Consensus 36 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~ 115 (199)
T 2f9l_A 36 STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 115 (199)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 5555 3456788999999999999999999999999999999999999999999999998998887665445789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSG 143 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~~~~~~~ 143 (174)
++||.|+.+.+.+..++++.++...++.++++||+++.|++++|+++.+.+.+..........
T Consensus 116 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 178 (199)
T 2f9l_A 116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 178 (199)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCCC--
T ss_pred EEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccCCch
Confidence 999999987777888889999999999999999999999999999999999887655544333
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=2.8e-23 Score=149.83 Aligned_cols=130 Identities=15% Similarity=0.268 Sum_probs=102.6
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--------C
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--------S 74 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--------~ 74 (174)
.||+|... ..+++..+.+.||||+|++.|..++..+++++|++|+|||+++.++|..+..|+..+..... .
T Consensus 48 ~~t~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (199)
T 4bas_A 48 TATVGYNV-ETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGG 126 (199)
T ss_dssp CCCSSEEE-EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred ccccceeE-EEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccC
Confidence 35666222 23445567899999999999999999999999999999999999999999999888765421 2
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHH------HHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQS------YAEREGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
++|+++|+||+|+..... .++... ++...+++++++||+++.|++++|++|++.+.+..
T Consensus 127 ~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp BCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 689999999999976422 222211 11445678999999999999999999999988764
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=9e-23 Score=147.95 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=98.8
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ....+.+++ +.+.+|||+|++.|+.++..+++++|++++|||++++++|..+..|+..+.... ..++|+++|
T Consensus 55 ~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 132 (198)
T 1f6b_A 55 PTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132 (198)
T ss_dssp CCCCCSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred CCCCceeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 5555 334566676 789999999999999999999999999999999999999999999998876542 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHH-----------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAER-----------------EGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+||+|+.+ .+..+++++++.. .+++++++||++|.|++++|+++.+.
T Consensus 133 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 133 GNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999975 5667777777653 23579999999999999999998764
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.89 E-value=1.5e-23 Score=146.72 Aligned_cols=127 Identities=17% Similarity=0.296 Sum_probs=97.0
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIG 82 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~ 82 (174)
||+|.. ...++...+.+.+|||+|++.|..++..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+
T Consensus 30 ~t~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 30 PTIGFN-VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp CCSSCC-EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CcCcee-EEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence 566622 12333445789999999999999999999999999999999999999999999988876532 2478999999
Q ss_pred eCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
||+|+.+. ....+..... ...+++++++||+++.|++++|+++.+.+.+
T Consensus 109 nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 109 NKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp ECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 99999753 2222222211 1234579999999999999999999987654
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=2.3e-22 Score=144.86 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=101.7
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ....+.+++ +.+.+|||+|++.++..+..+++++|++++|||++++++|+.+..|+..+.... ..+.|+++|
T Consensus 53 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (190)
T 1m2o_B 53 PTWHPTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 130 (190)
T ss_dssp CCCSCEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cCCCCCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEE
Confidence 5555 344566676 789999999999999999999999999999999999999999999998876542 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHH------------hCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAER------------EGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+||+|+.+ .+..+++.+++.. .+++++++||+++.|++++|+++.+.
T Consensus 131 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 131 GNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999975 4566666665543 34679999999999999999998754
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.88 E-value=3.5e-23 Score=149.68 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=96.2
Q ss_pred CeEEEEEEEeCCCchhhhhhh---HHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC-
Q 043745 16 GRTIKAQIWDTAGQERYRAIT---SAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH- 89 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~- 89 (174)
+..+.++||||+|+++|.... ..+++++|++|+|||+++. +++..+..|+..+.... .++|+++|+||+|+.+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCch
Confidence 667889999999999988776 8999999999999999997 77778888888775444 3799999999999854
Q ss_pred ------ccCCCHHHHHHHHH----HhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 ------LRAVATEDAQSYAE----REGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.+.+..++.+.++. .++++++++||++ .|++++|+.+++.+
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 24455566777887 6788999999999 99999999998865
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1.6e-22 Score=142.25 Aligned_cols=126 Identities=16% Similarity=0.321 Sum_probs=99.1
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv 81 (174)
||+| ..+.+.++ ...+.+|||+|++.|...+..+++++|++++|||+++++++..+..|+..+..... .+.|+++|
T Consensus 37 ~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 37 PTIGFNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp CCSSEEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred CcCccceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence 5666 33345555 47789999999999999999999999999999999999999999888887755422 47999999
Q ss_pred EeCCCCCCccCCCHHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|+.+... ..+.... +...+++++++||+++.|++++|+++.+.+.+
T Consensus 115 ~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 115 ANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 99999976422 2222221 22345689999999999999999999988753
No 88
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.4e-24 Score=157.81 Aligned_cols=118 Identities=29% Similarity=0.591 Sum_probs=102.2
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 91 (174)
.+++..+.+.||||+|+++|...+..+++++|++++|||+++++++..+. .|+..+..... ++|+++|+||+|+.+..
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 72 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 150 (204)
Confidence 44566678889999999999999999999999999999999999999986 88888776544 78999999999997542
Q ss_pred ------------CCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 92 ------------AVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 92 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.+..+++..++..++. +++++||+++.|++++|+++++.+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 4556777888888887 899999999999999999998765
No 89
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.88 E-value=1.2e-21 Score=151.67 Aligned_cols=129 Identities=25% Similarity=0.508 Sum_probs=113.2
Q ss_pred CCcc--ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG--KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVS-RWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piil 80 (174)
||++ ..+.+.+++..+.+.||||+|++.|...+..+++++|++++|||++++.++..+. .|+..+..... ++|+++
T Consensus 186 ~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~il 264 (332)
T 2wkq_A 186 PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIIL 264 (332)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEE
T ss_pred CcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEE
Confidence 4555 3445677899999999999999999999999999999999999999999999986 78888877654 799999
Q ss_pred EEeCCCCCCc------------cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHL------------RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 81 v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+||+|+.+. +.+..+++..++...+. +++++||+++.|++++|+++.+.++.
T Consensus 265 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 9999999653 56788899999999997 99999999999999999999988753
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.7e-21 Score=139.48 Aligned_cols=126 Identities=17% Similarity=0.320 Sum_probs=97.4
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ..+.+.+++ +.+.||||+|++++...+..+++++|++++|||+++.+++..+..|+..+.... ..+.|+++|
T Consensus 46 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 123 (187)
T 1zj6_A 46 PTIGSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123 (187)
T ss_dssp CCSCSSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred CCCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEE
Confidence 5555 333455555 789999999999999999999999999999999999999999999998886642 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|+.+ ....++..+... ..+++++++||+++.|++++|+++++.+..
T Consensus 124 ~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 124 ANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 99999975 233445444432 235689999999999999999999887643
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=6e-22 Score=141.55 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=94.1
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~ 89 (174)
.+.++ .+.+.+|||+|++.|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+
T Consensus 54 ~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 54 SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 34455 3678999999999999999999999999999999999999999999988775432 24789999999999976
Q ss_pred ccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 90 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
... .++..+.. ...+++++++||++|.|++++|+++.+.+.+
T Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 132 AAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 432 23332221 1224579999999999999999999887654
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=140.10 Aligned_cols=126 Identities=21% Similarity=0.394 Sum_probs=101.7
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIM 79 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~pii 79 (174)
||+| ..+.+.+++ +.+.||||+|++++...+..+++++|++|+|||+++.+++..+..|+..+..... .+.|++
T Consensus 53 ~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii 130 (190)
T 2h57_A 53 PTIGFSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130 (190)
T ss_dssp CCSSEEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE
T ss_pred CccceeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE
Confidence 5666 333445554 7899999999999999999999999999999999999999999999888766532 478999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+|+||+|+.+ ....++..+++. ..+++++++||+++.|++++|+++.+.+.+
T Consensus 131 lv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 131 FFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999975 344556665553 235689999999999999999999887644
No 93
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.88 E-value=2.1e-22 Score=157.97 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=108.7
Q ss_pred CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745 3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH 71 (174)
Q Consensus 3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~ 71 (174)
.||+| ..+.+.++ .+.+++|||+|++.|+..|..||++++++|||||+++ ..++.....|+..+...
T Consensus 178 ~~T~Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 178 VKTTGIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCCCSEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CceeceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 47888 44455565 4889999999999999999999999999999999999 45788888888888664
Q ss_pred cC-CCCeEEEEEeCCCCCCcc---------------CCCHHHHHHHHH-----------HhCCcEEEEeccCCCCHHHHH
Q 043745 72 AD-SNIVIMMIGNKTDLKHLR---------------AVATEDAQSYAE-----------REGLSFIETSALEAINVEKAF 124 (174)
Q Consensus 72 ~~-~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~v~ 124 (174)
.. .++|+||++||+|+.+.+ .++.+++..++. ..++.+++|||+++.|+.++|
T Consensus 256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 32 579999999999995432 367788888886 345789999999999999999
Q ss_pred HHHHHHHHHHH
Q 043745 125 QTILSEIYRII 135 (174)
Q Consensus 125 ~~l~~~i~~~~ 135 (174)
+++.+.+.+..
T Consensus 336 ~~v~~~i~~~~ 346 (353)
T 1cip_A 336 DAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=1e-22 Score=146.86 Aligned_cols=114 Identities=16% Similarity=0.316 Sum_probs=87.1
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCCH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
..+.+.+|||+|+++|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 148 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPV 148 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCH
Confidence 34789999999999999999999999999999999999999999999988876532 247999999999999753 222
Q ss_pred HHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 96 EDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 96 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
++..+.. ...+++++++||+++.|++++|+++++.+.
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 2222211 122457999999999999999999988763
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.87 E-value=4.2e-23 Score=148.27 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=93.3
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAV 93 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~ 93 (174)
+...+.+.|||++|+++|..++..+++++|++|||||+++.+++..+..|+..+.... ..++|+++|+||+|+... .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~ 140 (188)
T 1zd9_A 63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--L 140 (188)
T ss_dssp EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--C
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--C
Confidence 3345789999999999999999999999999999999999999999999988876542 247999999999999753 2
Q ss_pred CHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 94 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..++..+... ..+++++++||+++.|++++|+++.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2333222211 234579999999999999999999887643
No 96
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=3.3e-21 Score=137.72 Aligned_cols=126 Identities=22% Similarity=0.351 Sum_probs=100.6
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ..+.+.+++ +.+.+|||+|+++|...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 48 ~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (186)
T 1ksh_A 48 PTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 125 (186)
T ss_dssp CCSSEEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEE
Confidence 6666 333455554 778999999999999999999999999999999999999999999988876542 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|+.+.. ..++..+... ..+++++++||+++.|++++|+++.+.+.+
T Consensus 126 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 126 ANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 9999997642 3333333222 235689999999999999999999988754
No 97
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.87 E-value=1.7e-21 Score=138.94 Aligned_cols=123 Identities=18% Similarity=0.327 Sum_probs=98.2
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ..+.+.+++ +.+.||||+|+++|...+..+++++|++++|||+++.+++..+..|+..+.... ..++|+++|
T Consensus 51 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 128 (181)
T 2h17_A 51 PTIGSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128 (181)
T ss_dssp CCSSSSCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred CcCceeeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEE
Confidence 5555 333455655 789999999999999999999999999999999999999999999988876542 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYA-----EREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+||+|+.+. ...++..+.. ...+++++++||+++.|++++|+++.+.
T Consensus 129 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 129 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred EECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999999752 3344444433 2234689999999999999999998764
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=3.6e-22 Score=143.17 Aligned_cols=126 Identities=17% Similarity=0.295 Sum_probs=99.0
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ..+.+.++ .+.+.+|||+|++++...+..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 52 ~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 129 (189)
T 2x77_A 52 PTVGVNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIF 129 (189)
T ss_dssp SSTTCCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEE
T ss_pred CCCceEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEE
Confidence 5666 33344555 4788999999999999999999999999999999999999999998888775543 247999999
Q ss_pred EeCCCCCCccCCCHHHHHHH-----HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSY-----AEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+||+|+.+.. ...+.... +...+++++++||+++.|++++|+++.+.+.+
T Consensus 130 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 130 ANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 9999997632 22222221 12234579999999999999999999988764
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=6.9e-21 Score=135.50 Aligned_cols=127 Identities=17% Similarity=0.336 Sum_probs=97.7
Q ss_pred CCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEE
Q 043745 4 PRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMI 81 (174)
Q Consensus 4 pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv 81 (174)
||+| ....+.+++ ..+.+|||+|++.+...+..+++++|++++|||+++.+++..+..|+..+.... ..+.|+++|
T Consensus 48 ~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 48 PTIGFNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp SSTTCCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred CcCccceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEE
Confidence 5566 333455554 778999999999999999999999999999999999999999999988886653 257999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAER-----EGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+||+|+.+. ...++..+.... .+++++++||+++.|++++|+++.+.+.++
T Consensus 126 ~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 126 ANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 999999753 334444433321 235799999999999999999999988654
No 100
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=1.3e-21 Score=153.50 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=102.6
Q ss_pred CCcc-ceeEEEECC----eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHH
Q 043745 4 PRLG-KLCDFQVEG----RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKEL 68 (174)
Q Consensus 4 pt~g-~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i 68 (174)
+|+| ....+.+++ ..+.+++|||+|++.|+..|..||++++++|||||++ +..++.....|+..+
T Consensus 163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i 242 (354)
T 2xtz_A 163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242 (354)
T ss_dssp CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence 5556 233344566 6799999999999999999999999999999999998 778999999999888
Q ss_pred Hhhc-CCCCeEEEEEeCCCCCCccC--C-------------------CHHHHHHHHHH----------------hCCcEE
Q 043745 69 RDHA-DSNIVIMMIGNKTDLKHLRA--V-------------------ATEDAQSYAER----------------EGLSFI 110 (174)
Q Consensus 69 ~~~~-~~~~piilv~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~ 110 (174)
.... ..++|++||+||+||.+.+. + +.+++..++.+ ..+.++
T Consensus 243 ~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 322 (354)
T 2xtz_A 243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIY 322 (354)
T ss_dssp HTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEE
T ss_pred HhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEE
Confidence 6543 25799999999999854322 1 14566666443 124568
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 111 ETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 111 ~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
+|||+++.|++++|+++.+.+.+...
T Consensus 323 eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 323 RTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643
No 101
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=3.2e-22 Score=163.45 Aligned_cols=122 Identities=18% Similarity=0.348 Sum_probs=94.5
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 92 (174)
++...+.+.||||+|++.|..++..+++++|++|+|||++++++|..+..|+..+..... .++|+|||+||+|+.+.
T Consensus 361 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-- 438 (497)
T 3lvq_E 361 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-- 438 (497)
T ss_dssp EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--
T ss_pred EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--
Confidence 444557899999999999999999999999999999999999999999988888755432 57999999999999763
Q ss_pred CCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 93 VATEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 93 ~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
....+...... ..+++++++||++|.|++++|++|.+.+.+....
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 22333322211 1234699999999999999999999887555433
No 102
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.85 E-value=4.8e-21 Score=152.11 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=106.1
Q ss_pred CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745 3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH 71 (174)
Q Consensus 3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~ 71 (174)
.||+| ..+.+.+++ +.+++|||+|++.|+..|..||++++++|||||+++ ..+|..+..|+..+...
T Consensus 202 ~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 202 VLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred cceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 47888 444566665 889999999999999999999999999999999999 88999999999998765
Q ss_pred c-CCCCeEEEEEeCCCCCCccC---C---------------------------CHHHHHHHH-----HH--------hCC
Q 043745 72 A-DSNIVIMMIGNKTDLKHLRA---V---------------------------ATEDAQSYA-----ER--------EGL 107 (174)
Q Consensus 72 ~-~~~~piilv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~ 107 (174)
. ..++|++||+||+||...+. + ..+++..|+ .. .++
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 3 35799999999999854332 2 134555553 22 245
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 108 SFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 108 ~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
.+++|||+++.||+++|.++.+.+.+...
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998876643
No 103
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.85 E-value=6.2e-22 Score=141.75 Aligned_cols=117 Identities=20% Similarity=0.395 Sum_probs=94.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
+..+.+.+|||+|+++|..++..++.+++++++|||+++. .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHH
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhH
Confidence 4567899999999999999999999999999999999997 579999999998876543 78999999999997644332
Q ss_pred ---HHHHHHHHHHhCCc----EEEEeccCCC-CHHHHHHHHHHHHHH
Q 043745 95 ---TEDAQSYAEREGLS----FIETSALEAI-NVEKAFQTILSEIYR 133 (174)
Q Consensus 95 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~v~~~l~~~i~~ 133 (174)
.+..+.++..++++ ++++||+++. +++++++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 23445666667776 9999999997 888888888776654
No 104
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=2.8e-21 Score=149.81 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=106.3
Q ss_pred CCCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHh
Q 043745 2 GQPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKELRD 70 (174)
Q Consensus 2 g~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~ 70 (174)
..||+| ....+.++ .+.+++|||+|++.++..|..||++++++|||||++ +..++.....|+..+..
T Consensus 151 r~~TiGi~~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CCCCCSEEEEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred cCceeeEEEEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 358999 44444455 488999999999999999999999999999999665 56678777778887765
Q ss_pred hcC-CCCeEEEEEeCCCCCCcc----------------CCCHHHHHHHHH----------HhCCcEEEEeccCCCCHHHH
Q 043745 71 HAD-SNIVIMMIGNKTDLKHLR----------------AVATEDAQSYAE----------REGLSFIETSALEAINVEKA 123 (174)
Q Consensus 71 ~~~-~~~piilv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~v 123 (174)
... .++|++|++||+|+.+.+ .++.+++..++. ..++.++++||+++.|++.+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence 432 579999999999986544 467788888743 34567899999999999999
Q ss_pred HHHHHHHHHHH
Q 043745 124 FQTILSEIYRI 134 (174)
Q Consensus 124 ~~~l~~~i~~~ 134 (174)
|..+.+.+++.
T Consensus 309 F~~v~~~Il~~ 319 (327)
T 3ohm_A 309 FAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 105
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=5.9e-20 Score=132.34 Aligned_cols=128 Identities=73% Similarity=1.136 Sum_probs=113.8
Q ss_pred CCcc---ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 4 PRLG---KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 4 pt~g---~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
||+| ....+.+++..+.+.+||++|++++...+..+++.++++++|||.++..+++.+..|+..+......+.|+++
T Consensus 60 ~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~ 139 (191)
T 1oix_A 60 STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139 (191)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 5666 4567788999999999999999999999999999999999999999999999998898887665445789999
Q ss_pred EEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 81 IGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
++||.|+.+.+.+..++++.++...++.++++||+++.|++++|+.+.+.+
T Consensus 140 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999987677788889999999999999999999999999999998765
No 106
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=3.8e-21 Score=151.33 Aligned_cols=132 Identities=19% Similarity=0.264 Sum_probs=101.1
Q ss_pred CCCcc-ceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q 043745 3 QPRLG-KLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----------PTTFENVSRWLKELRDH 71 (174)
Q Consensus 3 ~pt~g-~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~ 71 (174)
.||+| ..+.+.+++ +.+++|||+|++.|+..|..+|++++++|||||+++ ..++.....|+..+...
T Consensus 186 ~~T~Gi~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp CCCSSEEEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CCccceEEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 47888 444555654 889999999999999999999999999999999999 67899998998888654
Q ss_pred c-CCCCeEEEEEeCCCCCCcc----------------CCCHHHHHHHHH-----------HhCCcEEEEeccCCCCHHHH
Q 043745 72 A-DSNIVIMMIGNKTDLKHLR----------------AVATEDAQSYAE-----------REGLSFIETSALEAINVEKA 123 (174)
Q Consensus 72 ~-~~~~piilv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~v 123 (174)
. ..++|+||++||+||.+.+ .++.+++..++. ..++.+++|||+++.|++++
T Consensus 264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 2 2579999999999996432 266777777762 34578899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043745 124 FQTILSEIYRIIS 136 (174)
Q Consensus 124 ~~~l~~~i~~~~~ 136 (174)
|+++.+.+.+...
T Consensus 344 F~~v~~~i~~~~l 356 (362)
T 1zcb_A 344 FRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=3.5e-22 Score=154.45 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=96.8
Q ss_pred CCccceeEEEECCeEEEEEEEeCCCchhhhh---hhHHhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeE
Q 043745 4 PRLGKLCDFQVEGRTIKAQIWDTAGQERYRA---ITSAYYRGALGALLVYDVTKP--TTFENVSRWLKELRDHADSNIVI 78 (174)
Q Consensus 4 pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~pi 78 (174)
||+|.... .++ ..+.+++|||+||++|.. .+..||++++++|||||++++ +.+..+..|+..+.... +++|+
T Consensus 33 ~Tig~~~~-~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipi 109 (331)
T 3r7w_B 33 STSNPSLE-HFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINI 109 (331)
T ss_dssp CCCSCCCE-EEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEE
T ss_pred CeeeeeeE-EEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcE
Confidence 67772221 233 348899999999999974 468999999999999999997 34444445565555444 47999
Q ss_pred EEEEeCCCCCCc-------cCCCHHHHHHHHHH----hCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 79 MMIGNKTDLKHL-------RAVATEDAQSYAER----EGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 79 ilv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
++++||+||... +++..++++++++. +++.|+++||++ .++.++|..+++.+...
T Consensus 110 llvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 110 EVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp EEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred EEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 999999999753 35666777788875 678999999997 59999999998776543
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.3e-22 Score=154.61 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=87.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCCCccCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 94 (174)
...+.+.||||+|++.|..++..+++.+|++|+|||+++.++|..+..|+..+.... ..++|++||+||+|+.+.. .
