Query 043748
Match_columns 120
No_of_seqs 149 out of 1042
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10447 HflBKC-binding inner 100.0 1.2E-34 2.5E-39 220.1 14.9 114 1-119 104-217 (219)
2 COG0670 Integral membrane prot 100.0 6E-30 1.3E-34 195.8 14.9 111 2-116 116-227 (233)
3 cd06181 BI-1-like BAX inhibito 100.0 2E-29 4.3E-34 188.9 14.6 113 2-118 96-212 (212)
4 PF01027 Bax1-I: Inhibitor of 99.9 1.2E-25 2.6E-30 166.2 14.0 111 1-115 93-205 (205)
5 KOG2322 N-methyl-D-aspartate r 99.9 5.3E-25 1.1E-29 167.4 5.8 100 1-103 138-237 (237)
6 KOG1629 Bax-mediated apoptosis 99.9 1.2E-23 2.6E-28 156.8 10.9 114 1-117 107-222 (235)
7 KOG1630 Growth hormone-induced 99.8 1.5E-19 3.3E-24 139.4 4.8 116 1-118 204-332 (336)
8 PF12811 BaxI_1: Bax inhibitor 97.9 0.00065 1.4E-08 53.6 13.3 115 2-120 146-273 (274)
9 COG4760 Predicted membrane pro 95.6 0.27 5.8E-06 37.9 10.3 115 2-120 144-275 (276)
10 KOG3488 Dolichol phosphate-man 83.9 9 0.0002 24.6 7.6 56 64-119 11-78 (81)
11 KOG3103 Rab GTPase interacting 56.2 61 0.0013 25.4 6.6 32 27-58 165-196 (249)
12 PF14147 Spore_YhaL: Sporulati 43.3 46 0.00099 19.9 3.3 21 64-84 5-25 (52)
13 PF11026 DUF2721: Protein of u 37.9 1.4E+02 0.0029 20.7 6.5 26 27-52 89-114 (130)
14 PRK15097 cytochrome d terminal 34.7 1.7E+02 0.0036 25.5 6.6 51 3-56 188-238 (522)
15 PRK15035 cytochrome bd-II oxid 32.4 1.9E+02 0.0042 25.1 6.6 51 3-56 188-238 (514)
16 PHA03048 IMV membrane protein; 30.3 1.7E+02 0.0037 19.5 5.4 13 65-77 56-68 (93)
17 PF11317 DUF3119: Protein of u 26.5 97 0.0021 21.5 3.2 21 68-88 31-51 (116)
18 PF04995 CcmD: Heme exporter p 23.3 95 0.0021 17.5 2.3 20 3-22 7-26 (46)
19 PF08122 NDUF_B12: NADH-ubiqui 20.4 1E+02 0.0022 18.4 2.2 13 68-80 33-45 (57)
20 KOG2678 Predicted membrane pro 20.2 1.1E+02 0.0024 23.8 2.8 28 28-55 208-235 (244)
21 COG4129 Predicted membrane pro 20.1 4.8E+02 0.01 21.2 6.6 28 35-62 58-85 (332)
No 1
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=220.05 Aligned_cols=114 Identities=26% Similarity=0.494 Sum_probs=108.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 043748 1 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYD 80 (120)
Q Consensus 1 ~iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~D 80 (120)
++|.+|++.|+++|+++|++|+ +||+|++++|+++++++++++++++.|+|++ ++..+.+++++|+++||+|++||
T Consensus 104 ~iV~~A~~~Ta~iF~~ls~~a~---~tk~Dfs~lg~~L~~~l~~li~~~l~~~F~~-s~~~~~~~s~~g~llfsgyilyD 179 (219)
T PRK10447 104 DVIALALGGTALVFFCCSAYVL---TTRKDMSFLGGMLMAGIVVVLIGMVANIFLQ-LPALHLAISAVFILISSGAILFE 179 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999997 8999999999999999999999999999997 67889999999999999999999
Q ss_pred hHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043748 81 TDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRSSD 119 (120)
Q Consensus 81 tq~i~~~~~~~dyi~~Al~LYlDiinlF~~iL~il~~~~ 119 (120)
||+|+++ ++|||+.||++||+|++|+|+++|||+++++
T Consensus 180 Tq~Ii~~-g~~dyi~aAl~LYlDiinlFl~lL~il~~~~ 217 (219)
T PRK10447 180 TSNIIHG-GETNYIRATVSLYVSLYNIFVSLLSILGFAS 217 (219)