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~ 283 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--N 283 (329)
T ss_dssp ETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--C
T ss_pred cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--C
Confidence 344789999999999999999999999999999999999999999988877765433 2579999999999997633 2
Q ss_pred HHHHHHHHH-----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAE-----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 95 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.++...... ..+++++++||+++.|++++|++|++.+.+
T Consensus 284 ~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 284 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 233222221 123569999999999999999999987653
No 109
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.83 E-value=3.5e-21 Score=140.68 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=84.9
Q ss_pred EEEECCe-EEEEEEEeCCCchhhhh-hhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHH-HHhh--cCCCCeEEEEEeC
Q 043745 11 DFQVEGR-TIKAQIWDTAGQERYRA-ITSAYYRGALGALLVYDVTKPT-TFENVSRWLKE-LRDH--ADSNIVIMMIGNK 84 (174)
Q Consensus 11 ~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~-i~~~--~~~~~piilv~nK 84 (174)
.+.+++. .+.+.||||+|+++|.. ++..+++++|++|||||+++.+ ++..+..|+.. +... ...++|+++|+||
T Consensus 45 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 45 IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 3455544 68899999999999998 8999999999999999999854 46666554443 3331 2346899999999
Q ss_pred CCCCCccCCCH--HHHHHHHH---------------------------------Hh--CCcEEEEeccCC------CCHH
Q 043745 85 TDLKHLRAVAT--EDAQSYAE---------------------------------RE--GLSFIETSALEA------INVE 121 (174)
Q Consensus 85 ~Dl~~~~~~~~--~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~ 121 (174)
+|+...+.... +.+..... .+ +++|+++||+++ .|++
T Consensus 125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~ 204 (214)
T 2fh5_B 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 204 (214)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence 99976433211 11111111 11 567999999999 9999
Q ss_pred HHHHHHHHH
Q 043745 122 KAFQTILSE 130 (174)
Q Consensus 122 ~v~~~l~~~ 130 (174)
++|+++.+.
T Consensus 205 ~lf~~l~~~ 213 (214)
T 2fh5_B 205 DLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=4.9e-20 Score=142.21 Aligned_cols=117 Identities=20% Similarity=0.355 Sum_probs=96.8
Q ss_pred EEECCeEEEEEEEeCCCchhh-----hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH---HhhcCCCCeEEEEEe
Q 043745 12 FQVEGRTIKAQIWDTAGQERY-----RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL---RDHADSNIVIMMIGN 83 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i---~~~~~~~~piilv~n 83 (174)
+.+++ .+.+.+|||+|++.| ...+..+++++|++|+|||+++.++++.+..|...+ .... .++|+++|+|
T Consensus 46 ~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~N 123 (307)
T 3r7w_A 46 LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLH 123 (307)
T ss_dssp EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEe
Confidence 34444 578999999999998 778999999999999999999999999987775544 3333 4799999999
Q ss_pred CCCCCC--ccC----CCHHHHHHHHHHhC---CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 84 KTDLKH--LRA----VATEDAQSYAEREG---LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 84 K~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+|+.+ .+. +..+++++++..+| ++++++||++ .++.++|..+++.+
T Consensus 124 K~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 999976 443 55678889999987 7899999999 89999998887654
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=5.5e-20 Score=129.36 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=87.5
Q ss_pred EEECCeEEEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 043745 12 FQVEGRTIKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGN 83 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n 83 (174)
+.+++ ..+.+|||+|++.|. .+...++. ++|++++|+|+++.+ ....|+..+... +.|+++|+|
T Consensus 45 ~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~n 116 (165)
T 2wji_A 45 FEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALN 116 (165)
T ss_dssp EEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEE
Confidence 34444 578999999998774 44566765 899999999998854 344577776553 689999999
Q ss_pred CCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 84 KTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 84 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
|+|+...+.+.. +.+.++..++++++++||+++.|++++|+++.+.+
T Consensus 117 K~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 117 KMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred chHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 999975444443 46788888999999999999999999999998764
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=142.33 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=93.4
Q ss_pred ECCeEEEEEEEe-----------------------CCCchhhhhhhHHhhc---------------------cCCEEEEE
Q 043745 14 VEGRTIKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GALGALLV 49 (174)
Q Consensus 14 ~~~~~~~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v 49 (174)
+++..+.++||| ++|+++|..++..++. ++|++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 567888999999 7788888888888887 79999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHH
Q 043745 50 YDVTKP--TTFENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 50 ~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~v~~ 125 (174)
||++++ ++|+.+..|+..+... ...++|++||+||+|+.+.+.+ ++.+.++.. .+++++++||+++.|++++|+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 999998 9999999999988765 2247999999999999765444 567777776 478999999999999999999
Q ss_pred HHHHHHH
Q 043745 126 TILSEIY 132 (174)
Q Consensus 126 ~l~~~i~ 132 (174)
++++.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988763
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=2.5e-20 Score=145.10 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=103.8
Q ss_pred CCCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhh
Q 043745 2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVT----------KPTTFENVSRWLKELRDH 71 (174)
Q Consensus 2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~ 71 (174)
..||+|.. ...+..+.+.+++|||+|++.|+..|..||++++++|||||++ +..++.....|+..+...
T Consensus 145 ~~~TiGi~-~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 145 RTKTTGIH-EYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp CCCCCSCE-EEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred ccceeeeE-EEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 35888933 2333334588999999999999999999999999999999998 678888888888887654
Q ss_pred cC-CCCeEEEEEeCCCCCCcc---------------CCCHHHHHHHHHH-h--------------------------CCc
Q 043745 72 AD-SNIVIMMIGNKTDLKHLR---------------AVATEDAQSYAER-E--------------------------GLS 108 (174)
Q Consensus 72 ~~-~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~ 108 (174)
.. .++|++|++||+|+.+.+ ....+++.+++.. + .+.
T Consensus 224 ~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 32 579999999999985321 1245565555432 2 367
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 109 FIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 109 ~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
++++||+++.|++.+|..+.+.|++
T Consensus 304 ~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=1.5e-19 Score=133.56 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=89.3
Q ss_pred EEEEEEeCCCc------hhh---hhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQ------ERY---RAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~------~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
..+.||||+|+ +.. ...+..++..+|++|+|||+++..++. ....|+..+.... .++|+++|+||+|+
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl 154 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDK 154 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGG
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCccc
Confidence 57899999999 431 122345578899999999999987765 2345666665432 37899999999999
Q ss_pred CCccCCCHH---HHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHHhh
Q 043745 88 KHLRAVATE---DAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIYRIISK 137 (174)
Q Consensus 88 ~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~~ 137 (174)
.+.+.+... ..+.++...+ ++++++||+++.|++++|+++.+.+.+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 876666654 4566677777 8999999999999999999999998876543
No 115
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=6.6e-20 Score=141.17 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=98.5
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.||+|....+.+..+. .+.+||+ +++|+.+++.+++++|++|+|||+++++ ++..+..|+..+.. .++|++||
T Consensus 48 ~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv 121 (301)
T 1u0l_A 48 KIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMV 121 (301)
T ss_dssp CCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEE
T ss_pred CCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEE
Confidence 4899954444443322 6899999 9999999999999999999999999987 78889999987755 27899999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+||+||.+.+.+ ++.++++..++ ++++++||+++.|++++|..+..
T Consensus 122 ~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 122 INKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp ECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred EeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999999764433 45677777777 89999999999999999988754
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.79 E-value=2.4e-19 Score=128.03 Aligned_cols=113 Identities=23% Similarity=0.201 Sum_probs=90.2
Q ss_pred EEEEEeCCC-----------chhhhhhhHHhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------H-HhhcCCCCe
Q 043745 20 KAQIWDTAG-----------QERYRAITSAYYRG-ALGALLVYDVTKPTTFENV-SRWLKE--------L-RDHADSNIV 77 (174)
Q Consensus 20 ~l~l~D~~G-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~p 77 (174)
.+.+|||+| ++.|...+..++++ +++++++|++.|..++..+ ..|... + ......++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 578999999 78888889989887 8888888888888888877 667542 2 122224789
Q ss_pred EEEEEeCCCCCCccCCCHHHHHHHHHHhCCc-------EEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 78 IMMIGNKTDLKHLRAVATEDAQSYAEREGLS-------FIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 78 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
+++|+||+|+...+ .++.++++..++.+ ++++||+++.|++++|+++.+.+.+..
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99999999997644 56788888888864 799999999999999999999876543
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=6.5e-19 Score=136.01 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=93.2
Q ss_pred EEEEEEEeCCCchh----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 18 TIKAQIWDTAGQER----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 18 ~~~l~l~D~~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
...+.||||||+.+ +...+..++..+|++++|+|+++..++.....|+..+... +.|+++|+||+|+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccC
Confidence 57789999999854 3366788899999999999999988888887788877653 6899999999999
Q ss_pred CCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
...+....+....+...++ .+++++||+++.|++++|+++.+.+
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 7445555677788888876 7899999999999999999988765
No 118
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=5.7e-19 Score=124.88 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=83.9
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
.+.+++. .+.||||+|++.|..++..++..+|++++|||+++....... .++..+.. .++|+++|+||+|+.+.
T Consensus 49 ~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~---~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 49 QVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA---ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG---GSCCEEEEEETTTSSCS
T ss_pred EEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh---CCCCEEEEEECccCCcC
Confidence 4566664 568999999999999999999999999999999884322221 12222222 36899999999999752
Q ss_pred cCCCHHHHHHHHHHh-------C--CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAERE-------G--LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
..++........ + ++++++||+++.|++++|+++++.+...
T Consensus 123 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 123 ---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp ---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 233333333322 2 4799999999999999999999887654
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=4.9e-19 Score=145.94 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=95.5
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
..+.+.+||++|++.|..++..+++++|++|+|||+++. +.+..|+..+..+.. +.|+++|+||+|+.+.+.+..+
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~ 171 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQK 171 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHH
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHH
Confidence 357899999999999999999999999999999999865 455778888877754 6899999999999887788888
Q ss_pred HHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 97 DAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+.++...+.+++++||+++.|++++|+++.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 172 KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999887654
No 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=1.3e-18 Score=124.31 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=87.8
Q ss_pred EEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.+|||+|++.+. .++..++. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS 127 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence 678999999998774 45667775 4999999999875 5566678777655 36899999999999765
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+. .+.+.++..++++++++||+++.|++++|+++.+.+..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4444 45778888899999999999999999999999887654
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=8.1e-19 Score=132.31 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=85.5
Q ss_pred EEEEEEEeCCCchhhhh------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRA------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
...+.||||||+..+.. +...++ .++|++++|+|+++.++. ..|+..+... ++|+++++||+|+.+
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAK 124 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCC
Confidence 36789999999987754 335665 589999999999986544 3466665543 689999999999976
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.+.+.. +...++..++++++++||+++.|++++|+++.+.+
T Consensus 125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 554443 47788899999999999999999999999998865
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=2.2e-19 Score=127.27 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=83.5
Q ss_pred eEEEECCeEEEEEEEeCCCchhhhh------h--hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 10 CDFQVEGRTIKAQIWDTAGQERYRA------I--TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 10 ~~~~~~~~~~~l~l~D~~G~~~~~~------~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
..+.+++. .+.+|||+|++++.. . ...+++++|++++|||+++..++. ...|+..+......++|+++|
T Consensus 45 ~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv 121 (172)
T 2gj8_A 45 EHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVV 121 (172)
T ss_dssp EEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEE
T ss_pred EEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEE
Confidence 45566664 478999999865321 1 124688999999999999988876 347777776655457999999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+||+|+.+... .++...+.+++++||+++.|++++|+++.+.+.
T Consensus 122 ~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 122 RNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred EECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99999954211 112224678999999999999999999987653
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.76 E-value=8.8e-19 Score=133.07 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=87.6
Q ss_pred EECCeEEEEEEEeCCCchhhh------hhhHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 13 QVEGRTIKAQIWDTAGQERYR------AITSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.++. ...+.+|||||+..+. .++..|+. ++|++++|||+++.+++ ..|...+.. .++|+++++||
T Consensus 44 ~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK 116 (272)
T 3b1v_A 44 LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNM 116 (272)
T ss_dssp ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEEC
T ss_pred EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEC
Confidence 3444 5678999999998775 45677776 69999999999886544 456665554 26899999999
Q ss_pred CCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+|+.+.+.+. .+...++..++++++++||+++.|++++|+++.+.+
T Consensus 117 ~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 117 IDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred hhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 9997544444 356788888999999999999999999999987653
No 124
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=2.8e-18 Score=119.29 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=80.6
Q ss_pred EEECCeEEEEEEEeCCCchh-------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 12 FQVEGRTIKAQIWDTAGQER-------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
+.+++ ..+.+|||+|++. +...+..+++.+|++++|||+++..+... .|+..+... .+.|+++|+||
T Consensus 44 ~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK 117 (161)
T 2dyk_A 44 VETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATK 117 (161)
T ss_dssp EEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEEC
T ss_pred EEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEEC
Confidence 33444 3678999999887 45667788999999999999998643322 222222222 26899999999
Q ss_pred CCCCCccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+|+.+.+ ++..+++ .++. +++++||+++.|++++|+++.+.+
T Consensus 118 ~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 118 VDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred cccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 9997642 3344555 6777 899999999999999999998764
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.73 E-value=2.4e-18 Score=129.63 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=83.6
Q ss_pred EEECCeEEEEEEEeCCCchhhhh----------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRA----------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
+.+++ ..+.||||||+..+.. +...++ .++|++|+|+|+++.+++..+..| +.. .++|++
T Consensus 43 ~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvi 114 (256)
T 3iby_A 43 FLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVV 114 (256)
T ss_dssp EEETT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEE
T ss_pred EEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEE
Confidence 34455 3789999999977653 566777 899999999999986655544333 332 268999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+|+||+|+.+.+.+.. ....+...++++++++||+++.|++++|+++.+.
T Consensus 115 lv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 115 VALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 9999999865443322 3456788889999999999999999999988765
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=3e-17 Score=132.87 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=91.5
Q ss_pred EEEECCeEEEEEEEeCCC----------chhhhhhhHH-hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 11 DFQVEGRTIKAQIWDTAG----------QERYRAITSA-YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G----------~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.+.+++. .+.||||+| ++.|...+.. +++.+|++++|+|+++.-+. ....|+..+.. .++|++
T Consensus 237 ~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~i 310 (456)
T 4dcu_A 237 SFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVV 310 (456)
T ss_dssp EEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEE
T ss_pred EEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEE
Confidence 3445554 689999999 7888777664 78999999999999875332 22345555544 368999
Q ss_pred EEEeCCCCCCccCCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQSYAERE-----GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+|+||+|+.+.+....++..+.+.+. +.+++++||++|.|++++|+++.+.+...
T Consensus 311 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 311 IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999876666667777776665 47999999999999999999999877554
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=2.6e-17 Score=132.58 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=87.9
Q ss_pred EECCeEEEEEEEeCCCc----------hhhhhhhH-HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 13 QVEGRTIKAQIWDTAGQ----------ERYRAITS-AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~----------~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.+++. .+.||||+|+ +.|..++. .+++.+|++++|||+++..+++.. .|+..+.. .+.|+++|
T Consensus 219 ~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv 292 (436)
T 2hjg_A 219 TYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIV 292 (436)
T ss_dssp EETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred EECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEE
Confidence 34553 4899999998 66665554 488999999999999998887775 57666654 36899999
Q ss_pred EeCCCCCCccCCCHHHHH-HHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQ-SYAERE----GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+||+|+.+.+....++.. ++...+ +.+++++||++|.|++++|+.+.+.+...
T Consensus 293 ~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 293 VNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 999999865554433332 223332 57999999999999999999998887653
No 128
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.71 E-value=1.3e-17 Score=119.67 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=81.5
Q ss_pred EEEEEeCCC----------chhhhhhhHHhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 20 KAQIWDTAG----------QERYRAITSAYYRGA---LGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 20 ~l~l~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.||||+| ++.|..++..+++.+ |++++|+|+++..++.... ++..+.. .+.|+++|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D 145 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD 145 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence 479999999 888888899999888 9999999999887776542 2222222 3689999999999
Q ss_pred CCCccCCCH--HHHHH-HHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 87 LKHLRAVAT--EDAQS-YAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 87 l~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+.+.+.. +++++ ++...+.+++++||+++.|++++|+++.+.+
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 976544322 22222 2222357899999999999999999998765
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2e-18 Score=126.28 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=77.6
Q ss_pred EEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVT-KPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~ 89 (174)
+.+.+|||+|++.++..+..+++. +|++|+|||++ +.+++..+..|+..+... ...++|+++|+||+|+..
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 468999999999999999999987 89999999999 888999998888887654 234799999999999987
Q ss_pred ccCCC------HHHHHHHHHHhCCcEEEEeccCCCC
Q 043745 90 LRAVA------TEDAQSYAEREGLSFIETSALEAIN 119 (174)
Q Consensus 90 ~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 119 (174)
.+.+. .+++..++...+..++++||+++.+
T Consensus 135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 55443 4556777777788999999998865
No 130
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.71 E-value=1.6e-17 Score=118.93 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=82.6
Q ss_pred EEEEEeCCC----------chhhhhhhHHhhccC---CEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 20 KAQIWDTAG----------QERYRAITSAYYRGA---LGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 20 ~l~l~D~~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.+.+|||+| ++.|..++..+++.+ |++++|+|+++..+ ...+..|+... ++|+++|+||
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence 478999999 778888888888877 99999999987533 33344454432 6899999999
Q ss_pred CCCCCcc--CCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 85 TDLKHLR--AVATEDAQSYAEREG-LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 85 ~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+|+.+.. ....++++.++...+ ++++++||+++.|++++|+++.+.+.
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 9997532 233355566666644 79999999999999999999988764
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=5.4e-17 Score=131.84 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=72.7
Q ss_pred EEEEEEeCCCchhhhhhh--------HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRAIT--------SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
+.+.||||+|++++...+ ..+++.+|++++|||+++..++..+..+...+.... ++|+++|+||+|+...
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 568999999998776543 346889999999999999887754433333332222 6899999999999764
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
... ..+.+......+++++||+++.|++++|+++.+.+.
T Consensus 359 ~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 359 ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 432 223444442478999999999999999999988765
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=1.1e-17 Score=127.04 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=79.7
Q ss_pred EEEEEEeCCCchhhh----------hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 19 IKAQIWDTAGQERYR----------AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~----------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
..+.||||||+..+. ..+..++ ..+|++++|+|+++.+....+ ...+... ++|+++|+||+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D 123 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD 123 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence 457899999988765 2234443 699999999999986655443 3334333 689999999999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+.+.+.+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus 124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 86543321 235677888999999999999999999999886654
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.68 E-value=2.9e-16 Score=123.40 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=89.2
Q ss_pred EEEEEEeCCCchhhh---------hhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQERYR---------AITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
..+.+|||+|...+. .....+...+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 468999999985431 12223455799999999999877 77888889888876554 6899999999999
Q ss_pred CCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 88 KHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.....+ ++...++...+++++++||++|+|++++|+++.+.+...
T Consensus 293 ~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 293 ADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp CCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 764332 456666777889999999999999999999999888654
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=3.2e-16 Score=126.27 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=77.4
Q ss_pred EEEEEeCCCchh---------hhhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQER---------YRAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.||||+|.+. +...+..+++++|+++||||+.+..+... +..|+.. . ++|+++|+||+|+.
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK---S---TVDTILVANKAENL 123 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---TCCEEEEEESCCSH
T ss_pred EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEeCCCCc
Confidence 578999999764 34567788999999999999987644432 3334332 1 68999999999986
Q ss_pred CccCCCHHHH-HHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 89 HLRAVATEDA-QSYAEREGL-SFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+. . ..+. .++. .+++ +++++||++|.|++++|+++.+.+..
T Consensus 124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 42 1 1222 4443 5676 78999999999999999999988764
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.67 E-value=1.2e-16 Score=121.15 Aligned_cols=108 Identities=20% Similarity=0.104 Sum_probs=84.0
Q ss_pred EEEEEEeCCCchhhhh------hhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRA------ITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.||||||+..+.. .+..|+ .++|++++|+|+++.+ ....|+..+.... ..|+++++||+|+.+.
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKK 124 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcc
Confidence 4589999999987765 566676 6899999999998853 3334445554432 3899999999998654
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+.+.. ....++..++++++++||+++.|++++|+.+.+.+.
T Consensus 125 ~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 125 KGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp HTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred cccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 43333 277788899999999999999999999999988753
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.67 E-value=9.2e-17 Score=125.48 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=89.0
Q ss_pred EEEEEEeCCCchh----hhhhhHHhhc---cCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q 043745 19 IKAQIWDTAGQER----YRAITSAYYR---GALGALLVYDVTK---PTTFENVSRWLKELRDHAD--SNIVIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~----~~~~~~~~~~---~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~D 86 (174)
..+.||||||+.. +..+...|++ .+|++|+|+|+++ +++++.+..|+..+..+.. .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 4689999999643 3445555655 5999999999998 7889999999999887653 4799999999999
Q ss_pred CCCccCCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+...+ +..++++..++ .+++++||+++.|+++++++|.+.+.
T Consensus 286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 97532 45667777776 68999999999999999999988764
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.66 E-value=1.3e-15 Score=126.57 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=92.8
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++..+.++||||||+.+|...+..++..+|++|+|+|+++..+++....|...+. .++|+++++||+|+...+ .
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~ 140 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P 140 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence 5667899999999999999999999999999999999999877777777765543 268999999999997632 2
Q ss_pred HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.....++...+++ +++++||+++.|++++|+++.+.+.
T Consensus 141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 3445667777776 4999999999999999998887653
No 138
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.66 E-value=9.6e-17 Score=123.48 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=78.5
Q ss_pred EEEEEEEeCCCchh--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQER--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWL-KELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
..++.||||||+.+ +......+++.+|++++|||+++..+.. ..|+ ..+.... .+.|+++|+||+|+.
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence 46789999999876 5566778899999999999999864443 3444 4454432 368999999999997
Q ss_pred CccCCCHHHHHHHHHHh-C-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAERE-G-LSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..+. +..+.+..+ + .+++++||+++.|++++|+.+.+.+
T Consensus 131 ~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 131 KYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp SSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 5322 022333332 3 4789999999999999999887654
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=6.8e-16 Score=125.50 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=84.6
Q ss_pred EEEECCeEEEEEEEeCCCch-hhhh--------hhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 11 DFQVEGRTIKAQIWDTAGQE-RYRA--------ITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~-~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.+.+++ ..+.||||+|+. .+.. ....+++.+|++|+|||+++..+++... ++..+ .+.|+++|
T Consensus 285 ~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV 356 (482)
T 1xzp_A 285 EIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVV 356 (482)
T ss_dssp EEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEE
T ss_pred EEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEE
Confidence 455665 468999999988 5532 2456789999999999999887776543 33332 26899999
Q ss_pred EeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 82 GNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 82 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+||+|+.+. +..+++..++. .+.+++++||+++.|++++++++.+.+...
T Consensus 357 ~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 357 INKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQEI 406 (482)
T ss_dssp EEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred EECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 999999752 44455544432 346899999999999999999999987643
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=9.8e-17 Score=128.46 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=85.1
Q ss_pred EEEEEeCCCchhhhhh-------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 20 KAQIWDTAGQERYRAI-------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
.+.||||+|+++|..+ ...++.++|++|+|||++..+. ...|+..+... ++|+++|+||+|+...+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence 6899999999877654 4568899999999999944332 35566666654 689999999999987554
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
. +..+++++.++++++++||+++.|++++|+++.+.+..
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3 56677777788999999999999999999999887643
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=2.3e-15 Score=125.04 Aligned_cols=112 Identities=28% Similarity=0.371 Sum_probs=92.5
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
++..+.++||||||+.+|...+..++..+|++|+|+|+++..+.+....|..... .++|+++++||+|+.... .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~ 142 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V 142 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence 5667899999999999999999999999999999999999887877777765442 268999999999997632 2
Q ss_pred HHHHHHHHHHhCC---cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 95 TEDAQSYAEREGL---SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 95 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.....++...+++ +++++||++|.|++++|+++++.+.
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3445666676776 4899999999999999999887653
No 142
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=1.6e-15 Score=111.01 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=81.1
Q ss_pred CeEEEEEEEeCCC----------chhhhhhhHHhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 16 GRTIKAQIWDTAG----------QERYRAITSAYYRG---ALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 16 ~~~~~l~l~D~~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.....+.|||||| ++.|..++..++.. +|++++|+|+++..+.. ...|+..+.. .++|+++|+
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~ 151 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLL 151 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEE
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEE
Confidence 3346789999999 46667778888877 77899999998753322 2345555544 268999999
Q ss_pred eCCCCCCccCCC--HHHHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVA--TEDAQSYAER-------EGLSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 83 nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
||+|+.....+. .++..+.... .+.+++++||+++.|++++|++|.+.+....
T Consensus 152 nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 152 TKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred eccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 999997643321 1222233333 4568999999999999999999998875543
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.62 E-value=2e-16 Score=127.43 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=72.7
Q ss_pred EEEEEEeCCCch--------hhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQE--------RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
..+.||||+|++ .+...+..+++.+|++|||+|+.+..++.. .|+..+... .++|+++|+||+|+.+.
T Consensus 51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence 458999999986 677788889999999999999998766543 333333222 36899999999999753
Q ss_pred cCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 91 RAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+. +..++. .+++ +++++||++|.|++++++++.+.+.
T Consensus 127 ~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 127 RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred hh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 21 112222 4565 7899999999999999999987764
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.61 E-value=5.5e-15 Score=117.91 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=86.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATE 96 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~ 96 (174)
..+.||||||+++|...+..++..+|++|+|+|+++..++....+|+..+.... ..|+++++||+|+.+.... ..+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHH
Confidence 679999999999999999999999999999999998776777777877665543 3589999999999753221 112
Q ss_pred HHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 97 DAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 97 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
+..++.... +++++++||+++.|++++++++.+.+
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 223333222 46899999999999999999887654
No 145
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=2.3e-15 Score=118.86 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=85.8
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-CCCCCCcc
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGN-KTDLKHLR 91 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~n-K~Dl~~~~ 91 (174)
+......+.||||||+++|.......+..+|++|+|+| + ...+....+|+..+... ++|. ++++| |+|+ +.+
T Consensus 55 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~ 128 (370)
T 2elf_A 55 NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMH 128 (370)
T ss_dssp ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHH
T ss_pred EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHH
Confidence 33344569999999999998888888899999999999 4 34455556666655543 4666 88889 9999 533
Q ss_pred CCCH--HHHHHHHHHhC---CcEEE--EeccC---CCCHHHHHHHHHHHHHHH
Q 043745 92 AVAT--EDAQSYAEREG---LSFIE--TSALE---AINVEKAFQTILSEIYRI 134 (174)
Q Consensus 92 ~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~v~~~l~~~i~~~ 134 (174)
.+.. +++++++...+ +++++ +||++ +.|++++++.+.+.+...
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 2221 44555555443 68999 99999 999999999999887654
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=2.5e-15 Score=121.68 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhH--------HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITS--------AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.+.+++ ..+.||||+|+..+...+. .++..+|++++|||+++..+... ..|+..+. ..|+++|+
T Consensus 266 ~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~ 337 (462)
T 3geh_A 266 QLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVM 337 (462)
T ss_dssp EEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEE
T ss_pred EEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEE
Confidence 456666 4679999999876654333 36789999999999998766554 45555542 36999999
Q ss_pred eCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 83 NKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 83 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
||+|+.....+. ..+.+. .+.+++++||+++.|++++++++.+.+..
T Consensus 338 NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 338 NKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp ECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred ECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999997654432 111111 35689999999999999999999887643
No 147
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=4.2e-15 Score=114.37 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred chhhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC-HHHHHHHHHHhC
Q 043745 29 QERYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA-TEDAQSYAEREG 106 (174)
Q Consensus 29 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 106 (174)
++++..+.+.++.++|++++|||+++++ ++..+..|+..+.. .++|+++|+||+||.+..++. .++..+++..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 7788888889999999999999999986 89989999987655 368999999999997643222 345666777789
Q ss_pred CcEEEEeccCCCCHHHHHHHHH
Q 043745 107 LSFIETSALEAINVEKAFQTIL 128 (174)
Q Consensus 107 ~~~~~~Sa~~~~~i~~v~~~l~ 128 (174)
++++++||+++.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998764
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.56 E-value=5.3e-14 Score=110.78 Aligned_cols=121 Identities=20% Similarity=0.141 Sum_probs=85.5
Q ss_pred EEEECCeEEEEEEEeCCCc---------hhhhhhhHHhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEE
Q 043745 11 DFQVEGRTIKAQIWDTAGQ---------ERYRAITSAYYRGALGALLVYDVTKPT--TFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~pii 79 (174)
.+.+++ ..+.+|||+|. +.|...+. .+..+|++++|+|++++. ....+..|...+......+.|++
T Consensus 220 ~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i 296 (364)
T 2qtf_A 220 AIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL 296 (364)
T ss_dssp EEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE
T ss_pred EEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE
Confidence 455666 45799999996 23444443 578999999999999876 56666666665555443578999
Q ss_pred EEEeCCCCCCccCC-CHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAV-ATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+|+||+|+...... ..+.+..++..+ +.+++++||+++.|++++++++.+.+...
T Consensus 297 lV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 297 VTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 99999999653210 011233344555 24689999999999999999998876654
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.55 E-value=3.9e-14 Score=113.16 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=75.5
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK----PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-- 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-- 92 (174)
..+.||||||+++|...+...+..+|++|+|+|+++ .++++.+.. +.... ..|+++++||+|+.+...
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHH
Confidence 679999999999998888888888999999999995 344444432 22221 357999999999976433
Q ss_pred CCHHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 93 VATEDAQSYAERE---GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 93 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
...+++++++... +++++++||+++.|+++++++|.+.+
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 2345566666543 57899999999999999999887654
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.55 E-value=8.2e-14 Score=112.24 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=79.1
Q ss_pred EEECCeEEEEEEEeCCCchhhhhh------------hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAI------------TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 79 (174)
+.+++. .+.+|||+|..++... ...+++.+|++++++|+++..+.... .+...+.. .+.|++
T Consensus 223 i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~i 296 (439)
T 1mky_A 223 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASV 296 (439)
T ss_dssp EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEE
T ss_pred EEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEE
Confidence 445664 4789999998543321 13567889999999999986665542 23333322 268999
Q ss_pred EEEeCCCCCCccCCCHHHHHH-HHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVATEDAQS-YAERE----GLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+++||+|+.+.+....++..+ +...+ +.+++++||++|.|++++|+.+.+.+...
T Consensus 297 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 297 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999997654444444332 22332 47899999999999999999998876553
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.55 E-value=5.6e-15 Score=113.59 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=77.5
Q ss_pred EEEEEEEeCCCch-h--------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQE-R--------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~-~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
...+.||||||+. . +......+++.+|+++||+|+++ +.....|+..... ..+.|+++++||+|+.
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV 129 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence 3578999999987 3 23334567789999999999976 3333334433222 2368999999999997
Q ss_pred CccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 89 HLRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
..+....+.+.++...++. .++++||+++.|++++++.+.+.+
T Consensus 130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 5222223445556666675 699999999999999999887653
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.53 E-value=5.4e-14 Score=115.57 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=59.4
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+....+.++||||||+++|...+..+++.+|++|+|+|+++..+......| ..+.. .++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 75 MQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred EEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 33434457899999999999999999999999999999999987766665555 33333 2689999999999964
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.53 E-value=4e-14 Score=115.32 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=74.7
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFEN------VSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piilv~nK 84 (174)
...++.....+.||||||+++|...+..++..+|++|+|+|+++.+++.. ..+.+..+... . ..|+|+++||
T Consensus 103 ~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK 180 (483)
T 3p26_A 103 TSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNK 180 (483)
T ss_dssp EEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEEC
T ss_pred eEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEEC
Confidence 33455556789999999999999999999999999999999998654322 22222222222 1 2469999999
Q ss_pred CCCCCccCCCHH----HHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745 85 TDLKHLRAVATE----DAQSYAEREG-----LSFIETSALEAINVEKA 123 (174)
Q Consensus 85 ~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v 123 (174)
+|+.+.++...+ ++..++..++ ++++++||++|.|++++
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999763322222 2334444444 57899999999998753
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=7e-14 Score=113.85 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=83.2
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC--C
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA--V 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~ 93 (174)
..+.||||||+++|...+..++..+|++|+|+|+++ +++++.+ ..+... ++|+++++||+|+.+... .
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---~ip~IvviNK~Dl~~~~~~~~ 145 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF---NIPIIVVITKSDNAGTEEIKR 145 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT---TCCBCEEEECTTSSCHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc---CCCEEEEEECCCcccchhHHH
Confidence 578999999999999999999999999999999987 4444433 223322 578899999999975321 1
Q ss_pred CHHHHHHHHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 94 ATEDAQSYAERE----GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 94 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
..+++.+++... +.+++++||++|.|+++++++|.+.+.
T Consensus 146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 234455666555 578999999999999999999988775
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.51 E-value=2.4e-14 Score=114.29 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=77.9
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCc
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHL 90 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 90 (174)
+.++.....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+... ++| +++++||+|+.+.
T Consensus 68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCC
T ss_pred eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCc
Confidence 34444456789999999999999999999999999999999886533 345566655443 578 8999999999742
Q ss_pred cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCC
Q 043745 91 RA---VATEDAQSYAEREG-----LSFIETSALEAIN 119 (174)
Q Consensus 91 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 119 (174)
.. ...++.++++..++ .+++++||+++.|
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 21 11235666777665 5799999999977
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-14 Score=103.68 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRG----ALGALLVYDVT-KPTTFENVSRWLKELRDHA----DSNIVIMMIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~ 88 (174)
.+.+.||||+|++.+...+..++.. +|++|+|||++ +.+++..+..|+..+.... ..++|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 4568899999999998888888876 89999999999 8999999988887775432 2479999999999997
Q ss_pred CccC
Q 043745 89 HLRA 92 (174)
Q Consensus 89 ~~~~ 92 (174)
+.+.
T Consensus 170 ~~~~ 173 (193)
T 2ged_A 170 TARP 173 (193)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 6543
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.51 E-value=8e-14 Score=111.37 Aligned_cols=108 Identities=23% Similarity=0.233 Sum_probs=79.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP----TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA- 92 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~- 92 (174)
...+.||||||+++|.......+..+|++|+|+|+++. ++.+.+.. +.... ..|+++++||+|+.+...
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHH
Confidence 36799999999999988888888899999999999953 44444332 22222 357999999999976332
Q ss_pred -CCHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 93 -VATEDAQSYAER---EGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 93 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
...+++++++.. .+++++++||+++.|+++++++|.+.+
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 122344555543 357899999999999999999887654
No 158
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=104.62 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=68.9
Q ss_pred CCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHH---HHhhc--CCCCeEEEEEeCC-CCCCccCCCHHHHH
Q 043745 26 TAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKE---LRDHA--DSNIVIMMIGNKT-DLKHLRAVATEDAQ 99 (174)
Q Consensus 26 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~---i~~~~--~~~~piilv~nK~-Dl~~~~~~~~~~~~ 99 (174)
.+||+.++.+|+.||++.|++|||+|.+|.+.++ .+..+.. +.... ..++|++|++||. |++. ..+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3589999999999999999999999999876444 3333322 22211 1478999999995 7864 44555543
Q ss_pred HHHH----HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 100 SYAE----REGLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 100 ~~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+... ...+.+..|||.+|+|+.+.++||...+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3321 12356899999999999999999987654
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.50 E-value=6.8e-14 Score=112.72 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=77.1
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTT---FE---NVSRWLKELRDHADSNIV-IMMIGNKTD 86 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~D 86 (174)
+......+.||||||+++|...+..++..+|++|||+|+++... |+ ...+.+..+.. .++| +|+++||+|
T Consensus 90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D 166 (439)
T 3j2k_7 90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD 166 (439)
T ss_pred EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence 34444689999999999999999999999999999999988532 21 22222222222 2466 999999999
Q ss_pred CCCcc------CCCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHHH
Q 043745 87 LKHLR------AVATEDAQSYAEREG------LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 87 l~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~v~~ 125 (174)
+.... ....++...++..++ ++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 95311 111234455555555 4699999999999999765
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.49 E-value=5.6e-15 Score=118.92 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=81.6
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCC-eEEEEEeCCCCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA----DSNI-VIMMIGNKTDLK 88 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~-piilv~nK~Dl~ 88 (174)
++.....+.||||||+++|...+..++..+|++|+|||+++ .+|+.+..|..+...+. ..++ |+++++||+|+.
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 34445679999999999999999999999999999999998 67775544433322211 0133 689999999997
Q ss_pred Ccc------CCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745 89 HLR------AVATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 89 ~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~ 125 (174)
+.. ....+++++++..++ ++++++||++|.|+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 521 112355677777766 6799999999999986554
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.49 E-value=2.9e-13 Score=112.51 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=80.2
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA-- 94 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-- 94 (174)
.++||||||+++|..++..++..+|++|+|||+++ +++++.+.. +.. .++|+++++||+|+.......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence 48999999999999999999999999999999999 666655432 222 268999999999996421100
Q ss_pred -----------H---H-------HHHHHHHHhC---------------CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 95 -----------T---E-------DAQSYAEREG---------------LSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 95 -----------~---~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
. + +......+.+ ++++++||++|.|++++++++...+....
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 0 1111112222 37999999999999999999998776543
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.48 E-value=7.7e-14 Score=111.05 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=80.9
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCccC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLRA 92 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~ 92 (174)
+......+.||||||+++|...+..++..+|++|+|+|+++....+.. +++..+... ++| +++++||+|+.+...
T Consensus 61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~ 136 (397)
T 1d2e_A 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSE 136 (397)
T ss_dssp EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHH
T ss_pred eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHH
Confidence 334446789999999999998889999999999999999985443333 333433332 578 789999999974221
Q ss_pred ---CCHHHHHHHHHHhC-----CcEEEEeccCCCC----------HHHHHHHHHHH
Q 043745 93 ---VATEDAQSYAEREG-----LSFIETSALEAIN----------VEKAFQTILSE 130 (174)
Q Consensus 93 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~v~~~l~~~ 130 (174)
...++.++++..++ ++++++||+++.| +.++++.+.+.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 137 MVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 12245667777766 5899999998764 66666665543
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=1.8e-14 Score=116.63 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=72.3
Q ss_pred EEEEEEEeCCC--------chhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAG--------QERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
...+.+|||+| ++.+...+..+++.+|++|||+|..+..+ ....|+..+... .++|+++|+||+|+.+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 34689999999 77888889999999999999999876432 223344433332 3789999999999864
Q ss_pred ccCCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGL-SFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.. ....++. .+++ .++++||+++.|+.++++++.+.+
T Consensus 146 ~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 146 MR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp ---------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred hh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 21 1111121 2343 578999999999999999987754
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=7e-14 Score=112.51 Aligned_cols=107 Identities=22% Similarity=0.148 Sum_probs=79.3
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc-C-C
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR-A-V 93 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~-~ 93 (174)
.....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+.... -.|+++++||+|+.+.. . +
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHH
Confidence 3446789999999999999998999999999999999986422 3344544443331 23699999999997521 1 1
Q ss_pred --CHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043745 94 --ATEDAQSYAEREG-----LSFIETSALEAINVEKAFQ 125 (174)
Q Consensus 94 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v~~ 125 (174)
..++.++++..++ ++++++||++|.|++++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 2345666777777 6799999999999988544
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.46 E-value=1.4e-14 Score=117.65 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc---
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR--- 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~--- 91 (174)
..+.||||||+++|...+..++..+|++|+|+|+++. .+|+....|...+......++| +|+++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 5789999999999999999999999999999999986 2343222233332221113577 99999999996411
Q ss_pred ---CCCHHHHHHHHHHh-C------CcEEEEeccCCCCHHHHH
Q 043745 92 ---AVATEDAQSYAERE-G------LSFIETSALEAINVEKAF 124 (174)
Q Consensus 92 ---~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~v~ 124 (174)
....++...++..+ + ++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223466666666 4 569999999999998766
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.44 E-value=9.5e-14 Score=104.25 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=73.8
Q ss_pred EEEEEEeCCCchhhhh-----------hhHHhhccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEe-CC
Q 043745 19 IKAQIWDTAGQERYRA-----------ITSAYYRGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGN-KT 85 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-----------~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~n-K~ 85 (174)
..+.||||||+.++.. ....+++.+|++|+|||+++... ...+..|+..+.... ...|+++++| |+
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKE 149 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGG
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEccc
Confidence 5689999999876422 23346789999999999986322 222334444332111 1346666666 99
Q ss_pred CCCCccCCCH-------HHHHHHHHHhCCc---E--EEEeccCCCCHHHHHHHHHHHHHH
Q 043745 86 DLKHLRAVAT-------EDAQSYAEREGLS---F--IETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 86 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
|+.+. .+.. .+++.++...+.. + +++||+++.|++++|+++.+.+..
T Consensus 150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 99743 2222 3345566666543 2 789999999999999999988765
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=3.6e-13 Score=99.91 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=73.9
Q ss_pred EECCeEEEEEEEeCCCc-----------hhhhhhhHHhhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEE
Q 043745 13 QVEGRTIKAQIWDTAGQ-----------ERYRAITSAYYRGALGALLVYDVTKPTT--FENVSRWLKELRDHADSNIVIM 79 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~-----------~~~~~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~pii 79 (174)
.+++ ..+.||||||. +.+...+..+++++|++|+|+|+++... ...+..+...+... ...|++
T Consensus 74 ~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~i 149 (239)
T 3lxx_A 74 SWKE--TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMI 149 (239)
T ss_dssp EETT--EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEE
T ss_pred EeCC--ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEE
Confidence 3444 46799999993 3455566667788999999999876433 22222232222221 136999
Q ss_pred EEEeCCCCCCccCCC------HHHHHHHHHHhCCcEEEEeccCC-----CCHHHHHHHHHHHHH
Q 043745 80 MIGNKTDLKHLRAVA------TEDAQSYAEREGLSFIETSALEA-----INVEKAFQTILSEIY 132 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~v~~~l~~~i~ 132 (174)
+|+||+|+.+.+.+. .+.++++++..+..++.+++..+ .++.++|+.+...+.
T Consensus 150 iv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 150 LIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp EEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 999999986544433 24678888888888887776643 567777776655543
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.42 E-value=2e-13 Score=119.45 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=82.1
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR 91 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 91 (174)
.++.....+.||||||+++|...+..++..+|++|+|+|+++.... ...+|+..+... ++| +|+++||+|+.+..