T ss_pred HHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999975 6899999999999999999999999999765
No 2
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.97 E-value=6e-30 Score=195.85 Aligned_cols=111 Identities=34% Similarity=0.565 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 043748 2 IVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYDT 81 (120)
Q Consensus 2 iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~Dt 81 (120)
++++|+.+|+.+|++++++++ +||+|++++|++++++++++++++++|+|.+ ++..+.++|++|+++|++|++|||
T Consensus 116 ~i~~af~~t~~~F~~ls~~g~---~tk~Dls~l~~~l~~aligLiiasvvn~Fl~-s~~l~~~IS~lgvlifsgli~yDt 191 (233)
T COG0670 116 AIAAAFGITALVFGALSLYGY---TTKRDLSSLGSFLFMALIGLIIASLVNIFLG-SSALHLAISVLGVLIFSGLIAYDT 191 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998 8999999999999999999999999999998 568899999999999999999999
Q ss_pred HHHhhh-cCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043748 82 DNLIKR-FTYDDYILASVTLYLDILNLFISILRVLR 116 (120)
Q Consensus 82 q~i~~~-~~~~dyi~~Al~LYlDiinlF~~iL~il~ 116 (120)
|+|+|+ .+++.++.+|++||+|++|+|+++||++|
T Consensus 192 q~I~~~~~~~~~~i~~AlsLYldfiNlF~~LL~i~g 227 (233)
T COG0670 192 QNIKRMEGGERLAIMGALSLYLDFINLFLSLLRILG 227 (233)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999985 57889999999999999999999999998
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=99.97 E-value=2e-29 Score=188.88 Aligned_cols=113 Identities=44% Similarity=0.782 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 043748 2 IVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYDT 81 (120)
Q Consensus 2 iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~Dt 81 (120)
.+++|+..|+++|++++++|+ +||+|++++|++++.++.++++.++.++|++ ++..+.+++++|+++|++|++|||
T Consensus 96 ~i~~A~~~T~~if~~l~l~a~---~tk~d~~~~g~~l~~~~~~l~~~~l~~~f~~-~~~~~~~~~~~g~~lf~~~l~~Dt 171 (212)
T cd06181 96 SVLQAFGITAAVFGGLSLYAL---TTKRDFSFLGGFLFMGLIVLIVASLVNIFLQ-SPALQLAISALGVLLFSGYILYDT 171 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hccccHHhHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988 8999999999999999999999999999987 678899999999999999999999
Q ss_pred HHHhhhcC----chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043748 82 DNLIKRFT----YDDYILASVTLYLDILNLFISILRVLRSS 118 (120)
Q Consensus 82 q~i~~~~~----~~dyi~~Al~LYlDiinlF~~iL~il~~~ 118 (120)
|+++++.+ +|||+.||++||+|++|+|+++||++|++
T Consensus 172 q~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~il~~~ 212 (212)
T cd06181 172 QLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997653 79999999999999999999999999875
No 4
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.94 E-value=1.2e-25 Score=166.20 Aligned_cols=111 Identities=47% Similarity=0.794 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 043748 1 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYD 80 (120)
Q Consensus 1 ~iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~D 80 (120)
+++.+|+..|+++|++++++++ ++|+|++.++++++.++.++++.+++++|++ ++..+.+++++|+++|++|++||