T Consensus 353 ~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~ 428 (1289)
T 3avx_A 353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDE 428 (1289)
T ss_dssp EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCH
T ss_pred EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccch
Confidence 3444456789999999999999999999999999999999986432 233455554443 577 88999999997522
Q ss_pred CC---CHHHHHHHHHHhC-----CcEEEEeccCC--------CCHHHHHHHHHH
Q 043745 92 AV---ATEDAQSYAEREG-----LSFIETSALEA--------INVEKAFQTILS 129 (174)
Q Consensus 92 ~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~v~~~l~~ 129 (174)
.. ..+++++++..++ ++++++||++| .|+.++++.+.+
T Consensus 429 e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 429 ELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 21 2345667777766 58999999999 346666665544
No 169
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=102.12 Aligned_cols=106 Identities=9% Similarity=-0.023 Sum_probs=74.1
Q ss_pred CCCchhhhhhhHHhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHhhc-CCCCeEEEEEeC-CCCCCccCCCHHHHHH
Q 043745 26 TAGQERYRAITSAYYRGALGALLVYDVTKPTTFE---NVSRWLKELRDHA-DSNIVIMMIGNK-TDLKHLRAVATEDAQS 100 (174)
Q Consensus 26 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~~~ 100 (174)
.+||+.++.+|+.||++.|++|||+|.+|.+.++ ++.+....+.... ..++|++|++|| .|++. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4688999999999999999999999999987544 2222112222211 247999999996 68865 344554433
Q ss_pred HHH----HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 101 YAE----REGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 101 ~~~----~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
... ...+.+..|||.+|+|+.+.++|+.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 321 123568899999999999999999987643
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.9e-14 Score=112.17 Aligned_cols=118 Identities=15% Similarity=0.254 Sum_probs=68.6
Q ss_pred ECCeEEEEEEEeCCCc-------hhhhhhhH-------HhhccCCEE-----------EEEEeCCC-hhhHHHHH-HHHH
Q 043745 14 VEGRTIKAQIWDTAGQ-------ERYRAITS-------AYYRGALGA-----------LLVYDVTK-PTTFENVS-RWLK 66 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~ 66 (174)
.++..+.+.+|||+|+ +.|..++. .|+..++++ +++|++++ ..++..+. .|+.
T Consensus 90 ~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~ 169 (361)
T 2qag_A 90 ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMK 169 (361)
T ss_dssp --CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHH
T ss_pred cCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHH
Confidence 3555678999999999 67777776 777665543 35555554 44555553 4554
Q ss_pred HHHhhcCCCCeEEEEEeCCCCCCccCCCH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHHHh
Q 043745 67 ELRDHADSNIVIMMIGNKTDLKHLRAVAT--EDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIIS 136 (174)
Q Consensus 67 ~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~~ 136 (174)
.+ ...+|+|+|+||+|+...+++.. +++..++...+++++++||+++.+ ++.|.++.+.+....+
T Consensus 170 ~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 170 AI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred Hh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 43 24789999999999986554433 466677777789999999999999 8889999888876543
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.40 E-value=8.4e-13 Score=98.67 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=72.9
Q ss_pred EEEEEEeCCCc--------hhhhhhhHHhh----ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 19 IKAQIWDTAGQ--------ERYRAITSAYY----RGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 19 ~~l~l~D~~G~--------~~~~~~~~~~~----~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
..+.||||||. +.+......++ .++|++|+|+|+++... ...+.+|+..+......+.|+||++||.
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 56899999996 33433333333 89999999999985322 1222334333321111268999999999
Q ss_pred CCCCccC------CCHHHHHHHHHHhCCcEEEEeccC-----CCCHHHHHHHHHHHHHH
Q 043745 86 DLKHLRA------VATEDAQSYAEREGLSFIETSALE-----AINVEKAFQTILSEIYR 133 (174)
Q Consensus 86 Dl~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~v~~~l~~~i~~ 133 (174)
|+.+... ...+.++.+....+..++..++.. +.++.++++.+.+.+..
T Consensus 150 Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 150 DLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 9965311 011346777888887777666554 46788888777666543
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.40 E-value=2.8e-13 Score=109.66 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=76.9
Q ss_pred ECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q 043745 14 VEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TFE---NVSRWLKELRDHADSNIV-IMMIGNKTD 86 (174)
Q Consensus 14 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~D 86 (174)
++.....+.||||||+++|...+..++..+|++|+|+|+++.. +|+ ...+++..+... ++| +|+++||+|
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~D 156 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMD 156 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccc
Confidence 3444467999999999999999999999999999999998753 221 222333333322 455 999999999
Q ss_pred CCCc-cC---CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745 87 LKHL-RA---VATEDAQSYAEREG-----LSFIETSALEAINVEKA 123 (174)
Q Consensus 87 l~~~-~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v 123 (174)
+.+. .. ...++++.++..++ ++++++||++|.|+.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9731 11 12345666666666 58999999999998754
No 173
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.39 E-value=4.2e-14 Score=116.13 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=79.6
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC-CCHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA-VATED 97 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~ 97 (174)
..+.||||||++.|..++..++..+|++|||||+++....+....| ..+.. .++|+++++||+|+.+... ....+
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~ 127 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD---AHVPIVLAINKCDKAEADPEKVKKE 127 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT---TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH---cCCcEEEEEecccccccchHHHHHH
Confidence 3689999999999999999999999999999999986555443332 33322 3689999999999975321 11122
Q ss_pred HHHH---HHHh--CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 98 AQSY---AERE--GLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 98 ~~~~---~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
...+ +..+ .++++++||++|.|++++|+++...+
T Consensus 128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 2211 1122 24799999999999999999988765
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.35 E-value=5.2e-12 Score=106.47 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=57.8
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
...+....+.++||||+|+++|...+..+++.+|++++|+|+++...... ..|+..+... ++|+++++||+|+.
T Consensus 66 ~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 66 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred ceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 34444445789999999999999999999999999999999887644333 3444544442 68999999999986
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.35 E-value=7.6e-13 Score=100.26 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCeEEEEEEEeCCCch-------hhhhhh-------HHhhcc-------------CCEEEEEEeCCChhhHHHHHHHHHH
Q 043745 15 EGRTIKAQIWDTAGQE-------RYRAIT-------SAYYRG-------------ALGALLVYDVTKPTTFENVSRWLKE 67 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~-------~~~~~~-------~~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~ 67 (174)
++..+.+.||||||.. .+..+. ..|+.. +|+++++++.+...-...-..++..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 4555789999999973 333333 444443 7899999977653211222344555
Q ss_pred HHhhcCCCCeEEEEEeCCCCCCccCCC--HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 68 LRDHADSNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 68 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+.. .+|+|+|+||+|+....+.. .+.+.+.+...+++++.+||.++.|++++++++.+.
T Consensus 141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 533 68999999999986533221 123445556678999999999999999998887654
No 176
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.5e-13 Score=112.49 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=73.5
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.....+.||||||+++|...+..++..+|++|+|+|+++.. ++ ....+.+..+... + -.|+|+|+||+|+.+
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-g-i~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVD 319 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-T-CCEEEEEEECTTTTT
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-C-CCeEEEEEecccccc
Confidence 34467899999999999999999999999999999998742 11 1111222222222 1 245999999999975
Q ss_pred ccCCC----HHHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043745 90 LRAVA----TEDAQSYAEREG-----LSFIETSALEAINVEKA 123 (174)
Q Consensus 90 ~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~v 123 (174)
.+... .+++..++..++ ++++++||++|.|+.++
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 32211 233444555554 58999999999999876
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.32 E-value=2.1e-13 Score=111.19 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=75.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc--CC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP---TTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR--AV 93 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~ 93 (174)
..+.||||||++.|..++...+..+|++|+|||+++. ++.+.+ ..+.. .++|+++++||+|+.+.. .+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v 123 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRV 123 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCT
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHH
Confidence 4689999999999999999999999999999999883 343322 22222 268999999999996421 11
Q ss_pred CHH--HHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHH
Q 043745 94 ATE--DAQSYAEREG--LSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 94 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..+ +...++..++ ++++++||++|.|++++|+++..
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 000 0011122233 68999999999999999998764
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.31 E-value=6.4e-12 Score=100.40 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=83.3
Q ss_pred EEEEEEeCCCchh----hhhhhHH---hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQER----YRAITSA---YYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~----~~~~~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 89 (174)
..+.+||++|... +..+... .++.++.+++++|++ ...+..+..|..++..+.. ...|.++++||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 4578999999742 2222222 345799999999998 6677788778777665432 2578999999999976
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
. ...+++.+.+...+..++.+||++++|++++++++.+.+...
T Consensus 284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 3 223444555556678999999999999999999999887653
No 179
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.29 E-value=2.1e-12 Score=98.55 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=77.6
Q ss_pred EEEEEEeCCCch-------------hhhhhhHHhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 19 IKAQIWDTAGQE-------------RYRAITSAYYRGALGAL-LVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
..+.||||||.. .+..++..|++.++.++ +|+|+++..+......|+..+.. .+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---CCCeEEEEEEc
Confidence 578999999963 45677888999998777 79999875444443345554432 36899999999
Q ss_pred CCCCCccCCCHHHHHHHHHH--hC-CcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAER--EG-LSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
+|+.+......+..+..... .+ .+++++||+++.|++++++++.+...-.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 99976443223222210001 12 3578899999999999999988754433
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.28 E-value=4.6e-11 Score=101.08 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=57.5
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.++||||||+.+|...+..+++.+|++|+|+|+++..++.....|.. +... ++|+++++||+|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 4779999999999999999999999999999999999877776666643 3332 689999999999864
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.28 E-value=3e-11 Score=99.37 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=55.0
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.++...+.++||||||+.+|...+..++..+|++|+|+|+++..... ...++..+.. .++|+++++||+|+..
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~---~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 76 QFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL---RDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred EEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence 33334478999999999999988889999999999999998854322 2233333322 3689999999999864
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.23 E-value=1.3e-10 Score=98.57 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=55.7
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
..+.++||||||+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 348899999999999999999999999999999999987655544444 33322 3689999999999854
No 183
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.21 E-value=6.4e-11 Score=93.35 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=74.6
Q ss_pred CchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 043745 28 GQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----AE 103 (174)
Q Consensus 28 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 103 (174)
..++|.+++..+++.++++++|+|+++.+ ..|...+.+... +.|+++|+||+||.+. ....++..++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 56889999999999999999999999853 456666665544 7899999999999753 3334444443 56
Q ss_pred HhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745 104 REGL---SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 104 ~~~~---~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..|+ +++.+||+++.|++++++.+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6777 79999999999999999988653
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.19 E-value=7.7e-12 Score=98.24 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred EEEEEEeCCCchhh-------------hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 19 IKAQIWDTAGQERY-------------RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 19 ~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
..+.||||||..++ ..+...|+.++|++|+++|..+.+... ..|+..+......+.|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 35899999998776 667888999999999999876543322 334444444444568999999999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTI 127 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l 127 (174)
|+.+......+..+.+...+++.|+.+++.++.++++.+..+
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 997655555555555555667889999999988887665543
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.16 E-value=5.9e-10 Score=94.40 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=56.8
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
...++||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+... ++|+++++||+|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence 367899999999999999999999999999999999877776665553 34332 689999999999864
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.16 E-value=9.5e-11 Score=99.24 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=79.5
Q ss_pred EEEEEeCCCchhh---hhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH
Q 043745 20 KAQIWDTAGQERY---RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 20 ~l~l~D~~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
.+.||||||.... ...+..+++.+|++|||+|+++..+......|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 4899999997763 45667888999999999999988777776666544432 25789999999999654322111
Q ss_pred ----------HHHH-----HHHHh--------CCcEEEEecc--------------CCCCHHHHHHHHHHHHHH
Q 043745 97 ----------DAQS-----YAERE--------GLSFIETSAL--------------EAINVEKAFQTILSEIYR 133 (174)
Q Consensus 97 ----------~~~~-----~~~~~--------~~~~~~~Sa~--------------~~~~i~~v~~~l~~~i~~ 133 (174)
.... +.... ..+++++||+ ++.|+++++..+.+.+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 11111 1369999999 999999999999887654
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.15 E-value=2e-12 Score=107.62 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=58.9
Q ss_pred CeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEeCCCCC
Q 043745 16 GRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT---TF---ENVSRWLKELRDHADSNIV-IMMIGNKTDLK 88 (174)
Q Consensus 16 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 88 (174)
.....+.||||||+++|...+..++..+|++|||+|+++.. .+ ......+..+... ++| +|+|+||+|+.
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 33467899999999999988888899999999999998632 11 1111222222222 455 99999999996
Q ss_pred Ccc-CC---CHHHHHHHH-HHhCC-----cEEEEeccCCCCHH
Q 043745 89 HLR-AV---ATEDAQSYA-EREGL-----SFIETSALEAINVE 121 (174)
Q Consensus 89 ~~~-~~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 121 (174)
+.. .. ...++..+. ..+++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 521 11 123334444 44454 69999999999998
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.15 E-value=1.8e-10 Score=83.18 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=73.7
Q ss_pred EEEEEeCCCch----------hhhhhhHHhh---ccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 20 KAQIWDTAGQE----------RYRAITSAYY---RGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 20 ~l~l~D~~G~~----------~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
.+.+|||+|.. .+......++ ..++++++++|+++..++. .+..|+. . .++|+++++||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEec
Confidence 36899999974 2344444555 4789999999998865543 2333432 1 26899999999
Q ss_pred CCCCCcc--CCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 85 TDLKHLR--AVATEDAQSYAEREG--LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 85 ~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
+|+.... +...+.+..++...+ +.++++||+++.|++++++.+.+.+.
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 9986532 112344555555554 46889999999999999998877653
No 189
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=2.4e-10 Score=90.05 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH----H
Q 043745 27 AGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY----A 102 (174)
Q Consensus 27 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~ 102 (174)
..+++|.+++..++++++++++|+|+++.++ .|...+..... +.|+++|+||+||.+. ....+...++ +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence 3588999999999999999999999999763 34444444443 6899999999999753 2333444433 5
Q ss_pred HHhCC---cEEEEeccCCCCHHHHHHHHHHH
Q 043745 103 EREGL---SFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 103 ~~~~~---~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
...|+ .++.+||+++.|++++++.+.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 56676 68999999999999999988654
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.08 E-value=8.3e-10 Score=91.15 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=58.5
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+..+...++|+||||+.+|.......++-+|++|+|+|+...-.-+...-| .....+ ++|+++++||+|...
T Consensus 92 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 92 VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred eEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence 344444557899999999999999999999999999999999986544444445 333333 789999999999854
No 191
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.08 E-value=2.8e-10 Score=85.51 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=55.8
Q ss_pred EEECCeEEEEEEEeCCCchhhhhhhHHhhc---------cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEE
Q 043745 12 FQVEGRTIKAQIWDTAGQERYRAITSAYYR---------GALGALLVYDVTKPTTFENV-SRWLKELRDHADSN--IVIM 79 (174)
Q Consensus 12 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~pii 79 (174)
+.+++ ..+.||||||++++......+++ ++|+++||++++... +... ..|+..+......+ .|++
T Consensus 79 ~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i 155 (262)
T 3def_A 79 RTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTL 155 (262)
T ss_dssp EEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred EEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEE
Confidence 34444 57899999999887665554443 789999999998754 3333 46777776654422 4999
Q ss_pred EEEeCCCCCCccCCC
Q 043745 80 MIGNKTDLKHLRAVA 94 (174)
Q Consensus 80 lv~nK~Dl~~~~~~~ 94 (174)
+|+||+|+...+...
T Consensus 156 vv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 156 LVLTHAQFSPPDELS 170 (262)
T ss_dssp EEEECTTCCCSTTCC
T ss_pred EEEeCcccCCCCCcc
Confidence 999999996443333
No 192
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.06 E-value=4.7e-10 Score=86.15 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=69.0
Q ss_pred EEEEEEeCCCchh-------------hhhhhHHhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 19 IKAQIWDTAGQER-------------YRAITSAYYRGALGALLVYDVTKPTTF-ENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
..+.||||||... +......+++.+|++++|+|.++.... .....++..+. ..+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 4689999999753 566778889999999999997543211 11112333332 236899999999
Q ss_pred CCCCCccCCCHHHHHHHHHHhCCcEEEEecc---C---CCCHHHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQSYAEREGLSFIETSAL---E---AINVEKAFQTILSEIY 132 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~v~~~l~~~i~ 132 (174)
+|+........+..+.....++..++++++. + +.|+.++++.+.+.+.
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 9997544322222221111222556666654 4 6788888887766653
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.05 E-value=8e-10 Score=82.57 Aligned_cols=109 Identities=12% Similarity=-0.060 Sum_probs=69.4
Q ss_pred EEEEEEeCCCchhhhhhhH------HhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITS------AYYRGALGALLVYDVTKPTTFENV---SRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
+.+.||||+|+..+..... ..+.. +++++++|.....+.... ..+....... .+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence 4689999999987644322 24556 899999987643332222 1111111111 2589999999999875
Q ss_pred ccCCCHHHHHH----------------------------HHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 90 LRAVATEDAQS----------------------------YAEREG--LSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 90 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
..++ ++..+ ++..++ .+++++||+++.|++++++++.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 3321 11111 123443 47999999999999999999987764
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.02 E-value=3.2e-10 Score=82.61 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
..+.+|||+|+-.... .+....+.+++|+|+++.... ...+.. .. +.|+++|+||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence 4567888888511111 111257889999998765321 111211 11 468899999999965433456677
Q ss_pred HHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 99 QSYAEREG--LSFIETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 99 ~~~~~~~~--~~~~~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
..++..++ .+++++||+++.|++++|+++.+.+....
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 77776654 68999999999999999999988775543
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.00 E-value=3.1e-10 Score=88.95 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=70.7
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.||||+|... .....+..+|++++|+|....+.+..+..+ + .+.|+++|+||+|+...... ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~-~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEA-RLAA 239 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHH-HHHH
Confidence 5689999999543 233345889999999998766544332211 1 24689999999999653221 1112
Q ss_pred HHHHHH---h-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 99 QSYAER---E-------GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 99 ~~~~~~---~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.++... . +.+++++||+++.|++++++++.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222222 2 4689999999999999999999888765
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=9.7e-11 Score=89.93 Aligned_cols=114 Identities=13% Similarity=0.222 Sum_probs=65.5
Q ss_pred CCeEEEEEEEeCCCc-------hhhhhhhH-------HhhccC-------------CEEEEEEeCCChhhHHHHH-HHHH
Q 043745 15 EGRTIKAQIWDTAGQ-------ERYRAITS-------AYYRGA-------------LGALLVYDVTKPTTFENVS-RWLK 66 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~-------~~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~-~~~~ 66 (174)
++....+.+||++|. +.+..+.. .++... ++++|+.+.+. .+++.+. .++.
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~ 150 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMK 150 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHH
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHH
Confidence 344567899999998 55665554 555443 33555555332 1233332 2333
Q ss_pred HHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 67 ELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 67 ~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+ . ...++++|+||.|+...+++ ..+++.+++..++++++++||+++ |++++|.++.+.+...
T Consensus 151 ~l---~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 151 AI---H-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HH---T-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HH---H-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 32 2 35799999999999764332 345778888999999999999999 9999999999887643
No 197
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.96 E-value=1.9e-09 Score=81.32 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=54.4
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhH-------Hh--hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEEE
Q 043745 13 QVEGRTIKAQIWDTAGQERYRAITS-------AY--YRGALGALLVYDVTKPTTFENV-SRWLKELRDHADSN--IVIMM 80 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~~~~~~-------~~--~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piil 80 (174)
.++.....+.||||||+.++..... .+ ...+|+++||+|++.. ++... ..|+..+....+.+ .|+++
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence 3433446799999999976643222 22 2479999999998753 34333 46777776554322 69999
Q ss_pred EEeCCCCCCccCCCH
Q 043745 81 IGNKTDLKHLRAVAT 95 (174)
Q Consensus 81 v~nK~Dl~~~~~~~~ 95 (174)
|+||+|+.+.+....
T Consensus 160 V~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 160 ALTHAQFSPPDGLPY 174 (270)
T ss_dssp EEECCSCCCGGGCCH
T ss_pred EEECcccCCcCCCCH
Confidence 999999975443333
No 198
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.90 E-value=4.9e-09 Score=79.70 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=71.6
Q ss_pred eCCCch-hhhhhhHHhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHH
Q 043745 25 DTAGQE-RYRAITSAYYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSY 101 (174)
Q Consensus 25 D~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 101 (174)
..|||. .........++.+|++++|+|+.++.+.. .+..|+ .++|.++|+||+||.+... .+...++
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence 468876 45566677789999999999999987664 344442 2689999999999975211 2233444
Q ss_pred HHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHH
Q 043745 102 AEREGLSFIETSALEAINVEKAFQTILSEIYRI 134 (174)
Q Consensus 102 ~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~~ 134 (174)
.+..+++++.+||+++.|++++++.+.+.+...
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 455678999999999999999999887776544
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.90 E-value=2.1e-09 Score=92.82 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=59.6
Q ss_pred CCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 15 EGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 15 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
++..+.++||||||+.+|...+..+++.+|++|+|||+++..+++....|.... . .++|+++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 445789999999999999999999999999999999999988887766664432 2 268999999999986
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=2.8e-08 Score=77.91 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.0
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALE 116 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 116 (174)
.+|+++++|+.|..-......+.+++++...+.+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 489999999998642122345677888888899999999763
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=8.6e-10 Score=87.71 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~ 124 (174)
.+|+++++||.|+.. . ...+...+.....+.+++.+||+.+.++.+++
T Consensus 214 ~kP~i~v~NK~D~~~-~-~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-D-EQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSC-H-HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccc-h-HHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 489999999999862 1 11122333333336789999999888887653
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.7e-09 Score=86.41 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred EEEEEEEeCCCchhhh-------hh------------------hHHhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHh
Q 043745 18 TIKAQIWDTAGQERYR-------AI------------------TSAYYRGALGALLVYDVTKP-TTFENVS-RWLKELRD 70 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~-------~~------------------~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~ 70 (174)
...+.+||++|...+. .+ .+.++.++++.+++|..+.. .++..+. .|+..+.
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH- 165 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence 3478999999986541 11 12234455554455544432 3444443 5776664
Q ss_pred hcCCCCeEEEEEeCCCCCCccCCCH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 71 HADSNIVIMMIGNKTDLKHLRAVAT--EDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 71 ~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..+|+|+|+||+|+...+++.. .++..++...+++++++||+++.+++++|..+...
T Consensus 166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 2689999999999976555444 56777888889999999999999999877766543
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.80 E-value=2.9e-09 Score=89.45 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=57.1
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 11 DFQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 11 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.+..+...++|+|||||.+|.......++-+|++|+|+|+...-.-+...-| .....+ ++|.++++||+|...
T Consensus 59 ~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 59 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp CCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred eEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 344555567899999999999999999999999999999999875333332334 333343 688999999999753
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.77 E-value=8.8e-09 Score=80.30 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH--H
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT--E 96 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~ 96 (174)
+.+.||||+|...... .....+|++++|+|.+..+.+..+.. .. .+.|.++|+||+|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5689999999765433 24689999999999976543221111 11 1357899999999975322111 1
Q ss_pred HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 97 DAQSYAERE-------GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 97 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
+.+.....+ ..+++++||+++.|++++++++.+.+..
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222222 3468999999999999999999987653
No 205
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.76 E-value=5.6e-10 Score=87.41 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=67.3
Q ss_pred EEEEEEeCCCch-------------hhhhhhHHhhccCCEEEE-EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 043745 19 IKAQIWDTAGQE-------------RYRAITSAYYRGALGALL-VYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNK 84 (174)
Q Consensus 19 ~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 84 (174)
..+.||||||.. .+..+...|+..++.+|+ |.|++....-.....++..+ ...+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEecc
Confidence 568999999952 456677888877765555 55554322111222233333 3346899999999
Q ss_pred CCCCCccCCCHHHHHH--HHHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 85 TDLKHLRAVATEDAQS--YAEREG-LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 85 ~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
+|+.+.........+. +...++ .+++.+||+++.|++++++++.+.
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 9997543311221110 001123 256789999999999999988763
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.74 E-value=1.1e-07 Score=80.67 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=54.4
Q ss_pred eEEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 17 RTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 17 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
+.+.++|+|||||.+|.......++-+|++|+|+|+...-..+...-|.. .... ++|+++++||+|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence 46889999999999999999999999999999999987644443333433 3333 68999999999974
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=1.4e-07 Score=73.70 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=62.8
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.|+||+|.... .......+|.+++|+|+++.+....+.. .+ .+.|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 45789999995321 2344678999999999987543322211 11 14578899999999642111 1112
Q ss_pred HHHHHH----------hCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 99 QSYAER----------EGLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 99 ~~~~~~----------~~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
..+... ...+++.+||+++.|++++++++.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222221 13568999999999999999999887643
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.59 E-value=7.4e-08 Score=79.57 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=54.0
Q ss_pred EEEEEeCCCchh-----------hhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC
Q 043745 20 KAQIWDTAGQER-----------YRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK 88 (174)
Q Consensus 20 ~l~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 88 (174)
.+.||||||... |...+..++..+|++|+|+|+++.........|+..+... ..|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---EDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---GGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---CCCEEEEEECCCcc
Confidence 589999999875 5677788899999999999998755555556676665432 57999999999997
Q ss_pred Cc
Q 043745 89 HL 90 (174)
Q Consensus 89 ~~ 90 (174)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.43 E-value=7.2e-08 Score=82.04 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=68.9
Q ss_pred EEEEEeCCCchh-------------hhhhhHHhh-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 20 KAQIWDTAGQER-------------YRAITSAYY-RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 20 ~l~l~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.+.|+||||... +..+...|+ ..+|++++|+|+++.....+...++..+. ..+.|+|+|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 478999999533 334555555 47899999999987433222223333333 2368999999999
Q ss_pred CCCCccCCCHHHHHH-H-HHHhC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043745 86 DLKHLRAVATEDAQS-Y-AEREG-LSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
|+.+........... + ...++ .+++.+||+++.|++++++.+.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 997644332221110 0 00113 357789999999999999887763
No 210
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=2.3e-07 Score=71.28 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred hhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC--CHHHHHHHHHHhCCcE
Q 043745 33 RAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV--ATEDAQSYAEREGLSF 109 (174)
Q Consensus 33 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 109 (174)
..+.+..+.++|.+++|+|+.+++ +...+.+++..... .++|++||.||+||.+.... ..+...++....|+++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 344556789999999999998764 44455565544332 36899999999999763210 1233444555678999
Q ss_pred EEEeccCCCCHHHHHH
Q 043745 110 IETSALEAINVEKAFQ 125 (174)
Q Consensus 110 ~~~Sa~~~~~i~~v~~ 125 (174)
+.+||.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999998887665544
No 211
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.41 E-value=1.9e-07 Score=70.20 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=62.3
Q ss_pred CCCchhh-hhhhHHhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH
Q 043745 26 TAGQERY-RAITSAYYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 26 ~~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 102 (174)
.|||... .......++++|++++|+|+.++.+... +. |+ ++|.++|+||+||.+... .+...++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 4676532 3456667899999999999998766542 12 21 589999999999975311 22334445
Q ss_pred HHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 103 EREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 103 ~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
+..|+++ .+||+++.|++++++.+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5668888 9999999999999887654
No 212
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.38 E-value=1.4e-06 Score=68.58 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=36.7
Q ss_pred CCeEEEEEeCCCCC--Cc-cCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043745 75 NIVIMMIGNKTDLK--HL-RAVATEDAQSYAEREGLSFIETSALEAINVEKAF 124 (174)
Q Consensus 75 ~~piilv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~ 124 (174)
.+|+++++||.|.. +. +....+.+++++...+.+++++||+...++.++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS 253 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence 37999999999742 21 1234577888888889999999998765555443
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.37 E-value=1e-06 Score=68.46 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
.+.+.|+||+|...-. ......+|.+++++|....+..+.+..++ . +.+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 3568999999975322 22357899999999986543222221111 1 23556777999975322222222
Q ss_pred HHHHHHHh----------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043745 98 AQSYAERE----------GLSFIETSALEAINVEKAFQTILSEIY 132 (174)
Q Consensus 98 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~v~~~l~~~i~ 132 (174)
.+.+...+ ..+++.+||+++.|++++++.+.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33333321 346899999999999999999888654
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.32 E-value=6.4e-07 Score=65.13 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=47.5
Q ss_pred CeEEEEEeCCCCCCccCCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043745 76 IVIMMIGNKTDLKHLRAVATEDAQSYAERE--GLSFIETSALEAINVEKAFQTILSEIYR 133 (174)
Q Consensus 76 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~v~~~l~~~i~~ 133 (174)
.|.++|+||+|+.+.+....++...++..+ +.+++++||+++.|++++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 567999999999764445677777777765 5789999999999999999999887643
No 215
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.27 E-value=9.2e-06 Score=63.99 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=54.8
Q ss_pred EECCeEEEEEEEeCCCchhh----hhh---hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEe
Q 043745 13 QVEGRTIKAQIWDTAGQERY----RAI---TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD--SNIVIMMIGN 83 (174)
Q Consensus 13 ~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~n 83 (174)
.+++ .+++|+||||...- ... .-..++.+|++++|+|+.++.. ....+..++..... ...|.+++.|
T Consensus 115 ~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~n 190 (376)
T 4a9a_A 115 RYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIK 190 (376)
T ss_dssp EETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEE
T ss_pred EeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhh
Confidence 4455 56899999996421 111 2234578999999999998632 22222223322211 3567888999
Q ss_pred CCCCCC--------ccCCCHHHHHHHHHHhCC
Q 043745 84 KTDLKH--------LRAVATEDAQSYAEREGL 107 (174)
Q Consensus 84 K~Dl~~--------~~~~~~~~~~~~~~~~~~ 107 (174)
|.|... ....+.++.+.+...+.+
T Consensus 191 K~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 191 KKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp ECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred HhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 999632 123556677766666554
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.19 E-value=6.4e-06 Score=64.47 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=58.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCC-CHHHHHHHHHHhCCcEEEEeccCC
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAV-ATEDAQSYAEREGLSFIETSALEA 117 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 117 (174)
...++|.+++|....-..+...+.+++...... ++|++||+||+||.+.... ..++........|++++.+||.++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 367999999887764333455566665544333 5788999999999753210 011223333456899999999999
Q ss_pred CCHHHHHHHH
Q 043745 118 INVEKAFQTI 127 (174)
Q Consensus 118 ~~i~~v~~~l 127 (174)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887643
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.54 E-value=4.3e-05 Score=60.52 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=24.0
Q ss_pred EEEEEeCCCchhhhh-------hhHHhhccCCEEEEEEeCCChhh
Q 043745 20 KAQIWDTAGQERYRA-------ITSAYYRGALGALLVYDVTKPTT 57 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s 57 (174)
.+.|||++|...+.+ .+..+++++|++++|+|+.+.++
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 489999999887544 45677899999999999986443
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.49 E-value=0.00092 Score=52.90 Aligned_cols=42 Identities=7% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCCC--CccCCCHHHHHHHHHHhC--CcEEEEeccC
Q 043745 75 NIVIMMIGNKTDLK--HLRAVATEDAQSYAEREG--LSFIETSALE 116 (174)
Q Consensus 75 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 116 (174)
..|+++++|+.|.. .......+.+++++...+ .+++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 38999999999832 112233677888887766 7899999875
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.19 E-value=0.0006 Score=55.68 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=61.1
Q ss_pred EEEEEEeCCCchhhh-hhh---HHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCCCcc
Q 043745 19 IKAQIWDTAGQERYR-AIT---SAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGNKTDLKHLR 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~ 91 (174)
+.+.|+||+|..... .++ ... +-.+|.++||+|+......... ...+.. .+|+ ++|.||.|.....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~----~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD----KVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH----HHCCCCEEEECTTSCCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh----hcCceEEEEeCCccccch
Confidence 568999999976321 111 111 2278999999999875432221 222222 1464 7889999986422
Q ss_pred CCCHHHHHHHHHHhCCcE------------------EEEeccCCCC-HHHHHHHHHHH
Q 043745 92 AVATEDAQSYAEREGLSF------------------IETSALEAIN-VEKAFQTILSE 130 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~v~~~l~~~ 130 (174)
. ........++.++ +.+|+..|.| +.++++++.+.
T Consensus 257 g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 G----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp T----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred H----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 1223344555544 3468888888 88888887655
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.036 Score=44.45 Aligned_cols=86 Identities=19% Similarity=0.092 Sum_probs=52.5
Q ss_pred EEEEEEeCCCchhhhh-----hhH-HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA-----ITS-AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-----~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|...... +.. .....+|.++||+|+...+..... ...+... -.+..+|.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCccc--
Confidence 4578999999643211 111 122367999999999875433222 2333322 2345678899998642
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043745 93 VATEDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa 114 (174)
...+.......+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23455566678899888875
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.71 E-value=0.043 Score=38.55 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=54.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCCCccCCCHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA--DSNIVIMMIGNKTDLKHLRAVATE 96 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~ 96 (174)
+.+.|+|+++.. .......+..+|.++++...+... ..+..++..+.... ..+.++.+|.|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 457899999766 334455667799999999876543 55666666665433 235678999999985431 123
Q ss_pred HHHHHHHHhCCcEE
Q 043745 97 DAQSYAEREGLSFI 110 (174)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (174)
+..++.++++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555556665544
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.45 E-value=0.085 Score=39.95 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=56.4
Q ss_pred EEEEEEeCCCchh--hhh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCC
Q 043745 19 IKAQIWDTAGQER--YRA-ITS-----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 89 (174)
+.+.|+||+|... ... +.. .....+|.+++|+|+...... ......+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4579999999876 321 111 124478999999998753222 122222222 244 667889999753
Q ss_pred ccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745 90 LRAVATEDAQSYAEREGLSFIETSALEAINVEK 122 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 122 (174)
.......++...+.++.+++ +|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 13345567778889988876 5666654
No 223
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.41 E-value=0.00077 Score=52.86 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=50.9
Q ss_pred EEEEeCCCchhhh--------hhhHHhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 21 AQIWDTAGQERYR--------AITSAYY--RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 21 l~l~D~~G~~~~~--------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
+.++||||..... .....++ +..+.++++++....--+..+. .+......+.|+++++||.|....
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCccccc
Confidence 6899999954221 1122222 6789999999974321111110 011122246899999999998653
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccC
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALE 116 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~ 116 (174)
... ......+.+.+|..+...++..
T Consensus 290 ~~~-~~~~~~~~~~~g~~l~p~~~~~ 314 (369)
T 3ec1_A 290 TKL-EKADSLYANQLGELLSPPSKRY 314 (369)
T ss_dssp EEG-GGHHHHHHHHBTTTBCSSCGGG
T ss_pred ccH-HHHHHHHHHhcCCccCCCCchh
Confidence 222 3334455566666555555543
No 224
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.03 E-value=0.31 Score=35.01 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=57.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.|+|+++... ......+..+|.++++...+ ..++..+..++..+.........+.+|.|+.+... ....
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 4578999987542 24455677899999998864 56677777777777655433456788899998653 2333
Q ss_pred HHHHHHhCCcEEEE
Q 043745 99 QSYAEREGLSFIET 112 (174)
Q Consensus 99 ~~~~~~~~~~~~~~ 112 (174)
+.+.+.++.+++.+
T Consensus 191 ~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 191 DEIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHHTSCEEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 34455678777654
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.20 E-value=0.16 Score=40.68 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=54.4
Q ss_pred EEEEEEeCCCchh--hh----hhhHH--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQER--YR----AITSA--YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~--~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
+.+.|+||+|... .. ..... ..-..+.++||+|+...+..... ...+.... .+..+|.||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhccc---CCcEEEEecccccc-
Confidence 4577999999644 11 11111 11256899999999875433222 23333221 35678899999753
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043745 91 RAVATEDAQSYAEREGLSFIETSALEAINV 120 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 120 (174)
............+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 234455666678999988875 5543
No 226
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.17 E-value=0.45 Score=33.75 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=54.2
Q ss_pred EEEEEEeCCCc-hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHH
Q 043745 19 IKAQIWDTAGQ-ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATED 97 (174)
Q Consensus 19 ~~l~l~D~~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 97 (174)
+.+.++|+++. .. ......+..+|.+|++...+ ..++..+...+..+.... +.++.+|.|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 44789999876 42 23344567899999998864 455666666666665532 4568899999986430 11344
Q ss_pred HHHHHHHhCCcEE
Q 043745 98 AQSYAEREGLSFI 110 (174)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (174)
..+..++++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555665544
No 227
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.10 E-value=1.5 Score=32.70 Aligned_cols=84 Identities=11% Similarity=0.199 Sum_probs=54.2
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEE-EEEeCCCCCCccCCCHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIM-MIGNKTDLKHLRAVATE 96 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-lv~nK~Dl~~~~~~~~~ 96 (174)
+.+.|+|+++.-.... ....+..+|.+|++...+ ..++..+..++..+.... ..+.+++ +|.|+.+-. .
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~ 227 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 227 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------H
Confidence 5578999977543221 233457899999998754 456666666666665432 1356655 889999832 3
Q ss_pred HHHHHHHHhCCcEEE
Q 043745 97 DAQSYAEREGLSFIE 111 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (174)
..+++.+.++.+++.
T Consensus 228 ~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 228 EVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCcee
Confidence 466667777776654
No 228
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.99 E-value=0.79 Score=33.38 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCeEE-EEEeCCCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVIM-MIGNKTDLK 88 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pii-lv~nK~Dl~ 88 (174)
.+.+.|+|+++.... .....+..+|.+|++...+. .++..+..+ +..+......+.+++ +|.|+.|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 355789999876432 23344567999999998764 344444443 333333223356764 889999864
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.94 E-value=1.1 Score=35.74 Aligned_cols=83 Identities=18% Similarity=0.057 Sum_probs=48.8
Q ss_pred EEEEEEeCCCchhhhh-h---hHH--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEeCCCCCCc
Q 043745 19 IKAQIWDTAGQERYRA-I---TSA--YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNI-V-IMMIGNKTDLKHL 90 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-~---~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iilv~nK~Dl~~~ 90 (174)
+.+.|+||+|...... + ... .+..+|.++||+|+..... .......+ .. .+ | ..+|.||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence 4679999999764321 1 111 1226899999999876542 11122222 21 34 5 7889999998531
Q ss_pred cCCCHHHHHHHHHHhCCcEEEE
Q 043745 91 RAVATEDAQSYAEREGLSFIET 112 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~ 112 (174)
......+....+.++.++
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 123344666777776655
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.87 E-value=0.55 Score=34.40 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCC----cc-
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKH----LR- 91 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~----~~- 91 (174)
.+.+.|+|+++...........+..+|.+|++...+. .+...+...+..+... +.+++ +|.|+.|... .+
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 203 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKS 203 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCccccccc
Confidence 3567899998754322111122236899999987653 4556666666655543 45666 8899987421 11
Q ss_pred CC-CHHHHHHHHHHhCCcEEE
Q 043745 92 AV-ATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 92 ~~-~~~~~~~~~~~~~~~~~~ 111 (174)
.+ ......++.+.++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 204 YIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CTTCCCCHHHHHHHTTCSEEE
T ss_pred ccccccHHHHHHHHcCCCeEE
Confidence 11 122355667778887664
No 231
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.67 E-value=0.77 Score=33.54 Aligned_cols=64 Identities=9% Similarity=-0.047 Sum_probs=44.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
+.+.|+|+++... ......+..+|.+|++...+ ..+...+...+..+..... +.++.+|.|+.+
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNL-FLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTC-CCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhc-cCCEEEEEeccc
Confidence 4578999987542 23445566799999999874 4566666666666655533 567889999994
No 232
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.51 E-value=2.3 Score=30.78 Aligned_cols=83 Identities=10% Similarity=-0.017 Sum_probs=53.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.|+|+++... ......+..+|.+|++...+ ..+...+...+..+.... ...+-+|.|+.+..... ...
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGIE----MAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTHH----HHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccccc----chH
Confidence 4578999987543 33444567899999998754 445666666666665542 24566888999864321 345
Q ss_pred HHHHHHhCCcEE
Q 043745 99 QSYAEREGLSFI 110 (174)
Q Consensus 99 ~~~~~~~~~~~~ 110 (174)
.++.+.++.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 555666776644
No 233
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.31 E-value=0.38 Score=34.87 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=45.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD------SNIVIMMIGNKTDL 87 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------~~~piilv~nK~Dl 87 (174)
+.+.|+|+++... ......+..+|.+|++.+.+ ..++..+..++..+..... ....+.+|.|+.|.
T Consensus 114 yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 114 FEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 5578999987543 34555667899999999864 4566666666666544321 12577889999985
No 234
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.07 E-value=2.4 Score=30.06 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=52.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDA 98 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 98 (174)
+.+.|+|+++... ......+..+|.+|++...+ ..++..+...+..+.... ...+.+|.|+.+..... ...
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~ 182 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSDRD----IPP 182 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCTTC----CCH
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcccch----hHH
Confidence 4578999987543 33445667899999998864 456666666666665542 24566788999864322 123
Q ss_pred HHHHHHhCCcEE
Q 043745 99 QSYAEREGLSFI 110 (174)
Q Consensus 99 ~~~~~~~~~~~~ 110 (174)
.++.+.++.+++
T Consensus 183 ~~~~~~~~~~~~ 194 (237)
T 1g3q_A 183 EAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHCSCEE
T ss_pred HHHHHHhCccce
Confidence 344455676654
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.67 E-value=4.9 Score=31.78 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=56.5
Q ss_pred EEEEEeCCCchhh----hhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC------
Q 043745 20 KAQIWDTAGQERY----RAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK------ 88 (174)
Q Consensus 20 ~l~l~D~~G~~~~----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------ 88 (174)
.+.+||++|.... .... ..-+...+.+++ ++....+ -+++ .+...+... +.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~~---~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISMM---KKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHHT---TCEEEEEECCHHHHHHHHHT
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHhc---CCCeEEEEecCcccccCccc
Confidence 4789999885321 1111 112334566665 7776211 1111 122223332 57999999999862
Q ss_pred -CccCCCHHH----HHHHH----HHhC---CcEEEEec--cCCCCHHHHHHHHHHHH
Q 043745 89 -HLRAVATED----AQSYA----EREG---LSFIETSA--LEAINVEKAFQTILSEI 131 (174)
Q Consensus 89 -~~~~~~~~~----~~~~~----~~~~---~~~~~~Sa--~~~~~i~~v~~~l~~~i 131 (174)
.-......+ ++++. .+.+ -.++.+|+ ..+.|++++.+.+.+.+
T Consensus 195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 101122232 33332 1222 25788999 66667999888887664
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.10 E-value=1.9 Score=30.67 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=43.5
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.+.|+|+++.... .....+..+|.+|++...+ ..++..+..+...+..... ..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLGI--KKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHTC--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcCC--ccEEEEEeCCC
Confidence 355789999875432 4455568899999999874 4566666665554444432 45778889998
No 237
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.64 E-value=3.6 Score=30.41 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=46.8
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCeE-EEEEeCCCCCCccCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRW---LKELRDHADSNIVI-MMIGNKTDLKHLRAVA 94 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~~~ 94 (174)
+.+.|+|+++..... ....+..+|.+|++...+. .++..+... +..+......+.++ -+|.|+.|.... ..