T Consensus 93 ~~v~~a~~~T~~if~~l~~~a~---~~~~d~~~~~~~l~~~l~~l~i~~l~~~f~~-~~~~~~~is~~~~~lf~~~l~~D 168 (205)
T PF01027_consen 93 SIVLQAFLLTAAIFIALTLYAF---FTKRDFTRWGGILFIGLIGLIIFGLVSIFLP-SSPLYLLISYIGILLFSLYLVYD 168 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhhcccchHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999988 7899999999999999999999999999887 56778888999999999999999
Q ss_pred hHHHhhh-cCchHH-HHHHHHHHHHHHHHHHHHHHHh
Q 043748 81 TDNLIKR-FTYDDY-ILASVTLYLDILNLFISILRVL 115 (120)
Q Consensus 81 tq~i~~~-~~~~dy-i~~Al~LYlDiinlF~~iL~il 115 (120)
||+++|+ .++||+ +.+|++||+|++|+|+++||++
T Consensus 169 t~~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 169 TQRIIRRYFSPDDYAIIAALSLYLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999874 467887 9999999999999999999985
No 5
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=99.91 E-value=5.3e-25 Score=167.44 Aligned_cols=100 Identities=47% Similarity=0.852 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 043748 1 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYD 80 (120)
Q Consensus 1 ~iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~D 80 (120)
++|++|+.+|++++++++++++ |+|+||+.+|+.++..++++++.|++..+++.+++.+.+|+++|+++|++|++||
T Consensus 138 ~~VL~Al~IT~~V~~slt~~t~---qtK~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~D 214 (237)
T KOG2322|consen 138 KVVLLALIITTVVVLSLTLFTL---QTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYD 214 (237)
T ss_pred HHHHHHHHHHHhheeeEEEEEE---eeccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHhh
Confidence 4789999999999999999887 8899999999999999999999997766676788999999999999999999999
Q ss_pred hHHHhhhcCchHHHHHHHHHHHH
Q 043748 81 TDNLIKRFTYDDYILASVTLYLD 103 (120)
Q Consensus 81 tq~i~~~~~~~dyi~~Al~LYlD 103 (120)
||++++|.+|||||.+|+++|+|
T Consensus 215 tqllm~~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 215 TQLLMGRISPEEYIFAALNLYLD 237 (237)
T ss_pred hHHHhccCCHHHHHHHHHHhhcC
Confidence 99999999999999999999998
No 6
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=99.90 E-value=1.2e-23 Score=156.83 Aligned_cols=114 Identities=26% Similarity=0.450 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 043748 1 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYGGISALVFCGYIVYD 80 (120)
Q Consensus 1 ~iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~~~~~~~~~g~~iF~~yi~~D 80 (120)
+|+.+|+.+|+++|.|+|+.|++|+ ||++.++|+.|..++..+.+.++.|.|++ |.+....-.|+|+++|+||+++|
T Consensus 107 sIliTAf~GTav~F~cfSasAmlAr--rreYLylGg~L~s~~s~l~wl~l~n~~fg-S~~v~~~qLY~Gllvfvg~ivvd 183 (235)
T KOG1629|consen 107 SILITAFVGTAVIFVCFSASAMLAR--RREYLYLGGLLSSGLSLLLWLSLANSFFG-SIWVFKFQLYVGLLVFVGFIVVD 183 (235)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhheeEEee
Confidence 3789999999999999999999875 56789999999999999999999999998 77778888999999999999999
Q ss_pred hHHHhhhc--CchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043748 81 TDNLIKRF--TYDDYILASVTLYLDILNLFISILRVLRS 117 (120)
Q Consensus 81 tq~i~~~~--~~~dyi~~Al~LYlDiinlF~~iL~il~~ 117 (120)
||+|+||+ ++.||++||+.+|.|++.+|.++|.|+-.