T Consensus 155 yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~--~~ 229 (298)
T 2oze_A 155 YDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSA--TI 229 (298)
T ss_dssp CSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCH--HH
T ss_pred CCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcH--HH
Confidence 457899998765332 2223446999999988653 344444443 33332222235674 488899986431 12
Q ss_pred HHHHHHHHHHhC
Q 043745 95 TEDAQSYAEREG 106 (174)
Q Consensus 95 ~~~~~~~~~~~~ 106 (174)
....+++.+.++
T Consensus 230 ~~~~~~~~~~~~ 241 (298)
T 2oze_A 230 KSNLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 234445555554
No 238
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=85.57 E-value=0.033 Score=43.56 Aligned_cols=88 Identities=8% Similarity=0.046 Sum_probs=47.9
Q ss_pred EEEEeCCCchhhhh--------hhHHh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCc
Q 043745 21 AQIWDTAGQERYRA--------ITSAY--YRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHL 90 (174)
Q Consensus 21 l~l~D~~G~~~~~~--------~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 90 (174)
+.++||||...... ....+ .+..+.++|+++....--+..+ ..+........|+++++||.|....
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccccc
Confidence 68999999643211 11222 2577889999887422111111 0011122246899999999998653
Q ss_pred cCCCHHHHHHHHHHhCCcEEEEe
Q 043745 91 RAVATEDAQSYAEREGLSFIETS 113 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~S 113 (174)
.. .......+.+.+|..+...+
T Consensus 289 ~~-~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 289 TK-LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp EE-HHHHHHHHHHHBTTTBCSSC
T ss_pred cc-HHHHHHHHHHHhCCccCCCc
Confidence 22 23334445555665544444
No 239
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=83.64 E-value=1.8 Score=32.04 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH---HHH-------------H---HHHHhh-cCCC-Ce
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV---SRW-------------L---KELRDH-ADSN-IV 77 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~-------------~---~~i~~~-~~~~-~p 77 (174)
+.+.|+|+++.. .......+..+|.+|++...+. .++..+ ..+ + ..+... .... .+
T Consensus 104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 457899998865 3445566788999999998753 222211 111 2 222222 0225 67
Q ss_pred EEEEEeCCCCCC
Q 043745 78 IMMIGNKTDLKH 89 (174)
Q Consensus 78 iilv~nK~Dl~~ 89 (174)
+.+|.|+.|...
T Consensus 181 ~~vV~N~~~~~~ 192 (286)
T 2xj4_A 181 WVVLRNRLATTE 192 (286)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEEeeecCCC
Confidence 889999998643
No 240
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.37 E-value=11 Score=27.25 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=52.6
Q ss_pred EEEEEEeCCCchhhhhhh-HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEeCCCCCCccCCCH
Q 043745 19 IKAQIWDTAGQERYRAIT-SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVI-MMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ilv~nK~Dl~~~~~~~~ 95 (174)
+.+.|+|++|......+. ......+|.+|++...+ ..++..+...+..+..... .+.++ -+|.|+.+.. ...
T Consensus 116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~ 190 (269)
T 1cp2_A 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence 557899998754322221 12224699999998864 4556666555565554332 24554 5788998632 234
Q ss_pred HHHHHHHHHhCCcEE
Q 043745 96 EDAQSYAEREGLSFI 110 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (174)
+....+.+.++.+++
T Consensus 191 ~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 191 ELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCccc
Confidence 556666777777655
No 241
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=83.20 E-value=6.8 Score=30.10 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=27.4
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENV 61 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 61 (174)
.+.+.|+|+++.- .......+..+|.+|++...+ ..++..+
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~ 193 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAF 193 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHH
Confidence 3567999998754 334445566799999999875 3444333
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.98 E-value=13 Score=29.60 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=46.3
Q ss_pred EEEEEEeCCCchhhhh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCCCcc
Q 043745 19 IKAQIWDTAGQERYRA-ITS-----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLKHLR 91 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 91 (174)
+.+.|+||+|...... +.. ..+..++.+++|+|+........ ....+.. .++ .-+|.||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc----cCCCeEEEEecCCCCccH
Confidence 4578999999754321 111 12346899999999875433222 2222222 133 33678999975321
Q ss_pred CCCHHHHHHHHHHhCCcEEEE
Q 043745 92 AVATEDAQSYAEREGLSFIET 112 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ 112 (174)
.....+....+.++.++
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 23345566667664443
No 243
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=80.58 E-value=5.1 Score=29.51 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=40.8
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM-MIGNKTDLKH 89 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~ 89 (174)
+.+.|+|+++.-... ........+|.+|+|..... .+...+...+..+... +.+++ +|.|+.|...
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPKDK 258 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC--
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCCC
Confidence 357899998854321 12233456899999998754 3455555555555443 45655 8889998643
No 244
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=79.36 E-value=4.2 Score=31.77 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSE 130 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~ 130 (174)
..|++++.||+|... .++...+.+ .-.++++|+..+.|++.+.+.+.+.
T Consensus 249 ~~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~ 297 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDR 297 (376)
T ss_dssp EECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHH
Confidence 579999999999743 344433322 2357889999999988776655544
No 245
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.03 E-value=16 Score=26.66 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCchhhhhh-hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe-EEEEEeCCCCCCccCCC
Q 043745 18 TIKAQIWDTAGQERYRAI-TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIV-IMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~~~ 94 (174)
.+.+.|+|++|......+ .......+|.+|++...+ ..++..+...+..+..... .+.+ +-+|.|+.+.. ..
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hH
Confidence 356789999875422222 122235799999988864 4556655555555544321 2455 45778998632 12
Q ss_pred HHHHHHHHHHhCCcEE
Q 043745 95 TEDAQSYAEREGLSFI 110 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~ 110 (174)
.+....+.+.++.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 3445566667776654
No 246
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=78.08 E-value=14 Score=25.29 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=48.6
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCCeEEEEEeCCCCCCccCCCH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD---HADSNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piilv~nK~Dl~~~~~~~~ 95 (174)
+.+.++|....+ ...+..+|++||....-...-...++.|+..+.. ....+.++.++++--.-........
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l 108 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVAC 108 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHH
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCCCCCCHHHHH
Confidence 456677764432 2345679999999988765444556777777654 1224688888888543322111112
Q ss_pred HHHHHHHHHhCCc
Q 043745 96 EDAQSYAEREGLS 108 (174)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (174)
.+........|+.
T Consensus 109 ~~l~~~l~~~g~~ 121 (188)
T 2ark_A 109 MSILTMLMNFGFL 121 (188)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCcE
Confidence 3344444556654
No 247
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=76.37 E-value=4.2 Score=33.80 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=35.3
Q ss_pred EEEEEeCCCch-------------hhhhhhHHhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 043745 20 KAQIWDTAGQE-------------RYRAITSAYYRGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKT 85 (174)
Q Consensus 20 ~l~l~D~~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~ 85 (174)
.+.|.|.||.. ....+...|+.....+++++-..+.+ .-..+..+...+ .....+.|+|.||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV---DPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH---CSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH---hhcCCceEEEecch
Confidence 37899998522 23345566655554444444333322 111222333333 33457899999999
Q ss_pred CCC
Q 043745 86 DLK 88 (174)
Q Consensus 86 Dl~ 88 (174)
|+.
T Consensus 225 Dlv 227 (608)
T 3szr_A 225 DLV 227 (608)
T ss_dssp GGS
T ss_pred hhc
Confidence 974
No 248
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.68 E-value=7.9 Score=29.50 Aligned_cols=91 Identities=13% Similarity=0.055 Sum_probs=52.6
Q ss_pred EEEEeCCCchhhhhh----hHH--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC
Q 043745 21 AQIWDTAGQERYRAI----TSA--YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA 94 (174)
Q Consensus 21 l~l~D~~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~ 94 (174)
+.+.|++|....... ... ..-..|-.+++.|....+ ++...+..+.... + ..+++.||.|-.. +
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~a-~--- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDADA-R--- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGCS-C---
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCcc-c---
Confidence 457999987432211 111 112478899999987653 2222333333222 2 2356779999632 1
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 95 TEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
.-.....+...+.++.+++ +|++++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2345567788899988887 66666544
No 249
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=73.84 E-value=15 Score=28.46 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=36.4
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChh------hHHHHHHHHHHHHhhcC-CCC-eEEEEEeCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPT------TFENVSRWLKELRDHAD-SNI-VIMMIGNKTD 86 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~i~~~~~-~~~-piilv~nK~D 86 (174)
+.+.|+|+++.-. ......+..+|.+|++...+... .+..+...+..+..... ..+ -++.+.|+.+
T Consensus 248 yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 248 YDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp CSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred CCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 4578999987553 33444556899999999875321 12223333444444322 122 2566778887
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.75 E-value=24 Score=27.98 Aligned_cols=85 Identities=18% Similarity=0.087 Sum_probs=47.6
Q ss_pred EEEEEEeCCCchhhhh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA-ITS-----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+||+|...... ... ...-.+|.++||+|+...+... .....+.... + ..-+|.||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av---~~a~~f~~~l--~-i~GVIlTKlD~~~~-- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKV--G-VTGLVLTKLDGDAR-- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH---HHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHH---HHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence 4578999999753321 111 1122588999999987532221 2222232211 1 24567899986431
Q ss_pred CCHHHHHHHHHHhCCcEEEEe
Q 043745 93 VATEDAQSYAEREGLSFIETS 113 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~S 113 (174)
...........+.++.++.
T Consensus 253 --~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE
T ss_pred --HHHHHHHHHHHCCCEEEEe
Confidence 1244456677888877765
No 251
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=72.61 E-value=9.3 Score=26.42 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=42.1
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHH-HHHHHHHHhCCcEE
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATE-DAQSYAEREGLSFI 110 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 110 (174)
..+..+|++||+...-+..-...++.|+..+......++|++++++ ..-... ....+ .++.+...+|..++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~-~~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAH-VLALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGG-GGHHHHTHHHHHHTTTCSEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcch-hhHHHHHHHHHHHHcCCEec
Confidence 4467899999999887643333445555554322224789999988 332221 11122 46677777776543
No 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=72.60 E-value=1.7 Score=34.58 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=31.9
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCH--HHHHHHHHHhCCcEEEEec
Q 043745 45 GALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVAT--EDAQSYAEREGLSFIETSA 114 (174)
Q Consensus 45 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa 114 (174)
+++|+.|....-+..+ ..++..+. ..+|+|+|.||+|.....++.. ..+..-....|+.++.+|.
T Consensus 151 ~v~fI~d~~~~l~~~D-ieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD-LVTMKKLD----SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHH-HHHHHHTC----SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHH-HHHHHHHh----hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 3666667654332222 12333332 3789999999999764322110 1111112234567776664
No 253
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=72.16 E-value=15 Score=25.02 Aligned_cols=74 Identities=7% Similarity=-0.046 Sum_probs=43.0
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
...+..+|++||....-...-...++.|+..+... ...++++.++++--............++.++..+|+.++
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34567899999999876643333455555554321 124678888887553322111223456666667776544
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.31 E-value=32 Score=25.92 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=52.3
Q ss_pred EEEEEEeCCCchhhhh-hh------HHhh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCC
Q 043745 19 IKAQIWDTAGQERYRA-IT------SAYY-----RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKT 85 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~-~~------~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 85 (174)
+.+.|+||+|...... +. ...+ ..+|.+++|.+.... .+.+.. +..... ..+ .-+|.||.
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~-~~~i~GvVltk~ 264 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSK-VADVSGIILTKM 264 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTT-TSCCCEEEEECG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhh-cCCCcEEEEeCC
Confidence 4578999999765321 11 1111 247899999998743 222222 222221 222 34678999
Q ss_pred CCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 86 DLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 86 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
|.... ......+...+++|+.++. .|+.++++
T Consensus 265 d~~~~----~g~~~~~~~~~~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 265 DSTSK----GGIGLAIKELLNIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp GGCSC----TTHHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred CCCCc----hhHHHHHHHHHCcCEEEEe--CCCCcccc
Confidence 96432 1255667778899987765 45555443
No 255
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=68.39 E-value=8.3 Score=30.78 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=35.2
Q ss_pred EEEEeCCCch--hhhhhh--------HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 043745 21 AQIWDTAGQE--RYRAIT--------SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH 71 (174)
Q Consensus 21 l~l~D~~G~~--~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 71 (174)
..+||..|.+ +++..+ ..++...++.++|+|.++. +......|+..+...
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4678998873 333333 5667678899999999987 556667777766554
No 256
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=66.87 E-value=30 Score=25.60 Aligned_cols=66 Identities=17% Similarity=0.035 Sum_probs=41.1
Q ss_pred EEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCC
Q 043745 20 KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKH 89 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 89 (174)
.+.|+|+|+...... .......+|++|+|..... .+...+...+..+.... -..+-+|.|+.|...
T Consensus 203 D~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG--IPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT--CCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC--CCEEEEEEcCccccc
Confidence 478999987643221 2334567999999998764 34455555555555443 223556789998654
No 257
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=66.33 E-value=16 Score=27.18 Aligned_cols=65 Identities=20% Similarity=0.036 Sum_probs=38.2
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIV-IMMIGNKTDLK 88 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 88 (174)
+.+.|+|+++...... .......+|.+|+|...... +...+...+..+... +.+ +-+|.|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA---GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT---TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC---CCCeEEEEEeCCccC
Confidence 3478999987643211 22234678999999886532 334444445555443 233 33677999865
No 258
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=65.95 E-value=15 Score=25.22 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=44.3
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
..+..+|++||....-...-...++.|+..+... ...++++.++++--............++.++..+|+.++.
T Consensus 66 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 66 DDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 3567899999999876643333455565554221 1246788888775443221223345677777888876553
No 259
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=65.28 E-value=6.4 Score=29.02 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred cCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCC--HHHHHHHHHHhCCcEEE
Q 043745 42 GALGALLVYDVT-KPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVA--TEDAQSYAEREGLSFIE 111 (174)
Q Consensus 42 ~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~ 111 (174)
.+++.+++.|.. ..-+-.+ ...+..+.. .+++|+|.+|.|.....+.. ....+......++.++.
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 368888888854 2211111 233344432 28999999999976532211 12233334555666553
No 260
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=63.21 E-value=30 Score=28.14 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=50.5
Q ss_pred EEEEEeCCCchhhhh----hhHHh---h-----ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 20 KAQIWDTAGQERYRA----ITSAY---Y-----RGALGALLVYDVTKPTT-FENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~----~~~~~---~-----~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.|+||+|...... ..... . ...+-++|+.|.+..+. +.. +..+.... ++. .+|+||.|
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~~--~it-gvIlTKLD 449 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEAV--GLT-GITLTKLD 449 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHHT--CCS-EEEEECGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhhc--CCC-EEEEEcCC
Confidence 467899999743221 11111 1 12567899999876532 222 22333222 233 45779998
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
-.. + .-.+..++..+++++.++. +|++++++
T Consensus 450 ~ta-k---gG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 GTA-K---GGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp GCS-C---CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred Ccc-c---ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 532 1 2346677778899988764 56555543
No 261
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=62.75 E-value=14 Score=24.90 Aligned_cols=74 Identities=8% Similarity=-0.084 Sum_probs=44.3
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
+...+..+|++||....-+..-...++.|+..+....-.++|+.++++--.-.. .......++..+..+++.++
T Consensus 57 ~~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 57 LKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEe
Confidence 334567899999999887654444455555544221124688888886543211 11224567777788887554
No 262
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=61.22 E-value=9.8 Score=28.92 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=36.2
Q ss_pred HhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043745 69 RDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILS 129 (174)
Q Consensus 69 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~ 129 (174)
..+.....|+||+ +|-|.. .++..+.+++.+++++.++..+...+..+..++..
T Consensus 74 er~l~~~~P~IIl-trg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 74 RKLCRPETPAIIV-TRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp HHHCCTTCCCEEE-CTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEE-eCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHH
Confidence 3333346777654 777765 34677888999999998887766666666555443
No 263
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=61.20 E-value=36 Score=23.24 Aligned_cols=64 Identities=5% Similarity=-0.015 Sum_probs=39.9
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh--------cCCCCeEEEEEeCC
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH--------ADSNIVIMMIGNKT 85 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~piilv~nK~ 85 (174)
+.+.|.....+..... ..+..+|++||.+.+-...---.++.|+..+... ...+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~~~-~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQEQ-SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHHHH-HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHHHH-HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 5566665544333333 4467899999999987654444567787775322 11467887777644
No 264
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=60.84 E-value=19 Score=29.25 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEe--ccCCCCHHHHHHHHHHHH
Q 043745 60 NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETS--ALEAINVEKAFQTILSEI 131 (174)
Q Consensus 60 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~v~~~l~~~i 131 (174)
++.+.++.++. .++|++|.+|+.....+. +.+.+++++.+.|+.+..+. ++-|+|-.++-+.+++.+
T Consensus 348 NL~kHIen~~~---fGvpvVVaiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 348 NLRVHVENLRK---FNLPVVVALNRFSTDTEK--EIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHH---TTCCEEEEEECCTTCCHH--HHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---cCCCeEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 33334444444 479999999998764422 24567888999998765433 345566666666555543
No 265
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=59.51 E-value=25 Score=23.89 Aligned_cols=73 Identities=4% Similarity=-0.068 Sum_probs=40.9
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
..+..+|++||....-...-...++.|+..+... ...++|+.++++--.. .........+..++..+|+.++.
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 4567899999998776543333445555544321 1246788888776433 11112234455566666765543
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=59.27 E-value=24 Score=26.28 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=48.9
Q ss_pred EEEEEEeCCCchhhhh--h--hHHhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYRA--I--TSAYYR--GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
..+.|+||+|.+.... + ....+. ..+.+++|+|.+.. ...+..+...+... +. .-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l---~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV---PV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS---CC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC---CC-CEEEEeCCCcccc--
Confidence 4578999999875432 1 112232 36788999987643 23344443333211 22 3355699997532
Q ss_pred CCHHHHHHHHHHhCCcEEEEe
Q 043745 93 VATEDAQSYAEREGLSFIETS 113 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~S 113 (174)
.......+...++++.++.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355667778888876654
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.04 E-value=61 Score=24.23 Aligned_cols=91 Identities=20% Similarity=0.143 Sum_probs=51.4
Q ss_pred EEEEEeCCCchhhhhh-------hHHhh-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 20 KAQIWDTAGQERYRAI-------TSAYY-----RGALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 20 ~l~l~D~~G~~~~~~~-------~~~~~-----~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+.+.||+|....... ....+ ...+.+++|.|....+ .++.+ ..+.... ++ .-+|.||.|
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--CC-CEEEEECGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--CC-CEEEEeCCC
Confidence 4789999996322211 11112 2478899999987432 22222 2222221 22 335669999
Q ss_pred CCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043745 87 LKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKA 123 (174)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v 123 (174)
-... ...+..++...++|+.++.. |+.++++
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 6431 23477888889999888753 4444443
No 268
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=55.00 E-value=22 Score=24.72 Aligned_cols=73 Identities=7% Similarity=-0.096 Sum_probs=44.2
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcE
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSF 109 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 109 (174)
+...+..+|++||+...-+..---.++.|+..+... .-.++|++++++---... .......++.+...+|..+
T Consensus 67 ~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~~ 142 (199)
T 4hs4_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAYV 142 (199)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCEE
Confidence 444578999999998876643333456666665441 125789999887532211 1122455677777777543
No 269
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=54.37 E-value=19 Score=24.97 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=42.8
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
+...+..+|++||+...-+..---.++.|+..+....-.++|++++++- .-..........++.+...+|+.
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 4445678999999988876544445566666654322257899888873 22111111112366677777754
No 270
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=53.87 E-value=20 Score=24.87 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=42.9
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
...+..+|++||....-...-...++.|+..+... ...++++.++++--............++.++..+|+.++.
T Consensus 73 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 73 PADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 34567899999998776543333455565554321 1246788877774432221222345667777777765543
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=53.17 E-value=66 Score=23.77 Aligned_cols=92 Identities=18% Similarity=0.091 Sum_probs=47.7
Q ss_pred EEEEEEeCCCchhh--hhhhH----HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERY--RAITS----AYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~--~~~~~----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 92 (174)
+.+.|+|+||.... ..+.. ...-.+|.+++|+|.... .+.+ .....+.... + ..-+|.||.|....
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~-~~~~~~~~~~--~-i~givlnk~d~~~~-- 252 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEAL-SVARAFDEKV--G-VTGLVLTKLDGDAR-- 252 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHH-HHHHHHHHHT--C-CCEEEEECGGGCSS--
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHH-HHHHHHhhcC--C-CCEEEEECCCCCcc--
Confidence 45789999976422 11111 011258888999997643 1111 1122222211 1 23467899997531
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043745 93 VATEDAQSYAEREGLSFIETSALEAINVEK 122 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 122 (174)
...........++++.+++ .|+++++
T Consensus 253 --~g~~~~~~~~~~~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 253 --GGAALSARHVTGKPIYFAG--VSEKPEG 278 (295)
T ss_dssp --CHHHHHHHHHHCCCEEEEC--------C
T ss_pred --HHHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 2355567778899988775 3444543
No 272
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=52.06 E-value=31 Score=26.56 Aligned_cols=34 Identities=6% Similarity=-0.147 Sum_probs=24.0
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCC
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTK 54 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 54 (174)
+.+.|+|+++.-.. .....+..+|.+|++...+.
T Consensus 245 yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 245 YDFILVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp CSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred CCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 45789999876532 23344568999999998753
No 273
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=50.90 E-value=58 Score=22.40 Aligned_cols=87 Identities=9% Similarity=0.016 Sum_probs=46.8
Q ss_pred EEEEEEeCCCchhhh----hhhHHhhccC-CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCCCccC
Q 043745 19 IKAQIWDTAGQERYR----AITSAYYRGA-LGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI-MMIGNKTDLKHLRA 92 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~----~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~ 92 (174)
+-+.|+|++|.-... .......... +.+|+|.... ..+...+...+..+... +.++ -+|.|+.|... .
T Consensus 109 yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~~---~~~i~gvvlN~~~~~~--~ 182 (224)
T 1byi_A 109 ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQHA---GLTLAGWVANDVTPPG--K 182 (224)
T ss_dssp CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHHT---TCCEEEEEEECCSSCC--T
T ss_pred CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHHC---CCcEEEEEEeCCCCch--h
Confidence 457899998643211 1122222222 2477777763 35566665555555432 4554 47789998542 2
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043745 93 VATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~ 111 (174)
...+..+.+.+.++.+++.
T Consensus 183 ~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 183 RHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp THHHHHHHHHHHSSSCEEE
T ss_pred hHHHHHHHHHHHcCCCEEE
Confidence 2233445555567777654
No 274
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=50.71 E-value=59 Score=22.51 Aligned_cols=49 Identities=8% Similarity=-0.062 Sum_probs=30.9
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKEL 68 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 68 (174)
..+.++|....++..... ..+..+|++||.+..-...---.++.|+..+
T Consensus 48 ~~v~~~dL~~~~d~~~~~-~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 48 HDVRIVRADSDYDVKAEV-QNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp CEEEEEESSSCCCHHHHH-HHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred CEEEEEeCCccccHHHHH-HHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 345666665444433333 4467899999999887644334456777764
No 275
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=46.89 E-value=54 Score=22.55 Aligned_cols=74 Identities=8% Similarity=-0.064 Sum_probs=43.8
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
+...+..+|++||+...-+..---.++.|+..+... .-.++|+.++++---.... ......++.+...++..++
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCCCEEc
Confidence 345567899999998876643333445555555431 1257899988874322111 1224566777777776543
No 276
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=46.10 E-value=91 Score=23.32 Aligned_cols=84 Identities=11% Similarity=0.205 Sum_probs=48.5
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEE-EEEeCCCCCCccCCCHH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIM-MIGNKTDLKHLRAVATE 96 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-lv~nK~Dl~~~~~~~~~ 96 (174)
+.+.++|+++......+ ...+..+|.+|++.... ..++..+...+..+..... .+.++. +|.|..+.. .
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~ 234 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------D 234 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------H
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------h
Confidence 34677887754322222 13356789999887753 4566666666666554332 244443 556765432 3
Q ss_pred HHHHHHHHhCCcEEE
Q 043745 97 DAQSYAEREGLSFIE 111 (174)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (174)
+..+++++++.+++.
T Consensus 235 ~v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 235 EVDRFCKETNFRRLA 249 (314)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhCCeEEE
Confidence 456777778776553
No 277
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=45.82 E-value=31 Score=23.81 Aligned_cols=100 Identities=8% Similarity=0.031 Sum_probs=53.9
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-------------cCCCCeEEEEEeCCCCC--Cc--cCCCHHHHH
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-------------ADSNIVIMMIGNKTDLK--HL--RAVATEDAQ 99 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piilv~nK~Dl~--~~--~~~~~~~~~ 99 (174)
...+..+|++||++..-+..---.++.|+..+... ...+++++++.+--.-. .. ......-.+
T Consensus 68 ~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~ 147 (196)
T 3lcm_A 68 RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKK 147 (196)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHH
T ss_pred HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHH
Confidence 34467899999999987654444567888877432 11467888887754321 00 011123334
Q ss_pred HHHHHhCCcEEEEeccCCCC--HHHHHHHHHHHHHHHHh
Q 043745 100 SYAEREGLSFIETSALEAIN--VEKAFQTILSEIYRIIS 136 (174)
Q Consensus 100 ~~~~~~~~~~~~~Sa~~~~~--i~~v~~~l~~~i~~~~~ 136 (174)
..+.-.|+..+..-...+.. -++-.+..++.+.+...
T Consensus 148 ~~l~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~ 186 (196)
T 3lcm_A 148 QILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQITR 186 (196)
T ss_dssp HTTGGGTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHHH
Confidence 44455576544433333321 23445555565555443
No 278
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=45.34 E-value=26 Score=24.27 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=41.7
Q ss_pred hHHhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 36 TSAYYRGALGALLVYDVTK---PTTFENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
+...+..+|++||+...-+ +..+.++-.|+...... .-.++|+.+++.-.-.... ......++.....++..
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg-~~a~~~Lr~vl~~lg~~ 136 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGA-ALAQARLKNDLLHVGTV 136 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTT-HHHHHHHHHHHHTTTCE
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhH-HHHHHHHHHHHHHcCCE
Confidence 4566889999999966554 34566666665431111 1157899888764332211 12245566666666643
No 279
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=44.75 E-value=40 Score=24.40 Aligned_cols=71 Identities=4% Similarity=-0.095 Sum_probs=43.8
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
+...+..+|++||+...-+..-.-.++.|+..+... .-.++|+.++++--.... ......++.+...+|+.
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg--~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQS--FNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCC--CHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccH--HHHHHHHHHHHHHCCCE
Confidence 445567899999999887654344456666655321 124789888888532211 12345667777777754
No 280
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=42.92 E-value=22 Score=24.29 Aligned_cols=71 Identities=10% Similarity=-0.122 Sum_probs=43.0
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcE
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSF 109 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 109 (174)
..+..+|++||+...-...--..++.|+..+... ...++|++++++--.-... ......++.++..+|+.+
T Consensus 68 ~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~ 141 (193)
T 1rtt_A 68 EQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHP 141 (193)
T ss_dssp HHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEE
Confidence 4567899999997765543333456777776532 1246899988886332221 122355666777777543
No 281
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=42.32 E-value=49 Score=23.08 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=33.9
Q ss_pred hhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 043745 30 ERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-DSNIVIMMIGNKTD 86 (174)
Q Consensus 30 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D 86 (174)
.......+..+++++.+|+++.-.-..+- -..| +|.... ..++|||+|-...+
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECCcc
Confidence 33455667778899999998876544432 2234 454444 45899998876544
No 282
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=42.01 E-value=62 Score=20.20 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=40.5
Q ss_pred hhccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 39 YYRGALGALLVYDVTKPTTFEN--VSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
.+..+|+++|+...-...-... ++.++..+... ..++++.++++--... ......++.....+|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~-l~~k~~~~~~t~g~~~---~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPK-LKGKKVGLFGSYGWGS---GEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGG-CSSCEEEEEEEESSCC---SHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhh-cCCCEEEEEEecCCCC---chHHHHHHHHHHHCCCEEc
Confidence 3568999999987753221122 55556555432 2468999888753321 1234566677777787654
No 283
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=41.77 E-value=35 Score=23.42 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=45.7
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----------cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHh
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----------ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 105 (174)
+...+..+|++||....-+..---.++.|+..+... .-.++|++++.+--.... ......++.+...+
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~--~~~~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP--EEVFEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch--hHHHHHHHHHHHHc
Confidence 445578899999998876654344566777776531 125688888877654221 22346677778888
Q ss_pred CCcE
Q 043745 106 GLSF 109 (174)
Q Consensus 106 ~~~~ 109 (174)
|+.+
T Consensus 139 G~~~ 142 (192)
T 3fvw_A 139 RMHL 142 (192)
T ss_dssp TCEE
T ss_pred CCee
Confidence 8643
No 284
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=41.43 E-value=14 Score=30.13 Aligned_cols=63 Identities=6% Similarity=-0.030 Sum_probs=38.7
Q ss_pred HHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043745 67 ELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEI 131 (174)
Q Consensus 67 ~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~v~~~l~~~i 131 (174)
.+......++|++|.+|+.....+. +.+.+++++.+.|+.+..+=++-|+|-.++-+.+++.+
T Consensus 366 Hien~~~fGvpvVVaiN~F~tDT~a--Ei~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~ 428 (557)
T 3pzx_A 366 HIENIGKFGVPAVVAINAFPTDTEA--ELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTL 428 (557)
T ss_dssp HHHHHHTTTCCEEEEEECCTTCCHH--HHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEeCCCCCCHH--HHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHH
Confidence 3333333589999999998764322 23456666777777554333455667777666666654
No 285
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=40.84 E-value=20 Score=20.67 Aligned_cols=13 Identities=31% Similarity=0.818 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 043745 162 SEANTKKPCCSSS 174 (174)
Q Consensus 162 ~~~~~~~~c~~~~ 174 (174)
...+..+.||.|.
T Consensus 15 ~~~~k~KpCCaCp 27 (69)
T 1u96_A 15 ECEDKPKPCCVCK 27 (69)
T ss_dssp SCCCCCCCCTTSS
T ss_pred cCCCCCCcCeeCc
Confidence 4556678999884
No 286
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=39.62 E-value=87 Score=21.26 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=34.8
Q ss_pred EEEEeCCCchh-hhhhhHHhhc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEE-EeC
Q 043745 21 AQIWDTAGQER-YRAITSAYYR--GALGALLVYDVTKPT-TFENVSRWLKELRDHADSNIVIMMI-GNK 84 (174)
Q Consensus 21 l~l~D~~G~~~-~~~~~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv-~nK 84 (174)
+.+=|+-+... +..+.. .+. ++|.+|++=|+.+.. ..+.+..++..+... +.|+++| ||+
T Consensus 9 ~~iSD~H~~~~~~~~~~~-~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNH 73 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQ 73 (228)
T ss_dssp EEEECCTTCHHHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTT
T ss_pred EEEeeccCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCC
Confidence 45667755432 222222 222 799999999998764 555555555655443 3566555 454
No 287
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=39.45 E-value=38 Score=22.91 Aligned_cols=72 Identities=7% Similarity=-0.094 Sum_probs=43.0
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEE
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIE 111 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (174)
+...+..+|++||+...-...--..++.|+..+... -.++|++++.+ -.... ......++.++..+|+.++.
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~-l~gK~~~~~~~-G~~~~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHE-WHGKPALVVSY-GGHGG--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTT-TTTCEEEEEEE-ETTTT--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhh-cCCCEEEEEEe-CCcch--hhHHHHHHHHHHHCCCEEcc
Confidence 345577999999999887654334456666655321 23678877765 22211 11234566677777875443
No 288
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=38.23 E-value=29 Score=23.21 Aligned_cols=73 Identities=8% Similarity=-0.073 Sum_probs=41.9
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-----------cCCCCeEEEEEeCCCCCC-ccCCCHHHHHHHHHHh
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-----------ADSNIVIMMIGNKTDLKH-LRAVATEDAQSYAERE 105 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-----------~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~ 105 (174)
..+..+|++||.+..-...--..++.|+..+... ...+++++++++--.-.. ........++.++..+
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 3567899999999887644333455566554321 013578888887433110 0011234556667777
Q ss_pred CCcEE
Q 043745 106 GLSFI 110 (174)
Q Consensus 106 ~~~~~ 110 (174)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 87654
No 289
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.75 E-value=88 Score=20.14 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=49.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVE 121 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 121 (174)
++|++.+....+ .....+++++..++.....++++++-+.-.- +. -...+..+.+++.|+..+. ..+.+..
T Consensus 54 ~~d~v~lS~~~~--~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~-~~---~~~~~~~~~~~~~G~d~~~---~~g~~~~ 124 (137)
T 1ccw_A 54 KADAILVSSLYG--QGEIDCKGLRQKCDEAGLEGILLYVGGNIVV-GK---QHWPDVEKRFKDMGYDRVY---APGTPPE 124 (137)
T ss_dssp TCSEEEEEECSS--THHHHHTTHHHHHHHTTCTTCEEEEEESCSS-SS---CCHHHHHHHHHHTTCSEEC---CTTCCHH
T ss_pred CCCEEEEEecCc--CcHHHHHHHHHHHHhcCCCCCEEEEECCCcC-ch---HhhhhhHHHHHHCCCCEEE---CCCCCHH
Confidence 677776665553 4455666777777665433577765554321 11 1244556778889987554 3556888
Q ss_pred HHHHHHHHHH
Q 043745 122 KAFQTILSEI 131 (174)
Q Consensus 122 ~v~~~l~~~i 131 (174)
++..++.+.+
T Consensus 125 ~~~~~l~~~~ 134 (137)
T 1ccw_A 125 VGIADLKKDL 134 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888776653
No 290
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=35.67 E-value=1.1e+02 Score=21.36 Aligned_cols=37 Identities=8% Similarity=-0.050 Sum_probs=22.8
Q ss_pred EEEEeCCCch-hhhhhhHHh-hccCCEEEEEEeCCChhh
Q 043745 21 AQIWDTAGQE-RYRAITSAY-YRGALGALLVYDVTKPTT 57 (174)
Q Consensus 21 l~l~D~~G~~-~~~~~~~~~-~~~~d~ii~v~d~~~~~s 57 (174)
+.+=|+-+.. .+....... -.++|.+|++=|+.+...
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 4667775543 233333222 147999999999987543
No 291
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=35.56 E-value=30 Score=23.67 Aligned_cols=71 Identities=10% Similarity=-0.086 Sum_probs=38.4
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHh----hcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRD----HADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
..+..+|++||....-...--..++.|+..+.. ....++|+.++++--............+..+...+|+.
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~ 124 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGL 124 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCE
Confidence 456789999999776443222234445544421 11246888888876433211112234555666666643
No 292
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=33.24 E-value=10 Score=29.75 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCC--CCCccCCCHHHHHHHHHH--hCCcEEEEeccC
Q 043745 75 NIVIMMIGNKTD--LKHLRAVATEDAQSYAER--EGLSFIETSALE 116 (174)
Q Consensus 75 ~~piilv~nK~D--l~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 116 (174)
..|++.++|+.+ +..........+++++.. .+.+++.+||+.
T Consensus 222 ~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~ 267 (396)
T 2ohf_A 222 SKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGAL 267 (396)
T ss_dssp GSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHH
T ss_pred CCceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHH
Confidence 489999999973 321111223456666665 357899999874
No 293
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=31.89 E-value=71 Score=23.30 Aligned_cols=47 Identities=4% Similarity=-0.062 Sum_probs=32.8
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-------------CCCCeEEEEEeCCC
Q 043745 40 YRGALGALLVYDVTKPTTFENVSRWLKELRDHA-------------DSNIVIMMIGNKTD 86 (174)
Q Consensus 40 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~piilv~nK~D 86 (174)
+..+|++||.+.+-...---.++.|+..+.... ..+++++++.+--.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 678999999999876543345678888774321 14678888877544
No 294
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=31.77 E-value=66 Score=20.25 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=39.9
Q ss_pred hhccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcE
Q 043745 39 YYRGALGALLVYDVTKPTTFE--NVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSF 109 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 109 (174)
.+...|+++|....-...... .+..|+..+... ..++++.++++--... ......+.+....+|..+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~ 110 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVV 110 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEE
Confidence 356889999998765432111 345556655443 3478999998743221 122456667777777643
No 295
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=31.30 E-value=64 Score=22.30 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=33.6
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---------cCCCCeEEEEEeCCC
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---------ADSNIVIMMIGNKTD 86 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~piilv~nK~D 86 (174)
...+..+|++||.+.+-...---.++.|+..+... ...+++++++.+--.
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~ 111 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGA 111 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESS
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCC
Confidence 34467899999999887654444567888887432 114678877776443
No 296
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=30.62 E-value=72 Score=21.37 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEE
Q 043745 75 NIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIET 112 (174)
Q Consensus 75 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (174)
..|+|+++......+ ..+++.++++.++++++.+
T Consensus 35 krPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 35 KRPLLMVGTLALDPE----LLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp SSEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEEC
T ss_pred CCCEEEECCCccchh----HHHHHHHHHHHhCCCEEEC
Confidence 579999988765432 3567899999999999753
No 297
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.69 E-value=1.3e+02 Score=20.16 Aligned_cols=73 Identities=3% Similarity=0.012 Sum_probs=45.0
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-------------cCCCCeEEEEEeCCCCCCc--cCCCHHHHHHHH
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-------------ADSNIVIMMIGNKTDLKHL--RAVATEDAQSYA 102 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~ 102 (174)
..+..+|++||++..-...--..++.|+..+... ...+++++++.+--..... -......++.++
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l 161 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL 161 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence 4567899999998876644334567788777531 1246788888874432111 122344567777
Q ss_pred HHhCCcEE
Q 043745 103 EREGLSFI 110 (174)
Q Consensus 103 ~~~~~~~~ 110 (174)
..+|+.++
T Consensus 162 ~~~G~~~~ 169 (201)
T 1t5b_A 162 GFIGITDV 169 (201)
T ss_dssp HHTTCCCE
T ss_pred hhcCccee
Confidence 77887544
No 298
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=28.32 E-value=1.4e+02 Score=20.23 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=43.6
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-------------CCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHh
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHA-------------DSNIVIMMIGNKTDLKHLRAVATEDAQSYAERE 105 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 105 (174)
.+..+|++||.+..-...---.++.|+..+.... ..+++++++.+--.-..........++.+...+
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~~~ 170 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFI 170 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHHhC
Confidence 4678999999998876544445677888764310 146788888763322111122234456667777
Q ss_pred CCcEE
Q 043745 106 GLSFI 110 (174)
Q Consensus 106 ~~~~~ 110 (174)
|+..+
T Consensus 171 G~~~~ 175 (208)
T 2hpv_A 171 GVDQV 175 (208)
T ss_dssp TCCEE
T ss_pred CCCee
Confidence 87543
No 299
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=28.04 E-value=66 Score=21.45 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=36.9
Q ss_pred hhccCCEEEEEEeC-CChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCcc--CCCHHHHHHHHHHhCCcE
Q 043745 39 YYRGALGALLVYDV-TKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLR--AVATEDAQSYAEREGLSF 109 (174)
Q Consensus 39 ~~~~~d~ii~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 109 (174)
.+...|.++|.+.. ...+.-..+..++..+......++++.++++---..-.+ .-....+.+.+...|..+
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~ 115 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATI 115 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEE
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEE
Confidence 35678999998776 222222234445555543333568888888732111101 112344555555566543
No 300
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=27.42 E-value=1e+02 Score=23.63 Aligned_cols=66 Identities=11% Similarity=-0.076 Sum_probs=41.6
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCc
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLS 108 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~ 108 (174)
.+..+|++||....-...-...++.|+..+..... .++++.++++--.. . -....++.++.. +|..
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~~-~---~a~~~l~~~l~~~~g~~ 371 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGWS-N---RAVPDIVAELRDGCKAD 371 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESSS-C---CHHHHHHHHHHHTSCCB
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCCC-c---hhHHHHHHHHHhhcCcE
Confidence 46789999999877654333345666666544333 46788888875332 1 134567777777 7754
No 301
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=27.34 E-value=1e+02 Score=21.15 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=6.8
Q ss_pred hccCCEEEEEEeC
Q 043745 40 YRGALGALLVYDV 52 (174)
Q Consensus 40 ~~~~d~ii~v~d~ 52 (174)
+.++|++|++||-
T Consensus 128 vd~sD~liavyDg 140 (181)
T 2nx2_A 128 IDKSDGLLLLYDP 140 (181)
T ss_dssp HHHSSEEEEECCT
T ss_pred HHHCCEEEEEEcC
Confidence 4455555555553
No 302
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.75 E-value=1.1e+02 Score=22.74 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=40.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 103 (174)
.++|+++++-..-...+-+.+..|+..+.... ++|+++- |-=.. ....++.+...++++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY-n~P~~-tg~~l~~~~~~~La~ 156 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV--EIPVVIY-TNPQF-QRSDLTLDVIARLAE 156 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC--SSCEEEE-ECTTT-CSSCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-ECccc-cCCCCCHHHHHHHHc
Confidence 37999999988777777788888888887765 4888753 42211 123456666766653
No 303
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=25.93 E-value=96 Score=21.94 Aligned_cols=48 Identities=6% Similarity=0.008 Sum_probs=32.8
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-------------cCCCCeEEEEEeCCC
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDH-------------ADSNIVIMMIGNKTD 86 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piilv~nK~D 86 (174)
.+..+|++||.+..-...---.++.|+..+... ...+++++++.+--.
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 367899999999987654444567788776422 114678888877654
No 304
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=25.81 E-value=76 Score=20.79 Aligned_cols=72 Identities=8% Similarity=-0.043 Sum_probs=39.8
Q ss_pred hhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC-C-ccCCCHHHHHHHHHHhCCcEE
Q 043745 39 YYRGALGALLVYDVTK-PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLK-H-LRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~-~~~~~~~~~~~~~~~~~~~~~ 110 (174)
.+...|.+||.+..-. ...-..+..++..+......++++.++++---.. . .-......+...+..+|..++
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~ 117 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTV 117 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEEC
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEE
Confidence 3567899999988743 2222233445544443233568899998853211 1 011234566677777776543
No 305
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.42 E-value=1.8e+02 Score=20.39 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=31.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEE
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHAD-SNIVIMMIG 82 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 82 (174)
++|++.+.++.....+...+.+.+..++.... .++|+++-|
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 68898888898888888888888888877643 357776654
No 306
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=25.08 E-value=78 Score=24.13 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=29.5
Q ss_pred EEEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q 043745 18 TIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELR 69 (174)
Q Consensus 18 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 69 (174)
.+.+.|+|++... .......+..+|.++++...+ ..+...+..++..+.