T Consensus 184 TQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~ 222 (235)
T KOG1629|consen 184 TQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAM 222 (235)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999875 56899999999999999999999999864
No 7
>KOG1630 consensus Growth hormone-induced protein and related proteins [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-19 Score=139.43 Aligned_cols=116 Identities=27% Similarity=0.427 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHHH
Q 043748 1 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGST----STAVYGGISALVFCGY 76 (120)
Q Consensus 1 ~iv~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~~~----~~~~~~~~g~~iF~~y 76 (120)
+++..|...|+++++++|..+.+|+.. .|..+|++|-+++-++++.++.++|.|.... ...+..+.|+++||+|
T Consensus 204 PiLtrAa~YTaGIVGgLStvA~cAPSe--KFL~MggPLaiGlGvVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS~F 281 (336)
T KOG1630|consen 204 PILTRAAWYTAGIVGGLSTVAACAPSE--KFLNMGGPLAIGLGVVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFSGF 281 (336)
T ss_pred HHHHHHHHHHccccchhhhhhhcCcHH--HHhhcCCCceeeeeeEehhhhhhhhcCCchhhhhhhHHHHHhccHHHHHHH
Confidence 367789999999999999999876654 4799999999999999999999999875332 3445678999999999
Q ss_pred HHHHhHHHhhhcC---------chHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043748 77 IVYDTDNLIKRFT---------YDDYILASVTLYLDILNLFISILRVLRSS 118 (120)
Q Consensus 77 i~~Dtq~i~~~~~---------~~dyi~~Al~LYlDiinlF~~iL~il~~~ 118 (120)
++||||++.|+.+ +-|++.+++++|+|..|+|+||..|++..
T Consensus 282 LLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv~il~gg 332 (336)
T KOG1630|consen 282 LLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIVMILGGG 332 (336)
T ss_pred HHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999986531 25899999999999999999999999864
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=97.88 E-value=0.00065 Score=53.57 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccc-ch-hchhhHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHH
Q 043748 2 IVLEALILTSAVVCSLTGYTFWASKKGK-DF-SFLGPILFTSLIILILTSFMQMFFP-------LGSTSTAVYGGISALV 72 (120)
Q Consensus 2 iv~~A~~~T~~~f~~lsl~a~~a~~tk~-d~-~~~g~~L~~~l~~li~~~l~~~f~~-------~~~~~~~~~~~~g~~i 72 (120)
++.+|...|.++|.++-+. + +++. .- .++.++...+..+..+..++|+... .+....+.++.+++.+
T Consensus 146 Iv~qAvl~T~~vf~~ml~l-Y---k~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~l~~~gplgI~~slv~v~i 221 (274)
T PF12811_consen 146 IVFQAVLGTFGVFAVMLAL-Y---KTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGSLRDGGPLGIGFSLVVVGI 221 (274)
T ss_pred HHHHHHHHHHHHHHHHHHH-H---HhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHH
Confidence 6899999999999988753 4 2221 22 2466677777777666666665321 1234567778888888
Q ss_pred HHHHHHHHhHHHhhh---cCchHH-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043748 73 FCGYIVYDTDNLIKR---FTYDDY-ILASVTLYLDILNLFISILRVLRSSDG 120 (120)
Q Consensus 73 F~~yi~~Dtq~i~~~---~~~~dy-i~~Al~LYlDiinlF~~iL~il~~~~~ 120 (120)
=+..++.|.+.|.+. .-|++| -.+|+.|=...|=+++.+||+++.-+|
T Consensus 222 Aa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vTLVWLYlEILRLL~~l~~ 273 (274)
T PF12811_consen 222 AALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVTLVWLYLEILRLLSKLQN 273 (274)
T ss_pred HHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999999888653 235554 459999999999999999999987553
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=95.60 E-value=0.27 Score=37.91 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccc-----cchhchhhHHHHHHHHHHHHHHH-HHhccc-ch------HHHHHH--H