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~ 307 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVV 307 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHH
Confidence 3567899998433 223445677899999998764 334333444444433
No 307
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=24.04 E-value=1.4e+02 Score=19.85 Aligned_cols=45 Identities=2% Similarity=-0.063 Sum_probs=30.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTD 86 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 86 (174)
.+...|.++|.+.+-...-...+..|+..+ ...+.+++++++--.
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~---~l~gk~v~~f~t~g~ 128 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH---SLKGKTVVPFATSGG 128 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS---CCTTSEEEEEEECSS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc---CCCcCEEEEEEecCC
Confidence 456889999999986543334455565554 234688999988753
No 308
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.00 E-value=1e+02 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=30.1
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST--PLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 38999999988776667788888888887764 5787753
No 309
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.97 E-value=1.1e+02 Score=22.68 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=37.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEe-----CCCCCCccCCCHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGN-----KTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n-----K~Dl~~~~~~~~~~~~~~~ 102 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++- | ..| ++.+...+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY-n~P~~tg~~------l~~~~~~~La 151 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV--DIPIIIY-NIPSRTCVE------ISVDTMFKLA 151 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE-ECHHHHSCC------CCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE-eCCcccCcC------CCHHHHHHHH
Confidence 48999999987776667788888888887765 5787753 4 333 3455566665
No 310
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}
Probab=23.83 E-value=1.3e+02 Score=19.22 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCCccceeEEEECCeEEEEEEEeCCC
Q 043745 3 QPRLGKLCDFQVEGRTIKAQIWDTAG 28 (174)
Q Consensus 3 ~pt~g~~~~~~~~~~~~~l~l~D~~G 28 (174)
.|+.|...+++++++.+.|.-+|.++
T Consensus 57 s~~CGtC~~lty~g~si~vlaID~a~ 82 (120)
T 3m3g_A 57 SASCGTCWKLQYSGHTIYVLAVDHAA 82 (120)
T ss_dssp CTTTTCEEEEEETTEEEEEEEEEECS
T ss_pred CCCCCceEEEEECCeEEEEEEEecCC
Confidence 46777888999999999999999764
No 311
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=23.61 E-value=11 Score=27.37 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=12.6
Q ss_pred CCEEEEEEeCCChhhHHHH
Q 043745 43 ALGALLVYDVTKPTTFENV 61 (174)
Q Consensus 43 ~d~ii~v~d~~~~~s~~~~ 61 (174)
..++|+||+....+....+
T Consensus 103 iggII~~f~~p~~~~~~~i 121 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELL 121 (233)
T ss_dssp EEEEEEEECHHHHCGGGTH
T ss_pred cceEEEEEeCCCcchHHHH
Confidence 4789999986655444433
No 312
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=23.54 E-value=1.1e+02 Score=22.63 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=29.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS--TIPIIV 131 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE
Confidence 48999999988776667788888888887765 578875
No 313
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.38 E-value=1.1e+02 Score=22.54 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=29.8
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKP-TTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-.. .+-+.+..++..+.... ++|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~--~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS--PHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC--SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC--CCCEEEE
Confidence 378999999777666 67788888888887765 5787753
No 314
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.28 E-value=1.1e+02 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 131 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI--NLPIVL 131 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 38999999987776667788888888887765 578774
No 315
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=23.17 E-value=17 Score=20.73 Aligned_cols=12 Identities=42% Similarity=1.035 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 043745 163 EANTKKPCCSSS 174 (174)
Q Consensus 163 ~~~~~~~c~~~~ 174 (174)
.....+.||.|.
T Consensus 20 ~~k~~KpCCaCp 31 (67)
T 2l0y_B 20 EKRPLKPCCTCP 31 (67)
T ss_dssp ------------
T ss_pred CCCCCCcCeeCc
Confidence 334468999874
No 316
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=23.15 E-value=1.2e+02 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=26.0
Q ss_pred CEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 44 LGALLVYDVTKPT----------TFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 44 d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
..++.+|++-+++ +.+..++|+..|..... +.|+++|+
T Consensus 91 ~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i~-~~~~vvIl 138 (315)
T 1uoz_A 91 MPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGLG-SSPATIIV 138 (315)
T ss_dssp BCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHhC-CCceEEEE
Confidence 3467777776654 46677789998877655 56777664
No 317
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=23.14 E-value=41 Score=25.23 Aligned_cols=60 Identities=18% Similarity=0.031 Sum_probs=34.9
Q ss_pred EEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 043745 21 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDL 87 (174)
Q Consensus 21 l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 87 (174)
+.+=|+-+.... + .+..+|++|++=|+.+.....++..++..+.... ..++++|.---|.
T Consensus 63 ~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~--~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 63 VCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLP--YEYKIVIAGNHEL 122 (296)
T ss_dssp EEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSC--CSEEEECCCTTCG
T ss_pred EEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhCC--CCeEEEEcCCccc
Confidence 566677654421 1 3468999999999998655555555544444432 2344444433343
No 318
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=22.94 E-value=1.1e+02 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=30.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++-
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 148 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT--EVPICLY 148 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 38999999987766667778888888887765 5787753
No 319
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.90 E-value=1.1e+02 Score=22.67 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHH-hCCcEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAER-EGLSFIE 111 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~ 111 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++- |-=.. ....++.+...++++. -++.-+.
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY-n~P~~-tg~~l~~~~~~~La~~~pnivgiK 169 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV--DIPVLLY-NVPGR-TGCEISTDTIIKLFRDCENIYGVK 169 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEE-ECHHH-HSCCCCHHHHHHHHHHCTTEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE-eCchh-hCcCCCHHHHHHHHhcCCCEEEEE
Confidence 47999999977766667778888888887765 5888754 31000 1123456667777755 3443333
No 320
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=22.78 E-value=1.2e+02 Score=23.71 Aligned_cols=50 Identities=6% Similarity=-0.054 Sum_probs=34.2
Q ss_pred HHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---------CCCCeEEEEEeCCC
Q 043745 37 SAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA---------DSNIVIMMIGNKTD 86 (174)
Q Consensus 37 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---------~~~~piilv~nK~D 86 (174)
...+..+|++||.+..-...---.++.|+..+.... -.+++++++.+--.
T Consensus 287 ~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 287 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 344678999999999876544455678888874321 14678888777543
No 321
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.68 E-value=1.2e+02 Score=22.81 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=30.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..|+..+.... ++|+++-
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY 155 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV--AIPQILY 155 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37999999977666667778888888887765 5888764
No 322
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=22.56 E-value=2e+02 Score=20.10 Aligned_cols=71 Identities=4% Similarity=-0.045 Sum_probs=44.1
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH----ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
..+..+|++||....-...-.-.++.|+..+... ...+.|++++++--.. . .......++.++...|+.++
T Consensus 75 ~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 75 KELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeee
Confidence 3467899999999887654444556676665321 1246788887765322 1 12334567777788887644
No 323
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=22.54 E-value=1.1e+02 Score=22.87 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=39.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE----eCCCCCCccCCCHHHHHHHHHHh
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG----NKTDLKHLRAVATEDAQSYAERE 105 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~----nK~Dl~~~~~~~~~~~~~~~~~~ 105 (174)
.++|+++++-..-...+-+.+..|+..+.... ++|+++-= +..| ++.+...+++++.
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~------l~~~~~~~La~~~ 176 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI--SIPIIIYNIPSRSVID------MAVETMRDLCRDF 176 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--SSCEEEEECHHHHSCC------CCHHHHHHHHHHC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC--CCCEEEEeCchhhCCC------CCHHHHHHHHhhC
Confidence 37999999977766667778888888887765 58887642 2333 4456666666533
No 324
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=27.94 E-value=19 Score=25.14 Aligned_cols=72 Identities=7% Similarity=-0.130 Sum_probs=36.8
Q ss_pred hHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCc
Q 043745 36 TSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDH---ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLS 108 (174)
Q Consensus 36 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 108 (174)
+...+..+|++||+...-+..---.++.|+..+... .-.++|+.++++--.-... ......++.+...+|+.
T Consensus 67 ~~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~lg~~ 141 (199)
T 3s2y_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGG-ARAQYHLRQSLVFLDAY 141 (199)
Confidence 344567899999998766542222334444444321 1236788877754221111 11234445555555543
No 325
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}
Probab=22.08 E-value=1.6e+02 Score=19.27 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCCCccceeEEEECCeEEEEEEEeCCCch
Q 043745 2 GQPRLGKLCDFQVEGRTIKAQIWDTAGQE 30 (174)
Q Consensus 2 g~pt~g~~~~~~~~~~~~~l~l~D~~G~~ 30 (174)
+.|+.|....++++++.+.|.-+|.++..
T Consensus 56 ns~~CGtCwkLtY~G~sI~vlaID~a~~g 84 (136)
T 3sum_A 56 AQTECGSCWKLRYKGNHAFVTVVDRVEEA 84 (136)
T ss_dssp TTBCTTCEEEEEETTEEEEEEEEECCCST
T ss_pred CCCCCCceEEEEECCeEEEEEEEecCCCc
Confidence 35677788889999999999999987643
No 326
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.08 E-value=1.2e+02 Score=22.30 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..|+..+.... +.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY 133 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV--ELPLILY 133 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEE
Confidence 37999999877666666777888888887765 5888754
No 327
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=21.99 E-value=1.1e+02 Score=22.76 Aligned_cols=58 Identities=24% Similarity=0.213 Sum_probs=37.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 102 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++- |-=.. ....++.+...+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilY-n~P~~-tg~~l~~~~~~~La 163 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT--DLGIVVY-NVPGR-TGVNVLPETAARIA 163 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEEE-ECHHH-HSCCCCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE-eCccc-cCcCCCHHHHHHHH
Confidence 38999999987766667788888888887654 5787753 31000 11234456666666
No 328
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.93 E-value=1.1e+02 Score=22.49 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=28.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
++|+++++-..-...+-+.+..++..+.... ++|+++
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~--~lPiil 132 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT--DLPQIL 132 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHHHHHHHHHHTTC--SSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 7899999877766667778888888887654 578775
No 329
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.82 E-value=2e+02 Score=19.65 Aligned_cols=80 Identities=6% Similarity=-0.021 Sum_probs=49.1
Q ss_pred HhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-----------------cCCCCeEEEEEeCCC--CCC-c----cCC
Q 043745 38 AYYRGALGALLVYDVTKPTTFENVSRWLKELRDH-----------------ADSNIVIMMIGNKTD--LKH-L----RAV 93 (174)
Q Consensus 38 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-----------------~~~~~piilv~nK~D--l~~-~----~~~ 93 (174)
..+..+|++||.+..-+..---.++.|+..+... ...+++++++.+--. ... . ...
T Consensus 83 ~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~~ 162 (212)
T 3r6w_A 83 GELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNH 162 (212)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGCC
T ss_pred HHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchhh
Confidence 3467899999999887654444567888877321 114678888877552 111 0 123
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCC
Q 043745 94 ATEDAQSYAEREGLSFIETSALEA 117 (174)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~Sa~~~ 117 (174)
.....+.+..-.|+..+..-...+
T Consensus 163 ~~~~l~~~l~~~G~~~~~~v~~~g 186 (212)
T 3r6w_A 163 ADPWLRTALGFIGIDEVTVVAAEG 186 (212)
T ss_dssp SHHHHHHHHHHHTCCEEEEEEECC
T ss_pred hHHHHHHHHHHCCCceeEEEEEec
Confidence 345567777888886554443333
No 330
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=21.80 E-value=1.8e+02 Score=19.09 Aligned_cols=91 Identities=10% Similarity=-0.020 Sum_probs=45.1
Q ss_pred hccCCEEEEEEeCC-ChhhHHHHHHHHHHHHh---hcCCCCeEEEEEeCCCCC-CccCCCHHHHHHHHHHhCCcE----E
Q 043745 40 YRGALGALLVYDVT-KPTTFENVSRWLKELRD---HADSNIVIMMIGNKTDLK-HLRAVATEDAQSYAEREGLSF----I 110 (174)
Q Consensus 40 ~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~---~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~----~ 110 (174)
+...|.+||+.... ..+--..+..++..+.. ....++++.+++.- |.. ..-......+.+.+..+|... +
T Consensus 54 l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~avfg~G-~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~ 132 (167)
T 1ykg_A 54 IASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLG-DTSYEFFCQSGKDFDSKLAELGGERLLDRV 132 (167)
T ss_dssp GGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEEEEEEC-CTTSSSTTHHHHHHHHHHHHHTCEESSCCE
T ss_pred hccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccCCCEEEEEeec-CCCHHHHHHHHHHHHHHHHHCCCeEeecce
Confidence 45689999998877 32222223444555432 11245778877753 221 101122345666666777543 3
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHH
Q 043745 111 ETSALEAINVEKAFQTILSEIYRII 135 (174)
Q Consensus 111 ~~Sa~~~~~i~~v~~~l~~~i~~~~ 135 (174)
.+. ....++ +....+.+....
T Consensus 133 ~~d---~~~~~~-~~~w~~~l~~~l 153 (167)
T 1ykg_A 133 DAD---VEYQAA-ASEWRARVVDAL 153 (167)
T ss_dssp EEC---TTCHHH-HHHHHHHHHHHH
T ss_pred ecC---CCcHHH-HHHHHHHHHHHH
Confidence 333 233444 444445555544
No 331
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.72 E-value=1.1e+02 Score=22.60 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=37.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHH
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 103 (174)
++|+++++-..-...+-+.+..|+..+.... ++|+++- |-=.. ....++.+...++++
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~--~lPiilY-n~P~~-tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADAV--KLPVVLY-NVPSR-TNMTIEPETVEILSQ 154 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CSCEEEE-ECHHH-HSCCCCHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE-ecccc-cCCCCCHHHHHHHhc
Confidence 8999999977666667778888888887765 5888754 31000 112344566666664
No 332
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=21.58 E-value=1.2e+02 Score=23.13 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=38.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAE 103 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 103 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++ -|-=.. ....++.+...++++
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil-Yn~P~~-tg~~l~~e~~~~La~ 183 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSV--TLPVML-YNFPAL-TGQDLTPALVKTLAD 183 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC--SSCEEE-EECHHH-HSSCCCHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE-EeCchh-cCcCCCHHHHHHHHH
Confidence 38999999987776667788888888887764 578775 341100 012345566777763
No 333
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.52 E-value=1.3e+02 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..|+..+.... +.|+++-
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 139 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT--SIPMIIY 139 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 37999999977766666677888888887765 5888764
No 334
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=21.40 E-value=2.7e+02 Score=21.00 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=47.1
Q ss_pred EEEEEEeCCCchhhhhhhHHhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCCCccCCCH
Q 043745 19 IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD---SNIVIMMIGNKTDLKHLRAVAT 95 (174)
Q Consensus 19 ~~l~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~ 95 (174)
+.+.++|....+. .....-+..+|++||....-...-...++.++..+..... .++++.++++--.. . -..
T Consensus 286 ~~v~~~~~~~~~~--~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g~~-~---~a~ 359 (404)
T 2ohh_A 286 VDVRVYCLHEDDR--SEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGN-G---GAT 359 (404)
T ss_dssp CEEEEEETTTSCH--HHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEESSS-C---CHH
T ss_pred CeEEEEECCCCCH--HHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEecCCC-C---hhH
Confidence 3456666543221 1122346789999999765443222234445554433222 46788888874322 1 224
Q ss_pred HHHHHHHHHhCCcEE
Q 043745 96 EDAQSYAEREGLSFI 110 (174)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (174)
..++.++..+|..++
T Consensus 360 ~~l~~~l~~~g~~~~ 374 (404)
T 2ohh_A 360 GTMKELLAEAGFDVA 374 (404)
T ss_dssp HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 567777888886544
No 335
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=21.38 E-value=96 Score=19.68 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=37.0
Q ss_pred hcc-CCEEEEEEeCCCh-h--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCC-CccCCCHHHHHHHHHHhCCcE
Q 043745 40 YRG-ALGALLVYDVTKP-T--TFENVSRWLKELRDHADSNIVIMMIGNKTDLK-HLRAVATEDAQSYAEREGLSF 109 (174)
Q Consensus 40 ~~~-~d~ii~v~d~~~~-~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 109 (174)
+.. +|.+||+...-.. . --..++.++..+......+.++.++++ -|.. ..-......+......+|...
T Consensus 45 l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v~~~-g~~~~~~~~~a~~~l~~~l~~~g~~~ 118 (147)
T 1f4p_A 45 LFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGC-GDSSWEYFCGAVDAIEEKLKNLGAEI 118 (147)
T ss_dssp TTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEEEEE-ECTTSSSTTHHHHHHHHHHHHTTCEE
T ss_pred hcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEEEee-cCCChHHHHHHHHHHHHHHHHcCCeE
Confidence 556 8999998766521 1 111334455544332234688888888 2221 111123455666677777643
No 336
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=21.17 E-value=1.1e+02 Score=22.52 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=29.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMI 81 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 81 (174)
.++|+++++-..-...+-+.+..++..+.... +.|+++-
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~--~lPiilY 136 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET--GSNMIVY 136 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--CCCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEE
Confidence 38999999987776667778888888887765 4787743
No 337
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.05 E-value=1.2e+02 Score=22.66 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=37.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE----eCCCCCCccCCCHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG----NKTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~----nK~Dl~~~~~~~~~~~~~~~ 102 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++-= +..|+ +.+...+++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~P~~tg~~l------~~~~~~~La 166 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT--ELPMLLYDIPGRSAVPI------EPDTIRALA 166 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC--SSCEEEEECHHHHSSCC------CHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCCC------CHHHHHHHh
Confidence 37999999977766667778888888887765 58887642 24443 455566665
No 338
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=20.89 E-value=2.7e+02 Score=20.90 Aligned_cols=68 Identities=16% Similarity=0.038 Sum_probs=39.5
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEE
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFI 110 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 110 (174)
.+..+|+++|....-...-...++.++..+......+.++.++++--. .......++..+..+|+.++
T Consensus 299 ~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~s~g~----~~~a~~~l~~~l~~~g~~~~ 366 (398)
T 1ycg_A 299 EILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGW----GGGAQKILEERLKAAKIELI 366 (398)
T ss_dssp HHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEEEESS----SCCHHHHHHHHHHHTTCEES
T ss_pred HHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEEeCCC----chHHHHHHHHHHHHCCeEEe
Confidence 346789999997654432112244455554433334688888887321 12235667777787886544
No 339
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.87 E-value=1.6e+02 Score=18.13 Aligned_cols=76 Identities=8% Similarity=0.101 Sum_probs=38.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCCCccCCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDH-ADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINV 120 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 120 (174)
..|++|+=++..+...++ ++..++.. .....|+|++....+. .....+...|..-+.. .....
T Consensus 52 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~---------~~~~~~~~~g~~~~l~---kp~~~ 115 (147)
T 2zay_A 52 HPHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRATA---------KEEAQLLDMGFIDFIA---KPVNA 115 (147)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCCH---------HHHHHHHHHTCSEEEE---SSCCH
T ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCCH---------HHHHHHHhCCCCEEEe---CCCCH
Confidence 467666655554444443 33444442 1246888887655431 2222334566543322 34567
Q ss_pred HHHHHHHHHHHHH
Q 043745 121 EKAFQTILSEIYR 133 (174)
Q Consensus 121 ~~v~~~l~~~i~~ 133 (174)
+++...+...+..
T Consensus 116 ~~L~~~i~~~~~~ 128 (147)
T 2zay_A 116 IRLSARIKRVLKL 128 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666555443
No 340
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=20.41 E-value=1.7e+02 Score=19.66 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=23.2
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 043745 39 YYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIG 82 (174)
Q Consensus 39 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 82 (174)
.++.+|++|.++|..+.++=-..+ +-.... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~E--iGyA~a---lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFX--IGFMRA---MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHH--HHHHHH---TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceee--hhhHhh---CCCeEEEEE
Confidence 467899999999976554322211 111111 268998873
No 341
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.39 E-value=1.1e+02 Score=22.95 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=37.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 102 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++ -| . ... ++.+...+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiil-Yn---~-tg~-l~~~~~~~La 158 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAPSII-YF---K-DAH-LSDDVIKELA 158 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSCEEE-EE---C-CTT-SCTHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCCEEE-Ee---C-CCC-cCHHHHHHHH
Confidence 38999999977766667777888888887765 478765 45 2 223 5566666665
No 342
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.09 E-value=1.1e+02 Score=23.21 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEE
Q 043745 41 RGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMM 80 (174)
Q Consensus 41 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 80 (174)
.++|+++++-..-...+-+.+..++..+.... ++|+++
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~--~lPiil 165 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGAT--ALPLAI 165 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc--CCCEEE
Confidence 38999999877766667778888888887765 578775
No 343
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.04 E-value=98 Score=23.19 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=36.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCCCccCCCHHHHHHHH
Q 043745 42 GALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYA 102 (174)
Q Consensus 42 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 102 (174)
++|+++++-..-...+-+.+..++..+.... ++|+++-=+..+ ++.+...+++
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lPiilYn~g~~------l~~~~~~~La 158 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGVYAYFRDIIEAL--DFPSLVYFKDPE------ISDRVLVDLA 158 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHHH--TSCEEEEECCTT------SCTHHHHHHT
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCC------CCHHHHHHHH
Confidence 7999999877666667788888888887765 488876422333 3345555555
Done!