Q 043748 2 IVLEALILTSAVVCSLTGYTFWASKKG-----KDFSFLGPILFTSLIILILTSFM-QMFFPL-GS------TSTAVY--G 66 (120)
Q Consensus 2 iv~~A~~~T~~~f~~lsl~a~~a~~tk-----~d~~~~g~~L~~~l~~li~~~l~-~~f~~~-~~------~~~~~~--~ 66 (120)
+|.+|...|.++|.+|-.. | +|. ..|+.+---...+..++.+..++ .+|.+. ++ ...++. -
T Consensus 144 ligqAvLgT~Gvf~gML~v-Y---ktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLf 219 (276)
T COG4760 144 LIGQAVLGTFGVFFGMLVV-Y---KTGAIKVTPKFTRMVVAATFGVLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLF 219 (276)
T ss_pred eeHHHHHHHHHHHHHHHHH-H---hcCceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceEeeHHHH
Confidence 4789999999999998753 3 321 12333322222233333333333 233211 11 112233 3
Q ss_pred HHHHHHHHHHHHHHhH-HHhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043748 67 GISALVFCGYIVYDTD-NLIKRFTY-DDYILASVTLYLDILNLFISILRVLRSSDG 120 (120)
Q Consensus 67 ~~g~~iF~~yi~~Dtq-~i~~~~~~-~dyi~~Al~LYlDiinlF~~iL~il~~~~~ 120 (120)
++|+.-|+..+=+|.- +++|+..| +..-..|+.|=...+=+++.+||+++.-+|
T Consensus 220 cigiAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~VTLVWLY~EiLRLLSy~Qn 275 (276)
T COG4760 220 CIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLYLEILRLLSYLQN 275 (276)
T ss_pred HHHHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence 6788889988888873 22343334 345667999999999999999999986554
No 10
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=9 Score=24.56 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHH-------HHhHHHhhhc-CchHH----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043748 64 VYGGISALVFCGYIV-------YDTDNLIKRF-TYDDY----ILASVTLYLDILNLFISILRVLRSSD 119 (120)
Q Consensus 64 ~~~~~g~~iF~~yi~-------~Dtq~i~~~~-~~~dy----i~~Al~LYlDiinlF~~iL~il~~~~ 119 (120)
...++...+|.-|++ .|.|.+++++ -|+|| ..+|.-.-+-+|..|+..+.+=++++
T Consensus 11 ~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskkK 78 (81)
T KOG3488|consen 11 MLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKKK 78 (81)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 344555666666665 4889999886 46665 45677777899999999988766543
No 11
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.21 E-value=61 Score=25.38 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=23.0
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHHHhcccc
Q 043748 27 KGKDFSFLGPILFTSLIILILTSFMQMFFPLG 58 (120)
Q Consensus 27 tk~d~~~~g~~L~~~l~~li~~~l~~~f~~~~ 58 (120)
+.-.|....+.+--++.=+.+.+.++++++..
T Consensus 165 ~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~ 196 (249)
T KOG3103|consen 165 KNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQ 196 (249)
T ss_pred cCcceeeehHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456667777777777788888888887643
No 12
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=43.30 E-value=46 Score=19.94 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 043748 64 VYGGISALVFCGYIVYDTDNL 84 (120)
Q Consensus 64 ~~~~~g~~iF~~yi~~Dtq~i 84 (120)
+|..+.-++||+|++.-|-+=
T Consensus 5 vY~vi~gI~~S~ym~v~t~~e 25 (52)
T PF14147_consen 5 VYFVIAGIIFSGYMAVKTAKE 25 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455579999999998653
No 13
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=37.93 E-value=1.4e+02 Score=20.68 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=14.3
Q ss_pred cccchhchhhHHHHHHHHHHHHHHHH
Q 043748 27 KGKDFSFLGPILFTSLIILILTSFMQ 52 (120)
Q Consensus 27 tk~d~~~~g~~L~~~l~~li~~~l~~ 52 (120)
.+.|+..+...++.+....++.+++.
T Consensus 89 ~~~~~~~~~~~lF~~am~~l~~sl~~ 114 (130)
T PF11026_consen 89 LSIDLSWLVAILFVLAMLLLIASLVL 114 (130)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555555555543
No 14
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=34.69 E-value=1.7e+02 Score=25.50 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcc
Q 043748 3 VLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFP 56 (120)
Q Consensus 3 v~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~ 56 (120)
+..|+..++.++.+.+.+-+ .++||-.+..+.+-+++...++.++...+.+
T Consensus 188 ~~aa~~tg~f~v~gvsA~~l---lr~r~~~~~r~~~~i~l~~~li~~~~~~~~G 238 (522)
T PRK15097 188 VASGYVTGAMFILGISAYYM---LKGRDFAFAKRSFAIAASFGMAAVLSVIVLG 238 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777778888888755 4566777888888888888888888777654
No 15
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=32.42 E-value=1.9e+02 Score=25.06 Aligned_cols=51 Identities=6% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccchhchhhHHHHHHHHHHHHHHHHHhcc
Q 043748 3 VLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFP 56 (120)
Q Consensus 3 v~~A~~~T~~~f~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~li~~~l~~~f~~ 56 (120)
+..|+..++.++.+.+.+-+ .++||-....+.+-.++...++.++..++.+
T Consensus 188 ~~aa~~tg~~~v~gvsA~~l---Lr~r~~~~~r~~l~i~l~~~li~~~~~~~~G 238 (514)
T PRK15035 188 VMAGYVTGAMFIMAISAWYL---LRGRERDVALRSFAIGSVFGTLAIIGTLQLG 238 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888888888765 3466667788888888888888888777654
No 16
>PHA03048 IMV membrane protein; Provisional
Probab=30.30 E-value=1.7e+02 Score=19.52 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 043748 65 YGGISALVFCGYI 77 (120)
Q Consensus 65 ~~~~g~~iF~~yi 77 (120)
...+|+++|++|=
T Consensus 56 vl~lG~~ifsmy~ 68 (93)
T PHA03048 56 VMTIGMLIYSMWG 68 (93)
T ss_pred HHHHHHHHHHHHh
Confidence 3456777777764
No 17
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=26.50 E-value=97 Score=21.54 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhc
Q 043748 68 ISALVFCGYIVYDTDNLIKRF 88 (120)
Q Consensus 68 ~g~~iF~~yi~~Dtq~i~~~~ 88 (120)
+.+.+|+.++++.|-++.-+.
T Consensus 31 ~~v~lfGlFL~~Qt~~lR~~F 51 (116)
T PF11317_consen 31 LVVALFGLFLLFQTTRLRLQF 51 (116)
T ss_pred HHHHHHHHHHHHhheeEEEEE
Confidence 456789999999998886443
No 18
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=23.32 E-value=95 Score=17.54 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 043748 3 VLEALILTSAVVCSLTGYTF 22 (120)
Q Consensus 3 v~~A~~~T~~~f~~lsl~a~ 22 (120)
|+.|.+.|+++.+++.+...
T Consensus 7 VW~sYg~t~~~l~~l~~~~~ 26 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSL 26 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888889888888887655
No 19
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=20.37 E-value=1e+02 Score=18.45 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 043748 68 ISALVFCGYIVYD 80 (120)
Q Consensus 68 ~g~~iF~~yi~~D 80 (120)
.|++.|.+|+++|
T Consensus 33 ~G~aaf~~~v~~E 45 (57)
T PF08122_consen 33 IGFAAFAVYVAVE 45 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 6778999999999
No 20
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=20.19 E-value=1.1e+02 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=19.5
Q ss_pred ccchhchhhHHHHHHHHHHHHHHHHHhc
Q 043748 28 GKDFSFLGPILFTSLIILILTSFMQMFF 55 (120)
Q Consensus 28 k~d~~~~g~~L~~~l~~li~~~l~~~f~ 55 (120)
|+|-++..-++.++++++++++++++++
T Consensus 208 ~y~ksk~s~wf~~~miI~v~~sFVsMil 235 (244)
T KOG2678|consen 208 KYDKSKLSYWFYITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777888888888887764
No 21
>COG4129 Predicted membrane protein [Function unknown]
Probab=20.12 E-value=4.8e+02 Score=21.17 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccchHHH
Q 043748 35 GPILFTSLIILILTSFMQMFFPLGSTST 62 (120)
Q Consensus 35 g~~L~~~l~~li~~~l~~~f~~~~~~~~ 62 (120)
..-+....++.++..+...+++.+++..
T Consensus 58 ~~r~~g~~iG~~~a~l~~~l~g~~~~~~ 85 (332)
T COG4129 58 LQRLLGNALGAILAVLFFLLFGQNPIAF 85 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3334444555555555555555454444
Done!